Query 036323
Match_columns 583
No_of_seqs 435 out of 3097
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 19:49:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 3.1E-51 1.1E-55 446.0 25.7 316 183-525 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 8.6E-41 2.9E-45 369.3 16.4 286 181-517 129-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-39 4.2E-44 389.2 25.5 315 175-524 119-453 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 2.6E-37 9E-42 340.6 22.0 307 178-521 122-450 (591)
5 2qen_A Walker-type ATPase; unk 99.8 2.6E-17 9E-22 168.4 21.2 294 175-517 7-349 (350)
6 1w5s_A Origin recognition comp 99.8 2.1E-17 7.3E-22 173.2 20.2 320 178-512 20-387 (412)
7 2fna_A Conserved hypothetical 99.7 1.3E-16 4.5E-21 163.6 20.9 292 177-516 10-356 (357)
8 3qfl_A MLA10; coiled-coil, (CC 99.7 6.7E-17 2.3E-21 136.0 7.7 79 10-88 3-83 (115)
9 2v1u_A Cell division control p 99.6 1E-13 3.5E-18 143.6 22.1 297 178-496 17-352 (387)
10 1fnn_A CDC6P, cell division co 99.6 1.6E-13 5.6E-18 142.3 21.9 299 179-497 16-353 (389)
11 2qby_B CDC6 homolog 3, cell di 99.6 2.3E-13 7.9E-18 141.0 22.3 297 179-497 19-341 (384)
12 2qby_A CDC6 homolog 1, cell di 99.5 3.8E-13 1.3E-17 139.2 16.9 297 178-496 18-349 (386)
13 1njg_A DNA polymerase III subu 99.4 1.7E-12 5.8E-17 124.9 14.5 199 179-394 22-231 (250)
14 2chg_A Replication factor C sm 99.4 1.3E-11 4.6E-16 116.9 15.9 186 179-391 16-204 (226)
15 1hqc_A RUVB; extended AAA-ATPa 99.2 8.2E-11 2.8E-15 118.8 13.9 268 179-494 11-324 (324)
16 1sxj_B Activator 1 37 kDa subu 99.2 1.5E-10 5.2E-15 116.5 13.0 186 179-391 20-210 (323)
17 1iqp_A RFCS; clamp loader, ext 99.0 1.2E-09 4.1E-14 110.1 12.2 184 179-392 24-213 (327)
18 1jr3_A DNA polymerase III subu 98.9 7E-09 2.4E-13 106.6 14.7 195 180-391 16-221 (373)
19 2chq_A Replication factor C sm 98.9 1.3E-08 4.4E-13 102.1 13.1 183 179-391 16-204 (319)
20 3te6_A Regulatory protein SIR3 98.8 1.6E-08 5.6E-13 100.4 12.4 174 180-358 20-212 (318)
21 3pfi_A Holliday junction ATP-d 98.8 1.8E-07 6E-12 94.8 18.6 179 179-391 28-227 (338)
22 1jbk_A CLPB protein; beta barr 98.8 2.6E-08 8.9E-13 91.6 11.1 152 179-353 21-194 (195)
23 3bos_A Putative DNA replicatio 98.7 2.2E-08 7.6E-13 95.9 9.4 175 179-391 27-217 (242)
24 1sxj_D Activator 1 41 kDa subu 98.7 1.3E-07 4.4E-12 96.3 13.6 195 179-390 36-234 (353)
25 3uk6_A RUVB-like 2; hexameric 98.6 2.6E-07 8.7E-12 94.7 12.3 199 179-390 43-302 (368)
26 2z4s_A Chromosomal replication 98.6 4.3E-07 1.5E-11 95.2 14.1 182 208-410 130-332 (440)
27 3pvs_A Replication-associated 98.5 6.7E-07 2.3E-11 93.6 14.3 180 179-390 25-214 (447)
28 3h4m_A Proteasome-activating n 98.5 8.5E-07 2.9E-11 87.3 13.0 189 177-390 14-230 (285)
29 1sxj_A Activator 1 95 kDa subu 98.5 1E-06 3.5E-11 94.5 13.4 196 179-390 38-252 (516)
30 3u61_B DNA polymerase accessor 98.5 1.4E-06 4.7E-11 87.6 13.6 180 179-389 25-214 (324)
31 1sxj_E Activator 1 40 kDa subu 98.4 8.9E-07 3.1E-11 90.1 11.5 197 179-391 13-237 (354)
32 1a5t_A Delta prime, HOLB; zinc 98.4 3.8E-06 1.3E-10 84.7 15.7 171 186-391 8-205 (334)
33 2p65_A Hypothetical protein PF 98.4 8.9E-07 3E-11 80.8 10.0 46 179-231 21-66 (187)
34 1l8q_A Chromosomal replication 98.4 5.6E-06 1.9E-10 83.1 16.6 156 207-386 36-203 (324)
35 2qz4_A Paraplegin; AAA+, SPG7, 98.4 4.3E-06 1.5E-10 81.0 15.3 189 179-390 5-221 (262)
36 3syl_A Protein CBBX; photosynt 98.4 1.7E-06 6E-11 86.1 11.3 162 181-358 32-218 (309)
37 1d2n_A N-ethylmaleimide-sensit 98.3 9.3E-06 3.2E-10 79.3 15.3 172 180-383 33-229 (272)
38 3n70_A Transport activator; si 98.3 8.7E-07 3E-11 77.8 6.7 114 181-326 2-115 (145)
39 1sxj_C Activator 1 40 kDa subu 98.3 5.6E-06 1.9E-10 83.7 13.4 181 180-387 25-208 (340)
40 3eie_A Vacuolar protein sortin 98.3 1.1E-05 3.6E-10 81.0 15.1 190 177-391 15-228 (322)
41 1in4_A RUVB, holliday junction 98.2 8.6E-05 2.9E-09 74.7 19.9 178 179-390 24-222 (334)
42 3d8b_A Fidgetin-like protein 1 98.2 1.6E-05 5.3E-10 81.0 14.5 188 179-391 83-295 (357)
43 2qp9_X Vacuolar protein sortin 98.2 1.8E-05 6E-10 80.5 14.3 189 178-391 49-261 (355)
44 1xwi_A SKD1 protein; VPS4B, AA 98.2 6.9E-05 2.3E-09 75.0 18.3 191 178-392 10-224 (322)
45 3b9p_A CG5977-PA, isoform A; A 98.2 6.3E-05 2.2E-09 74.3 17.4 188 178-390 19-232 (297)
46 2gno_A DNA polymerase III, gam 98.1 1.7E-05 5.9E-10 78.5 12.9 148 184-357 1-152 (305)
47 1qvr_A CLPB protein; coiled co 98.1 5.9E-06 2E-10 94.0 10.0 154 180-356 170-344 (854)
48 3ec2_A DNA replication protein 98.1 4.7E-06 1.6E-10 75.9 7.5 121 185-326 19-142 (180)
49 3cf0_A Transitional endoplasmi 98.1 3.7E-05 1.3E-09 76.2 14.4 184 178-386 13-223 (301)
50 3vfd_A Spastin; ATPase, microt 98.0 7.9E-05 2.7E-09 76.7 16.1 190 177-390 112-325 (389)
51 2zan_A Vacuolar protein sortin 98.0 6.2E-05 2.1E-09 78.9 14.5 191 178-391 132-345 (444)
52 2w58_A DNAI, primosome compone 98.0 1E-05 3.5E-10 75.1 7.6 125 181-326 26-158 (202)
53 3co5_A Putative two-component 98.0 3.6E-06 1.2E-10 73.6 4.1 110 181-326 5-115 (143)
54 3hu3_A Transitional endoplasmi 98.0 9E-05 3.1E-09 78.3 14.9 179 180-383 204-406 (489)
55 4fcw_A Chaperone protein CLPB; 98.0 4.2E-05 1.4E-09 76.0 11.8 137 181-326 18-169 (311)
56 2bjv_A PSP operon transcriptio 97.9 2.6E-05 8.8E-10 75.8 9.4 47 180-231 6-52 (265)
57 3pxg_A Negative regulator of g 97.9 1.5E-05 5.3E-10 84.1 8.1 147 180-357 180-338 (468)
58 1ofh_A ATP-dependent HSL prote 97.9 6.6E-05 2.3E-09 74.4 11.2 52 180-231 15-73 (310)
59 2c9o_A RUVB-like 1; hexameric 97.8 8.7E-05 3E-09 78.1 11.8 98 289-390 297-409 (456)
60 4b4t_J 26S protease regulatory 97.8 0.00042 1.4E-08 70.5 16.2 180 178-383 146-353 (405)
61 1ojl_A Transcriptional regulat 97.8 4E-05 1.4E-09 76.1 8.2 47 180-231 2-48 (304)
62 4b4t_L 26S protease subunit RP 97.8 0.00039 1.3E-08 71.8 15.2 181 177-383 178-386 (437)
63 4b4t_K 26S protease regulatory 97.8 0.00044 1.5E-08 71.3 15.5 55 177-231 169-229 (428)
64 3pxi_A Negative regulator of g 97.8 4E-05 1.4E-09 86.1 8.4 157 180-357 491-675 (758)
65 1lv7_A FTSH; alpha/beta domain 97.7 0.00026 8.9E-09 68.2 12.9 187 178-389 10-223 (257)
66 2kjq_A DNAA-related protein; s 97.7 2.3E-05 7.9E-10 68.9 4.8 87 208-326 36-124 (149)
67 1r6b_X CLPA protein; AAA+, N-t 97.7 0.0002 7E-09 80.4 12.8 157 180-357 186-362 (758)
68 3pxi_A Negative regulator of g 97.6 5.9E-05 2E-09 84.7 7.3 149 180-357 180-338 (758)
69 2ce7_A Cell division protein F 97.6 0.00056 1.9E-08 71.7 13.9 181 179-384 15-221 (476)
70 4b4t_H 26S protease regulatory 97.5 0.00072 2.5E-08 69.8 13.4 178 180-383 209-414 (467)
71 4b4t_M 26S protease regulatory 97.5 0.00037 1.3E-08 71.9 11.1 181 177-383 178-386 (434)
72 4b4t_I 26S protease regulatory 97.4 0.00069 2.4E-08 69.2 11.6 180 178-383 180-387 (437)
73 2r62_A Cell division protease 97.4 6.3E-05 2.2E-09 73.0 3.2 54 178-231 9-67 (268)
74 3t15_A Ribulose bisphosphate c 97.4 0.0021 7E-08 63.2 14.1 26 206-231 34-59 (293)
75 2r44_A Uncharacterized protein 97.3 0.00038 1.3E-08 69.8 8.1 151 180-358 27-199 (331)
76 1r6b_X CLPA protein; AAA+, N-t 97.3 0.00049 1.7E-08 77.3 9.8 134 180-326 458-607 (758)
77 3cf2_A TER ATPase, transitiona 97.3 0.0025 8.5E-08 70.8 14.6 181 179-384 203-407 (806)
78 2cvh_A DNA repair and recombin 97.3 0.00086 2.9E-08 62.6 9.1 86 207-298 19-116 (220)
79 1qvr_A CLPB protein; coiled co 97.2 0.0009 3.1E-08 76.0 10.1 137 180-326 558-710 (854)
80 2qgz_A Helicase loader, putati 97.2 0.0003 1E-08 69.8 5.1 43 185-231 133-175 (308)
81 1ixz_A ATP-dependent metallopr 97.1 0.0055 1.9E-07 58.6 13.1 160 178-357 14-199 (254)
82 2vhj_A Ntpase P4, P4; non- hyd 97.1 0.00031 1.1E-08 69.0 4.2 69 207-297 122-192 (331)
83 3m6a_A ATP-dependent protease 97.1 0.00056 1.9E-08 73.4 6.4 165 180-357 81-266 (543)
84 2dhr_A FTSH; AAA+ protein, hex 97.0 0.0045 1.5E-07 65.2 12.6 178 178-384 29-236 (499)
85 1g8p_A Magnesium-chelatase 38 97.0 0.0016 5.4E-08 65.6 8.9 47 178-231 22-68 (350)
86 1n0w_A DNA repair protein RAD5 97.0 0.0025 8.5E-08 60.4 9.7 91 207-298 23-130 (243)
87 1ypw_A Transitional endoplasmi 96.9 0.002 7E-08 72.4 9.9 160 178-357 202-385 (806)
88 1jr3_D DNA polymerase III, del 96.9 0.0094 3.2E-07 59.8 13.9 157 208-390 18-184 (343)
89 1um8_A ATP-dependent CLP prote 96.9 0.0052 1.8E-07 62.6 11.9 24 208-231 72-95 (376)
90 2x8a_A Nuclear valosin-contain 96.9 0.015 5.1E-07 56.4 14.3 157 179-357 9-191 (274)
91 1iy2_A ATP-dependent metallopr 96.9 0.0036 1.2E-07 60.9 9.8 55 177-231 37-96 (278)
92 2w0m_A SSO2452; RECA, SSPF, un 96.7 0.0052 1.8E-07 57.6 9.3 115 208-327 23-168 (235)
93 1g5t_A COB(I)alamin adenosyltr 96.7 0.0032 1.1E-07 57.2 7.3 113 209-327 29-163 (196)
94 3hr8_A Protein RECA; alpha and 96.7 0.005 1.7E-07 61.9 9.3 85 206-297 59-149 (356)
95 2b8t_A Thymidine kinase; deoxy 96.6 0.0014 4.7E-08 61.4 4.5 114 207-328 11-127 (223)
96 3io5_A Recombination and repai 96.5 0.0076 2.6E-07 59.0 9.1 81 210-297 30-121 (333)
97 1v5w_A DMC1, meiotic recombina 96.5 0.017 5.7E-07 58.0 11.7 90 206-296 120-228 (343)
98 1xp8_A RECA protein, recombina 96.4 0.0088 3E-07 60.5 8.9 84 207-297 73-162 (366)
99 2i1q_A DNA repair and recombin 96.4 0.01 3.5E-07 59.0 9.3 90 206-296 96-213 (322)
100 1ye8_A Protein THEP1, hypothet 96.3 0.02 6.8E-07 51.5 10.2 22 210-231 2-23 (178)
101 2z43_A DNA repair and recombin 96.3 0.014 4.8E-07 58.1 10.0 90 207-297 106-213 (324)
102 1rz3_A Hypothetical protein rb 96.3 0.0044 1.5E-07 57.0 5.5 43 184-230 2-44 (201)
103 2zr9_A Protein RECA, recombina 96.2 0.013 4.4E-07 58.9 8.8 84 207-297 60-149 (349)
104 2cbz_A Multidrug resistance-as 96.1 0.036 1.2E-06 52.3 10.9 24 208-231 31-54 (237)
105 1cr0_A DNA primase/helicase; R 96.0 0.019 6.5E-07 56.2 8.9 25 207-231 34-58 (296)
106 2pze_A Cystic fibrosis transme 96.0 0.081 2.8E-06 49.6 12.9 24 208-231 34-57 (229)
107 1pzn_A RAD51, DNA repair and r 96.0 0.02 6.7E-07 57.6 9.1 92 206-298 129-242 (349)
108 1u94_A RECA protein, recombina 96.0 0.016 5.4E-07 58.4 8.3 83 207-296 62-150 (356)
109 2ff7_A Alpha-hemolysin translo 95.9 0.034 1.1E-06 52.9 9.8 23 208-230 35-57 (247)
110 3tqc_A Pantothenate kinase; bi 95.9 0.019 6.4E-07 56.8 8.2 45 183-230 70-114 (321)
111 2px0_A Flagellar biosynthesis 95.8 0.017 5.7E-07 56.7 7.6 24 207-230 104-127 (296)
112 3c8u_A Fructokinase; YP_612366 95.8 0.0067 2.3E-07 56.1 4.4 38 188-230 7-44 (208)
113 1mv5_A LMRA, multidrug resista 95.8 0.044 1.5E-06 52.0 10.3 24 207-230 27-50 (243)
114 2dr3_A UPF0273 protein PH0284; 95.7 0.028 9.5E-07 53.1 8.6 39 208-248 23-61 (247)
115 3nbx_X ATPase RAVA; AAA+ ATPas 95.7 0.008 2.7E-07 63.4 5.0 42 181-231 23-64 (500)
116 4a74_A DNA repair and recombin 95.6 0.05 1.7E-06 50.7 9.9 45 207-251 24-72 (231)
117 2pjz_A Hypothetical protein ST 95.6 0.091 3.1E-06 50.4 11.5 23 208-230 30-52 (263)
118 4g1u_C Hemin import ATP-bindin 95.5 0.063 2.1E-06 51.6 10.2 23 208-230 37-59 (266)
119 2orw_A Thymidine kinase; TMTK, 95.5 0.002 7E-08 58.5 -0.4 22 209-230 4-25 (184)
120 1qhx_A CPT, protein (chloramph 95.5 0.0061 2.1E-07 54.6 2.8 22 209-230 4-25 (178)
121 1zp6_A Hypothetical protein AT 95.5 0.0079 2.7E-07 54.6 3.5 25 207-231 8-32 (191)
122 3kb2_A SPBC2 prophage-derived 95.4 0.0063 2.2E-07 54.1 2.7 22 209-230 2-23 (173)
123 3lw7_A Adenylate kinase relate 95.4 0.0067 2.3E-07 54.0 2.9 20 209-228 2-21 (179)
124 3nh6_A ATP-binding cassette SU 95.4 0.045 1.5E-06 53.7 8.9 23 208-230 80-102 (306)
125 1ly1_A Polynucleotide kinase; 95.4 0.0076 2.6E-07 54.0 3.1 22 209-230 3-24 (181)
126 3lda_A DNA repair protein RAD5 95.4 0.045 1.5E-06 55.9 9.1 57 207-264 177-237 (400)
127 2nq2_C Hypothetical ABC transp 95.4 0.085 2.9E-06 50.3 10.6 24 208-231 31-54 (253)
128 3hws_A ATP-dependent CLP prote 95.3 0.012 4E-07 59.6 4.4 51 181-231 16-74 (363)
129 3ice_A Transcription terminati 95.2 0.012 4.2E-07 59.0 4.2 52 191-249 163-215 (422)
130 3vaa_A Shikimate kinase, SK; s 95.2 0.0081 2.8E-07 55.1 2.7 23 208-230 25-47 (199)
131 2rhm_A Putative kinase; P-loop 95.2 0.011 3.8E-07 53.6 3.4 24 207-230 4-27 (193)
132 3uie_A Adenylyl-sulfate kinase 95.1 0.011 3.7E-07 54.3 3.3 25 207-231 24-48 (200)
133 3bh0_A DNAB-like replicative h 95.1 0.11 3.9E-06 51.2 10.9 53 207-263 67-119 (315)
134 1gvn_B Zeta; postsegregational 95.1 0.019 6.5E-07 56.0 5.2 25 206-230 31-55 (287)
135 1kgd_A CASK, peripheral plasma 95.1 0.01 3.5E-07 53.5 2.9 23 208-230 5-27 (180)
136 1vma_A Cell division protein F 95.1 0.056 1.9E-06 53.1 8.5 88 206-296 102-195 (306)
137 1odf_A YGR205W, hypothetical 3 95.0 0.022 7.5E-07 55.6 5.4 25 206-230 29-53 (290)
138 3tui_C Methionine import ATP-b 95.0 0.057 1.9E-06 54.2 8.4 54 279-332 173-229 (366)
139 1nks_A Adenylate kinase; therm 95.0 0.013 4.3E-07 53.1 3.2 23 209-231 2-24 (194)
140 3trf_A Shikimate kinase, SK; a 95.0 0.011 3.6E-07 53.5 2.6 23 208-230 5-27 (185)
141 1kag_A SKI, shikimate kinase I 94.9 0.0095 3.2E-07 53.1 2.2 22 209-230 5-26 (173)
142 3cf2_A TER ATPase, transitiona 94.9 0.067 2.3E-06 59.4 9.4 54 178-231 475-534 (806)
143 1knq_A Gluconate kinase; ALFA/ 94.9 0.015 5E-07 52.0 3.4 24 207-230 7-30 (175)
144 3tau_A Guanylate kinase, GMP k 94.9 0.012 4.2E-07 54.4 2.9 25 207-231 7-31 (208)
145 1sky_E F1-ATPase, F1-ATP synth 94.9 0.027 9.2E-07 58.3 5.7 41 209-250 152-192 (473)
146 2p5t_B PEZT; postsegregational 94.9 0.023 7.8E-07 54.3 4.9 40 189-230 15-54 (253)
147 3d31_A Sulfate/molybdate ABC t 94.9 0.091 3.1E-06 52.5 9.4 23 208-230 26-48 (348)
148 4eun_A Thermoresistant glucoki 94.8 0.012 4.1E-07 54.0 2.7 24 207-230 28-51 (200)
149 3t61_A Gluconokinase; PSI-biol 94.8 0.01 3.5E-07 54.5 2.2 23 208-230 18-40 (202)
150 2qt1_A Nicotinamide riboside k 94.8 0.02 6.8E-07 52.7 4.2 26 206-231 19-44 (207)
151 2ga8_A Hypothetical 39.9 kDa p 94.8 0.027 9.1E-07 56.2 5.2 45 183-230 2-46 (359)
152 3tr0_A Guanylate kinase, GMP k 94.8 0.014 4.9E-07 53.5 3.0 23 208-230 7-29 (205)
153 4gp7_A Metallophosphoesterase; 94.7 0.012 4.3E-07 52.4 2.5 24 207-230 8-31 (171)
154 1ukz_A Uridylate kinase; trans 94.7 0.017 5.9E-07 52.9 3.6 25 206-230 13-37 (203)
155 1uf9_A TT1252 protein; P-loop, 94.7 0.017 5.7E-07 52.9 3.5 25 206-230 6-30 (203)
156 3asz_A Uridine kinase; cytidin 94.7 0.017 5.9E-07 53.3 3.5 24 207-230 5-28 (211)
157 4akg_A Glutathione S-transfera 94.7 0.67 2.3E-05 58.3 18.3 139 209-357 1268-1431(2695)
158 1tev_A UMP-CMP kinase; ploop, 94.7 0.015 5.3E-07 52.6 3.1 23 208-230 3-25 (196)
159 4a1f_A DNAB helicase, replicat 94.7 0.07 2.4E-06 53.1 7.9 53 208-264 46-98 (338)
160 1kht_A Adenylate kinase; phosp 94.6 0.015 5.1E-07 52.6 2.8 22 209-230 4-25 (192)
161 3iij_A Coilin-interacting nucl 94.6 0.012 4.2E-07 52.8 2.2 23 208-230 11-33 (180)
162 2qor_A Guanylate kinase; phosp 94.6 0.012 4.1E-07 54.2 2.1 25 207-231 11-35 (204)
163 2j41_A Guanylate kinase; GMP, 94.6 0.015 5.3E-07 53.3 2.9 24 208-231 6-29 (207)
164 2yvu_A Probable adenylyl-sulfa 94.6 0.021 7.2E-07 51.6 3.7 26 206-231 11-36 (186)
165 2c95_A Adenylate kinase 1; tra 94.6 0.016 5.5E-07 52.6 2.9 23 208-230 9-31 (196)
166 3tlx_A Adenylate kinase 2; str 94.6 0.024 8.2E-07 53.8 4.2 24 207-230 28-51 (243)
167 1y63_A LMAJ004144AAA protein; 94.6 0.017 6E-07 52.1 3.1 24 207-230 9-32 (184)
168 3jvv_A Twitching mobility prot 94.6 0.026 9E-07 56.7 4.6 112 208-330 123-234 (356)
169 1qf9_A UMP/CMP kinase, protein 94.6 0.022 7.5E-07 51.5 3.8 24 207-230 5-28 (194)
170 1zuh_A Shikimate kinase; alpha 94.5 0.015 5.3E-07 51.5 2.6 25 206-230 5-29 (168)
171 2bdt_A BH3686; alpha-beta prot 94.5 0.019 6.5E-07 52.0 3.2 22 209-230 3-24 (189)
172 3a4m_A L-seryl-tRNA(SEC) kinas 94.5 0.018 6.1E-07 55.3 3.2 23 208-230 4-26 (260)
173 2ze6_A Isopentenyl transferase 94.5 0.018 6E-07 55.1 3.1 23 209-231 2-24 (253)
174 3umf_A Adenylate kinase; rossm 94.5 0.023 7.7E-07 52.9 3.7 26 205-230 26-51 (217)
175 3cm0_A Adenylate kinase; ATP-b 94.5 0.02 6.9E-07 51.5 3.3 23 208-230 4-26 (186)
176 3a00_A Guanylate kinase, GMP k 94.5 0.014 4.8E-07 52.8 2.2 22 209-230 2-23 (186)
177 1ex7_A Guanylate kinase; subst 94.5 0.011 3.8E-07 53.5 1.5 22 209-230 2-23 (186)
178 3dm5_A SRP54, signal recogniti 94.5 0.13 4.3E-06 53.1 9.5 24 207-230 99-122 (443)
179 3kl4_A SRP54, signal recogniti 94.4 0.16 5.4E-06 52.3 10.2 25 207-231 96-120 (433)
180 2jaq_A Deoxyguanosine kinase; 94.4 0.018 6.2E-07 52.6 2.8 22 210-231 2-23 (205)
181 2hf9_A Probable hydrogenase ni 94.4 0.035 1.2E-06 51.7 4.8 25 207-231 37-61 (226)
182 2plr_A DTMP kinase, probable t 94.4 0.021 7.1E-07 52.6 3.2 24 208-231 4-27 (213)
183 2cdn_A Adenylate kinase; phosp 94.4 0.021 7.3E-07 52.3 3.2 25 206-230 18-42 (201)
184 2if2_A Dephospho-COA kinase; a 94.3 0.02 7E-07 52.5 3.0 21 210-230 3-23 (204)
185 2bwj_A Adenylate kinase 5; pho 94.3 0.019 6.5E-07 52.3 2.7 23 208-230 12-34 (199)
186 1lvg_A Guanylate kinase, GMP k 94.3 0.016 5.6E-07 53.0 2.2 23 208-230 4-26 (198)
187 1jjv_A Dephospho-COA kinase; P 94.3 0.024 8.1E-07 52.1 3.3 22 209-230 3-24 (206)
188 3ney_A 55 kDa erythrocyte memb 94.3 0.021 7E-07 52.2 2.8 24 207-230 18-41 (197)
189 3gd7_A Fusion complex of cysti 94.2 0.19 6.5E-06 51.0 10.2 23 208-230 47-69 (390)
190 1cke_A CK, MSSA, protein (cyti 94.2 0.021 7E-07 53.4 2.9 22 209-230 6-27 (227)
191 2iyv_A Shikimate kinase, SK; t 94.2 0.015 5.2E-07 52.4 1.8 21 210-230 4-24 (184)
192 1q57_A DNA primase/helicase; d 94.2 0.14 4.9E-06 54.1 9.7 54 207-263 241-294 (503)
193 2xxa_A Signal recognition part 94.2 0.13 4.3E-06 53.2 9.0 26 206-231 98-123 (433)
194 1xjc_A MOBB protein homolog; s 94.2 0.021 7.1E-07 50.8 2.6 25 207-231 3-27 (169)
195 1via_A Shikimate kinase; struc 94.2 0.02 7E-07 51.1 2.6 22 209-230 5-26 (175)
196 2vli_A Antibiotic resistance p 94.2 0.014 4.9E-07 52.3 1.5 23 208-230 5-27 (183)
197 2bbw_A Adenylate kinase 4, AK4 94.1 0.023 7.7E-07 54.0 2.9 23 208-230 27-49 (246)
198 1nn5_A Similar to deoxythymidy 94.1 0.025 8.4E-07 52.3 3.1 24 208-231 9-32 (215)
199 1e6c_A Shikimate kinase; phosp 94.1 0.018 6.3E-07 51.1 2.0 22 209-230 3-24 (173)
200 1uj2_A Uridine-cytidine kinase 94.0 0.026 8.9E-07 53.8 3.2 25 206-230 20-44 (252)
201 1aky_A Adenylate kinase; ATP:A 94.0 0.023 8E-07 52.9 2.8 23 208-230 4-26 (220)
202 1sq5_A Pantothenate kinase; P- 94.0 0.058 2E-06 53.1 5.8 25 206-230 78-102 (308)
203 3aez_A Pantothenate kinase; tr 94.0 0.028 9.7E-07 55.4 3.5 25 206-230 88-112 (312)
204 2wsm_A Hydrogenase expression/ 94.0 0.038 1.3E-06 51.2 4.2 39 186-231 15-53 (221)
205 2wwf_A Thymidilate kinase, put 94.0 0.024 8.2E-07 52.2 2.8 24 208-231 10-33 (212)
206 1j8m_F SRP54, signal recogniti 94.0 0.23 7.8E-06 48.5 9.9 87 208-296 98-189 (297)
207 2pez_A Bifunctional 3'-phospho 94.0 0.029 9.9E-07 50.2 3.2 24 207-230 4-27 (179)
208 2pbr_A DTMP kinase, thymidylat 94.0 0.026 8.8E-07 51.1 2.8 21 210-230 2-22 (195)
209 2pt5_A Shikimate kinase, SK; a 93.9 0.026 8.8E-07 49.9 2.8 21 210-230 2-22 (168)
210 1znw_A Guanylate kinase, GMP k 93.9 0.027 9.1E-07 52.0 2.9 23 208-230 20-42 (207)
211 3e70_C DPA, signal recognition 93.9 0.18 6E-06 50.0 9.0 25 206-230 127-151 (328)
212 1zd8_A GTP:AMP phosphotransfer 93.9 0.026 8.9E-07 52.8 2.8 23 208-230 7-29 (227)
213 2jeo_A Uridine-cytidine kinase 93.9 0.031 1.1E-06 53.0 3.4 24 207-230 24-47 (245)
214 1gtv_A TMK, thymidylate kinase 93.9 0.019 6.5E-07 53.0 1.8 22 210-231 2-23 (214)
215 3b5x_A Lipid A export ATP-bind 93.8 0.24 8.4E-06 53.3 10.7 24 207-230 368-391 (582)
216 2f6r_A COA synthase, bifunctio 93.8 0.036 1.2E-06 53.9 3.7 25 206-230 73-97 (281)
217 1fx0_B ATP synthase beta chain 93.8 0.16 5.6E-06 52.6 8.7 54 207-261 164-218 (498)
218 1z6g_A Guanylate kinase; struc 93.8 0.024 8.2E-07 52.8 2.3 23 208-230 23-45 (218)
219 3fwy_A Light-independent proto 93.8 0.032 1.1E-06 55.1 3.3 25 206-230 46-70 (314)
220 2j37_W Signal recognition part 93.8 0.34 1.2E-05 50.9 11.3 25 206-230 99-123 (504)
221 2pt7_A CAG-ALFA; ATPase, prote 93.8 0.063 2.1E-06 53.4 5.5 105 209-328 172-276 (330)
222 1htw_A HI0065; nucleotide-bind 93.8 0.038 1.3E-06 48.5 3.4 24 207-230 32-55 (158)
223 1s96_A Guanylate kinase, GMP k 93.7 0.03 1E-06 52.2 2.9 24 207-230 15-38 (219)
224 2grj_A Dephospho-COA kinase; T 93.7 0.038 1.3E-06 50.3 3.5 25 206-230 10-34 (192)
225 2ffh_A Protein (FFH); SRP54, s 93.7 0.22 7.4E-06 51.2 9.4 24 208-231 98-121 (425)
226 1ls1_A Signal recognition part 93.7 0.2 6.9E-06 48.9 8.9 24 208-231 98-121 (295)
227 1rj9_A FTSY, signal recognitio 93.7 0.032 1.1E-06 54.8 3.1 24 207-230 101-124 (304)
228 2v54_A DTMP kinase, thymidylat 93.7 0.031 1.1E-06 51.1 2.9 24 208-231 4-27 (204)
229 2yhs_A FTSY, cell division pro 93.7 0.23 8E-06 51.7 9.7 25 206-230 291-315 (503)
230 2r6a_A DNAB helicase, replicat 93.6 0.12 4.1E-06 53.9 7.7 52 207-261 202-253 (454)
231 2z0h_A DTMP kinase, thymidylat 93.6 0.032 1.1E-06 50.7 2.8 22 210-231 2-23 (197)
232 1zak_A Adenylate kinase; ATP:A 93.6 0.027 9.3E-07 52.5 2.4 23 208-230 5-27 (222)
233 2f1r_A Molybdopterin-guanine d 93.6 0.025 8.7E-07 50.4 2.1 22 209-230 3-24 (171)
234 1m7g_A Adenylylsulfate kinase; 93.6 0.037 1.3E-06 51.1 3.3 25 207-231 24-48 (211)
235 3fb4_A Adenylate kinase; psych 93.6 0.033 1.1E-06 51.6 2.8 21 210-230 2-22 (216)
236 3llm_A ATP-dependent RNA helic 93.5 0.21 7.2E-06 46.8 8.5 20 209-228 77-96 (235)
237 4e22_A Cytidylate kinase; P-lo 93.5 0.035 1.2E-06 53.0 2.9 23 208-230 27-49 (252)
238 3upu_A ATP-dependent DNA helic 93.5 0.051 1.7E-06 56.8 4.5 22 210-231 47-68 (459)
239 1tue_A Replication protein E1; 93.5 0.053 1.8E-06 49.5 3.9 37 189-231 45-81 (212)
240 2q6t_A DNAB replication FORK h 93.4 0.22 7.6E-06 51.7 9.3 54 207-263 199-252 (444)
241 3tif_A Uncharacterized ABC tra 93.4 0.055 1.9E-06 51.0 4.2 23 208-230 31-53 (235)
242 3p32_A Probable GTPase RV1496/ 93.4 0.07 2.4E-06 53.7 5.2 37 189-230 65-101 (355)
243 3dl0_A Adenylate kinase; phosp 93.4 0.036 1.2E-06 51.3 2.8 21 210-230 2-22 (216)
244 1vht_A Dephospho-COA kinase; s 93.4 0.042 1.4E-06 51.0 3.3 23 208-230 4-26 (218)
245 2pcj_A ABC transporter, lipopr 93.3 0.063 2.1E-06 50.2 4.4 23 208-230 30-52 (224)
246 2onk_A Molybdate/tungstate ABC 93.3 0.064 2.2E-06 50.7 4.4 22 209-230 25-46 (240)
247 3be4_A Adenylate kinase; malar 93.3 0.038 1.3E-06 51.3 2.7 23 208-230 5-27 (217)
248 3hjn_A DTMP kinase, thymidylat 93.2 0.17 5.8E-06 46.1 7.0 22 210-231 2-23 (197)
249 3cmu_A Protein RECA, recombina 93.2 0.12 4.1E-06 62.7 7.5 84 206-296 1425-1514(2050)
250 3gfo_A Cobalt import ATP-bindi 93.1 0.066 2.3E-06 51.7 4.2 23 208-230 34-56 (275)
251 2ehv_A Hypothetical protein PH 93.1 0.045 1.5E-06 51.7 3.0 24 207-230 29-52 (251)
252 3k1j_A LON protease, ATP-depen 93.1 0.057 2E-06 58.6 4.2 43 180-231 41-83 (604)
253 3b9q_A Chloroplast SRP recepto 93.0 0.051 1.8E-06 53.3 3.4 25 206-230 98-122 (302)
254 1b0u_A Histidine permease; ABC 93.0 0.068 2.3E-06 51.2 4.2 23 208-230 32-54 (262)
255 1tf7_A KAIC; homohexamer, hexa 93.0 0.075 2.6E-06 56.6 4.9 25 207-231 280-304 (525)
256 3lnc_A Guanylate kinase, GMP k 92.9 0.032 1.1E-06 52.3 1.7 23 208-230 27-50 (231)
257 1np6_A Molybdopterin-guanine d 92.9 0.048 1.6E-06 48.7 2.7 25 207-231 5-29 (174)
258 3b60_A Lipid A export ATP-bind 92.8 0.25 8.6E-06 53.2 8.8 23 208-230 369-391 (582)
259 2i3b_A HCR-ntpase, human cance 92.8 0.044 1.5E-06 49.7 2.4 22 210-231 3-24 (189)
260 3ake_A Cytidylate kinase; CMP 92.8 0.051 1.7E-06 49.8 2.8 21 210-230 4-24 (208)
261 3a8t_A Adenylate isopentenyltr 92.8 0.062 2.1E-06 53.2 3.5 25 207-231 39-63 (339)
262 1e4v_A Adenylate kinase; trans 92.8 0.054 1.8E-06 50.1 3.0 21 210-230 2-22 (214)
263 2ged_A SR-beta, signal recogni 92.7 0.087 3E-06 47.4 4.3 26 206-231 46-71 (193)
264 2olj_A Amino acid ABC transpor 92.7 0.079 2.7E-06 50.8 4.1 23 208-230 50-72 (263)
265 1ji0_A ABC transporter; ATP bi 92.7 0.084 2.9E-06 49.9 4.2 23 208-230 32-54 (240)
266 2xb4_A Adenylate kinase; ATP-b 92.6 0.054 1.9E-06 50.5 2.8 21 210-230 2-22 (223)
267 3nwj_A ATSK2; P loop, shikimat 92.6 0.042 1.4E-06 52.3 2.0 22 209-230 49-70 (250)
268 1yrb_A ATP(GTP)binding protein 92.6 0.082 2.8E-06 50.4 4.2 26 206-231 12-37 (262)
269 3d3q_A TRNA delta(2)-isopenten 92.6 0.058 2E-06 53.6 3.1 22 209-230 8-29 (340)
270 1g6h_A High-affinity branched- 92.6 0.085 2.9E-06 50.4 4.2 23 208-230 33-55 (257)
271 2ck3_D ATP synthase subunit be 92.6 0.33 1.1E-05 50.2 8.7 65 191-262 142-207 (482)
272 1oix_A RAS-related protein RAB 92.6 0.079 2.7E-06 47.9 3.8 24 208-231 29-52 (191)
273 1g41_A Heat shock protein HSLU 92.6 0.091 3.1E-06 54.2 4.6 52 180-231 15-73 (444)
274 2wji_A Ferrous iron transport 92.6 0.076 2.6E-06 46.6 3.6 23 209-231 4-26 (165)
275 1ak2_A Adenylate kinase isoenz 92.6 0.057 1.9E-06 50.7 2.9 24 208-231 16-39 (233)
276 1sgw_A Putative ABC transporte 92.6 0.075 2.6E-06 49.2 3.7 22 209-230 36-57 (214)
277 2ixe_A Antigen peptide transpo 92.5 0.087 3E-06 50.8 4.2 23 208-230 45-67 (271)
278 1ltq_A Polynucleotide kinase; 92.5 0.059 2E-06 52.7 3.1 22 209-230 3-24 (301)
279 3b85_A Phosphate starvation-in 92.5 0.082 2.8E-06 48.7 3.8 22 209-230 23-44 (208)
280 3sr0_A Adenylate kinase; phosp 92.5 0.059 2E-06 49.6 2.8 21 210-230 2-22 (206)
281 1vpl_A ABC transporter, ATP-bi 92.5 0.09 3.1E-06 50.2 4.2 23 208-230 41-63 (256)
282 3r20_A Cytidylate kinase; stru 92.5 0.059 2E-06 50.6 2.9 23 208-230 9-31 (233)
283 2zej_A Dardarin, leucine-rich 92.5 0.055 1.9E-06 48.5 2.6 22 210-231 4-25 (184)
284 1zu4_A FTSY; GTPase, signal re 92.5 0.15 5.2E-06 50.3 6.0 25 206-230 103-127 (320)
285 3zvl_A Bifunctional polynucleo 92.4 0.06 2E-06 55.5 3.1 26 206-231 256-281 (416)
286 3foz_A TRNA delta(2)-isopenten 92.4 0.071 2.4E-06 52.0 3.4 25 206-230 8-32 (316)
287 2xau_A PRE-mRNA-splicing facto 92.4 0.8 2.7E-05 51.0 12.4 33 188-229 98-130 (773)
288 3crm_A TRNA delta(2)-isopenten 92.4 0.069 2.4E-06 52.6 3.3 23 208-230 5-27 (323)
289 3cmw_A Protein RECA, recombina 92.4 0.21 7E-06 59.9 7.8 84 207-297 382-471 (1706)
290 3e1s_A Exodeoxyribonuclease V, 92.4 0.47 1.6E-05 50.9 10.1 22 209-230 205-226 (574)
291 1q3t_A Cytidylate kinase; nucl 92.4 0.063 2.2E-06 50.5 2.9 25 206-230 14-38 (236)
292 3vr4_D V-type sodium ATPase su 92.4 0.11 3.6E-06 53.5 4.7 88 209-296 152-257 (465)
293 3exa_A TRNA delta(2)-isopenten 92.3 0.068 2.3E-06 52.2 3.2 24 208-231 3-26 (322)
294 2og2_A Putative signal recogni 92.3 0.071 2.4E-06 53.5 3.3 25 206-230 155-179 (359)
295 2wjg_A FEOB, ferrous iron tran 92.3 0.11 3.6E-06 46.6 4.3 25 207-231 6-30 (188)
296 3cmu_A Protein RECA, recombina 92.3 0.22 7.5E-06 60.5 8.0 84 207-297 382-471 (2050)
297 3ozx_A RNAse L inhibitor; ATP 92.3 0.62 2.1E-05 49.5 10.7 25 206-230 23-47 (538)
298 2yz2_A Putative ABC transporte 92.2 0.1 3.4E-06 50.2 4.2 23 208-230 33-55 (266)
299 3bgw_A DNAB-like replicative h 92.2 0.48 1.6E-05 49.1 9.7 53 207-263 196-248 (444)
300 1tf7_A KAIC; homohexamer, hexa 92.2 0.2 6.7E-06 53.3 6.9 40 207-248 38-78 (525)
301 2vp4_A Deoxynucleoside kinase; 92.2 0.066 2.2E-06 50.2 2.8 25 206-230 18-42 (230)
302 2dyk_A GTP-binding protein; GT 92.2 0.079 2.7E-06 45.9 3.2 23 209-231 2-24 (161)
303 1ny5_A Transcriptional regulat 92.2 0.72 2.4E-05 46.8 10.8 46 181-231 138-183 (387)
304 3dzd_A Transcriptional regulat 92.1 0.097 3.3E-06 52.9 4.1 47 180-231 129-175 (368)
305 2fz4_A DNA repair protein RAD2 92.1 0.6 2E-05 43.8 9.4 100 211-324 111-226 (237)
306 2eyu_A Twitching motility prot 92.1 0.078 2.7E-06 50.8 3.2 111 207-329 24-135 (261)
307 3j16_B RLI1P; ribosome recycli 92.1 0.63 2.1E-05 50.2 10.6 125 209-333 379-534 (608)
308 3qf4_A ABC transporter, ATP-bi 92.0 0.48 1.6E-05 51.1 9.7 23 208-230 369-391 (587)
309 2ihy_A ABC transporter, ATP-bi 92.0 0.11 3.8E-06 50.3 4.2 23 208-230 47-69 (279)
310 3l0o_A Transcription terminati 92.0 0.46 1.6E-05 47.7 8.6 36 190-231 163-198 (427)
311 1a7j_A Phosphoribulokinase; tr 92.0 0.035 1.2E-06 54.2 0.6 24 207-230 4-27 (290)
312 2d2e_A SUFC protein; ABC-ATPas 92.0 0.077 2.6E-06 50.5 3.0 23 208-230 29-51 (250)
313 2qmh_A HPR kinase/phosphorylas 92.0 0.079 2.7E-06 48.1 2.9 24 208-231 34-57 (205)
314 3j16_B RLI1P; ribosome recycli 91.9 0.85 2.9E-05 49.1 11.5 24 207-230 102-125 (608)
315 3end_A Light-independent proto 91.9 0.15 5E-06 50.1 5.1 43 206-250 39-81 (307)
316 4a82_A Cystic fibrosis transme 91.9 0.27 9.2E-06 53.0 7.6 24 207-230 366-389 (578)
317 2v9p_A Replication protein E1; 91.9 0.076 2.6E-06 52.0 2.9 24 207-230 125-148 (305)
318 2f9l_A RAB11B, member RAS onco 91.9 0.07 2.4E-06 48.5 2.6 24 208-231 5-28 (199)
319 2ce2_X GTPase HRAS; signaling 91.9 0.082 2.8E-06 45.8 2.9 22 210-231 5-26 (166)
320 2j9r_A Thymidine kinase; TK1, 91.8 0.18 6.1E-06 46.4 5.1 111 207-328 27-139 (214)
321 3gqb_B V-type ATP synthase bet 91.8 0.13 4.3E-06 52.9 4.5 89 208-296 147-260 (464)
322 4eaq_A DTMP kinase, thymidylat 91.8 0.091 3.1E-06 49.2 3.3 25 207-231 25-49 (229)
323 2zu0_C Probable ATP-dependent 91.8 0.082 2.8E-06 50.8 3.0 23 208-230 46-68 (267)
324 2yl4_A ATP-binding cassette SU 91.8 0.26 9E-06 53.2 7.3 23 208-230 370-392 (595)
325 3qf4_B Uncharacterized ABC tra 91.8 0.22 7.5E-06 53.9 6.7 24 207-230 380-403 (598)
326 1svm_A Large T antigen; AAA+ f 91.7 0.14 4.8E-06 51.8 4.8 25 206-230 167-191 (377)
327 2ocp_A DGK, deoxyguanosine kin 91.7 0.096 3.3E-06 49.4 3.3 24 208-231 2-25 (241)
328 2ghi_A Transport protein; mult 91.6 0.077 2.6E-06 50.8 2.6 24 208-231 46-69 (260)
329 1nlf_A Regulatory protein REPA 91.5 0.094 3.2E-06 50.7 3.2 23 208-230 30-52 (279)
330 2qi9_C Vitamin B12 import ATP- 91.5 0.087 3E-06 50.1 2.8 23 208-230 26-48 (249)
331 1u0j_A DNA replication protein 91.5 0.16 5.4E-06 48.5 4.6 36 190-230 91-126 (267)
332 3cmw_A Protein RECA, recombina 91.5 0.23 7.8E-06 59.5 6.8 84 206-296 1429-1518(1706)
333 1svi_A GTP-binding protein YSX 91.4 0.13 4.3E-06 46.3 3.7 25 207-231 22-46 (195)
334 2nzj_A GTP-binding protein REM 91.4 0.14 4.7E-06 45.0 3.9 24 208-231 4-27 (175)
335 2r9v_A ATP synthase subunit al 91.4 0.29 1E-05 50.8 6.8 86 207-296 174-276 (515)
336 2lkc_A Translation initiation 91.4 0.14 4.8E-06 45.1 4.0 26 206-231 6-31 (178)
337 3fvq_A Fe(3+) IONS import ATP- 91.3 0.16 5.4E-06 50.9 4.6 23 208-230 30-52 (359)
338 3q72_A GTP-binding protein RAD 91.3 0.091 3.1E-06 45.8 2.6 22 210-231 4-25 (166)
339 2iw3_A Elongation factor 3A; a 91.3 1.2 4E-05 50.5 12.1 118 209-332 462-610 (986)
340 1z2a_A RAS-related protein RAB 91.3 0.13 4.3E-06 44.9 3.5 24 208-231 5-28 (168)
341 2fn4_A P23, RAS-related protei 91.2 0.16 5.5E-06 44.8 4.2 26 206-231 7-32 (181)
342 3q85_A GTP-binding protein REM 91.2 0.1 3.5E-06 45.6 2.8 22 209-230 3-24 (169)
343 3sop_A Neuronal-specific septi 91.2 0.11 3.8E-06 50.0 3.2 21 210-230 4-24 (270)
344 1u8z_A RAS-related protein RAL 91.1 0.1 3.5E-06 45.3 2.7 24 208-231 4-27 (168)
345 2erx_A GTP-binding protein DI- 91.1 0.11 3.6E-06 45.5 2.8 23 209-231 4-26 (172)
346 3con_A GTPase NRAS; structural 91.1 0.1 3.5E-06 46.8 2.7 23 209-231 22-44 (190)
347 2cxx_A Probable GTP-binding pr 91.1 0.12 4.1E-06 46.2 3.2 22 210-231 3-24 (190)
348 1nij_A Hypothetical protein YJ 91.0 0.11 3.8E-06 51.4 3.1 25 207-231 3-27 (318)
349 2hxs_A RAB-26, RAS-related pro 91.0 0.17 6E-06 44.5 4.2 25 207-231 5-29 (178)
350 2gj8_A MNME, tRNA modification 91.0 0.14 4.7E-06 45.4 3.5 23 209-231 5-27 (172)
351 4edh_A DTMP kinase, thymidylat 91.0 0.27 9.3E-06 45.4 5.5 24 208-231 6-29 (213)
352 1c1y_A RAS-related protein RAP 90.9 0.11 3.7E-06 45.2 2.7 22 210-231 5-26 (167)
353 1kao_A RAP2A; GTP-binding prot 90.9 0.11 3.8E-06 45.1 2.8 22 210-231 5-26 (167)
354 1fzq_A ADP-ribosylation factor 90.9 0.14 4.9E-06 45.6 3.5 25 207-231 15-39 (181)
355 3pqc_A Probable GTP-binding pr 90.9 0.14 5E-06 45.8 3.6 24 208-231 23-46 (195)
356 1ek0_A Protein (GTP-binding pr 90.9 0.11 3.8E-06 45.3 2.7 22 210-231 5-26 (170)
357 1z0j_A RAB-22, RAS-related pro 90.8 0.11 3.9E-06 45.3 2.8 24 208-231 6-29 (170)
358 1z08_A RAS-related protein RAB 90.8 0.14 4.9E-06 44.7 3.4 25 207-231 5-29 (170)
359 1g16_A RAS-related protein SEC 90.8 0.12 4.1E-06 45.1 2.9 23 209-231 4-26 (170)
360 3ld9_A DTMP kinase, thymidylat 90.8 0.21 7.1E-06 46.5 4.6 26 206-231 19-44 (223)
361 3v9p_A DTMP kinase, thymidylat 90.8 0.26 9E-06 45.9 5.3 24 208-231 25-48 (227)
362 3ihw_A Centg3; RAS, centaurin, 90.7 0.12 4E-06 46.4 2.7 24 208-231 20-43 (184)
363 1m7b_A RND3/RHOE small GTP-bin 90.7 0.16 5.5E-06 45.3 3.7 25 207-231 6-30 (184)
364 1f6b_A SAR1; gtpases, N-termin 90.7 0.12 4E-06 47.0 2.7 23 209-231 26-48 (198)
365 1xx6_A Thymidine kinase; NESG, 90.7 0.078 2.7E-06 48.1 1.5 109 208-327 8-118 (191)
366 1p5z_B DCK, deoxycytidine kina 90.7 0.084 2.9E-06 50.6 1.8 25 207-231 23-47 (263)
367 1nrj_B SR-beta, signal recogni 90.6 0.13 4.4E-06 47.4 3.0 26 206-231 10-35 (218)
368 1ky3_A GTP-binding protein YPT 90.6 0.16 5.4E-06 44.9 3.5 25 207-231 7-31 (182)
369 1r8s_A ADP-ribosylation factor 90.6 0.12 4E-06 45.0 2.6 20 211-230 3-22 (164)
370 2qm8_A GTPase/ATPase; G protei 90.6 0.21 7.1E-06 49.8 4.7 25 206-230 53-77 (337)
371 4bas_A ADP-ribosylation factor 90.6 0.14 4.9E-06 46.1 3.3 26 206-231 15-40 (199)
372 3c5c_A RAS-like protein 12; GD 90.6 0.12 4.2E-06 46.3 2.8 24 208-231 21-44 (187)
373 3kta_A Chromosome segregation 90.5 0.14 4.9E-06 45.6 3.2 21 210-230 28-48 (182)
374 2iwr_A Centaurin gamma 1; ANK 90.5 0.11 3.7E-06 46.0 2.4 23 209-231 8-30 (178)
375 3eph_A TRNA isopentenyltransfe 90.5 0.14 4.7E-06 51.9 3.3 22 209-230 3-24 (409)
376 3cph_A RAS-related protein SEC 90.5 0.14 4.9E-06 46.8 3.2 24 208-231 20-43 (213)
377 3f9v_A Minichromosome maintena 90.5 0.082 2.8E-06 57.1 1.7 22 210-231 329-350 (595)
378 2www_A Methylmalonic aciduria 90.5 0.15 5.1E-06 51.1 3.5 24 207-230 73-96 (349)
379 3lv8_A DTMP kinase, thymidylat 90.5 0.23 7.9E-06 46.6 4.6 24 208-231 27-50 (236)
380 2c61_A A-type ATP synthase non 90.5 0.19 6.4E-06 51.9 4.2 89 208-296 152-258 (469)
381 1m2o_B GTP-binding protein SAR 90.4 0.14 4.7E-06 46.2 2.9 23 209-231 24-46 (190)
382 1z47_A CYSA, putative ABC-tran 90.4 0.21 7.1E-06 50.0 4.4 23 208-230 41-63 (355)
383 1r2q_A RAS-related protein RAB 90.4 0.13 4.5E-06 44.8 2.7 24 208-231 6-29 (170)
384 2bbs_A Cystic fibrosis transme 90.4 0.13 4.3E-06 50.1 2.8 24 208-231 64-87 (290)
385 3vkw_A Replicase large subunit 90.4 0.38 1.3E-05 49.4 6.4 26 205-230 158-183 (446)
386 1tq4_A IIGP1, interferon-induc 90.3 0.14 4.9E-06 52.3 3.3 24 207-230 68-91 (413)
387 2y8e_A RAB-protein 6, GH09086P 90.3 0.14 4.8E-06 45.1 2.9 23 209-231 15-37 (179)
388 4f4c_A Multidrug resistance pr 90.3 0.76 2.6E-05 54.5 9.9 24 207-230 443-466 (1321)
389 3rlf_A Maltose/maltodextrin im 90.3 0.21 7.3E-06 50.4 4.4 23 208-230 29-51 (381)
390 2yyz_A Sugar ABC transporter, 90.2 0.22 7.4E-06 50.0 4.4 23 208-230 29-51 (359)
391 1pui_A ENGB, probable GTP-bind 90.2 0.092 3.2E-06 48.0 1.6 25 207-231 25-49 (210)
392 1wms_A RAB-9, RAB9, RAS-relate 90.2 0.17 5.7E-06 44.6 3.3 25 207-231 6-30 (177)
393 2it1_A 362AA long hypothetical 90.2 0.22 7.5E-06 50.0 4.4 23 208-230 29-51 (362)
394 1g29_1 MALK, maltose transport 90.1 0.22 7.5E-06 50.2 4.4 23 208-230 29-51 (372)
395 4dsu_A GTPase KRAS, isoform 2B 90.1 0.14 4.8E-06 45.6 2.8 23 209-231 5-27 (189)
396 1v43_A Sugar-binding transport 90.1 0.22 7.6E-06 50.2 4.4 23 208-230 37-59 (372)
397 2p67_A LAO/AO transport system 90.1 0.25 8.5E-06 49.3 4.8 25 206-230 54-78 (341)
398 2cjw_A GTP-binding protein GEM 90.1 0.14 4.8E-06 46.2 2.8 23 208-230 6-28 (192)
399 3t1o_A Gliding protein MGLA; G 90.1 0.13 4.6E-06 46.1 2.6 23 208-230 14-36 (198)
400 2axn_A 6-phosphofructo-2-kinas 90.1 0.15 5.2E-06 54.0 3.3 24 207-230 34-57 (520)
401 3t5g_A GTP-binding protein RHE 90.1 0.17 6E-06 44.7 3.3 25 207-231 5-29 (181)
402 3kkq_A RAS-related protein M-R 90.1 0.21 7.3E-06 44.3 3.9 25 207-231 17-41 (183)
403 1z0f_A RAB14, member RAS oncog 90.1 0.2 6.7E-06 44.1 3.6 26 206-231 13-38 (179)
404 2afh_E Nitrogenase iron protei 90.0 0.17 5.9E-06 49.0 3.5 39 208-248 2-40 (289)
405 3tw8_B RAS-related protein RAB 90.0 0.18 6.1E-06 44.5 3.3 26 206-231 7-32 (181)
406 1mh1_A RAC1; GTP-binding, GTPa 90.0 0.15 5E-06 45.4 2.7 24 208-231 5-28 (186)
407 1cp2_A CP2, nitrogenase iron p 90.0 0.17 5.9E-06 48.4 3.4 38 209-248 2-39 (269)
408 3iev_A GTP-binding protein ERA 89.9 0.19 6.6E-06 49.3 3.8 27 205-231 7-33 (308)
409 3llu_A RAS-related GTP-binding 89.9 0.16 5.5E-06 45.9 3.0 24 208-231 20-43 (196)
410 1oxx_K GLCV, glucose, ABC tran 89.9 0.19 6.4E-06 50.4 3.7 23 208-230 31-53 (353)
411 3cbq_A GTP-binding protein REM 89.9 0.16 5.3E-06 46.1 2.9 24 207-230 22-45 (195)
412 2v3c_C SRP54, signal recogniti 89.9 0.098 3.4E-06 54.0 1.6 25 207-231 98-122 (432)
413 3bwd_D RAC-like GTP-binding pr 89.9 0.15 5.2E-06 45.1 2.7 23 209-231 9-31 (182)
414 1upt_A ARL1, ADP-ribosylation 89.8 0.2 6.7E-06 43.8 3.4 24 208-231 7-30 (171)
415 2bme_A RAB4A, RAS-related prot 89.8 0.24 8.2E-06 44.0 4.1 25 207-231 9-33 (186)
416 2a9k_A RAS-related protein RAL 89.8 0.15 5.3E-06 45.2 2.7 24 208-231 18-41 (187)
417 2qe7_A ATP synthase subunit al 89.8 0.64 2.2E-05 48.2 7.6 86 207-296 161-263 (502)
418 3bc1_A RAS-related protein RAB 89.8 0.22 7.5E-06 44.5 3.8 26 206-231 9-34 (195)
419 1gwn_A RHO-related GTP-binding 89.8 0.16 5.6E-06 46.4 2.9 24 208-231 28-51 (205)
420 1lw7_A Transcriptional regulat 89.8 0.17 5.9E-06 51.0 3.3 23 208-230 170-192 (365)
421 2ew1_A RAS-related protein RAB 89.8 0.16 5.6E-06 46.2 2.9 25 207-231 25-49 (201)
422 2atv_A RERG, RAS-like estrogen 89.7 0.16 5.4E-06 45.9 2.8 24 208-231 28-51 (196)
423 2fg5_A RAB-22B, RAS-related pr 89.7 0.17 5.7E-06 45.6 2.9 24 208-231 23-46 (192)
424 1h65_A Chloroplast outer envel 89.7 0.4 1.4E-05 45.9 5.7 25 207-231 38-62 (270)
425 1ega_A Protein (GTP-binding pr 89.7 0.19 6.4E-06 49.2 3.4 25 207-231 7-31 (301)
426 1g8f_A Sulfate adenylyltransfe 89.6 0.19 6.5E-06 52.8 3.6 46 181-231 373-418 (511)
427 1zbd_A Rabphilin-3A; G protein 89.6 0.17 5.9E-06 45.8 3.0 25 207-231 7-31 (203)
428 3def_A T7I23.11 protein; chlor 89.6 0.39 1.3E-05 45.8 5.6 25 207-231 35-59 (262)
429 2aka_B Dynamin-1; fusion prote 89.6 0.39 1.3E-05 46.6 5.7 42 189-231 8-49 (299)
430 2bov_A RAla, RAS-related prote 89.6 0.23 7.8E-06 45.0 3.8 25 207-231 13-37 (206)
431 2qu8_A Putative nucleolar GTP- 89.5 0.2 7E-06 46.5 3.4 25 207-231 28-52 (228)
432 4tmk_A Protein (thymidylate ki 89.5 0.33 1.1E-05 44.8 4.8 23 209-231 4-26 (213)
433 3tqf_A HPR(Ser) kinase; transf 89.5 0.22 7.4E-06 44.0 3.3 22 209-230 17-38 (181)
434 3dz8_A RAS-related protein RAB 89.5 0.17 5.8E-06 45.5 2.8 23 209-231 24-46 (191)
435 2efe_B Small GTP-binding prote 89.5 0.21 7.2E-06 44.1 3.4 25 207-231 11-35 (181)
436 2oil_A CATX-8, RAS-related pro 89.5 0.24 8E-06 44.5 3.7 25 207-231 24-48 (193)
437 2b6h_A ADP-ribosylation factor 89.5 0.17 5.8E-06 45.7 2.7 24 208-231 29-52 (192)
438 3oes_A GTPase rhebl1; small GT 89.5 0.17 5.8E-06 45.9 2.8 25 207-231 23-47 (201)
439 2o52_A RAS-related protein RAB 89.5 0.18 6.3E-06 45.7 3.0 25 207-231 24-48 (200)
440 1ksh_A ARF-like protein 2; sma 89.5 0.17 5.8E-06 45.1 2.7 25 208-232 18-42 (186)
441 4dkx_A RAS-related protein RAB 89.5 0.17 5.7E-06 46.9 2.7 22 210-231 15-36 (216)
442 4gzl_A RAS-related C3 botulinu 89.5 0.21 7.1E-06 45.5 3.4 24 208-231 30-53 (204)
443 3clv_A RAB5 protein, putative; 89.5 0.17 5.8E-06 45.6 2.8 24 208-231 7-30 (208)
444 2g3y_A GTP-binding protein GEM 89.4 0.18 6E-06 46.6 2.8 23 208-230 37-59 (211)
445 2ewv_A Twitching motility prot 89.4 0.19 6.4E-06 50.9 3.2 108 207-328 135-245 (372)
446 1moz_A ARL1, ADP-ribosylation 89.4 0.18 6.3E-06 44.7 2.9 24 208-231 18-41 (183)
447 2qnr_A Septin-2, protein NEDD5 89.4 0.17 6E-06 49.5 2.9 20 211-230 21-40 (301)
448 1zd9_A ADP-ribosylation factor 89.4 0.18 6E-06 45.3 2.7 24 208-231 22-45 (188)
449 2yv5_A YJEQ protein; hydrolase 89.3 0.24 8.1E-06 48.5 3.9 31 189-229 156-186 (302)
450 3mfy_A V-type ATP synthase alp 89.3 0.46 1.6E-05 49.8 6.1 48 207-258 226-274 (588)
451 2fh5_B SR-beta, signal recogni 89.3 0.17 5.9E-06 46.3 2.7 24 208-231 7-30 (214)
452 3reg_A RHO-like small GTPase; 89.3 0.18 6.1E-06 45.4 2.7 25 207-231 22-46 (194)
453 2h92_A Cytidylate kinase; ross 89.2 0.15 5.2E-06 47.1 2.3 22 209-230 4-25 (219)
454 2h17_A ADP-ribosylation factor 89.2 0.24 8.3E-06 44.0 3.6 24 208-231 21-44 (181)
455 3oaa_A ATP synthase subunit al 89.2 0.92 3.1E-05 47.0 8.2 86 207-296 161-263 (513)
456 2q3h_A RAS homolog gene family 89.2 0.19 6.4E-06 45.5 2.8 24 208-231 20-43 (201)
457 2j1l_A RHO-related GTP-binding 89.1 0.2 6.8E-06 46.1 3.0 24 208-231 34-57 (214)
458 2g6b_A RAS-related protein RAB 89.1 0.27 9.1E-06 43.4 3.8 25 207-231 9-33 (180)
459 3lxx_A GTPase IMAP family memb 89.1 0.24 8.2E-06 46.5 3.6 25 207-231 28-52 (239)
460 2r8r_A Sensor protein; KDPD, P 89.1 0.24 8.1E-06 46.0 3.4 23 209-231 7-29 (228)
461 3cr8_A Sulfate adenylyltranfer 89.0 0.18 6.1E-06 53.7 2.9 24 207-230 368-391 (552)
462 1vg8_A RAS-related protein RAB 89.0 0.24 8.4E-06 44.9 3.5 25 207-231 7-31 (207)
463 3gmt_A Adenylate kinase; ssgci 89.0 0.18 6.2E-06 47.0 2.6 23 208-230 8-30 (230)
464 2ck3_A ATP synthase subunit al 89.0 0.77 2.6E-05 47.8 7.5 90 207-296 161-271 (510)
465 2bcg_Y Protein YP2, GTP-bindin 89.0 0.2 6.9E-06 45.5 2.9 25 207-231 7-31 (206)
466 2zts_A Putative uncharacterize 88.9 0.19 6.5E-06 47.2 2.8 40 207-247 29-68 (251)
467 2p5s_A RAS and EF-hand domain 88.9 0.19 6.5E-06 45.5 2.7 24 208-231 28-51 (199)
468 2gf9_A RAS-related protein RAB 88.9 0.29 9.8E-06 43.8 3.9 24 208-231 22-45 (189)
469 1x3s_A RAS-related protein RAB 88.9 0.2 6.8E-06 44.9 2.7 24 208-231 15-38 (195)
470 3ch4_B Pmkase, phosphomevalona 88.8 0.27 9.3E-06 44.7 3.6 25 206-230 9-33 (202)
471 1bif_A 6-phosphofructo-2-kinas 88.8 0.21 7E-06 52.3 3.2 24 208-231 39-62 (469)
472 3vkg_A Dynein heavy chain, cyt 88.8 1.3 4.4E-05 56.4 10.5 137 209-356 1305-1468(3245)
473 1zj6_A ADP-ribosylation factor 88.8 0.29 9.9E-06 43.7 3.8 24 208-231 16-39 (187)
474 3k53_A Ferrous iron transport 88.8 0.25 8.7E-06 47.4 3.6 24 208-231 3-26 (271)
475 3tkl_A RAS-related protein RAB 88.8 0.28 9.7E-06 43.9 3.8 25 207-231 15-39 (196)
476 2a5j_A RAS-related protein RAB 88.8 0.3 1E-05 43.8 3.9 24 208-231 21-44 (191)
477 2il1_A RAB12; G-protein, GDP, 88.8 0.25 8.4E-06 44.5 3.3 24 208-231 26-49 (192)
478 1fx0_A ATP synthase alpha chai 88.8 0.3 1E-05 50.8 4.2 40 207-250 162-203 (507)
479 2atx_A Small GTP binding prote 88.7 0.22 7.4E-06 44.8 2.9 24 208-231 18-41 (194)
480 2fv8_A H6, RHO-related GTP-bin 88.7 0.22 7.4E-06 45.5 2.9 24 208-231 25-48 (207)
481 4f4c_A Multidrug resistance pr 88.6 0.77 2.6E-05 54.4 8.2 23 208-230 1105-1127(1321)
482 1z06_A RAS-related protein RAB 88.6 0.27 9.3E-06 43.9 3.5 25 207-231 19-43 (189)
483 2gf0_A GTP-binding protein DI- 88.6 0.28 9.6E-06 44.1 3.6 24 208-231 8-31 (199)
484 4dhe_A Probable GTP-binding pr 88.6 0.2 6.8E-06 46.2 2.6 26 207-232 28-53 (223)
485 2j0v_A RAC-like GTP-binding pr 88.6 0.22 7.6E-06 45.5 2.9 24 208-231 9-32 (212)
486 2gza_A Type IV secretion syste 88.6 0.19 6.6E-06 50.5 2.7 23 209-231 176-198 (361)
487 2gco_A H9, RHO-related GTP-bin 88.5 0.23 7.8E-06 45.1 2.9 24 208-231 25-48 (201)
488 3vr4_A V-type sodium ATPase ca 88.4 0.49 1.7E-05 49.9 5.6 49 191-249 221-269 (600)
489 2h57_A ADP-ribosylation factor 88.4 0.18 6.1E-06 45.2 2.1 24 208-231 21-44 (190)
490 3b1v_A Ferrous iron uptake tra 88.3 0.31 1.1E-05 46.9 3.9 24 208-231 3-26 (272)
491 2hup_A RAS-related protein RAB 88.3 0.32 1.1E-05 44.2 3.7 25 207-231 28-52 (201)
492 2fu5_C RAS-related protein RAB 88.3 0.14 4.9E-06 45.4 1.3 25 207-231 7-31 (183)
493 3thx_A DNA mismatch repair pro 88.2 1.2 4.2E-05 50.3 9.2 22 207-228 661-682 (934)
494 2rcn_A Probable GTPase ENGC; Y 88.1 0.25 8.4E-06 49.5 3.0 23 209-231 216-238 (358)
495 3fdi_A Uncharacterized protein 88.1 0.26 9E-06 45.0 3.0 23 209-231 7-29 (201)
496 3q3j_B RHO-related GTP-binding 88.0 0.24 8.2E-06 45.6 2.7 23 209-231 28-50 (214)
497 2f7s_A C25KG, RAS-related prot 88.0 0.25 8.7E-06 45.3 2.9 25 207-231 24-48 (217)
498 1wf3_A GTP-binding protein; GT 88.0 0.34 1.2E-05 47.4 3.9 25 207-231 6-30 (301)
499 2orv_A Thymidine kinase; TP4A 87.9 0.86 3E-05 42.3 6.3 107 207-328 18-127 (234)
500 4b3f_X DNA-binding protein smu 87.9 0.42 1.5E-05 52.2 5.1 62 187-260 193-254 (646)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=3.1e-51 Score=446.01 Aligned_cols=316 Identities=16% Similarity=0.209 Sum_probs=258.3
Q ss_pred eechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHc--CccccccCceEEEEEeCCCC--ChHHHHHH
Q 036323 183 RGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYN--DNDVINNFEIRVRVCVSDPF--DEFNVAKA 258 (583)
Q Consensus 183 vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~~~~~f~~~~wv~~~~~~--~~~~~~~~ 258 (583)
|||+.++++|.++|.... ....++|+|+||||+||||||+++|+ +.++..+|++++|+++++.. +...++..
T Consensus 131 ~GR~~~~~~l~~~L~~~~----~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC----DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT----TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc----CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHH
Confidence 599999999999997542 24589999999999999999999998 67899999999999999875 78899999
Q ss_pred HHHHhhcCcc-------ccccHHHHHHHHHHHhcCC-ceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchHHH
Q 036323 259 TIEELEGSAI-------DLHELNSLLRRIGANIAGQ-KFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKETVA 330 (583)
Q Consensus 259 il~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~ 330 (583)
|+.+++.... +..+.+.+...+++.|.++ ||||||||||+.+...|.. .+||+||||||+..++
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v~ 278 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEIS 278 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGGG
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHHH
Confidence 9999986521 1234567788999999996 9999999999754222321 2799999999999999
Q ss_pred hhhcC-CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhhhhccCCCHHHHHHHHhh
Q 036323 331 RMMES-TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSLLQFKRTKEEWQSALDS 409 (583)
Q Consensus 331 ~~~~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~l~~ 409 (583)
..++. ..+|+|++|+.++||+||.+.++... .++.+.+++.+|+++|+|+||||+++|+.|+.+ + .+|...+.+
T Consensus 279 ~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~ 353 (549)
T 2a5y_B 279 NAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNN 353 (549)
T ss_dssp GGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHH
T ss_pred HHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHH
Confidence 87653 46799999999999999999987542 246788899999999999999999999999766 3 344444544
Q ss_pred hccccccccCCCcchhhccccCChHHhHHHHh-----------hhccCCCCcccChHHHHHHHHHh--ccccccC-CchH
Q 036323 410 EMWQLEEFEGGLSAPLFLSYNDLPFEIKRCFS-----------YCAIFPKSSYLKKDELVKLWMAQ--GYIVLKG-NNEM 475 (583)
Q Consensus 410 ~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~-----------~lsifp~~~~i~~~~Li~~W~ae--g~i~~~~-~~~~ 475 (583)
..+.. ....+..++.+||++||+++|.||+ |||+||+++.|+ +++|+|+ ||+.... +.++
T Consensus 354 ~l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~ 427 (549)
T 2a5y_B 354 KLESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLD 427 (549)
T ss_dssp HHHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCT
T ss_pred Hhhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCH
Confidence 43322 3467999999999999999999999 999999999999 8999999 9998765 6677
Q ss_pred HHHHHHHHHHHhhcccccceecCCCCcEEEEEEchhHHHHHHHhhccceE
Q 036323 476 KVIGLEYFDCLASRSFYQQFVKDDDNMVIGCTMHDVVHDFAQSLTNNECV 525 (583)
Q Consensus 476 e~~~~~~l~~L~~rsll~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~e~~ 525 (583)
+++++ ||++|+++|||++...+ ...+|+|||+||+||++++.++++
T Consensus 428 ~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 428 DEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 88888 99999999999986543 334799999999999999988775
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=8.6e-41 Score=369.29 Aligned_cols=286 Identities=17% Similarity=0.154 Sum_probs=227.3
Q ss_pred ceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCce-EEEEEeCCCCChHHHHHHH
Q 036323 181 EVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEI-RVRVCVSDPFDEFNVAKAT 259 (583)
Q Consensus 181 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 259 (583)
..|||+.++++|.++|.... ..++|+|+||||+||||||+++|++.++..+|+. ++|+++++..+...++..+
T Consensus 129 ~~VGRe~eLeeL~elL~~~d------~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~L 202 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELR------PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCC------SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccC------CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHH
Confidence 34999999999999997532 3789999999999999999999987778899986 9999999998888888887
Q ss_pred HHHhhcCc------c-----ccccHHHHHHHHHHHh---cCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecC
Q 036323 260 IEELEGSA------I-----DLHELNSLLRRIGANI---AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTR 325 (583)
Q Consensus 260 l~~l~~~~------~-----~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR 325 (583)
+..+.... . ...+.+.+...+++.| .++|+||||||+|+. ..|+.+ + +||+||||||
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTR 273 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTR 273 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEecc
Confidence 77543211 0 1234456667777766 689999999999873 355543 2 6899999999
Q ss_pred chHHHhhhcCCCeEEcC------CCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhhhhccCC-
Q 036323 326 KETVARMMESTDIVYVQ------GLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSLLQFKR- 398 (583)
Q Consensus 326 ~~~v~~~~~~~~~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~- 398 (583)
++.++..+.....+.++ +|+.+|||+||.+.. +.. . .++..+| |+|+||||+++|+.|+.+.
T Consensus 274 d~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~~ 342 (1221)
T 1vt4_I 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPREV---LTTNPRRLSIIAESIRDGLA 342 (1221)
T ss_dssp CSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSCS
T ss_pred ChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCCC
Confidence 99988654443456666 999999999999984 221 1 2233333 9999999999999999885
Q ss_pred CHHHHHHHHhhhccccccccCCCcchhhccccCChHHh-HHHHhhhccCCCCcccChHHHHHHHHHhccccccCCchHHH
Q 036323 399 TKEEWQSALDSEMWQLEEFEGGLSAPLFLSYNDLPFEI-KRCFSYCAIFPKSSYLKKDELVKLWMAQGYIVLKGNNEMKV 477 (583)
Q Consensus 399 ~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cf~~lsifp~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~ 477 (583)
+.++|... ....+..+|.+||+.||+++ |.||++||+||+++.|+.+.++.+|+++| ++
T Consensus 343 s~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------ee 402 (1221)
T 1vt4_I 343 TWDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KS 402 (1221)
T ss_dssp SHHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SH
T ss_pred CHHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HH
Confidence 67888653 12457889999999999999 99999999999999999999999998887 13
Q ss_pred HHHHHHHHHhhcccccceecCCCCcEEEEEEchhHHHHHH
Q 036323 478 IGLEYFDCLASRSFYQQFVKDDDNMVIGCTMHDVVHDFAQ 517 (583)
Q Consensus 478 ~~~~~l~~L~~rsll~~~~~~~~~~~~~~~mHdlv~~~a~ 517 (583)
.++.+|++|+++|||+... ...+|+|||++++++.
T Consensus 403 dAe~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 403 DVMVVVNKLHKYSLVEKQP-----KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHhc
Confidence 5788999999999999731 1237999999999653
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-39 Score=389.19 Aligned_cols=315 Identities=18% Similarity=0.217 Sum_probs=248.3
Q ss_pred ccccCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccc-cccC-ceEEEEEeCCCCC-
Q 036323 175 SLIDVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDV-INNF-EIRVRVCVSDPFD- 251 (583)
Q Consensus 175 ~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~- 251 (583)
.+.+++.||||++++++|.++|.... ...++|+|+||||+||||||+++|++.+. ..+| +.++|+++++..+
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~-----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 193 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLN-----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS 193 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTT-----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhcc-----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCch
Confidence 34456789999999999999997543 56899999999999999999999997543 4445 6788999988543
Q ss_pred -hHHHHHHHHHHhhcCc----cccccHHHHHHHHHHHhcCC--ceeEEEcCCCcccccchHhhHHhhccCCCCceEEEec
Q 036323 252 -EFNVAKATIEELEGSA----IDLHELNSLLRRIGANIAGQ--KFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITT 324 (583)
Q Consensus 252 -~~~~~~~il~~l~~~~----~~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTt 324 (583)
....+..++..+.... ....+.+.+...++..+.++ |+||||||+|+.. .|.. ..+|++|||||
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~--~~~~-------~~~~~~ilvTt 264 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW--VLKA-------FDNQCQILLTT 264 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH--HHTT-------TCSSCEEEEEE
T ss_pred HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH--HHHh-------hcCCCEEEEEc
Confidence 3344666777766542 22456788889999999877 9999999998642 3333 36799999999
Q ss_pred CchHHHhh-hcCCCeEEcCC-CChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhhhhccCCCHHH
Q 036323 325 RKETVARM-MESTDIVYVQG-LSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSLLQFKRTKEE 402 (583)
Q Consensus 325 R~~~v~~~-~~~~~~~~l~~-L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~ 402 (583)
|++.++.. +.....+++.+ |+.++|++||...++.. .+.+.+++++|+++|+|+||||+++|++|+.++ ..
T Consensus 265 R~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~ 337 (1249)
T 3sfz_A 265 RDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NR 337 (1249)
T ss_dssp SSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SC
T ss_pred CCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hH
Confidence 99998854 45567899996 99999999999988432 233456789999999999999999999998775 34
Q ss_pred HHHHHhhhcccc----cc----ccCCCcchhhccccCChHHhHHHHhhhccCCCCcccChHHHHHHHHHhccccccCCch
Q 036323 403 WQSALDSEMWQL----EE----FEGGLSAPLFLSYNDLPFEIKRCFSYCAIFPKSSYLKKDELVKLWMAQGYIVLKGNNE 474 (583)
Q Consensus 403 w~~~l~~~~~~~----~~----~~~~i~~~l~~sy~~L~~~~k~cf~~lsifp~~~~i~~~~Li~~W~aeg~i~~~~~~~ 474 (583)
|...+....... .. ....+..+|.+||+.||+++|.||+|||+||+++.|+.+.++.+|.++
T Consensus 338 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~---------- 407 (1249)
T 3sfz_A 338 WAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE---------- 407 (1249)
T ss_dssp HHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC----------
T ss_pred HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC----------
Confidence 666555432111 11 112477899999999999999999999999999999999999999554
Q ss_pred HHHHHHHHHHHHhhcccccceecCCCCcEEEEEEchhHHHHHHHhhccce
Q 036323 475 MKVIGLEYFDCLASRSFYQQFVKDDDNMVIGCTMHDVVHDFAQSLTNNEC 524 (583)
Q Consensus 475 ~e~~~~~~l~~L~~rsll~~~~~~~~~~~~~~~mHdlv~~~a~~~~~~e~ 524 (583)
++.++.+|++|+++||++... ++...+|+||++||+|++..+.++.
T Consensus 408 -~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 408 -TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp -HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGGH
T ss_pred -HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHHH
Confidence 466889999999999998643 3445679999999999999987663
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=2.6e-37 Score=340.64 Aligned_cols=307 Identities=19% Similarity=0.209 Sum_probs=233.0
Q ss_pred cCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccc-cccC-ceEEEEEeCCCCChHHH
Q 036323 178 DVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDV-INNF-EIRVRVCVSDPFDEFNV 255 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f-~~~~wv~~~~~~~~~~~ 255 (583)
.++.||||+.++++|.++|.... +..++|+|+|+||+||||||.+++++..+ ..+| +.++|++++.. +...+
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~~-----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~ 195 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKLK-----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGL 195 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTST-----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHH
T ss_pred CCCeecccHHHHHHHHHHHhccc-----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHH
Confidence 45679999999999999996432 45789999999999999999999997655 7789 58999999765 33334
Q ss_pred HHHH---HHHhhcC----ccccccHHHHHHHHHHHhcC--CceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCc
Q 036323 256 AKAT---IEELEGS----AIDLHELNSLLRRIGANIAG--QKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRK 326 (583)
Q Consensus 256 ~~~i---l~~l~~~----~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~ 326 (583)
+..+ +..+... .....+.+.+...+...+.+ +++||||||+|+.. .+. ...+|++||||||+
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~--~l~-------~l~~~~~ilvTsR~ 266 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW--VLK-------AFDSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH--HHH-------TTCSSCEEEEEESC
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH--HHH-------HhcCCCeEEEECCC
Confidence 4333 3344421 12345567778888888876 78999999998632 222 23568999999999
Q ss_pred hHHHhhhcCCCeEEc---CCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhhhhccCCCHHHH
Q 036323 327 ETVARMMESTDIVYV---QGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSLLQFKRTKEEW 403 (583)
Q Consensus 327 ~~v~~~~~~~~~~~l---~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w 403 (583)
..++..+. ...+++ ++|+.+|+++||...++.. .+...+.+.+|+++|+|+||||..+|+.++.++ ..|
T Consensus 267 ~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w 338 (591)
T 1z6t_A 267 KSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRW 338 (591)
T ss_dssp GGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCH
T ss_pred cHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhH
Confidence 98876543 344554 5899999999999988532 122345688999999999999999999998764 357
Q ss_pred HHHHhhhcccc----c----cccCCCcchhhccccCChHHhHHHHhhhccCCCCcccChHHHHHHHHHhccccccCCchH
Q 036323 404 QSALDSEMWQL----E----EFEGGLSAPLFLSYNDLPFEIKRCFSYCAIFPKSSYLKKDELVKLWMAQGYIVLKGNNEM 475 (583)
Q Consensus 404 ~~~l~~~~~~~----~----~~~~~i~~~l~~sy~~L~~~~k~cf~~lsifp~~~~i~~~~Li~~W~aeg~i~~~~~~~~ 475 (583)
...+....... . .....+..++..||+.||++.|.||++||+||+++.|+.+.+..+|.++
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~----------- 407 (591)
T 1z6t_A 339 EYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME----------- 407 (591)
T ss_dssp HHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------
T ss_pred HHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------
Confidence 76665432211 0 0112467789999999999999999999999999999999999999543
Q ss_pred HHHHHHHHHHHhhcccccceecCCCCcEEEEEEchhHHHHHHHhhc
Q 036323 476 KVIGLEYFDCLASRSFYQQFVKDDDNMVIGCTMHDVVHDFAQSLTN 521 (583)
Q Consensus 476 e~~~~~~l~~L~~rsll~~~~~~~~~~~~~~~mHdlv~~~a~~~~~ 521 (583)
.+.+..++++|+++|||+.... +...+|+||+++|+|++....
T Consensus 408 ~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 408 TEEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHHhhhh
Confidence 2356889999999999985432 345579999999999988743
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.76 E-value=2.6e-17 Score=168.37 Aligned_cols=294 Identities=12% Similarity=0.077 Sum_probs=179.9
Q ss_pred ccccCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCC----
Q 036323 175 SLIDVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPF---- 250 (583)
Q Consensus 175 ~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~---- 250 (583)
+...+..|+||+.++++|.+++... +++.|+|++|+|||||++++++.. . .+|+++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~~---------~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLENY---------PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERG 70 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHHC---------SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhcC---------CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeeccccccc
Confidence 3345678999999999999998531 589999999999999999998742 1 6777765332
Q ss_pred --ChHHHHHHHHHHhhc-----------------C-ccccccHHHHHHHHHHHhcC-CceeEEEcCCCcccc-------c
Q 036323 251 --DEFNVAKATIEELEG-----------------S-AIDLHELNSLLRRIGANIAG-QKFFMVLDNLWTDDY-------R 302 (583)
Q Consensus 251 --~~~~~~~~il~~l~~-----------------~-~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~-------~ 302 (583)
+...++..+...+.. . .....+...+...+.+.... ++++|||||+++.+. .
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~ 150 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKE 150 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHH
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhh
Confidence 455556666555432 0 00123456666666665543 389999999976432 1
Q ss_pred chHhhHHhhccCCCCceEEEecCchHHHhhh-----------cC-CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHH
Q 036323 303 KWEPFRNCLMNGLRGSKILITTRKETVARMM-----------ES-TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLE 370 (583)
Q Consensus 303 ~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~~-----------~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~ 370 (583)
.+..+...+.. .++..+|+|++.......+ +. ...+++.||+.+|+.+++........... ..
T Consensus 151 ~~~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~----~~ 225 (350)
T 2qen_A 151 LLALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV----PE 225 (350)
T ss_dssp HHHHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC----CH
T ss_pred HHHHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC----CH
Confidence 22223332222 2577899998875432111 11 24789999999999999987542211111 14
Q ss_pred HHHHHHhhhCCCCccchhhhhhhhccCCCHHHHHH-HHhhhccccccccCCCcchhhccccCC---hHHhHHHHhhhccC
Q 036323 371 GIGRGIVRKCKGLPLAAKTIGSLLQFKRTKEEWQS-ALDSEMWQLEEFEGGLSAPLFLSYNDL---PFEIKRCFSYCAIF 446 (583)
Q Consensus 371 ~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~-~l~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~cf~~lsif 446 (583)
+.+..|++.|+|+|+++..++..+....+...+.. ..+.. ...+.-.+..+ ++..+..+..++.
T Consensus 226 ~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~l~~~~~~~~~~l~~la~- 293 (350)
T 2qen_A 226 NEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVA-----------KGLIMGELEELRRRSPRYVDILRAIAL- 293 (350)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-----------HHHHHHHHHHHHHHCHHHHHHHHHHHT-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHH-----------HHHHHHHHHHHHhCChhHHHHHHHHHh-
Confidence 56788999999999999998876432222322221 11110 00011111222 6788999999988
Q ss_pred CCCcccChHHHHHHHHHhccccccCCchHHHHHHHHHHHHhhcccccceecCCCCcEEEEE-EchhHHHHHH
Q 036323 447 PKSSYLKKDELVKLWMAQGYIVLKGNNEMKVIGLEYFDCLASRSFYQQFVKDDDNMVIGCT-MHDVVHDFAQ 517 (583)
Q Consensus 447 p~~~~i~~~~Li~~W~aeg~i~~~~~~~~e~~~~~~l~~L~~rsll~~~~~~~~~~~~~~~-mHdlv~~~a~ 517 (583)
.. ++...+.....+. . ++. .......+++.|++.+||.... + .|. -|++++++.+
T Consensus 294 -g~--~~~~~l~~~~~~~-~----~~~-~~~~~~~~l~~L~~~gli~~~~----~---~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 294 -GY--NRWSLIRDYLAVK-G----TKI-PEPRLYALLENLKKMNWIVEED----N---TYKIADPVVATVLR 349 (350)
T ss_dssp -TC--CSHHHHHHHHHHT-T----CCC-CHHHHHHHHHHHHHTTSEEEET----T---EEEESSHHHHHHHT
T ss_pred -CC--CCHHHHHHHHHHH-h----CCC-CHHHHHHHHHHHHhCCCEEecC----C---EEEEecHHHHHHHc
Confidence 22 3444554433221 0 011 1234678999999999997541 2 344 5889888764
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.76 E-value=2.1e-17 Score=173.19 Aligned_cols=320 Identities=11% Similarity=0.002 Sum_probs=187.3
Q ss_pred cCCceeechhHHHHHHHHh-hcCCCCCCCCceEEEEE--EecCCchHHHHHHHHHcCcccc---ccCc-eEEEEEeCCCC
Q 036323 178 DVSEVRGRDEEMRSIKSML-LCQGSDQQTNTVQIISM--VGMGGIGKTTLAQLAYNDNDVI---NNFE-IRVRVCVSDPF 250 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L-~~~~~~~~~~~~~vv~I--~G~gGiGKTtLa~~v~~~~~~~---~~f~-~~~wv~~~~~~ 250 (583)
.+..|+||+.++++|.+.| .... .+.....+.+.| +|++|+|||||++.+++..... ..+. .++|+++....
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~-~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLL-SGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHH-TSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC
T ss_pred CCCCCCChHHHHHHHHHHHhHHHh-cCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCC
Confidence 3478999999999999988 4321 000013456666 9999999999999998742211 0122 35788876777
Q ss_pred ChHHHHHHHHHHhhcCccc-cccHHHHHHHHHHHhc--CCceeEEEcCCCcccc------cchHhhHHhhccC---C--C
Q 036323 251 DEFNVAKATIEELEGSAID-LHELNSLLRRIGANIA--GQKFFMVLDNLWTDDY------RKWEPFRNCLMNG---L--R 316 (583)
Q Consensus 251 ~~~~~~~~il~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~------~~~~~l~~~l~~~---~--~ 316 (583)
+...++..++..++...+. ..+...+...+.+.+. +++++|||||+|+-.. ..+..+...+... . .
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 178 (412)
T 1w5s_A 99 NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVN 178 (412)
T ss_dssp SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCC
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCc
Confidence 8888999999988754321 2234455666666664 6799999999976432 2333333333222 2 3
Q ss_pred CceEEEecCchHHHhhh--------cC-CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCC------
Q 036323 317 GSKILITTRKETVARMM--------ES-TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCK------ 381 (583)
Q Consensus 317 gs~IlvTtR~~~v~~~~--------~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~------ 381 (583)
+..+|+||+...+...+ .. ...+.+.+|+.++++++|...+....... ....+....|++.|+
T Consensus 179 ~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~ 256 (412)
T 1w5s_A 179 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWEPRHLELISDVYGEDKGGD 256 (412)
T ss_dssp BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCCHHHHHHHHHHHCGGGTSC
T ss_pred eEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHhccCC
Confidence 44578788765533211 11 22399999999999999976542111101 111456778899999
Q ss_pred CCccchhhhhhhhc------cC--CCHHHHHHHHhhhccccccccCCCcchhhccccCChHHhHHHHhhhccCC--CCcc
Q 036323 382 GLPLAAKTIGSLLQ------FK--RTKEEWQSALDSEMWQLEEFEGGLSAPLFLSYNDLPFEIKRCFSYCAIFP--KSSY 451 (583)
Q Consensus 382 GlPLai~~~~~~L~------~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~lsifp--~~~~ 451 (583)
|+|..+..+..... .. -+.+.+...+.... . ...+.-++..||++.+.++..++.+. .+..
T Consensus 257 G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~-------~--~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~ 327 (412)
T 1w5s_A 257 GSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE-------A--ASIQTHELEALSIHELIILRLIAEATLGGMEW 327 (412)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCSS
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-------c--cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCC
Confidence 99976655543211 11 13444444433211 0 23455678889999999999888654 2334
Q ss_pred cChHHHHHHHHHh--ccccccCCchHHHHHHHHHHHHhhcccccceecCCCCcEEEEEEchhH
Q 036323 452 LKKDELVKLWMAQ--GYIVLKGNNEMKVIGLEYFDCLASRSFYQQFVKDDDNMVIGCTMHDVV 512 (583)
Q Consensus 452 i~~~~Li~~W~ae--g~i~~~~~~~~e~~~~~~l~~L~~rsll~~~~~~~~~~~~~~~mHdlv 512 (583)
++...+...+... .... .. .........+++.|+..+||.....+ .+....|++|.+.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~~L~~~gli~~~~~~-~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 328 INAGLLRQRYEDASLTMYN-VK-PRGYTQYHIYLKHLTSLGLVDAKPSG-RGMRGRTTLFRLA 387 (412)
T ss_dssp BCHHHHHHHHHHHHHHHSC-CC-CCCHHHHHHHHHHHHHTTSEEEECC--------CCEEEEC
T ss_pred ccHHHHHHHHHHHHHhhcC-CC-CCCHHHHHHHHHHHHhCCCEEeeccc-CCCCCceeEEEeC
Confidence 5555555544211 0110 01 11123456789999999999865432 1222235555444
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.73 E-value=1.3e-16 Score=163.57 Aligned_cols=292 Identities=12% Similarity=0.061 Sum_probs=175.4
Q ss_pred ccCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCC-----CC
Q 036323 177 IDVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDP-----FD 251 (583)
Q Consensus 177 ~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-----~~ 251 (583)
..+..|+||+++++.|.+ +. . +++.|+|++|+|||+|++.+++.. .. ..+|+++... .+
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~-------~---~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~ 73 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LR-------A---PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYIS 73 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TC-------S---SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCC
T ss_pred CCHHHhcChHHHHHHHHH-hc-------C---CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCC
Confidence 356789999999999999 72 1 589999999999999999998742 21 2578887642 34
Q ss_pred hHHHHHHHHHHhhc-------------C-------c--c-------ccccHHHHHHHHHHHhcCCceeEEEcCCCcccc-
Q 036323 252 EFNVAKATIEELEG-------------S-------A--I-------DLHELNSLLRRIGANIAGQKFFMVLDNLWTDDY- 301 (583)
Q Consensus 252 ~~~~~~~il~~l~~-------------~-------~--~-------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~- 301 (583)
....+..+...+.. . . . .......+...+.+... ++++|||||+++.+.
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 74 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKL 152 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGC
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhcc
Confidence 44455444443321 0 0 0 01234555555554433 499999999976432
Q ss_pred --cchHhhHHhhccCCCCceEEEecCchHHHhh----------hc-C-CCeEEcCCCChHHHHHHHHHHhccCCCCCCCc
Q 036323 302 --RKWEPFRNCLMNGLRGSKILITTRKETVARM----------ME-S-TDIVYVQGLSELECWSLFRRFALSGRTPSECD 367 (583)
Q Consensus 302 --~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~----------~~-~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~ 367 (583)
..+..+...+....++..+|+|++....... +. . ...+++.+|+.+|+.+++........... +
T Consensus 153 ~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~--~ 230 (357)
T 2fna_A 153 RGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF--K 230 (357)
T ss_dssp TTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC--C
T ss_pred CchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCC--C
Confidence 2333333333222346789999987653221 11 1 25789999999999999987542111111 1
Q ss_pred hHHHHHHHHhhhCCCCccchhhhhhhhccCCCHHHHHHH-HhhhccccccccCCCcchhh-ccc--cCChHHhHHHHhhh
Q 036323 368 QLEGIGRGIVRKCKGLPLAAKTIGSLLQFKRTKEEWQSA-LDSEMWQLEEFEGGLSAPLF-LSY--NDLPFEIKRCFSYC 443 (583)
Q Consensus 368 ~~~~~~~~I~~~c~GlPLai~~~~~~L~~~~~~~~w~~~-l~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~k~cf~~l 443 (583)
. ...|++.|+|+|+++..++..+....+...|... .+.... .+...+. +.+ ..||+..+..+..+
T Consensus 231 ~----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~l~~~~~~~l~~l 299 (357)
T 2fna_A 231 D----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK-------LILKEFENFLHGREIARKRYLNIMRTL 299 (357)
T ss_dssp C----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-------HHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred c----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH-------HHHHHHHHHhhccccccHHHHHHHHHH
Confidence 1 1679999999999999998876443344444321 111000 0011111 111 16889999999999
Q ss_pred ccCCCCcccChHHHHHHHH-HhccccccCCchHHHHHHHHHHHHhhcccccceecCCCCcEEEEE-EchhHHHHH
Q 036323 444 AIFPKSSYLKKDELVKLWM-AQGYIVLKGNNEMKVIGLEYFDCLASRSFYQQFVKDDDNMVIGCT-MHDVVHDFA 516 (583)
Q Consensus 444 sifp~~~~i~~~~Li~~W~-aeg~i~~~~~~~~e~~~~~~l~~L~~rsll~~~~~~~~~~~~~~~-mHdlv~~~a 516 (583)
|+ +. +...+....- ..|. .........+++.|++.+||.... + .|. -|++++++.
T Consensus 300 a~---g~--~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~l 356 (357)
T 2fna_A 300 SK---CG--KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLAF 356 (357)
T ss_dssp TT---CB--CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHHT
T ss_pred Hc---CC--CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHhh
Confidence 98 21 3444433210 1121 011234568899999999997542 1 244 588998864
No 8
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.67 E-value=6.7e-17 Score=135.99 Aligned_cols=79 Identities=24% Similarity=0.457 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhhc--ccCchHHHHHHHHHHHhhhchHhHHHHHHHHH
Q 036323 10 LEQLISVAAKEANEGVRLAVGVGQEVEKLKRNFQAIQAVLHDAEHR--QVREEGVRLWLDQLKDASYNMEDVLDEWITAR 87 (583)
Q Consensus 10 ~~~l~~~l~~~~~~e~~~~~~v~~~i~~L~~~l~~i~~~l~~ae~~--~~~~~~~~~Wl~~lr~~ayd~eD~lD~~~~~~ 87 (583)
++.++++|++.+.+|+.++.||++++++|+++|++|+++|.+|+.+ +..++.++.|++|||+++||+|||||+|.++.
T Consensus 3 v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~~ 82 (115)
T 3qfl_A 3 ISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQV 82 (115)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666688999999999999999999999999999999997 56789999999999999999999999999876
Q ss_pred H
Q 036323 88 L 88 (583)
Q Consensus 88 ~ 88 (583)
.
T Consensus 83 ~ 83 (115)
T 3qfl_A 83 D 83 (115)
T ss_dssp H
T ss_pred c
Confidence 3
No 9
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.58 E-value=1e-13 Score=143.61 Aligned_cols=297 Identities=12% Similarity=0.014 Sum_probs=181.3
Q ss_pred cCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcccc----ccCceEEEEEeCCCCChH
Q 036323 178 DVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVI----NNFEIRVRVCVSDPFDEF 253 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~ 253 (583)
.+..|+||+.+++++..++...- .....+.+.|+|++|+|||+||+.+++..... +.-...+|+++....+..
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~---~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 93 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPAL---RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPY 93 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGT---SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH---cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHH
Confidence 34789999999999999885431 12345688999999999999999998742111 002346788888878888
Q ss_pred HHHHHHHHHhhcCccc-cccHHHHHHHHHHHh--cCCceeEEEcCCCccccc--chHhhHHhhcc--C---CCCceEEEe
Q 036323 254 NVAKATIEELEGSAID-LHELNSLLRRIGANI--AGQKFFMVLDNLWTDDYR--KWEPFRNCLMN--G---LRGSKILIT 323 (583)
Q Consensus 254 ~~~~~il~~l~~~~~~-~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~--~~~~l~~~l~~--~---~~gs~IlvT 323 (583)
.++..++..++...+. ......+...+.+.+ .+++.+||||+++.-... ..+.+...+.. . ..+..+|+|
T Consensus 94 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEE
Confidence 8999999988654322 223455566666666 356889999999764322 22233332321 1 345677777
Q ss_pred cCchHHH----hhh-cC--CCeEEcCCCChHHHHHHHHHHhcc--CCCCCCCchHHHHHHHHhhhCC---CCccch-hhh
Q 036323 324 TRKETVA----RMM-ES--TDIVYVQGLSELECWSLFRRFALS--GRTPSECDQLEGIGRGIVRKCK---GLPLAA-KTI 390 (583)
Q Consensus 324 tR~~~v~----~~~-~~--~~~~~l~~L~~~ea~~Lf~~~a~~--~~~~~~~~~~~~~~~~I~~~c~---GlPLai-~~~ 390 (583)
|+..... ..+ .. ...+.+++++.++..+++...+.. ...... .+..+.|++.++ |.|..+ ..+
T Consensus 174 t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD----PDVVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC----SSHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC----HHHHHHHHHHHHHhccCHHHHHHHH
Confidence 7765221 111 11 247899999999999999987532 111111 234566777777 999433 332
Q ss_pred hhhhc-----c--CCCHHHHHHHHhhhccccccccCCCcchhhccccCChHHhHHHHhhhc-cCCCCcccChHHHHHHHH
Q 036323 391 GSLLQ-----F--KRTKEEWQSALDSEMWQLEEFEGGLSAPLFLSYNDLPFEIKRCFSYCA-IFPKSSYLKKDELVKLWM 462 (583)
Q Consensus 391 ~~~L~-----~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~ls-ifp~~~~i~~~~Li~~W~ 462 (583)
..... . .-+.+.+..++..... ..+.-++..||++.+..+..+. ++.....+....+.+...
T Consensus 250 ~~a~~~a~~~~~~~i~~~~v~~a~~~~~~----------~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 250 RVAGEIAERRREERVRREHVYSARAEIER----------DRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHHHHHH----------HHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHHhh----------chHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 22211 1 1256777766654321 1355567889988887776665 443223455554444432
Q ss_pred H----hccccccCCchHHHHHHHHHHHHhhccccccee
Q 036323 463 A----QGYIVLKGNNEMKVIGLEYFDCLASRSFYQQFV 496 (583)
Q Consensus 463 a----eg~i~~~~~~~~e~~~~~~l~~L~~rsll~~~~ 496 (583)
. .| + .......+..+++.|...|++....
T Consensus 320 ~~~~~~~-~----~~~~~~~~~~~l~~L~~~gli~~~~ 352 (387)
T 2v1u_A 320 ELTSTLG-L----EHVTLRRVSGIISELDMLGIVKSRV 352 (387)
T ss_dssp HHHHHTT-C----CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHhcC-C----CCCCHHHHHHHHHHHHhCCCeEEEe
Confidence 2 12 1 1112345678999999999998754
No 10
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.57 E-value=1.6e-13 Score=142.30 Aligned_cols=299 Identities=11% Similarity=0.033 Sum_probs=185.8
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcccccc-CceEEEEEeCCCCChHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINN-FEIRVRVCVSDPFDEFNVAK 257 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-f~~~~wv~~~~~~~~~~~~~ 257 (583)
+..++||+.++++|..++.... .+..+..+.+.|+|++|+|||||++.+++. .... -...+|++++...+...++.
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~-~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWL-RNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHH-HSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHH-cCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHH
Confidence 4779999999999999886521 001123348999999999999999999874 2222 13467788777777888889
Q ss_pred HHHHHhhcCccc-cccHHHHHHHHHHHhc--CCceeEEEcCCCcccccchHhhHHhhccCC----CCceEEEecCchHHH
Q 036323 258 ATIEELEGSAID-LHELNSLLRRIGANIA--GQKFFMVLDNLWTDDYRKWEPFRNCLMNGL----RGSKILITTRKETVA 330 (583)
Q Consensus 258 ~il~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~IlvTtR~~~v~ 330 (583)
.++..++...+. ......+...+...+. +++.+||||+++..+......+...+.... .+..+|++|+.....
T Consensus 93 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 93 EIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 988888654321 2234455555555553 568899999997654445555555443211 466788887765433
Q ss_pred hhhc-------CCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhC---------CCCccchhhhhhhh
Q 036323 331 RMME-------STDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKC---------KGLPLAAKTIGSLL 394 (583)
Q Consensus 331 ~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c---------~GlPLai~~~~~~L 394 (583)
..+. ....+.+.+++.++..+++...+....... .-..+....|++.+ +|.|..+..+....
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a 250 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEG--SYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRS 250 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTT--SSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHH
Confidence 2221 124799999999999999988753211001 11245667788888 78876554443322
Q ss_pred c------cC--CCHHHHHHHHhhhccccccccCCCcchhhccccCChHHhHHHHhhhccCC---CCcccChHHHHHHHHH
Q 036323 395 Q------FK--RTKEEWQSALDSEMWQLEEFEGGLSAPLFLSYNDLPFEIKRCFSYCAIFP---KSSYLKKDELVKLWMA 463 (583)
Q Consensus 395 ~------~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~lsifp---~~~~i~~~~Li~~W~a 463 (583)
. .. -+.+....++.... ...+.-.+..||.+.+.++..++.+. .+..+....+...+..
T Consensus 251 ~~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~ 320 (389)
T 1fnn_A 251 AYAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKI 320 (389)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHH
T ss_pred HHHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHH
Confidence 1 11 13444444433221 12234456778888888888777654 2224566666655533
Q ss_pred ----hccccccCCchHHHHHHHHHHHHhhcccccceec
Q 036323 464 ----QGYIVLKGNNEMKVIGLEYFDCLASRSFYQQFVK 497 (583)
Q Consensus 464 ----eg~i~~~~~~~~e~~~~~~l~~L~~rsll~~~~~ 497 (583)
.|.. .. .......++++|..+|+|.....
T Consensus 321 ~~~~~~~~----~~-~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 321 VCEEYGER----PR-VHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHHTTCC----CC-CHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHcCCC----CC-CHHHHHHHHHHHHhCCCeEEeee
Confidence 1211 11 12346688999999999987654
No 11
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.56 E-value=2.3e-13 Score=141.00 Aligned_cols=297 Identities=13% Similarity=0.033 Sum_probs=181.4
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcccc----cc--CceEEEEEeCCCC-C
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVI----NN--FEIRVRVCVSDPF-D 251 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~--f~~~~wv~~~~~~-~ 251 (583)
+..|+||+.+++++..++.... .....+.+.|+|++|+|||+||+.+++..... .. ....+|+++.... +
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~---~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 95 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFV---KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGT 95 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHH---TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSC
T ss_pred CCCCCChHHHHHHHHHHHHHHH---cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCC
Confidence 4789999999999998885421 12345689999999999999999998742111 01 3356788877666 7
Q ss_pred hHHHHHHHHHHhhcCcc--ccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhh-HHhhccCCCCceEEEecCchH
Q 036323 252 EFNVAKATIEELEGSAI--DLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPF-RNCLMNGLRGSKILITTRKET 328 (583)
Q Consensus 252 ~~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l-~~~l~~~~~gs~IlvTtR~~~ 328 (583)
...++..++..+.+... .......+...+.+.+..++.+|||||++......+..+ ...+.....+..+|+||+...
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~ 175 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTT
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCc
Confidence 78888888888843322 122335566777777777666999999965433222222 333333226778888888653
Q ss_pred H----Hhhh-cC-CCeEEcCCCChHHHHHHHHHHhccC-CCCCCCchHHHHHHHHhhhCC---CCcc-chhhhhhhh--c
Q 036323 329 V----ARMM-ES-TDIVYVQGLSELECWSLFRRFALSG-RTPSECDQLEGIGRGIVRKCK---GLPL-AAKTIGSLL--Q 395 (583)
Q Consensus 329 v----~~~~-~~-~~~~~l~~L~~~ea~~Lf~~~a~~~-~~~~~~~~~~~~~~~I~~~c~---GlPL-ai~~~~~~L--~ 395 (583)
. ...+ .. ...+++++++.++..++|...+... ...... .+..+.|++.|+ |.|. ++..+-... .
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 2 1111 11 2489999999999999999875321 111111 334566777777 8887 433332222 1
Q ss_pred ---cCCCHHHHHHHHhhhccccccccCCCcchhhccccCChHHhHHHHhhhccCCCCcccChHHHHHHHHHhccccccCC
Q 036323 396 ---FKRTKEEWQSALDSEMWQLEEFEGGLSAPLFLSYNDLPFEIKRCFSYCAIFPKSSYLKKDELVKLWMAQGYIVLKGN 472 (583)
Q Consensus 396 ---~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~lsifp~~~~i~~~~Li~~W~aeg~i~~~~~ 472 (583)
..-+.+.+..++..... ..+..++..|+++.+..+..++....+-.+. +.....--..| +.
T Consensus 253 ~~~~~i~~~~v~~~~~~~~~----------~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~---- 316 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYEQ----------ERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK---- 316 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHHH----------HHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC----
T ss_pred cCCCccCHHHHHHHHHHHhc----------chHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC----
Confidence 12367777777665321 2356677889988888777777611101111 11111111112 11
Q ss_pred chHHHHHHHHHHHHhhcccccceec
Q 036323 473 NEMKVIGLEYFDCLASRSFYQQFVK 497 (583)
Q Consensus 473 ~~~e~~~~~~l~~L~~rsll~~~~~ 497 (583)
.........+++.|..+|++.....
T Consensus 317 ~~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 317 PLSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCEEEEec
Confidence 1123456788999999999987654
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.49 E-value=3.8e-13 Score=139.21 Aligned_cols=297 Identities=13% Similarity=0.073 Sum_probs=174.5
Q ss_pred cCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcccccc---CceEEEEEeCCCCChHH
Q 036323 178 DVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINN---FEIRVRVCVSDPFDEFN 254 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---f~~~~wv~~~~~~~~~~ 254 (583)
.+..|+||+.+++.|.+++.... .....+.+.|+|++|+|||||++.+++. .... -...+|+++....+...
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~---~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~ 92 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLY---REEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYR 92 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGG---GTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHH---cCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHH
Confidence 45789999999999999886421 1234568899999999999999999874 3222 23467777766566677
Q ss_pred HHHHHHHHhhcCcc-ccccHHHHHHHHHHHhc--CCceeEEEcCCCccc----ccchHhhHHhhcc-CCCCceEEEecCc
Q 036323 255 VAKATIEELEGSAI-DLHELNSLLRRIGANIA--GQKFFMVLDNLWTDD----YRKWEPFRNCLMN-GLRGSKILITTRK 326 (583)
Q Consensus 255 ~~~~il~~l~~~~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~IlvTtR~ 326 (583)
++..++..++.... ...+...+...+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+.
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 77777776654322 12234455555555554 458999999996532 2223334333322 2335567777776
Q ss_pred hHHHhhhc-----C--CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCC---CCccchhhhhhhh-c
Q 036323 327 ETVARMME-----S--TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCK---GLPLAAKTIGSLL-Q 395 (583)
Q Consensus 327 ~~v~~~~~-----~--~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~---GlPLai~~~~~~L-~ 395 (583)
......+. . ...+.+++++.++..+++...+..... ......++...|++.++ |.|..+..+.... .
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGE 250 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 54322111 1 247999999999999999986531110 01112445666777777 9998444332221 1
Q ss_pred -----c--CCCHHHHHHHHhhhccccccccCCCcchhhccccCChHHhHHHHhhhccCCC-C-cccChHHHHHHHH--Hh
Q 036323 396 -----F--KRTKEEWQSALDSEMWQLEEFEGGLSAPLFLSYNDLPFEIKRCFSYCAIFPK-S-SYLKKDELVKLWM--AQ 464 (583)
Q Consensus 396 -----~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~lsifp~-~-~~i~~~~Li~~W~--ae 464 (583)
. .-+.+.+..++..... ..+.-++..||+..+..+..++.+-+ + ..+....+.+... ++
T Consensus 251 ~a~~~~~~~i~~~~v~~a~~~~~~----------~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~ 320 (386)
T 2qby_A 251 IAERMKDTKVKEEYVYMAKEEIER----------DRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICK 320 (386)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHHH----------HHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHH
T ss_pred HHHhcCCCccCHHHHHHHHHHHhh----------chHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHH
Confidence 1 1255666665554321 23555677888888877776663221 1 1233433333221 11
Q ss_pred --ccccccCCchHHHHHHHHHHHHhhccccccee
Q 036323 465 --GYIVLKGNNEMKVIGLEYFDCLASRSFYQQFV 496 (583)
Q Consensus 465 --g~i~~~~~~~~e~~~~~~l~~L~~rsll~~~~ 496 (583)
| +.+ ........+++.|...|++....
T Consensus 321 ~~g-~~~----~~~~~~~~~l~~L~~~gli~~~~ 349 (386)
T 2qby_A 321 KLG-VEA----VTQRRVSDIINELDMVGILTAKV 349 (386)
T ss_dssp HHT-CCC----CCHHHHHHHHHHHHHHTSEEEEE
T ss_pred hcC-CCC----CCHHHHHHHHHHHHhCCCEEEEe
Confidence 2 111 11234567899999999998653
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.42 E-value=1.7e-12 Score=124.94 Aligned_cols=199 Identities=11% Similarity=0.057 Sum_probs=120.6
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
...++||+.+++.|..++.... ..+.+.|+|++|+||||||+.+++.......+.. ...... .....
T Consensus 22 ~~~~~g~~~~~~~l~~~l~~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~-~~~~~ 88 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSLGR------IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVC-DNCRE 88 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHHTC------CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCS-HHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcCC------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCccc-HHHHH
Confidence 3469999999999999996543 2358899999999999999999874221111100 000000 00001
Q ss_pred HHHHhhcC-----ccccccHHHHHHHHHHH----hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchHH
Q 036323 259 TIEELEGS-----AIDLHELNSLLRRIGAN----IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKETV 329 (583)
Q Consensus 259 il~~l~~~-----~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v 329 (583)
+....... .......+.+...+... ..+++.+|||||++..+...++.+...+.....+..+|+||+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 89 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp HHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred HhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 10000000 00011112222222211 2356799999999775556677777777665667888888876432
Q ss_pred -Hhh-hcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhhhh
Q 036323 330 -ARM-MESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSLL 394 (583)
Q Consensus 330 -~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L 394 (583)
... ......+++.+++.++..+++...+....... ..+....|++.|+|+|..+..+...+
T Consensus 169 ~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 169 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH----EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB----CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 111 12246899999999999999998775432211 14557789999999999988776443
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.35 E-value=1.3e-11 Score=116.93 Aligned_cols=186 Identities=14% Similarity=0.052 Sum_probs=116.9
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccC-ceEEEEEeCCCCChHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNF-EIRVRVCVSDPFDEFNVAK 257 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~ 257 (583)
...++||+..++.+.+++.... .+.+.|+|++|+|||+||+.+++... ...+ ...+.++.+.......+..
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 87 (226)
T 2chg_A 16 LDEVVGQDEVIQRLKGYVERKN-------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRH 87 (226)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTC-------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHhCCC-------CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHH
Confidence 3568999999999999996543 23388999999999999999987421 1112 1233344433322222111
Q ss_pred HHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchHH-Hhh-hcC
Q 036323 258 ATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKETV-ARM-MES 335 (583)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v-~~~-~~~ 335 (583)
.+..+.... ....+++.+|||||++.......+.+...+.....++.+|+||+.... ... ...
T Consensus 88 -~~~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r 152 (226)
T 2chg_A 88 -KIKEFARTA--------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (226)
T ss_dssp -HHHHHHTSC--------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred -HHHHHhccc--------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHh
Confidence 111111000 001357889999999765545566676666665667788888876432 111 122
Q ss_pred CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhh
Q 036323 336 TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIG 391 (583)
Q Consensus 336 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 391 (583)
...+++.+++.++..+++...+....... ..+....|++.++|+|..+..+.
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGVKI----TEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CceeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 45899999999999999998764322111 14556778999999999655443
No 15
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.22 E-value=8.2e-11 Score=118.76 Aligned_cols=268 Identities=13% Similarity=0.030 Sum_probs=148.8
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
-..|+|++..++.+..++..... .......+.|+|++|+|||+||+.+++.. .. ..++++.+......
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~--~~~~~~~vll~G~~GtGKT~la~~i~~~~--~~---~~~~~~~~~~~~~~----- 78 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKA--RKEPLEHLLLFGPPGLGKTTLAHVIAHEL--GV---NLRVTSGPAIEKPG----- 78 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHH--HCSCCCCCEEECCTTCCCHHHHHHHHHHH--TC---CEEEECTTTCCSHH-----
T ss_pred HHHhhCHHHHHHHHHHHHHHHHc--cCCCCCcEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEeccccCChH-----
Confidence 45799999999998888753110 01224568899999999999999998732 11 12334333221111
Q ss_pred HHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCC------------------CCceE
Q 036323 259 TIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL------------------RGSKI 320 (583)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~I 320 (583)
.+...+... ..++.+|+||++..........+...+.... ++..+
T Consensus 79 ----------------~l~~~l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 79 ----------------DLAAILANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp ----------------HHHHHHTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred ----------------HHHHHHHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 111111111 1356799999996654434444544443211 23456
Q ss_pred EEecCchH-HHhhh-cC-CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhhhhcc-
Q 036323 321 LITTRKET-VARMM-ES-TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSLLQF- 396 (583)
Q Consensus 321 lvTtR~~~-v~~~~-~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L~~- 396 (583)
|.||.... +...+ .. ...+.+.+++.++...++...+....... ..+....|++.|+|+|..+..+...+..
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRI----TEEAALEIGRRSRGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCC----CHHHHHHHHHHSCSCHHHHHHHHHHHTTT
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 66665432 21111 11 35789999999999999988764332211 2456778999999999887766544321
Q ss_pred -----C--CCHHHHHHHHhhhccccccccCCCcchhhccccCChHHhHHHHhhhc-cCCCC----------cccChHHHH
Q 036323 397 -----K--RTKEEWQSALDSEMWQLEEFEGGLSAPLFLSYNDLPFEIKRCFSYCA-IFPKS----------SYLKKDELV 458 (583)
Q Consensus 397 -----~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~ls-ifp~~----------~~i~~~~Li 458 (583)
. -+.+....++... ...+..|+...+..+..+. .|..+ ..+++.++.
T Consensus 218 a~~~~~~~i~~~~~~~~~~~~---------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~ 282 (324)
T 1hqc_A 218 AQVAGEEVITRERALEALAAL---------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLE 282 (324)
T ss_dssp STTTSCSCCCHHHHHHHHHHH---------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHh---------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHH
Confidence 1 1344444444321 1223445555555554333 33222 113444443
Q ss_pred H----HHHHhccccc-cCCchHHHHHHHHHH-HHhhcccccc
Q 036323 459 K----LWMAQGYIVL-KGNNEMKVIGLEYFD-CLASRSFYQQ 494 (583)
Q Consensus 459 ~----~W~aeg~i~~-~~~~~~e~~~~~~l~-~L~~rsll~~ 494 (583)
+ +-+..|++.. ..+....+.|.+||+ ++.+|+||||
T Consensus 283 ~~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 283 EVHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HHTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 3 2456788865 445566788888887 8888988885
No 16
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.17 E-value=1.5e-10 Score=116.53 Aligned_cols=186 Identities=13% Similarity=0.132 Sum_probs=116.1
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccC-ceEEEEEeCCCCChHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNF-EIRVRVCVSDPFDEFNVAK 257 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~ 257 (583)
...++|++..++.|.+++.... .+.+.|+|++|+|||++|+.+++... ...+ ...++++.+...... ...
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-~i~ 90 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDGN-------MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGID-VVR 90 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSCC-------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHH-HHH
T ss_pred HHHHHCCHHHHHHHHHHHHcCC-------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChH-HHH
Confidence 3569999999999999986533 22388999999999999999987421 1111 123344433322211 112
Q ss_pred HHHHHhhcCccccccHHHHHHHHHHHh-cCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchH-HHhh-hc
Q 036323 258 ATIEELEGSAIDLHELNSLLRRIGANI-AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKET-VARM-ME 334 (583)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~-v~~~-~~ 334 (583)
.++..+.... ..+ .+++.+|||||++......++.+...+.....++.+|+||+... +... ..
T Consensus 91 ~~~~~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~s 156 (323)
T 1sxj_B 91 NQIKHFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQS 156 (323)
T ss_dssp THHHHHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHh
Confidence 2222111000 011 34688999999976555556667776766556778888876542 2121 12
Q ss_pred CCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccc-hhhhh
Q 036323 335 STDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLA-AKTIG 391 (583)
Q Consensus 335 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLa-i~~~~ 391 (583)
....+++.+++.++..+++...+...+... ..+....|++.|+|.|.. +..+.
T Consensus 157 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 157 QCAILRYSKLSDEDVLKRLLQIIKLEDVKY----TNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hceEEeecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 345899999999999999988764322111 145567899999999954 44443
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.02 E-value=1.2e-09 Score=110.10 Aligned_cols=184 Identities=14% Similarity=0.072 Sum_probs=114.9
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccC-ceEEEEEeCCCCChHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNF-EIRVRVCVSDPFDEFNVAK 257 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~ 257 (583)
-..++|++..++.|..++.... .+.+.|+|++|+|||++|+.+++... ...+ ...+.++.+...... ..
T Consensus 24 ~~~~~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~-~~- 93 (327)
T 1iqp_A 24 LDDIVGQEHIVKRLKHYVKTGS-------MPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGIN-VI- 93 (327)
T ss_dssp TTTCCSCHHHHHHHHHHHHHTC-------CCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHHH-TT-
T ss_pred HHHhhCCHHHHHHHHHHHHcCC-------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCchH-HH-
Confidence 3468999999999999986543 33488999999999999999987421 1111 112333322210000 00
Q ss_pred HHHHHhhcCccccccHHHHHHHHHH---HhcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchHH-Hhhh
Q 036323 258 ATIEELEGSAIDLHELNSLLRRIGA---NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKETV-ARMM 333 (583)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~l~~---~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v-~~~~ 333 (583)
......... ...+++.++|+|+++......++.+...+.....++++|+||..... ...+
T Consensus 94 ----------------~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l 157 (327)
T 1iqp_A 94 ----------------REKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPI 157 (327)
T ss_dssp ----------------HHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred ----------------HHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHH
Confidence 011111111 11256789999999765555666777777665667888888865431 1111
Q ss_pred -cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhh
Q 036323 334 -ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGS 392 (583)
Q Consensus 334 -~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~ 392 (583)
.....+.+.+++.++...++...+...+.. -..+....|++.++|.|..+..+..
T Consensus 158 ~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~----~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 158 QSRCAIFRFRPLRDEDIAKRLRYIAENEGLE----LTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp HHTEEEEECCCCCHHHHHHHHHHHHHTTTCE----ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhhCcEEEecCCCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 123478999999999999998876432211 1245677899999999986654443
No 18
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.95 E-value=7e-09 Score=106.62 Aligned_cols=195 Identities=12% Similarity=0.142 Sum_probs=115.2
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKAT 259 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 259 (583)
..++||+..++.|...+.... ..+.+.|+|++|+||||+|+.+++.......+. ...+........+
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR------IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREI 82 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC------CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHH
Confidence 469999999999999996543 235788999999999999999876422111110 0000000111111
Q ss_pred HHHh-------hcC-ccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchH-H
Q 036323 260 IEEL-------EGS-AIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKET-V 329 (583)
Q Consensus 260 l~~l-------~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~-v 329 (583)
.... ... .........+...+... ..+++.+||+||++.-+...++.+...+.....+..+|++|.... +
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 1000 000 00112222332222111 135678999999976555566777777765555667777765432 2
Q ss_pred Hhh-hcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhh
Q 036323 330 ARM-MESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIG 391 (583)
Q Consensus 330 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 391 (583)
... ......+++.+++.++...++...+...+... ..+....|++.++|.|..+..+.
T Consensus 163 ~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~----~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 163 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH----EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB----CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred cHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHCCCCHHHHHHHH
Confidence 221 22356899999999999999987653222111 14556789999999999876654
No 19
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.87 E-value=1.3e-08 Score=102.13 Aligned_cols=183 Identities=13% Similarity=0.064 Sum_probs=112.1
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccC-ceEEEEEeCCCCChHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNF-EIRVRVCVSDPFDEFNVAK 257 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~ 257 (583)
-.+++|++..++.|.+++.... .+.+.|+|++|+|||++|+.+++... ...+ ...+.++.+......
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~---- 83 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERKN-------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGID---- 83 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTTC-------CCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTT----
T ss_pred HHHHhCCHHHHHHHHHHHhCCC-------CCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChH----
Confidence 3468999999999998885432 33388999999999999999887311 1111 112333433321111
Q ss_pred HHHHHhhcCccccccHHHHHHHHHHH--h-cCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchH-HHhh-
Q 036323 258 ATIEELEGSAIDLHELNSLLRRIGAN--I-AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKET-VARM- 332 (583)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~-v~~~- 332 (583)
............ + .+++.++|+|+++.-.....+.+...+.....++.+|+||.... +...
T Consensus 84 --------------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l 149 (319)
T 2chq_A 84 --------------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPI 149 (319)
T ss_dssp --------------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHH
T ss_pred --------------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHH
Confidence 011111111110 1 25678999999966544455666666655556777887776543 2221
Q ss_pred hcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhh
Q 036323 333 MESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIG 391 (583)
Q Consensus 333 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 391 (583)
......+++.+++.++...++...+...+..- ..+....|++.++|.|..+....
T Consensus 150 ~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i----~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 150 QSRCAVFRFKPVPKEAMKKRLLEICEKEGVKI----TEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp HTTCEEEECCCCCHHHHHHHHHHHHHTTCCCB----CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HhhCeEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 12245899999999999999988764332211 24556778999999988655443
No 20
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.84 E-value=1.6e-08 Score=100.37 Aligned_cols=174 Identities=7% Similarity=-0.063 Sum_probs=105.4
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccc---cC--ceEEEEEeCCCCChHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVIN---NF--EIRVRVCVSDPFDEFN 254 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~f--~~~~wv~~~~~~~~~~ 254 (583)
..+.||++|+++|...|...- ..+....+.|+|++|+|||++++.+++...... .. -..+.+++....+...
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i---~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSL---MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HH
T ss_pred cccCCHHHHHHHHHHHHHHHh---cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHH
Confidence 347899999999998886432 234567889999999999999999988532111 11 1356777777778888
Q ss_pred HHHHHHHHhhcCccccccHHHHHHHHHHHh---cCCceeEEEcCCCcccccchHhhHHhhcc-CCCCc--eEEEecCchH
Q 036323 255 VAKATIEELEGSAIDLHELNSLLRRIGANI---AGQKFFMVLDNLWTDDYRKWEPFRNCLMN-GLRGS--KILITTRKET 328 (583)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs--~IlvTtR~~~ 328 (583)
++..|++++.+...........+..+.+.+ .+++++++||+++.-. .-+.+...+.. ...++ .||.++...+
T Consensus 97 ~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 97 LYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 999999999654322111122222222222 4668999999995533 22333333321 11222 2333343321
Q ss_pred -----HHhhhc-C--CCeEEcCCCChHHHHHHHHHHhc
Q 036323 329 -----VARMME-S--TDIVYVQGLSELECWSLFRRFAL 358 (583)
Q Consensus 329 -----v~~~~~-~--~~~~~l~~L~~~ea~~Lf~~~a~ 358 (583)
+...+. . ...+.+.|++.+|-.+++.+.+.
T Consensus 175 ~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 175 TIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 111111 1 25689999999999999988763
No 21
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.80 E-value=1.8e-07 Score=94.78 Aligned_cols=179 Identities=12% Similarity=0.110 Sum_probs=106.6
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
-..++|++..++.+..++.... ........|.|+|++|+|||+||+.+++. ....| +.++.....
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~--~~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~-------- 92 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAK--KRNECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIE-------- 92 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHH--HTTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCC--------
T ss_pred HHHhCChHHHHHHHHHHHHHHH--hcCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhcc--------
Confidence 4579999999999998886431 00123456889999999999999999873 22222 223322111
Q ss_pred HHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCC------------------CCceE
Q 036323 259 TIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL------------------RGSKI 320 (583)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~I 320 (583)
........+.. ..+..+|+||++..........+...+.... ++..+
T Consensus 93 -------------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 93 -------------KSGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp -------------SHHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred -------------chhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 11111111211 2456799999996654444445555443321 12445
Q ss_pred EEecCchH-HHhhh-cC-CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhh
Q 036323 321 LITTRKET-VARMM-ES-TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIG 391 (583)
Q Consensus 321 lvTtR~~~-v~~~~-~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 391 (583)
|.+|.... +...+ .. ...+++.+++.++...++...+..... ....+....|++.+.|+|-.+..+.
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~----~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK----TCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC----EECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 55555422 21111 11 367999999999999999887643221 1124567778899999996555443
No 22
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.79 E-value=2.6e-08 Score=91.57 Aligned_cols=152 Identities=16% Similarity=0.134 Sum_probs=82.5
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccc---cc--cCceEEEEEeCCCCChH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDV---IN--NFEIRVRVCVSDPFDEF 253 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~--~f~~~~wv~~~~~~~~~ 253 (583)
...++||+++++++.+.+... ..+.+.|+|++|+|||+||+.+++.... .. .....+++++..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~-------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 88 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRR-------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA----- 88 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS-------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH-----
T ss_pred ccccccchHHHHHHHHHHhcC-------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH-----
Confidence 356899999999999998543 2456789999999999999998874211 00 112233333211
Q ss_pred HHHHHHHHHhhcCccccccHHHHHHHHHHHh--cCCceeEEEcCCCccc-------ccc-hHhhHHhhccCCCCceEEEe
Q 036323 254 NVAKATIEELEGSAIDLHELNSLLRRIGANI--AGQKFFMVLDNLWTDD-------YRK-WEPFRNCLMNGLRGSKILIT 323 (583)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~-------~~~-~~~l~~~l~~~~~gs~IlvT 323 (583)
+ ................+.+.+ .+++.+|||||++... ... ...+...+ .. .+..+|+|
T Consensus 89 -~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~-~~-~~~~~i~~ 157 (195)
T 1jbk_A 89 -L--------VAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL-AR-GELHCVGA 157 (195)
T ss_dssp -H--------HTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHH-HT-TSCCEEEE
T ss_pred -H--------hccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh-cc-CCeEEEEe
Confidence 0 000001111111112222211 3567899999996532 112 22333333 22 24556776
Q ss_pred cCchHHHh------h-hcCCCeEEcCCCChHHHHHHH
Q 036323 324 TRKETVAR------M-MESTDIVYVQGLSELECWSLF 353 (583)
Q Consensus 324 tR~~~v~~------~-~~~~~~~~l~~L~~~ea~~Lf 353 (583)
|....... . ......+.+.+++.++..+++
T Consensus 158 ~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 158 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 66544221 1 122336888999888876543
No 23
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.74 E-value=2.2e-08 Score=95.87 Aligned_cols=175 Identities=13% Similarity=0.023 Sum_probs=100.7
Q ss_pred CCceeech---hHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHH
Q 036323 179 VSEVRGRD---EEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNV 255 (583)
Q Consensus 179 ~~~~vGR~---~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 255 (583)
-..|+|++ ..++.+..++... ..+.+.|+|++|+|||+||+.+++. .......+.|+++......
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~--- 94 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGD-------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI--- 94 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTC-------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS---
T ss_pred hhhccCCCCCHHHHHHHHHHHhCC-------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH---
Confidence 34677633 5556666665432 3567889999999999999999874 2222234566665431100
Q ss_pred HHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccc--hHhhHHhhcc-CCCCc-eEEEecCchH---
Q 036323 256 AKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRK--WEPFRNCLMN-GLRGS-KILITTRKET--- 328 (583)
Q Consensus 256 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--~~~l~~~l~~-~~~gs-~IlvTtR~~~--- 328 (583)
+ .. . + +.+ .++.+|||||++...... .+.+...+.. ...+. ++|+||+...
T Consensus 95 -------~----~~------~---~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 95 -------S----TA------L---L-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp -------C----GG------G---G-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred -------H----HH------H---H-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 0 00 0 0 011 456799999996543322 3334443321 11232 3777766321
Q ss_pred ------HHhhhcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhh
Q 036323 329 ------VARMMESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIG 391 (583)
Q Consensus 329 ------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 391 (583)
+...+.....+++.+++.++..+++...+......- ..+....|++.++|.+-.+..+.
T Consensus 153 ~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 153 GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQL----PEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCC----CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHccCCHHHHHHHH
Confidence 111122236899999999999999988764322111 24566788999999887665443
No 24
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.69 E-value=1.3e-07 Score=96.31 Aligned_cols=195 Identities=11% Similarity=0.071 Sum_probs=112.7
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCc-eEEEEEeCCCCChHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFE-IRVRVCVSDPFDEFNVAK 257 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~ 257 (583)
-..++|++..++.|..++.... ...+.|+|++|+||||+|+.+++.......+. ..+.++.+...... .+.
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~~-------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~ 107 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSAN-------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGIS-IVR 107 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCTT-------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHH-HHT
T ss_pred HHHhhCCHHHHHHHHHHHhcCC-------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchH-HHH
Confidence 3568999999999999985432 22388999999999999999987421111111 12333333322222 222
Q ss_pred HHHHHhhcC-ccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchH-HHhhh-c
Q 036323 258 ATIEELEGS-AIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKET-VARMM-E 334 (583)
Q Consensus 258 ~il~~l~~~-~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~-v~~~~-~ 334 (583)
+.+...... ....... .....-.+++-+|++|++..........+...+.......++|++|.... +...+ .
T Consensus 108 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s 182 (353)
T 1sxj_D 108 EKVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS 182 (353)
T ss_dssp THHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc
Confidence 222221111 0000000 00011123456999999965544455666666655555666777665432 21111 1
Q ss_pred CCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhh
Q 036323 335 STDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTI 390 (583)
Q Consensus 335 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 390 (583)
....+.+.+++.++....+...+......- ..+....|++.++|.|..+..+
T Consensus 183 R~~~i~~~~~~~~~~~~~l~~~~~~~~~~i----~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 183 QCSKFRFKALDASNAIDRLRFISEQENVKC----DDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHTTTCCC----CHHHHHHHHHHTSSCHHHHHHH
T ss_pred cCceEEeCCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 235789999999999999988764322211 1456788999999998865443
No 25
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.58 E-value=2.6e-07 Score=94.72 Aligned_cols=199 Identities=13% Similarity=0.085 Sum_probs=106.6
Q ss_pred CCceeechhHHHH---HHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEe----CCCCC
Q 036323 179 VSEVRGRDEEMRS---IKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCV----SDPFD 251 (583)
Q Consensus 179 ~~~~vGR~~e~~~---l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~----~~~~~ 251 (583)
...|+|++..++. +.+.+.... ...+.+.|+|++|+|||+||+.+++... .... .+.+.. +....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~-----~~~~~vLl~GppGtGKT~la~~la~~l~--~~~~-~~~~~~~~~~~~~~~ 114 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK-----IAGRAVLIAGQPGTGKTAIAMGMAQALG--PDTP-FTAIAGSEIFSLEMS 114 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC-----CTTCEEEEEESTTSSHHHHHHHHHHHHC--SSCC-EEEEEGGGGSCSSSC
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC-----CCCCEEEEECCCCCCHHHHHHHHHHHhc--ccCC-cccccchhhhhcccc
Confidence 4579999988766 455554332 2246889999999999999999987432 1111 112221 12223
Q ss_pred hHHHHHHHHHHhhcC---------------------cc-------c-----cccHHHHHHHHHHHh--cCC----ceeEE
Q 036323 252 EFNVAKATIEELEGS---------------------AI-------D-----LHELNSLLRRIGANI--AGQ----KFFMV 292 (583)
Q Consensus 252 ~~~~~~~il~~l~~~---------------------~~-------~-----~~~~~~~~~~l~~~l--~~k----~~LlV 292 (583)
....+.+.+...... .. . ............... .++ +.+|+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ 194 (368)
T 3uk6_A 115 KTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLF 194 (368)
T ss_dssp HHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEE
T ss_pred hhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEE
Confidence 333443333321110 00 0 111112222111111 233 45999
Q ss_pred EcCCCcccccchHhhHHhhccCCCCceEEEecC-----------c--hHHHh-hhcCCCeEEcCCCChHHHHHHHHHHhc
Q 036323 293 LDNLWTDDYRKWEPFRNCLMNGLRGSKILITTR-----------K--ETVAR-MMESTDIVYVQGLSELECWSLFRRFAL 358 (583)
Q Consensus 293 lDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR-----------~--~~v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 358 (583)
||++...+......+...+....... ++++|. + ..+.. .......+.+.+++.++..+++...+.
T Consensus 195 IDEi~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~ 273 (368)
T 3uk6_A 195 IDEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCE 273 (368)
T ss_dssp EESGGGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EhhccccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHH
Confidence 99997665555566666554433333 433332 1 11111 112234589999999999999998764
Q ss_pred cCCCCCCCchHHHHHHHHhhhCC-CCccchhhh
Q 036323 359 SGRTPSECDQLEGIGRGIVRKCK-GLPLAAKTI 390 (583)
Q Consensus 359 ~~~~~~~~~~~~~~~~~I~~~c~-GlPLai~~~ 390 (583)
..... -..+....|++.+. |.|..+..+
T Consensus 274 ~~~~~----~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 274 EEDVE----MSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp HTTCC----BCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HcCCC----CCHHHHHHHHHHhcCCCHHHHHHH
Confidence 32221 12456677888887 777655443
No 26
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.58 E-value=4.3e-07 Score=95.18 Aligned_cols=182 Identities=13% Similarity=0.030 Sum_probs=105.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccC--ceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNF--EIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIA 285 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f--~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 285 (583)
...+.|+|++|+||||||+.+++. ....+ ..+++++.. .+...+...+.... . ..+...+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~~-----~----~~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITSE------KFLNDLVDSMKEGK-----L----NEFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEHH------HHHHHHHHHHHTTC-----H----HHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeHH------HHHHHHHHHHHccc-----H----HHHHHHhc
Confidence 667899999999999999999873 32232 123444432 33444444443221 1 12223333
Q ss_pred CCceeEEEcCCCcccc--cchHhhHHhhcc-CCCCceEEEecCch---------HHHhhhcCCCeEEcCCCChHHHHHHH
Q 036323 286 GQKFFMVLDNLWTDDY--RKWEPFRNCLMN-GLRGSKILITTRKE---------TVARMMESTDIVYVQGLSELECWSLF 353 (583)
Q Consensus 286 ~k~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~IlvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf 353 (583)
.++-+|+|||++.... ...+.+...+.. ...|..||+||.+. .+...+.....+.+.+++.++-.+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3678999999965332 223334444422 23567788888752 22222333467899999999999999
Q ss_pred HHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhhhhh------ccC-CCHHHHHHHHhhh
Q 036323 354 RRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIGSLL------QFK-RTKEEWQSALDSE 410 (583)
Q Consensus 354 ~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~~~L------~~~-~~~~~w~~~l~~~ 410 (583)
.+.+......-. .++...|++.++|.+-.+.-+...+ ... -+.+.+..++...
T Consensus 273 ~~~~~~~~~~i~----~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 273 RKMLEIEHGELP----EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDF 332 (440)
T ss_dssp HHHHHHHTCCCC----TTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHTSTT
T ss_pred HHHHHHcCCCCC----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 887642221111 2346678899999887554332221 111 2566666666543
No 27
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.54 E-value=6.7e-07 Score=93.64 Aligned_cols=180 Identities=14% Similarity=0.169 Sum_probs=103.6
Q ss_pred CCceeechhHH---HHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHH
Q 036323 179 VSEVRGRDEEM---RSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNV 255 (583)
Q Consensus 179 ~~~~vGR~~e~---~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~ 255 (583)
-..++|.+..+ ..|...+.... ...+.|+|++|+||||||+.+++. ....| +.++........
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~-------~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~ 90 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGH-------LHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKE 90 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTC-------CCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCC-------CcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHH
Confidence 45689998888 67777775443 467899999999999999999874 22222 222221111111
Q ss_pred HHHHHHHhhcCccccccHHHHHHHHHH-HhcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchH--HHh-
Q 036323 256 AKATIEELEGSAIDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKET--VAR- 331 (583)
Q Consensus 256 ~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~--v~~- 331 (583)
.+.+ ...... ...+++.+|+||+++.-.....+.|...+..+ .-.-|..||.+.. +..
T Consensus 91 ir~~-----------------~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~-~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 91 IREA-----------------IERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG-TITFIGATTENPSFELNSA 152 (447)
T ss_dssp HHHH-----------------HHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT-SCEEEEEESSCGGGSSCHH
T ss_pred HHHH-----------------HHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC-ceEEEecCCCCcccccCHH
Confidence 1111 111111 12467889999999776555666666666542 2222333555542 111
Q ss_pred hhcCCCeEEcCCCChHHHHHHHHHHhccCCCC---CCCchHHHHHHHHhhhCCCCccchhhh
Q 036323 332 MMESTDIVYVQGLSELECWSLFRRFALSGRTP---SECDQLEGIGRGIVRKCKGLPLAAKTI 390 (583)
Q Consensus 332 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~---~~~~~~~~~~~~I~~~c~GlPLai~~~ 390 (583)
.......+.+.+++.++...++.+.+...... ....-..+..+.|++.++|.+-.+..+
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 12235588899999999999998876431110 111123456677888899887755543
No 28
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.50 E-value=8.5e-07 Score=87.34 Aligned_cols=189 Identities=15% Similarity=0.117 Sum_probs=101.5
Q ss_pred ccCCceeechhHHHHHHHHhhcCCCC------CCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCC
Q 036323 177 IDVSEVRGRDEEMRSIKSMLLCQGSD------QQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPF 250 (583)
Q Consensus 177 ~~~~~~vGR~~e~~~l~~~L~~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 250 (583)
.....++|.+..+++|.+.+...... .+-...+.+.|+|++|+|||+||+.+++. .... .+.+..+.-.
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~---~~~v~~~~~~ 88 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNAT---FIRVVGSELV 88 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCE---EEEEEGGGGC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCC---EEEEehHHHH
Confidence 34567999999999999887432000 00023456889999999999999999874 2222 2223322111
Q ss_pred ChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcc-----------cccchHhhHHhh---c--cC
Q 036323 251 DEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTD-----------DYRKWEPFRNCL---M--NG 314 (583)
Q Consensus 251 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l~~~l---~--~~ 314 (583)
. .. .......+...+......++.+|+||+++.- +......+...+ . ..
T Consensus 89 ~--------------~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 89 K--------------KF-IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp C--------------CS-TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred H--------------hc-cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 0 00 0000111222222233456789999999542 111112232222 2 22
Q ss_pred CCCceEEEecCchHHHh-h-hc--C-CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCC-Cccchh
Q 036323 315 LRGSKILITTRKETVAR-M-ME--S-TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKG-LPLAAK 388 (583)
Q Consensus 315 ~~gs~IlvTtR~~~v~~-~-~~--~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G-lPLai~ 388 (583)
..+..||.||....... . .. . ...+.+.+++.++..+++...+..... ..... ...|++.+.| .|-.|.
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHH
Confidence 34567777887543221 1 11 1 346889999999999999887643221 11112 3456777766 444444
Q ss_pred hh
Q 036323 389 TI 390 (583)
Q Consensus 389 ~~ 390 (583)
.+
T Consensus 229 ~l 230 (285)
T 3h4m_A 229 AI 230 (285)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 29
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.46 E-value=1e-06 Score=94.47 Aligned_cols=196 Identities=12% Similarity=0.140 Sum_probs=107.8
Q ss_pred CCceeechhHHHHHHHHhhcCC----------CCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCC
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQG----------SDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSD 248 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~----------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 248 (583)
-.+++|++..+++|.+++.... ...+.+..+.+.|+|++|+|||+||+.+++.. .+ ..+.++.+.
T Consensus 38 ~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~ 112 (516)
T 1sxj_A 38 LQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASD 112 (516)
T ss_dssp GGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTS
T ss_pred HHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCC
Confidence 4579999999999999986410 00001235789999999999999999998843 12 233444444
Q ss_pred CCChHHHHHHHHHHhhcCccccccHHHHHHHHH--HHhcCCceeEEEcCCCcccccc---hHhhHHhhccCCCCceEEEe
Q 036323 249 PFDEFNVAKATIEELEGSAIDLHELNSLLRRIG--ANIAGQKFFMVLDNLWTDDYRK---WEPFRNCLMNGLRGSKILIT 323 (583)
Q Consensus 249 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~--~~l~~k~~LlVlDdv~~~~~~~---~~~l~~~l~~~~~gs~IlvT 323 (583)
..... .....+....... .......... ....+++.+|+||+++.-.... +..+...+... +..||++
T Consensus 113 ~~~~~-~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli 185 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNM----SVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILI 185 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBC----CSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEE
T ss_pred cchHH-HHHHHHHHHhccc----cHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEE
Confidence 33322 2222222111100 0000000000 0123567899999996532221 24444444332 3335554
Q ss_pred cCchH---HHhhhcCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCcc-chhhh
Q 036323 324 TRKET---VARMMESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPL-AAKTI 390 (583)
Q Consensus 324 tR~~~---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~ 390 (583)
+.+.. +.........+.+.+++.++..+++...+......-. .+....|++.++|.+- ++..+
T Consensus 186 ~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~----~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 186 CNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD----PNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp ESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC----TTHHHHHHHHTTTCHHHHHHHH
T ss_pred EcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCcHHHHHHHH
Confidence 44321 2221222457899999999999998877643322222 2346678899999554 45444
No 30
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.46 E-value=1.4e-06 Score=87.60 Aligned_cols=180 Identities=14% Similarity=0.098 Sum_probs=104.6
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
-.+++|.+..++.|.+++.... ...++.+.|++|+|||++|+.+++.. . ...+.++.+.. . ......
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~------~~~~~L~~G~~G~GKT~la~~la~~l--~---~~~~~i~~~~~-~-~~~i~~ 91 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGK------IPHIILHSPSPGTGKTTVAKALCHDV--N---ADMMFVNGSDC-K-IDFVRG 91 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTC------CCSEEEECSSTTSSHHHHHHHHHHHT--T---EEEEEEETTTC-C-HHHHHT
T ss_pred HHHHhCcHHHHHHHHHHHHcCC------CCeEEEeeCcCCCCHHHHHHHHHHHh--C---CCEEEEccccc-C-HHHHHH
Confidence 4578999999999999997432 34678888999999999999998742 1 12344443331 1 111222
Q ss_pred HHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCccc-ccchHhhHHhhccCCCCceEEEecCchH-HHhhh-cC
Q 036323 259 TIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD-YRKWEPFRNCLMNGLRGSKILITTRKET-VARMM-ES 335 (583)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~IlvTtR~~~-v~~~~-~~ 335 (583)
.+....... ...+++.+|+||+++.-. ....+.+...+.....+..+|+||.... +...+ ..
T Consensus 92 ~~~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 92 PLTNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp HHHHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred HHHHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 111111000 012467899999997654 4455556655544344567777776543 11111 11
Q ss_pred CCeEEcCCCChHHHHHH-------HHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhh
Q 036323 336 TDIVYVQGLSELECWSL-------FRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKT 389 (583)
Q Consensus 336 ~~~~~l~~L~~~ea~~L-------f~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~ 389 (583)
...+++.+++.++-.++ +...+......-.. .+....|++.++|.+..+..
T Consensus 157 ~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 157 CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD---MKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC---HHHHHHHHHHTCSCTTHHHH
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHhCCCCHHHHHH
Confidence 45799999998874333 22222211111111 25667788889888775443
No 31
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.43 E-value=8.9e-07 Score=90.11 Aligned_cols=197 Identities=11% Similarity=0.107 Sum_probs=106.7
Q ss_pred CCceeechhHHHHHHHHh-hcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCc---cccc-cCce-------------
Q 036323 179 VSEVRGRDEEMRSIKSML-LCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDN---DVIN-NFEI------------- 240 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L-~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~-~f~~------------- 240 (583)
-..++|.+..++.+.+++ ... .... +.|+|++|+|||||++.+++.. .... .++.
T Consensus 13 ~~~~vg~~~~~~~l~~~~~~~~------~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~ 85 (354)
T 1sxj_E 13 LNALSHNEELTNFLKSLSDQPR------DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLEL 85 (354)
T ss_dssp GGGCCSCHHHHHHHHTTTTCTT------CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------
T ss_pred HHHhcCCHHHHHHHHHHHhhCC------CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccccccee
Confidence 356899999999888877 332 2233 8999999999999998876621 1000 0010
Q ss_pred -------EEEEEeCCCC-ChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhc
Q 036323 241 -------RVRVCVSDPF-DEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLM 312 (583)
Q Consensus 241 -------~~wv~~~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~ 312 (583)
.+.+..+... ......++++..+.....- .... .+.. +.+++-++|||++..-+....+.+...+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le 159 (354)
T 1sxj_E 86 NVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV----DFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTME 159 (354)
T ss_dssp CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHH
T ss_pred eeecccceEEecHhhcCCcchHHHHHHHHHHHHhccc----cccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHH
Confidence 0111111100 0000122222222111000 0000 0000 23466799999997755555666777665
Q ss_pred cCCCCceEEEecCch-HHHhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhh
Q 036323 313 NGLRGSKILITTRKE-TVARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTI 390 (583)
Q Consensus 313 ~~~~gs~IlvTtR~~-~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 390 (583)
....++.+|++|.+. .+...+ .....+++.+++.++....+...+...+..-.. .+....|++.++|.+..+..+
T Consensus 160 ~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 160 KYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET---KDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp HSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC---SHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc---HHHHHHHHHHcCCCHHHHHHH
Confidence 545567777777653 222222 224689999999999999998876432211110 234567888999988755544
Q ss_pred h
Q 036323 391 G 391 (583)
Q Consensus 391 ~ 391 (583)
.
T Consensus 237 l 237 (354)
T 1sxj_E 237 L 237 (354)
T ss_dssp H
T ss_pred H
Confidence 3
No 32
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.42 E-value=3.8e-06 Score=84.73 Aligned_cols=171 Identities=9% Similarity=0.050 Sum_probs=103.5
Q ss_pred hhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccc--------------------cCceEEEEE
Q 036323 186 DEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVIN--------------------NFEIRVRVC 245 (583)
Q Consensus 186 ~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~f~~~~wv~ 245 (583)
++..+.+...+..+ .-.+.+.++|++|+|||++|+.+.+...-.. |++ ..++.
T Consensus 8 ~~~~~~l~~~i~~~------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~ 80 (334)
T 1a5t_A 8 RPDFEKLVASYQAG------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLA 80 (334)
T ss_dssp HHHHHHHHHHHHTT------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEEC
T ss_pred HHHHHHHHHHHHcC------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEe
Confidence 45566777777543 2355788999999999999988876321100 122 12222
Q ss_pred eCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHh-----cCCceeEEEcCCCcccccchHhhHHhhccCCCCceE
Q 036323 246 VSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANI-----AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKI 320 (583)
Q Consensus 246 ~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 320 (583)
... .......+.+. .+.+.+ .+++-++|+|+++.-+....+.|...+.....++.+
T Consensus 81 ~~~------------------~~~~~~i~~ir-~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~ 141 (334)
T 1a5t_A 81 PEK------------------GKNTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWF 141 (334)
T ss_dssp CCT------------------TCSSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEE
T ss_pred ccc------------------cCCCCCHHHHH-HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEE
Confidence 110 00111122222 122222 356779999999765555566677777665556777
Q ss_pred EEecCchH-HHhhh-cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhhh
Q 036323 321 LITTRKET-VARMM-ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTIG 391 (583)
Q Consensus 321 lvTtR~~~-v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~~ 391 (583)
|++|.+.. +...+ .....+++.+++.++..+.+.... ..+ .+.+..+++.++|.|..+..+.
T Consensus 142 Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~----~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 142 FLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV-----TMS----QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC-----CCC----HHHHHHHHHHTTTCHHHHHHTT
T ss_pred EEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc-----CCC----HHHHHHHHHHcCCCHHHHHHHh
Confidence 77666542 32222 235689999999999999998875 111 3455779999999998665544
No 33
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.41 E-value=8.9e-07 Score=80.79 Aligned_cols=46 Identities=28% Similarity=0.351 Sum_probs=38.2
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...++||+.+++.+.+.+... ..+.+.|+|++|+|||+||+.+++.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~-------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRR-------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS-------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCC-------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999543 2456689999999999999998774
No 34
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.41 E-value=5.6e-06 Score=83.14 Aligned_cols=156 Identities=15% Similarity=0.109 Sum_probs=87.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAG 286 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 286 (583)
....+.|+|++|+||||||+.+++..... .+ .+++++. ..+...+...+... ..... ...+ .
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~-~~-~~~~i~~------~~~~~~~~~~~~~~-----~~~~~----~~~~-~ 97 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR-GY-RVIYSSA------DDFAQAMVEHLKKG-----TINEF----RNMY-K 97 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT-TC-CEEEEEH------HHHHHHHHHHHHHT-----CHHHH----HHHH-H
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC-CC-EEEEEEH------HHHHHHHHHHHHcC-----cHHHH----HHHh-c
Confidence 35678899999999999999998742111 11 2344443 23333333333211 11111 1222 2
Q ss_pred CceeEEEcCCCcccc--cchHhhHHhhcc-CCCCceEEEecCch---------HHHhhhcCCCeEEcCCCChHHHHHHHH
Q 036323 287 QKFFMVLDNLWTDDY--RKWEPFRNCLMN-GLRGSKILITTRKE---------TVARMMESTDIVYVQGLSELECWSLFR 354 (583)
Q Consensus 287 k~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~IlvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~ 354 (583)
++.+|+|||+..... .....+...+.. ...|..||+||... .+...+.....+++.+ +.++...++.
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~ 176 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIK 176 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHH
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHH
Confidence 367999999965332 122334443321 12355677777532 1222233346789999 9999999998
Q ss_pred HHhccCCCCCCCchHHHHHHHHhhhCCCCccc
Q 036323 355 RFALSGRTPSECDQLEGIGRGIVRKCKGLPLA 386 (583)
Q Consensus 355 ~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 386 (583)
..+......-. .++...|++.+ |.+-.
T Consensus 177 ~~~~~~~~~l~----~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 177 EKLKEFNLELR----KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHTTCCCC----HHHHHHHHHHC-SSHHH
T ss_pred HHHHhcCCCCC----HHHHHHHHHhC-CCHHH
Confidence 87643222111 45567788888 76653
No 35
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.41 E-value=4.3e-06 Score=81.03 Aligned_cols=189 Identities=11% Similarity=0.064 Sum_probs=97.8
Q ss_pred CCceeechhHHHHHHHHhhc---CCC--CCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChH
Q 036323 179 VSEVRGRDEEMRSIKSMLLC---QGS--DQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEF 253 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~---~~~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (583)
-.+++|.+..++.|.+++.. ... ..+....+.+.|+|++|+|||+||+.+++. .... .+.++.+.-.+..
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEVI 79 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhhc
Confidence 45689998888777665432 110 000123456889999999999999999873 2222 2334433321100
Q ss_pred HHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcc------------cccch---HhhHHhhcc--CCC
Q 036323 254 NVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTD------------DYRKW---EPFRNCLMN--GLR 316 (583)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------------~~~~~---~~l~~~l~~--~~~ 316 (583)
.......+...+.......+.+|+||+++.- +.... ..+...+.. ...
T Consensus 80 ---------------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 80 ---------------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp ---------------TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred ---------------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 0001111222222333456789999999642 11111 223222222 223
Q ss_pred CceEEEecCchHHH-hhh-c--C-CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCcc-chhhh
Q 036323 317 GSKILITTRKETVA-RMM-E--S-TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPL-AAKTI 390 (583)
Q Consensus 317 gs~IlvTtR~~~v~-~~~-~--~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~ 390 (583)
+..||.||...... ..+ . . ...+.+.+.+.++-.+++...+...... .........+++.+.|.+- .|..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~---~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT---QSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC---BTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC---cchhhHHHHHHHHCCCCCHHHHHHH
Confidence 45666666554321 111 1 1 3577899999999999998876432211 1112234668888887654 44333
No 36
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.36 E-value=1.7e-06 Score=86.13 Aligned_cols=162 Identities=14% Similarity=0.080 Sum_probs=88.4
Q ss_pred ceeechhHHHHHHHHhhcCC--------CCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCCh
Q 036323 181 EVRGRDEEMRSIKSMLLCQG--------SDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDE 252 (583)
Q Consensus 181 ~~vGR~~e~~~l~~~L~~~~--------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 252 (583)
.++|.+..++.|.+.+.... +-........+.|+|++|+|||+||+.+++............++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 46888888888776653210 0001234557889999999999999988763211111111122333210
Q ss_pred HHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcc---------cccchHhhHHhhccCCCCceEEEe
Q 036323 253 FNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTD---------DYRKWEPFRNCLMNGLRGSKILIT 323 (583)
Q Consensus 253 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~IlvT 323 (583)
. +..... ......+...+... +..+|+||+++.- .......|...+.....+..+|+|
T Consensus 109 -~--------l~~~~~-g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 -D--------LVGQYI-GHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp -G--------TCCSST-TCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred -H--------hhhhcc-cccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 0 000000 00011112222221 3569999999632 223345566666655566778888
Q ss_pred cCchHHHhh------h--cCCCeEEcCCCChHHHHHHHHHHhc
Q 036323 324 TRKETVARM------M--ESTDIVYVQGLSELECWSLFRRFAL 358 (583)
Q Consensus 324 tR~~~v~~~------~--~~~~~~~l~~L~~~ea~~Lf~~~a~ 358 (583)
|........ + .....+.+.+++.++-..++...+.
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 765322110 1 1136789999999999999988764
No 37
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.32 E-value=9.3e-06 Score=79.29 Aligned_cols=172 Identities=14% Similarity=0.161 Sum_probs=90.7
Q ss_pred CceeechhHHHHHHH-------HhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCCh
Q 036323 180 SEVRGRDEEMRSIKS-------MLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDE 252 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~-------~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 252 (583)
..++|....++++.. .+... .....+.+.|+|++|+|||+||+.+++. .. +.. +.++.+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~----~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~--~~~-~~i~~~~~--- 100 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNS----DRTPLVSVLLEGPPHSGKTALAAKIAEE--SN--FPF-IKICSPDK--- 100 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHC----SSCSEEEEEEECSTTSSHHHHHHHHHHH--HT--CSE-EEEECGGG---
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhcc----CCCCCeEEEEECCCCCcHHHHHHHHHHH--hC--CCE-EEEeCHHH---
Confidence 356787777666655 33221 1245778999999999999999999884 21 121 22222211
Q ss_pred HHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcc------cccc----hHhhHHhhcc---CCCCce
Q 036323 253 FNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTD------DYRK----WEPFRNCLMN---GLRGSK 319 (583)
Q Consensus 253 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------~~~~----~~~l~~~l~~---~~~gs~ 319 (583)
+.+. ........+...+......++.+|+||+++.- .... ...+...+.. ......
T Consensus 101 ----------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 169 (272)
T 1d2n_A 101 ----------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL 169 (272)
T ss_dssp ----------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred ----------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence 0000 00001112222233333467889999998432 1111 1223232221 222344
Q ss_pred EEEecCchHHHhh---hcC-CCeEEcCCCCh-HHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCC
Q 036323 320 ILITTRKETVARM---MES-TDIVYVQGLSE-LECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGL 383 (583)
Q Consensus 320 IlvTtR~~~v~~~---~~~-~~~~~l~~L~~-~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~Gl 383 (583)
||.||........ ... ...+++++++. ++...++.... . .. .+....|++.+.|.
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~---~--~~----~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG---N--FK----DKERTTIAQQVKGK 229 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT---C--SC----HHHHHHHHHHHTTS
T ss_pred EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC---C--CC----HHHHHHHHHHhcCC
Confidence 6677776644332 112 45688999988 66666665531 1 11 34466788888884
No 38
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.30 E-value=8.7e-07 Score=77.79 Aligned_cols=114 Identities=18% Similarity=0.071 Sum_probs=69.3
Q ss_pred ceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHH
Q 036323 181 EVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATI 260 (583)
Q Consensus 181 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 260 (583)
.++|+...+.++.+.+..-. ....-|.|+|.+|+|||++|+.+++..... ... .+ +++....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a-----~~~~~vll~G~~GtGKt~lA~~i~~~~~~~-~~~-~v-~~~~~~~~~-------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS-----ETDIAVWLYGAPGTGRMTGARYLHQFGRNA-QGE-FV-YRELTPDNA-------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT-----TCCSCEEEESSTTSSHHHHHHHHHHSSTTT-TSC-CE-EEECCTTTS--------
T ss_pred CceeCCHHHHHHHHHHHHHh-----CCCCCEEEECCCCCCHHHHHHHHHHhCCcc-CCC-EE-EECCCCCcc--------
Confidence 57899999999998875432 122347899999999999999998742211 112 23 555543221
Q ss_pred HHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCc
Q 036323 261 EELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRK 326 (583)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~ 326 (583)
...... +.. ...-+|+||+++.-.......+...+.......++|.||..
T Consensus 66 ----------~~~~~~---~~~---a~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ----------PQLNDF---IAL---AQGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ----------SCHHHH---HHH---HTTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ----------hhhhcH---HHH---cCCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 011111 111 13457999999765555556666666555556677777764
No 39
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.29 E-value=5.6e-06 Score=83.71 Aligned_cols=181 Identities=10% Similarity=0.097 Sum_probs=103.2
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCc-eEEEEEeCCCCChHHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFE-IRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~ 258 (583)
..++|.+..++.|...+.... .+.+.++|++|+||||+|+.+++... ...+. .+.-++.+....... .+.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~-------~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~-ir~ 95 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK-------LPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDV-VRN 95 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC-------CCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHH-HHT
T ss_pred HHhcCcHHHHHHHHHHHhcCC-------CceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHH-HHH
Confidence 457899988999888886432 22388999999999999999887311 11111 112222222111111 111
Q ss_pred HHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchH-HHhhh-cCC
Q 036323 259 TIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKET-VARMM-EST 336 (583)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~-v~~~~-~~~ 336 (583)
++..+.... ..+.+.+-++|+|+++.-.....+.|...+......+.+|++|.... +...+ ...
T Consensus 96 ~i~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 96 QIKDFASTR--------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp HHHHHHHBC--------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHHhhc--------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 111111000 00123467899999965444455666666655455666777665432 21111 224
Q ss_pred CeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccch
Q 036323 337 DIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAA 387 (583)
Q Consensus 337 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai 387 (583)
..+.+.+++.++..+.+...+-.....- ..+..+.|++.++|.+--+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~i----~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKLKL----SPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCB----CHHHHHHHHHHHTTCHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 5788999999999888887653222111 1445677888889987643
No 40
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.28 E-value=1.1e-05 Score=81.00 Aligned_cols=190 Identities=13% Similarity=0.083 Sum_probs=103.6
Q ss_pred ccCCceeechhHHHHHHHHhhcCC-----CCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCC
Q 036323 177 IDVSEVRGRDEEMRSIKSMLLCQG-----SDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFD 251 (583)
Q Consensus 177 ~~~~~~vGR~~e~~~l~~~L~~~~-----~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 251 (583)
..-..++|.+..++.|.+.+..+. ........+-+.|+|++|+|||+||+.+++. ....| +.++.+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~---- 85 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS---- 85 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHH----
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchH----
Confidence 334678999999999998873110 0001223467889999999999999999873 22222 222221
Q ss_pred hHHHHHHHHHHhhcCccccccHHHHHHHH-HHHhcCCceeEEEcCCCccccc-----------chHhhHHhhc---cCCC
Q 036323 252 EFNVAKATIEELEGSAIDLHELNSLLRRI-GANIAGQKFFMVLDNLWTDDYR-----------KWEPFRNCLM---NGLR 316 (583)
Q Consensus 252 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~~~~-----------~~~~l~~~l~---~~~~ 316 (583)
.+ .. .. ....+.....+ ...-..++.+|+||++..-... ....+...+. ....
T Consensus 86 --~l----~~----~~--~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 --DL----VS----KW--MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp --HH----HT----TT--GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred --HH----hh----cc--cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 11 11 10 01112222222 2222456789999999542110 1233333332 2334
Q ss_pred CceEEEecCchHHH-hhh--cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCC-Cccchhhhh
Q 036323 317 GSKILITTRKETVA-RMM--ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKG-LPLAAKTIG 391 (583)
Q Consensus 317 gs~IlvTtR~~~v~-~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G-lPLai~~~~ 391 (583)
+..||.||...... ..+ .-...+.+...+.++-.+++...+........ ......|++.+.| .+-.|..+.
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~----~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT----KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC----HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 55666677653221 111 12456788899999999999987643221111 3345678888887 444454443
No 41
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.20 E-value=8.6e-05 Score=74.72 Aligned_cols=178 Identities=16% Similarity=0.179 Sum_probs=95.4
Q ss_pred CCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
-..++|.+..++.+...+.... ........+.|+|++|+||||||+.+++.. ...|. ..+.....
T Consensus 24 l~~~~g~~~~~~~l~~~i~~~~--~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l--~~~~~-----~~sg~~~~------ 88 (334)
T 1in4_A 24 LDEFIGQENVKKKLSLALEAAK--MRGEVLDHVLLAGPPGLGKTTLAHIIASEL--QTNIH-----VTSGPVLV------ 88 (334)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHH--HHTCCCCCEEEESSTTSSHHHHHHHHHHHH--TCCEE-----EEETTTCC------
T ss_pred HHHccCcHHHHHHHHHHHHHHH--hcCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCCEE-----EEechHhc------
Confidence 3467898888887776664320 001234678999999999999999998732 11111 11111100
Q ss_pred HHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCC------------------CCceE
Q 036323 259 TIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL------------------RGSKI 320 (583)
Q Consensus 259 il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~------------------~gs~I 320 (583)
. ...+...+ ..+ .++-++++|++..-.....+.+...+.... +...+
T Consensus 89 ----------~---~~~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 89 ----------K---QGDMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp ----------S---HHHHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred ----------C---HHHHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 0 01111111 111 234577888885433223333332222110 01122
Q ss_pred E-EecCchHHHhhhcC--CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccchhhh
Q 036323 321 L-ITTRKETVARMMES--TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTI 390 (583)
Q Consensus 321 l-vTtR~~~v~~~~~~--~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 390 (583)
+ .|++...+...+.. .-.+.+++.+.++-.+++.+.+...... ...+.+..|++.+.|.|-.+..+
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~----~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE----IEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC----BCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC----cCHHHHHHHHHhcCCChHHHHHH
Confidence 2 34444333222211 2357899999999999998876322211 12456788999999999765444
No 42
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.20 E-value=1.6e-05 Score=80.98 Aligned_cols=188 Identities=12% Similarity=0.040 Sum_probs=101.7
Q ss_pred CCceeechhHHHHHHHHhhcC----CC-CCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQ----GS-DQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEF 253 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~----~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (583)
-..++|.+..++.|.+.+... .. .......+.+.|+|++|+|||+||+.+++.. .. ..+.++.+.-...
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~--~~---~~~~i~~~~l~~~- 156 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS--GA---TFFSISASSLTSK- 156 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT--TC---EEEEEEGGGGCCS-
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc--CC---eEEEEehHHhhcc-
Confidence 456899999999998887421 00 0001235678899999999999999998732 11 1233444321110
Q ss_pred HHHHHHHHHhhcCccccccHHHHHHHHH-HHhcCCceeEEEcCCCcccc-----------cchHhhHHhhcc----CCCC
Q 036323 254 NVAKATIEELEGSAIDLHELNSLLRRIG-ANIAGQKFFMVLDNLWTDDY-----------RKWEPFRNCLMN----GLRG 317 (583)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~----~~~g 317 (583)
. ..........+. .....++.+|+||+++.-.. .....+...+.. ...+
T Consensus 157 -------------~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 157 -------------W--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp -------------S--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred -------------c--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 0 001111112222 22235678999999943110 112233333322 1234
Q ss_pred ceEEEecCchH-HHhhh--cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCC-Cccchhhhh
Q 036323 318 SKILITTRKET-VARMM--ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKG-LPLAAKTIG 391 (583)
Q Consensus 318 s~IlvTtR~~~-v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G-lPLai~~~~ 391 (583)
..||.||.... +...+ .....+.+...+.++..+++...+....... .......|++.+.| .|-.|..+.
T Consensus 222 v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l----~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL----SEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC----CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc----cHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45555665432 21111 1134678889999998888887763221111 13456778888888 455555544
No 43
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.18 E-value=1.8e-05 Score=80.50 Aligned_cols=189 Identities=12% Similarity=0.079 Sum_probs=100.7
Q ss_pred cCCceeechhHHHHHHHHhhcC----CC-CCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCCh
Q 036323 178 DVSEVRGRDEEMRSIKSMLLCQ----GS-DQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDE 252 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~~~----~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 252 (583)
.-..++|.+..++.|.+.+..+ .. .......+-|.|+|++|+|||+||+.+++.. ...| +.++.+
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~~~---~~v~~~----- 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--NSTF---FSVSSS----- 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH--TCEE---EEEEHH-----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEeeHH-----
Confidence 3456899999999998877321 00 0011233467899999999999999999842 2222 222221
Q ss_pred HHHHHHHHHHhhcCccccccHHHHHHHH-HHHhcCCceeEEEcCCCccccc-----------chHhhHHhhcc---CCCC
Q 036323 253 FNVAKATIEELEGSAIDLHELNSLLRRI-GANIAGQKFFMVLDNLWTDDYR-----------KWEPFRNCLMN---GLRG 317 (583)
Q Consensus 253 ~~~~~~il~~l~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~~~~-----------~~~~l~~~l~~---~~~g 317 (583)
.+ ..... ...+.....+ ......++.+|+||+++..... ....+...+.. ...+
T Consensus 119 -~l----~~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 -DL----VSKWM------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp -HH----HSCC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred -HH----hhhhc------chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 11 11000 0011122222 2222457889999999542211 12223333321 2345
Q ss_pred ceEEEecCchHH-Hhhh--cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCC-Cccchhhhh
Q 036323 318 SKILITTRKETV-ARMM--ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKG-LPLAAKTIG 391 (583)
Q Consensus 318 s~IlvTtR~~~v-~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G-lPLai~~~~ 391 (583)
..||.||..... ...+ .....+.+...+.++-.+++...+........ ......|++.+.| .|-.|..+.
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~----~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT----KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC----HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHcCCCCHHHHHHHH
Confidence 556666654421 1111 22456788999999999999887643211111 3345678888888 444455444
No 44
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.18 E-value=6.9e-05 Score=74.99 Aligned_cols=191 Identities=16% Similarity=0.102 Sum_probs=101.7
Q ss_pred cCCceeechhHHHHHHHHhhcC----C-CCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCCh
Q 036323 178 DVSEVRGRDEEMRSIKSMLLCQ----G-SDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDE 252 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~~~----~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 252 (583)
.-..++|.+..++.|.+.+..+ . ........+.+.|+|++|+|||+||+.+++... ... .+.++.+.-.+
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~---~~~i~~~~l~~- 84 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NST---FFSISSSDLVS- 84 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCE---EEEEECCSSCC-
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCc---EEEEEhHHHHh-
Confidence 3457899999888888776321 0 000112346788999999999999999997420 111 22233332111
Q ss_pred HHHHHHHHHHhhcCccccccHHHHHHHHH-HHhcCCceeEEEcCCCccccc-----------chHhhHHhhcc---CCCC
Q 036323 253 FNVAKATIEELEGSAIDLHELNSLLRRIG-ANIAGQKFFMVLDNLWTDDYR-----------KWEPFRNCLMN---GLRG 317 (583)
Q Consensus 253 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~~-----------~~~~l~~~l~~---~~~g 317 (583)
.. ....+.....+. ..-..++.+|+||+++.-... ....+...+.. ...+
T Consensus 85 -------------~~--~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 85 -------------KW--LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp -------------SS--CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred -------------hh--hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 00 001111222222 222457889999999642110 01122222222 2334
Q ss_pred ceEEEecCchHHH-hhh--cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCC-ccchhhhhh
Q 036323 318 SKILITTRKETVA-RMM--ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGL-PLAAKTIGS 392 (583)
Q Consensus 318 s~IlvTtR~~~v~-~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~~~~ 392 (583)
..||.||...... ..+ .-...+.+...+.++-.+++........... .......|++.+.|. +-.|..+..
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l----~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL----TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC----CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC----CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5555566543211 111 2235688888999988899988763221111 134467789999886 444555543
No 45
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.15 E-value=6.3e-05 Score=74.26 Aligned_cols=188 Identities=14% Similarity=0.102 Sum_probs=99.6
Q ss_pred cCCceeechhHHHHHHHHhhcCCC-----CCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCCh
Q 036323 178 DVSEVRGRDEEMRSIKSMLLCQGS-----DQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDE 252 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 252 (583)
.-..++|.+..++.|.+.+..+.. ..-....+.+.|+|++|+|||+||+.+++.. ... .+.++.+.-..
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~--~~~---~~~i~~~~l~~- 92 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC--SAT---FLNISAASLTS- 92 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT--TCE---EEEEESTTTSS-
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh--CCC---eEEeeHHHHhh-
Confidence 345789999999999888743100 0001234678899999999999999998732 211 23334332111
Q ss_pred HHHHHHHHHHhhcCccccccHHHHHHH-HHHHhcCCceeEEEcCCCccccc-----------chHhhHHhhccC-----C
Q 036323 253 FNVAKATIEELEGSAIDLHELNSLLRR-IGANIAGQKFFMVLDNLWTDDYR-----------KWEPFRNCLMNG-----L 315 (583)
Q Consensus 253 ~~~~~~il~~l~~~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~~~-----------~~~~l~~~l~~~-----~ 315 (583)
.. .......... +......++.+|+||++...... ....+...+... .
T Consensus 93 -------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 -------------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp -------------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred -------------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 00 0011112222 22222456789999999542110 011222222211 1
Q ss_pred CCceEEEecCchHH-Hhhh--cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCcc-chhhh
Q 036323 316 RGSKILITTRKETV-ARMM--ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPL-AAKTI 390 (583)
Q Consensus 316 ~gs~IlvTtR~~~v-~~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~ 390 (583)
.+..||.||..... ...+ .....+.+...+.++...++...+....... .......|++.+.|.+- ++..+
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~----~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPL----DTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCS----CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCC----CHHHHHHHHHHcCCCCHHHHHHH
Confidence 24556666665321 1111 1235677888888888888877653222111 13456678888988775 44444
No 46
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.14 E-value=1.7e-05 Score=78.53 Aligned_cols=148 Identities=10% Similarity=0.018 Sum_probs=92.0
Q ss_pred echhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcc-cc-ccCceEEEEEeCC-CCChHHHHHHHH
Q 036323 184 GRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDND-VI-NNFEIRVRVCVSD-PFDEFNVAKATI 260 (583)
Q Consensus 184 GR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~-~~f~~~~wv~~~~-~~~~~~~~~~il 260 (583)
|-++.++.|.+.+... ..+...++|++|+||||+|..+.+... .. .+.+ ..+++.++ ...... .+++.
T Consensus 1 g~~~~~~~L~~~i~~~-------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li 71 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-------EGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIK 71 (305)
T ss_dssp ---CHHHHHHHHHHTC-------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHH
T ss_pred ChHHHHHHHHHHHHCC-------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHH
Confidence 3455667777777432 267889999999999999999876310 11 1233 23444332 122111 22233
Q ss_pred HHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCch-HHHhhhcCCCeE
Q 036323 261 EELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKE-TVARMMESTDIV 339 (583)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~~~~~~~~~~ 339 (583)
+.+...+ ..+++-++|+|+++.-+....+.|...+....+.+.+|++|.++ .+...+.+- .+
T Consensus 72 ~~~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~ 134 (305)
T 2gno_A 72 DFLNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VF 134 (305)
T ss_dssp HHHTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SE
T ss_pred HHHhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eE
Confidence 3332111 12456799999997766666777888887666677777766543 444444445 99
Q ss_pred EcCCCChHHHHHHHHHHh
Q 036323 340 YVQGLSELECWSLFRRFA 357 (583)
Q Consensus 340 ~l~~L~~~ea~~Lf~~~a 357 (583)
++.++++++....+.+..
T Consensus 135 ~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 135 RVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999999999998875
No 47
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.11 E-value=5.9e-06 Score=94.04 Aligned_cols=154 Identities=19% Similarity=0.236 Sum_probs=80.5
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcc---ccccC--ceEEEEEeCCCCChHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDND---VINNF--EIRVRVCVSDPFDEFN 254 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~f--~~~~wv~~~~~~~~~~ 254 (583)
..++||+.++.++.+.|.... ...+.|+|++|+|||+||+.+++... +.... ..+++++++.-..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~-------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~--- 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT-------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA--- 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS-------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--------
T ss_pred cccCCcHHHHHHHHHHHhcCC-------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc---
Confidence 468999999999999996533 33468999999999999999887421 10111 1233333321100
Q ss_pred HHHHHHHHhhcCccccccHHHHHHHHHHHh-c-CCceeEEEcCCCccc--------ccchHhhHHhhccCCCCceEEEec
Q 036323 255 VAKATIEELEGSAIDLHELNSLLRRIGANI-A-GQKFFMVLDNLWTDD--------YRKWEPFRNCLMNGLRGSKILITT 324 (583)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~IlvTt 324 (583)
+. ....+.+.....+...+ . +++.+|+||++..-. ......+...+.. .+..+|.+|
T Consensus 240 ----------g~-~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at 306 (854)
T 1qvr_A 240 ----------GA-KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGAT 306 (854)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEE
T ss_pred ----------cC-ccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEec
Confidence 00 00111122222222222 2 367899999996422 1111223333332 234455555
Q ss_pred CchHH-----Hhhh-cCCCeEEcCCCChHHHHHHHHHH
Q 036323 325 RKETV-----ARMM-ESTDIVYVQGLSELECWSLFRRF 356 (583)
Q Consensus 325 R~~~v-----~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 356 (583)
..... ...+ .....+.+++++.++..+++...
T Consensus 307 ~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 307 TLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp CHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred CchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 44332 1111 12456899999999999988754
No 48
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.11 E-value=4.7e-06 Score=75.89 Aligned_cols=121 Identities=15% Similarity=0.156 Sum_probs=64.8
Q ss_pred chhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhh
Q 036323 185 RDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELE 264 (583)
Q Consensus 185 R~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 264 (583)
.+..++.+.+++..-. ......+.|+|++|+|||||++.+++.......+. +++++ ..++...+.....
T Consensus 19 ~~~~~~~~~~~~~~~~----~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~ 87 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFN----PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMD 87 (180)
T ss_dssp HHHHHHHHHHHHHSCC----GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc----ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhc
Confidence 4445555555554332 23356889999999999999999987422111221 23333 3344444444333
Q ss_pred cCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchH--hhHHhhcc-CCCCceEEEecCc
Q 036323 265 GSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWE--PFRNCLMN-GLRGSKILITTRK 326 (583)
Q Consensus 265 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~--~l~~~l~~-~~~gs~IlvTtR~ 326 (583)
..... .....+ .++-+|||||++....+.|. .+...+.. ...|..+|+||..
T Consensus 88 ~~~~~-----~~~~~~-----~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 88 EGKDT-----KFLKTV-----LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp HTCCS-----HHHHHH-----HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CchHH-----HHHHHh-----cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 22111 222222 25679999999743333343 23333322 1246778888873
No 49
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.10 E-value=3.7e-05 Score=76.21 Aligned_cols=184 Identities=12% Similarity=0.122 Sum_probs=99.0
Q ss_pred cCCceeechhHHHHHHHHhhcCCC------CCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCC
Q 036323 178 DVSEVRGRDEEMRSIKSMLLCQGS------DQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFD 251 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 251 (583)
.-..++|.+..+++|.+.+...-. ...-...+.+.|+|++|+|||+||+.+++.. ... ++.+.
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~--~~~-----~i~v~---- 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QAN-----FISIK---- 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT--TCE-----EEEEC----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh--CCC-----EEEEE----
Confidence 345689999988888887743100 0001235578899999999999999999842 222 22222
Q ss_pred hHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccc--------------cchHhhHHhhcc--CC
Q 036323 252 EFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDY--------------RKWEPFRNCLMN--GL 315 (583)
Q Consensus 252 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~ 315 (583)
...+ .....+.. ..... ..+.......+.+|+||++..-.. .....+...+.. ..
T Consensus 82 ~~~l----~~~~~g~~--~~~~~---~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 152 (301)
T 3cf0_A 82 GPEL----LTMWFGES--EANVR---EIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 152 (301)
T ss_dssp HHHH----HHHHHTTC--TTHHH---HHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT
T ss_pred hHHH----HhhhcCch--HHHHH---HHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC
Confidence 1222 22222211 11122 222223345689999999953110 012334444432 23
Q ss_pred CCceEEEecCchHHH-hh-hc---CCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCccc
Q 036323 316 RGSKILITTRKETVA-RM-ME---STDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPLA 386 (583)
Q Consensus 316 ~gs~IlvTtR~~~v~-~~-~~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPLa 386 (583)
.+..||.||...... .. +. -...+.+...+.++-.+++......... .....+ ..+++.+.|.|-+
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHTCSSCCHH
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-CccchH----HHHHHHcCCCCHH
Confidence 355677777654322 11 12 1357889999999988888877632211 111122 3456667776543
No 50
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.04 E-value=7.9e-05 Score=76.71 Aligned_cols=190 Identities=12% Similarity=0.099 Sum_probs=98.9
Q ss_pred ccCCceeechhHHHHHHHHhhcCCC-----CCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCC
Q 036323 177 IDVSEVRGRDEEMRSIKSMLLCQGS-----DQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFD 251 (583)
Q Consensus 177 ~~~~~~vGR~~e~~~l~~~L~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 251 (583)
..-..++|.+..++.|..++..... .......+.+.|+|++|+|||+||+.+++. ... ..+.++.+.-..
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~---~~~~v~~~~l~~ 186 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNA---TFFNISAASLTS 186 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTC---EEEEECSCCC--
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcC---cEEEeeHHHhhc
Confidence 3446799999999999988732100 000122467889999999999999999873 211 122333322111
Q ss_pred hHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCccc-----------ccchHhhHHhhcc----CCC
Q 036323 252 EFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD-----------YRKWEPFRNCLMN----GLR 316 (583)
Q Consensus 252 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~----~~~ 316 (583)
. . .+ .....+...+...-...+.+|+||+++.-. ......+...+.. ...
T Consensus 187 ~--~-------~g------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 187 K--Y-------VG------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp --------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred c--c-------cc------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 0 0 00 000111111222223456799999995320 0111122222221 122
Q ss_pred CceEEEecCchH-HHhhh-cC-CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCcc-chhhh
Q 036323 317 GSKILITTRKET-VARMM-ES-TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLPL-AAKTI 390 (583)
Q Consensus 317 gs~IlvTtR~~~-v~~~~-~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlPL-ai~~~ 390 (583)
...||.||.... +...+ .. ...+.+...+.++..+++...+...... ...+....|++.+.|..- +|..+
T Consensus 252 ~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~----l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP----LTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC----SCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC----CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 345555665432 11111 12 2468899999999999998876332211 123456778888888544 44443
No 51
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.00 E-value=6.2e-05 Score=78.87 Aligned_cols=191 Identities=15% Similarity=0.097 Sum_probs=100.1
Q ss_pred cCCceeechhHHHHHHHHhhcC----CC-CCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCCh
Q 036323 178 DVSEVRGRDEEMRSIKSMLLCQ----GS-DQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDE 252 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~~~----~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 252 (583)
.-..++|.+..++.|.+.+..+ .. .......+.+.|+|++|+|||+||+.+++.. ....++.++...
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~------~~~~~~~v~~~~-- 203 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA------NNSTFFSISSSD-- 203 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC------CSSEEEEECCC---
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc------CCCCEEEEeHHH--
Confidence 3467899999999998877321 00 0011234678899999999999999999842 111233333211
Q ss_pred HHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccc-------cchHh----hHHhhcc---CCCCc
Q 036323 253 FNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDY-------RKWEP----FRNCLMN---GLRGS 318 (583)
Q Consensus 253 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------~~~~~----l~~~l~~---~~~gs 318 (583)
+.. ...+. .......+.... -..++.+|+||++..-.. ..... +...+.. ...+.
T Consensus 204 --l~~----~~~g~--~~~~~~~~f~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 204 --LVS----KWLGE--SEKLVKNLFQLA---RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp ----------------CCCTHHHHHHHH---HHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred --HHh----hhcch--HHHHHHHHHHHH---HHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCE
Confidence 111 11011 111222222222 235678999999964210 11112 2222221 13455
Q ss_pred eEEEecCchHHH-hh-hcC-CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCC-ccchhhhh
Q 036323 319 KILITTRKETVA-RM-MES-TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGL-PLAAKTIG 391 (583)
Q Consensus 319 ~IlvTtR~~~v~-~~-~~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~Gl-PLai~~~~ 391 (583)
.||.||..+... .. ... ...+.+...+.++-..+|...+....... .......|++.+.|. +-.|..+.
T Consensus 273 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l----~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL----TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC----CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC----CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 566666544221 11 112 34677888888888888888763221111 133456788888884 44555443
No 52
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.00 E-value=1e-05 Score=75.07 Aligned_cols=125 Identities=18% Similarity=0.196 Sum_probs=63.9
Q ss_pred ceeech----hHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHH
Q 036323 181 EVRGRD----EEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVA 256 (583)
Q Consensus 181 ~~vGR~----~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 256 (583)
+|++.+ ..++.+.+++.... .......+.|+|++|+|||+||+.+++.. ......++++++. .+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~G~~GtGKT~la~~i~~~~--~~~~~~~~~~~~~------~~~ 94 (202)
T 2w58_A 26 DVDLNDDGRIKAIRFAERFVAEYE---PGKKMKGLYLHGSFGVGKTYLLAAIANEL--AKRNVSSLIVYVP------ELF 94 (202)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHCC---SSCCCCEEEEECSTTSSHHHHHHHHHHHH--HTTTCCEEEEEHH------HHH
T ss_pred hccCCChhHHHHHHHHHHHHHHhh---hccCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEhH------HHH
Confidence 455443 34455666665432 11122678899999999999999998742 2223345566543 333
Q ss_pred HHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHh--hHH-hhccC-CCCceEEEecCc
Q 036323 257 KATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEP--FRN-CLMNG-LRGSKILITTRK 326 (583)
Q Consensus 257 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~IlvTtR~ 326 (583)
..+...... .........+. +.-+|||||++......|.. +.. .+... ..+..+|+||..
T Consensus 95 ~~~~~~~~~-----~~~~~~~~~~~-----~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 95 RELKHSLQD-----QTMNEKLDYIK-----KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHHHHC--------CCCHHHHHHHH-----HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHhcc-----chHHHHHHHhc-----CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 333322211 11222333332 22499999996543334322 322 22221 235578888774
No 53
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.99 E-value=3.6e-06 Score=73.59 Aligned_cols=110 Identities=5% Similarity=0.011 Sum_probs=62.7
Q ss_pred ceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHH
Q 036323 181 EVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATI 260 (583)
Q Consensus 181 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 260 (583)
.++|++..++++.+.+.... ....-|.|+|.+|+|||++|+.+++... -++.+.-. . +....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~-----~~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~-~---~~~~~- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA-----KRTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARV-E---YLIDM- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH-----TCSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSST-T---HHHHC-
T ss_pred CceeCCHHHHHHHHHHHHHh-----CCCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechh-h---CChHh-
Confidence 57899999988888875422 1123477999999999999999987422 12222211 1 11000
Q ss_pred HHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccC-CCCceEEEecCc
Q 036323 261 EELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNG-LRGSKILITTRK 326 (583)
Q Consensus 261 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~IlvTtR~ 326 (583)
...+.+. .+.-.|+||++..........+...+... ..+.++|+||..
T Consensus 67 ----------------~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 ----------------PMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ----------------HHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ----------------hhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 1111111 23457899999765544555565555442 345678877763
No 54
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.96 E-value=9e-05 Score=78.30 Aligned_cols=179 Identities=12% Similarity=0.070 Sum_probs=97.3
Q ss_pred CceeechhHHHHHHHHhhcCCCC------CCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSD------QQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEF 253 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (583)
..++|.+..+++|.+++...... .+....+-|.|+|++|+|||+||+.+++. .... .+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~---fv~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAF---FFLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSE---EEEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCC---EEEEEch------
Confidence 46899999999998887532000 00123456889999999999999999873 2222 2233321
Q ss_pred HHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccc-----------cchHhhHHhhcc--CCCCceE
Q 036323 254 NVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDY-----------RKWEPFRNCLMN--GLRGSKI 320 (583)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~--~~~gs~I 320 (583)
.+...+. ......+...+.....+++.+|+||+++.-.. .....|...+.. ...+..|
T Consensus 273 ----~l~~~~~-----g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 ----EIMSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp ----HHHTSCT-----THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred ----Hhhhhhc-----chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 1111100 01111222333334456788999999932110 112334444432 2334556
Q ss_pred EEecCchHH-Hhhh----cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCC
Q 036323 321 LITTRKETV-ARMM----ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGL 383 (583)
Q Consensus 321 lvTtR~~~v-~~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~Gl 383 (583)
|.||..... ...+ .....+.+...+.++-.+++...+..... .....+ .++++.+.|.
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~l----~~la~~t~g~ 406 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVDL----EQVANETHGH 406 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCCH----HHHHHTCTTC
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhhH----HHHHHHccCC
Confidence 666665422 2222 11346889999999999999887632211 111122 4466677664
No 55
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.96 E-value=4.2e-05 Score=76.03 Aligned_cols=137 Identities=16% Similarity=0.254 Sum_probs=72.7
Q ss_pred ceeechhHHHHHHHHhhcCCC--CCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHH
Q 036323 181 EVRGRDEEMRSIKSMLLCQGS--DQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKA 258 (583)
Q Consensus 181 ~~vGR~~e~~~l~~~L~~~~~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 258 (583)
.++|.+..++.+...+..... .........+.|+|++|+|||++|+.+++. ....-...+.++++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccccccc-cHHH
Confidence 478999888888887754310 001123458899999999999999999873 21111223445554332221 1111
Q ss_pred HHHHhhcCcc--ccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCC-----------CCceEEEecC
Q 036323 259 TIEELEGSAI--DLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL-----------RGSKILITTR 325 (583)
Q Consensus 259 il~~l~~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTtR 325 (583)
+ ++.... .......+...+. ....-+|+||++..........|...+.... .++.+|+||.
T Consensus 95 l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 95 L---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp H---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred h---cCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 1 111110 0000011222222 2334699999997655555566666553321 2344777776
Q ss_pred c
Q 036323 326 K 326 (583)
Q Consensus 326 ~ 326 (583)
.
T Consensus 169 ~ 169 (311)
T 4fcw_A 169 L 169 (311)
T ss_dssp T
T ss_pred c
Confidence 5
No 56
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.93 E-value=2.6e-05 Score=75.75 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=34.0
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..++|.+..+.++.+.+.... .....|.|+|.+|+|||+||+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~-----~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLA-----PLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHT-----TSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHh-----CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 458999999988887765422 12346779999999999999999874
No 57
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.92 E-value=1.5e-05 Score=84.08 Aligned_cols=147 Identities=14% Similarity=0.151 Sum_probs=77.8
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcc---ccccCce--EEEEEeCCCCChHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDND---VINNFEI--RVRVCVSDPFDEFN 254 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~f~~--~~wv~~~~~~~~~~ 254 (583)
..++||+.+++.+...|.... ..-+.|+|++|+|||+||+.+++... +...... .+.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~-------~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT-------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS-------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------
T ss_pred CCccCcHHHHHHHHHHHhccC-------CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-------
Confidence 469999999999999996532 23457999999999999999887311 0001111 1122222
Q ss_pred HHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchHHH----
Q 036323 255 VAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKETVA---- 330 (583)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~---- 330 (583)
....+. .......+...+ -..++.+|++|.- .+....|...+.. ...++|.+|......
T Consensus 246 ------~~~~g~--~e~~~~~~~~~~---~~~~~~iLfiD~~----~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~ 308 (468)
T 3pxg_A 246 ------TKYRGE--FEDRLKKVMDEI---RQAGNIILFIDAA----IDASNILKPSLAR--GELQCIGATTLDEYRKYIE 308 (468)
T ss_dssp ---------------CTTHHHHHHHH---HTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHT
T ss_pred ------ccccch--HHHHHHHHHHHH---HhcCCeEEEEeCc----hhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhh
Confidence 000000 011122222222 2356789999921 1122223332322 234555555543311
Q ss_pred --h-hhcCCCeEEcCCCChHHHHHHHHHHh
Q 036323 331 --R-MMESTDIVYVQGLSELECWSLFRRFA 357 (583)
Q Consensus 331 --~-~~~~~~~~~l~~L~~~ea~~Lf~~~a 357 (583)
. .......+.+.+++.++..+++....
T Consensus 309 ~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1 11224579999999999999998764
No 58
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.86 E-value=6.6e-05 Score=74.43 Aligned_cols=52 Identities=23% Similarity=0.292 Sum_probs=37.3
Q ss_pred CceeechhHHHHHHHHhhcC--CCCC-----CCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 180 SEVRGRDEEMRSIKSMLLCQ--GSDQ-----QTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~--~~~~-----~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..++|++..++.+...+... .... .......+.|+|++|+|||+||+.+++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999998877541 0000 0012456789999999999999999873
No 59
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.82 E-value=8.7e-05 Score=78.06 Aligned_cols=98 Identities=10% Similarity=0.027 Sum_probs=60.0
Q ss_pred eeEEEcCCCcccccchHhhHHhhccCCCCceEEEe---------cC----chHHH-hhhcCCCeEEcCCCChHHHHHHHH
Q 036323 289 FFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILIT---------TR----KETVA-RMMESTDIVYVQGLSELECWSLFR 354 (583)
Q Consensus 289 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvT---------tR----~~~v~-~~~~~~~~~~l~~L~~~ea~~Lf~ 354 (583)
-++++|+++.-+.+.++.|...+.......-|+.| |. ...+. ........+.+.+++.++..+++.
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 39999999776666777777777554444323345 32 11111 111224557999999999999998
Q ss_pred HHhccCCCCCCCchHHHHHHHHhhhC-CCCccchhhh
Q 036323 355 RFALSGRTPSECDQLEGIGRGIVRKC-KGLPLAAKTI 390 (583)
Q Consensus 355 ~~a~~~~~~~~~~~~~~~~~~I~~~c-~GlPLai~~~ 390 (583)
..+...... -..+....|++.+ .|.|..+..+
T Consensus 377 ~~~~~~~~~----~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 377 IRAQTEGIN----ISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHTCC----BCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHhCCC----CCHHHHHHHHHHccCCCHHHHHHH
Confidence 775322111 1144566788888 7877755444
No 60
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.00042 Score=70.52 Aligned_cols=180 Identities=16% Similarity=0.132 Sum_probs=96.7
Q ss_pred cCCceeechhHHHHHHHHhhcCCC------CCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCC
Q 036323 178 DVSEVRGRDEEMRSIKSMLLCQGS------DQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFD 251 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 251 (583)
.-.++.|-++.+++|.+.+.-+-. ..+-..++-|.++|++|+|||.||+.+++. ....| +.+..+.-.+
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~s 220 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQ 220 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSC
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhc
Confidence 345788999888888776542100 001134567889999999999999999984 22222 2333332111
Q ss_pred hHHHHHHHHHHhhcCccccccHHHHHHHHH-HHhcCCceeEEEcCCCccc--------c--c----chHhhHHhhcc--C
Q 036323 252 EFNVAKATIEELEGSAIDLHELNSLLRRIG-ANIAGQKFFMVLDNLWTDD--------Y--R----KWEPFRNCLMN--G 314 (583)
Q Consensus 252 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~--------~--~----~~~~l~~~l~~--~ 314 (583)
. -..+.+..++.+. ..-...+++|+||+++.-. . . ....++..+.. .
T Consensus 221 --------------k--~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 221 --------------K--YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp --------------S--STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred --------------c--ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 0 0011111122222 2224578999999985411 0 0 11223333322 2
Q ss_pred CCCceEEEecCchHHH-hh-h---cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCC
Q 036323 315 LRGSKILITTRKETVA-RM-M---ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGL 383 (583)
Q Consensus 315 ~~gs~IlvTtR~~~v~-~~-~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~Gl 383 (583)
..+..||.||..+... .. + .-...++++..+.++-.++|+.+.-.-.. ...-++ ..|++.|.|.
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvdl----~~lA~~t~G~ 353 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGINL----RKVAEKMNGC 353 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCCH----HHHHHHCCSC
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCCH----HHHHHHCCCC
Confidence 3345566677654321 11 1 22578899988888888888876532211 111223 4577777774
No 61
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.79 E-value=4e-05 Score=76.06 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=36.8
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..++|+...+.++.+.+.... .....|.|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a-----~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA-----PSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC-----STTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh-----CCCCcEEEECCCCchHHHHHHHHHHh
Confidence 358999999999888876532 12345779999999999999999873
No 62
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.00039 Score=71.83 Aligned_cols=181 Identities=15% Similarity=0.176 Sum_probs=96.4
Q ss_pred ccCCceeechhHHHHHHHHhhcCCC------CCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCC
Q 036323 177 IDVSEVRGRDEEMRSIKSMLLCQGS------DQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPF 250 (583)
Q Consensus 177 ~~~~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 250 (583)
+.-..+.|-++.+++|.+.+..+-. ..+-..++-|.++|++|+|||.||+.+++. ....| +.++.+.-.
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~ 252 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIV 252 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTC
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhc
Confidence 3345788999888888776642100 001234577889999999999999999984 22222 233333221
Q ss_pred ChHHHHHHHHHHhhcCccccccHHHHHHHH-HHHhcCCceeEEEcCCCccc------cc--------chHhhHHhhcc--
Q 036323 251 DEFNVAKATIEELEGSAIDLHELNSLLRRI-GANIAGQKFFMVLDNLWTDD------YR--------KWEPFRNCLMN-- 313 (583)
Q Consensus 251 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~~------~~--------~~~~l~~~l~~-- 313 (583)
+ .. ....+.....+ ...-...+++|++|+++.-. .. ....++..+..
T Consensus 253 s--------------k~--~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 253 D--------------KY--IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp C--------------SS--SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred c--------------cc--chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 1 00 01111122222 22224678999999995310 00 11223333322
Q ss_pred CCCCceEEEecCchHHHh-hh-cC---CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCC
Q 036323 314 GLRGSKILITTRKETVAR-MM-ES---TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGL 383 (583)
Q Consensus 314 ~~~gs~IlvTtR~~~v~~-~~-~~---~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~Gl 383 (583)
...+..||.||..+.... .+ .. ...++++..+.++-.++|+.+...-.. ...-++ ..|++.+.|.
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~dl----~~lA~~t~G~ 386 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFDF----EAAVKMSDGF 386 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCCH----HHHHHTCCSC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccCH----HHHHHhCCCC
Confidence 233456777776543321 11 11 346778877888878888776532221 111222 4577788774
No 63
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.00044 Score=71.28 Aligned_cols=55 Identities=20% Similarity=0.244 Sum_probs=39.1
Q ss_pred ccCCceeechhHHHHHHHHhhcCCC------CCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 177 IDVSEVRGRDEEMRSIKSMLLCQGS------DQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 177 ~~~~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
+.-.++.|-++.+++|.+.+..+-. ..+-..++-|.++|++|+|||+||+.+++.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3445788999988888776642100 001234567889999999999999999984
No 64
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.75 E-value=4e-05 Score=86.08 Aligned_cols=157 Identities=17% Similarity=0.259 Sum_probs=88.7
Q ss_pred CceeechhHHHHHHHHhhcCCCCC--CCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQ--QTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAK 257 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~--~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (583)
..++|.+..++.+...+....... .......+.++|++|+|||+||+.+++.. ...-...+.++++.........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l--~~~~~~~i~i~~s~~~~~~~~~- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI--FGDEESMIRIDMSEYMEKHSTS- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH--HSCTTCEEEEEGGGGCSSCCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCcceEEEechhcccccccc-
Confidence 468999999988888876432110 11233478999999999999999998732 1111233455554322110000
Q ss_pred HHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccC-----------CCCceEEEecCc
Q 036323 258 ATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNG-----------LRGSKILITTRK 326 (583)
Q Consensus 258 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IlvTtR~ 326 (583)
...+...++ .....+|+||++..........|...+..+ ..+..||+||..
T Consensus 568 ---------------~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 568 ---------------GGQLTEKVR---RKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ------------------CHHHHH---HCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ---------------cchhhHHHH---hCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 011111221 123459999999766555566666665432 235678888873
Q ss_pred h-----HH----Hhhh-----cC-CCeEEcCCCChHHHHHHHHHHh
Q 036323 327 E-----TV----ARMM-----ES-TDIVYVQGLSELECWSLFRRFA 357 (583)
Q Consensus 327 ~-----~v----~~~~-----~~-~~~~~l~~L~~~ea~~Lf~~~a 357 (583)
. .+ ...+ .. ...+.+.+|+.++-..++....
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 1 11 1111 11 3578899999988887776654
No 65
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.74 E-value=0.00026 Score=68.20 Aligned_cols=187 Identities=13% Similarity=0.068 Sum_probs=92.5
Q ss_pred cCCceeechhHHHHHHHHhh---cCCC--CCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCCh
Q 036323 178 DVSEVRGRDEEMRSIKSMLL---CQGS--DQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDE 252 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~---~~~~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 252 (583)
.-.+++|.+..++++.+.+. .... .......+-+.|+|++|+||||||+.+++.. ...| +.++.+.-...
T Consensus 10 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~--~~~~---~~i~~~~~~~~ 84 (257)
T 1lv7_A 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSDFVEM 84 (257)
T ss_dssp CGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH--TCCE---EEECSCSSTTS
T ss_pred CHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc--CCCE---EEEeHHHHHHH
Confidence 34578999888777765542 1100 0001123358899999999999999998732 2122 33332211100
Q ss_pred HHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccc--------------cchHhhHHhhcc--CCC
Q 036323 253 FNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDY--------------RKWEPFRNCLMN--GLR 316 (583)
Q Consensus 253 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~ 316 (583)
.. ......+...+.......+.++++|+++.-.. .....+...+.. ...
T Consensus 85 ----------~~-----~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 85 ----------FV-----GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp ----------CC-----CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred ----------hh-----hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 00 00111222223333345678999999832111 011222222221 233
Q ss_pred CceEEEecCchH-HHhhh-c---CCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCC-Cccchhh
Q 036323 317 GSKILITTRKET-VARMM-E---STDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKG-LPLAAKT 389 (583)
Q Consensus 317 gs~IlvTtR~~~-v~~~~-~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~G-lPLai~~ 389 (583)
+..||.||.... +...+ . -...+.+...+.++-.+++......... ..... ...++..+.| .+--|..
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l-~~~~~----~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL-APDID----AAIIARGTPGFSGADLAN 223 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCCHHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCC-Ccccc----HHHHHHHcCCCCHHHHHH
Confidence 455666766543 21111 1 1346778888888888888776522111 11111 2346677777 5544443
No 66
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.73 E-value=2.3e-05 Score=68.87 Aligned_cols=87 Identities=14% Similarity=0.020 Sum_probs=49.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQ 287 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 287 (583)
...+.|+|..|+|||||++.+++..... .+ ..+++....-... . +..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~~~~~~-----------------------------~-~~~~ 83 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAASMPLT-----------------------------D-AAFE 83 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETTTSCCC-----------------------------G-GGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHHHhhHH-----------------------------H-HHhC
Confidence 4588999999999999999998742211 11 2455554432211 1 1234
Q ss_pred ceeEEEcCCCcccccchHhhHHhhcc-CCCCce-EEEecCc
Q 036323 288 KFFMVLDNLWTDDYRKWEPFRNCLMN-GLRGSK-ILITTRK 326 (583)
Q Consensus 288 ~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~-IlvTtR~ 326 (583)
.-+|||||+...+...-+.+...+.. ...|.. ||+||+.
T Consensus 84 ~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 66899999965333222333333321 122343 8888873
No 67
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.69 E-value=0.0002 Score=80.41 Aligned_cols=157 Identities=13% Similarity=0.105 Sum_probs=84.6
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCcc---ccc-cCceEEE-EEeCCCCChHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDND---VIN-NFEIRVR-VCVSDPFDEFN 254 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~-~f~~~~w-v~~~~~~~~~~ 254 (583)
..++||+.+++++.+.|.... ..-+.|+|.+|+|||++|+.+++... +.. .....+| ++.+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~-------~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l----- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR-------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL----- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS-------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-------
T ss_pred CCccCCHHHHHHHHHHHhccC-------CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH-----
Confidence 468999999999999996432 34567999999999999999876321 111 1122222 111110
Q ss_pred HHHHHHHHhhcCccccccHHHHHHHHHHHh-cCCceeEEEcCCCcccc-----cchHhhHHhhcc--CCCCceEEEecCc
Q 036323 255 VAKATIEELEGSAIDLHELNSLLRRIGANI-AGQKFFMVLDNLWTDDY-----RKWEPFRNCLMN--GLRGSKILITTRK 326 (583)
Q Consensus 255 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~-----~~~~~l~~~l~~--~~~gs~IlvTtR~ 326 (583)
+.+. ......+.....+.+.+ ..++.+|+||+++.-.. ..-......|.. ...+..+|.+|..
T Consensus 254 --------~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~at~~ 324 (758)
T 1r6b_X 254 --------LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTY 324 (758)
T ss_dssp ---------CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEEECH
T ss_pred --------hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEEeCc
Confidence 0000 11122222223333333 34578999999964200 001111222211 1234556666654
Q ss_pred hHHHhh-------hcCCCeEEcCCCChHHHHHHHHHHh
Q 036323 327 ETVARM-------MESTDIVYVQGLSELECWSLFRRFA 357 (583)
Q Consensus 327 ~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 357 (583)
...... ......+.+.+++.++..+++....
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 432211 1113468899999999988887654
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.63 E-value=5.9e-05 Score=84.71 Aligned_cols=149 Identities=13% Similarity=0.116 Sum_probs=78.8
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCc---cccccCceEEEEEeCCCCChHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDN---DVINNFEIRVRVCVSDPFDEFNVA 256 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~~f~~~~wv~~~~~~~~~~~~ 256 (583)
..++||+.+++++...|.... ..-+.|+|++|+|||++|+.+++.. .+.......-++.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~-------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~-------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT-------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM-------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS-------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------
T ss_pred CCccCchHHHHHHHHHHhCCC-------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--------
Confidence 469999999999999996533 2346799999999999999987631 0111111111111110
Q ss_pred HHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchHHHh-----
Q 036323 257 KATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKETVAR----- 331 (583)
Q Consensus 257 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~----- 331 (583)
.....+ .-......+.. .....++.+|++|.- . .....+...+. ....++|.||.......
T Consensus 245 ---g~~~~G--~~e~~l~~~~~---~~~~~~~~iLfiD~~--~--~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 245 ---GTKYRG--EFEDRLKKVMD---EIRQAGNIILFIDAA--I--DASNILKPSLA--RGELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp -------------CTTHHHHHH---HHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTTC
T ss_pred ---cccccc--hHHHHHHHHHH---HHHhcCCEEEEEcCc--h--hHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhcc
Confidence 000000 00112222222 223467889999921 1 12222322222 22355666665433111
Q ss_pred -h-hcCCCeEEcCCCChHHHHHHHHHHh
Q 036323 332 -M-MESTDIVYVQGLSELECWSLFRRFA 357 (583)
Q Consensus 332 -~-~~~~~~~~l~~L~~~ea~~Lf~~~a 357 (583)
. ......+.+.+++.++..+++....
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 0 1123578999999999999998654
No 69
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.61 E-value=0.00056 Score=71.67 Aligned_cols=181 Identities=14% Similarity=0.134 Sum_probs=95.6
Q ss_pred CCceeechhHHHHHHHHhhcCCCC-----CCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChH
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSD-----QQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEF 253 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~-----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (583)
-.+++|.++.++++.+.+..-... -+...++-|.|+|++|+|||+||+.+++.. ...| +.++.+.-....
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~--~~~f---~~is~~~~~~~~ 89 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA--NVPF---FHISGSDFVELF 89 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH--TCCE---EEEEGGGTTTCC
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc--CCCe---eeCCHHHHHHHH
Confidence 456899988777776654321000 001123347899999999999999998732 2222 233333221100
Q ss_pred HHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccc--------------cchHhhHHhhcc--CCCC
Q 036323 254 NVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDY--------------RKWEPFRNCLMN--GLRG 317 (583)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~~~g 317 (583)
. . .........+.......+.+|+||++..-.. .....+...+.. ...+
T Consensus 90 ----------~----g-~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 90 ----------V----G-VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp ----------T----T-HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred ----------h----c-ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0 0 0111122233334456789999999954211 012233333321 1235
Q ss_pred ceEEEecCchHHHh-h-hcC---CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCc
Q 036323 318 SKILITTRKETVAR-M-MES---TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLP 384 (583)
Q Consensus 318 s~IlvTtR~~~v~~-~-~~~---~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 384 (583)
..||.||....... . ... ...+.+++.+.++-.+++..++..... ..... ...|++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCc
Confidence 56777776654322 1 121 337888888888888888776532211 11111 344788888877
No 70
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.55 E-value=0.00072 Score=69.77 Aligned_cols=178 Identities=16% Similarity=0.120 Sum_probs=93.7
Q ss_pred CceeechhHHHHHHHHhhcC----CC--CCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQ----GS--DQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEF 253 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~----~~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~ 253 (583)
..+.|-++.+++|.+.+..+ .- .-+-..++-|.++|++|+|||.||+.+++. ....| +.+..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHHhhc--
Confidence 46889998888887764310 00 001134677889999999999999999984 22222 2333322110
Q ss_pred HHHHHHHHHhhcCccccccHHHHHHH-HHHHhcCCceeEEEcCCCccc------cc--------chHhhHHhhcc--CCC
Q 036323 254 NVAKATIEELEGSAIDLHELNSLLRR-IGANIAGQKFFMVLDNLWTDD------YR--------KWEPFRNCLMN--GLR 316 (583)
Q Consensus 254 ~~~~~il~~l~~~~~~~~~~~~~~~~-l~~~l~~k~~LlVlDdv~~~~------~~--------~~~~l~~~l~~--~~~ 316 (583)
.. ....+...+. ....-...+++|++|++..-. .. ....++..+.. ...
T Consensus 282 ------------k~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 282 ------------KY--VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp ------------CS--SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred ------------cc--CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 00 0111111222 222224578999999985311 00 11122222222 233
Q ss_pred CceEEEecCchHHH-hh-h---cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCC
Q 036323 317 GSKILITTRKETVA-RM-M---ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGL 383 (583)
Q Consensus 317 gs~IlvTtR~~~v~-~~-~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~Gl 383 (583)
+..||.||...... .. + .-...++++..+.++-.++|+.+...-.. ...-++ ..|++.|.|.
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dvdl----~~LA~~T~Gf 414 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGIRW----ELISRLCPNS 414 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSCCH----HHHHHHCCSC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCCCH----HHHHHHCCCC
Confidence 44566677544321 11 1 12567888888888888888876532211 111222 4477778774
No 71
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.00037 Score=71.92 Aligned_cols=181 Identities=17% Similarity=0.125 Sum_probs=94.8
Q ss_pred ccCCceeechhHHHHHHHHhhcC----CC--CCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCC
Q 036323 177 IDVSEVRGRDEEMRSIKSMLLCQ----GS--DQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPF 250 (583)
Q Consensus 177 ~~~~~~vGR~~e~~~l~~~L~~~----~~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 250 (583)
..-..+.|-++.+++|.+.+..+ .- ..+-..++-|.++|++|+|||.||+.+++. ....| +.++.+.-.
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~ 252 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQLV 252 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGC
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhhh
Confidence 34467889999998888764321 00 001234677889999999999999999984 22222 233332211
Q ss_pred ChHHHHHHHHHHhhcCccccccHHHHHHHHHH-HhcCCceeEEEcCCCcc-------ccc---c----hHhhHHhhcc--
Q 036323 251 DEFNVAKATIEELEGSAIDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTD-------DYR---K----WEPFRNCLMN-- 313 (583)
Q Consensus 251 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~-------~~~---~----~~~l~~~l~~-- 313 (583)
+ .. ....+...+.+.. .-...+++|++|+++.- ... . ...++..+..
T Consensus 253 ~--------------~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 253 Q--------------MY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp S--------------SC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred h--------------cc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 0 00 0111112222221 22346899999998421 000 1 1123333322
Q ss_pred CCCCceEEEecCchHHHh-hh-c---CCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCC
Q 036323 314 GLRGSKILITTRKETVAR-MM-E---STDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGL 383 (583)
Q Consensus 314 ~~~gs~IlvTtR~~~v~~-~~-~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~Gl 383 (583)
...+..||.||..+.... .+ . -...++++..+.++-.++|+.+.-.-.. ...-++ ..|++.+.|.
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDINW----QELARSTDEF 386 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCCH----HHHHHHCSSC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCCH----HHHHHhCCCC
Confidence 223445666776543321 11 1 1456888888888888888766532211 111122 4577777764
No 72
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.00069 Score=69.21 Aligned_cols=180 Identities=17% Similarity=0.147 Sum_probs=93.8
Q ss_pred cCCceeechhHHHHHHHHhhcCCC------CCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCC
Q 036323 178 DVSEVRGRDEEMRSIKSMLLCQGS------DQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFD 251 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 251 (583)
.-.++.|-++.+++|.+.+..+-. ..+-..++-|.++|++|+|||.||+.+++. ....| +.++.+.-.+
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l~s 254 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSELIQ 254 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGGCC
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHhhh
Confidence 335678899888888776532100 001234567889999999999999999984 22222 2233221110
Q ss_pred hHHHHHHHHHHhhcCccccccHHHHHHHHHH-HhcCCceeEEEcCCCccc------c----c----chHhhHHhhcc--C
Q 036323 252 EFNVAKATIEELEGSAIDLHELNSLLRRIGA-NIAGQKFFMVLDNLWTDD------Y----R----KWEPFRNCLMN--G 314 (583)
Q Consensus 252 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~------~----~----~~~~l~~~l~~--~ 314 (583)
. -..+.+...+.+.. .-...+++|++|+++.-. . . ....++..+.. .
T Consensus 255 --------------k--~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 255 --------------K--YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp --------------S--SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred --------------c--cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 0 01111222222222 224568999999985310 0 0 11223322322 2
Q ss_pred CCCceEEEecCchHHHh-hh-cC---CCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCC
Q 036323 315 LRGSKILITTRKETVAR-MM-ES---TDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGL 383 (583)
Q Consensus 315 ~~gs~IlvTtR~~~v~~-~~-~~---~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~Gl 383 (583)
..+..||.||....... .+ .+ ...++++..+.++-.++|..+.-.-. ....-++ ..|++.+.|.
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCCH----HHHHHHCCSC
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCCH----HHHHHhCCCC
Confidence 33456666776544322 11 11 34577887788888888877653221 1111223 4467777764
No 73
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.40 E-value=6.3e-05 Score=73.04 Aligned_cols=54 Identities=19% Similarity=0.267 Sum_probs=36.1
Q ss_pred cCCceeechhHHHHHHHHhhcCCCCC-----CCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 178 DVSEVRGRDEEMRSIKSMLLCQGSDQ-----QTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~~~~~~~-----~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.-..++|.+..++.|.+.+..-..+. .....+-+.|+|++|+|||+||+.+++.
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 34578999988888877654100000 0011233779999999999999999874
No 74
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.39 E-value=0.0021 Score=63.22 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.7
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..++.+.++|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44568889999999999999999984
No 75
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.33 E-value=0.00038 Score=69.79 Aligned_cols=151 Identities=11% Similarity=0.096 Sum_probs=83.4
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKAT 259 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 259 (583)
..++|++..++.+...+... .-+.++|++|+|||+||+.+.+. ....| ..+.+.......++....
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~---------~~vll~G~pGtGKT~la~~la~~--~~~~~---~~i~~~~~~~~~~l~g~~ 92 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG---------GHILLEGVPGLAKTLSVNTLAKT--MDLDF---HRIQFTPDLLPSDLIGTM 92 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT---------CCEEEESCCCHHHHHHHHHHHHH--TTCCE---EEEECCTTCCHHHHHEEE
T ss_pred cceeCcHHHHHHHHHHHHcC---------CeEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEecCCCCChhhcCCce
Confidence 35789999999998888643 25789999999999999999873 22222 223333332222211100
Q ss_pred HHHhhcCccccccHHHHHHHHHHHhcCC---ceeEEEcCCCcccccchHhhHHhhccC-----------CCCceEEEecC
Q 036323 260 IEELEGSAIDLHELNSLLRRIGANIAGQ---KFFMVLDNLWTDDYRKWEPFRNCLMNG-----------LRGSKILITTR 325 (583)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~l~~~l~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IlvTtR 325 (583)
......... .+... ..+|+||++..........+...+... .....|+.|+.
T Consensus 93 ---~~~~~~~~~-----------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~n 158 (331)
T 2r44_A 93 ---IYNQHKGNF-----------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQN 158 (331)
T ss_dssp ---EEETTTTEE-----------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEEC
T ss_pred ---eecCCCCce-----------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecC
Confidence 000000000 00111 259999999665544444455444321 23444555555
Q ss_pred chH------HHhh-hcCCC-eEEcCCCChHHHHHHHHHHhc
Q 036323 326 KET------VARM-MESTD-IVYVQGLSELECWSLFRRFAL 358 (583)
Q Consensus 326 ~~~------v~~~-~~~~~-~~~l~~L~~~ea~~Lf~~~a~ 358 (583)
... +... ..... .+.+.+++.++-.+++.....
T Consensus 159 p~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~ 199 (331)
T 2r44_A 159 PVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSN 199 (331)
T ss_dssp TTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHC
T ss_pred CCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccc
Confidence 221 1111 12223 588999999998888888763
No 76
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.33 E-value=0.00049 Score=77.27 Aligned_cols=134 Identities=16% Similarity=0.179 Sum_probs=72.2
Q ss_pred CceeechhHHHHHHHHhhcCCCC--CCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSD--QQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAK 257 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (583)
..++|.+..++.+...+...... ........+.++|++|+|||+||+.+.+.. . ...+.++++.......
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l--~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH--T---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh--c---CCEEEEechhhcchhh---
Confidence 45889999888888776532100 011234578999999999999999998732 1 2234455443321100
Q ss_pred HHHHHhhcCcccccc---HHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCC-----------CCceEEEe
Q 036323 258 ATIEELEGSAIDLHE---LNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL-----------RGSKILIT 323 (583)
Q Consensus 258 ~il~~l~~~~~~~~~---~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvT 323 (583)
...+.+.++.... ...+...++ .....+|+||++.......++.|...+..+. .+..||+|
T Consensus 530 --~~~l~g~~~g~~g~~~~~~l~~~~~---~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~t 604 (758)
T 1r6b_X 530 --VSRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_dssp --CSSSCCCCSCSHHHHHTTHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE
T ss_pred --HhhhcCCCCCCcCccccchHHHHHH---hCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEe
Confidence 0011111111100 011222222 2345799999997655555566666554321 24557777
Q ss_pred cCc
Q 036323 324 TRK 326 (583)
Q Consensus 324 tR~ 326 (583)
|..
T Consensus 605 sN~ 607 (758)
T 1r6b_X 605 TNA 607 (758)
T ss_dssp ECS
T ss_pred cCc
Confidence 754
No 77
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.29 E-value=0.0025 Score=70.82 Aligned_cols=181 Identities=10% Similarity=0.066 Sum_probs=95.8
Q ss_pred CCceeechhHHHHHHHHhhc----CCC--CCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCCh
Q 036323 179 VSEVRGRDEEMRSIKSMLLC----QGS--DQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDE 252 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~----~~~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 252 (583)
-..+.|-++.+++|.+++.- +.- .-+-..++-|.++|++|+|||+||+.+++.. ..+| +.++.+.
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el--g~~~---~~v~~~~---- 273 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAFF---FLINGPE---- 273 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT--TCEE---EEEEHHH----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCeE---EEEEhHH----
Confidence 34678888888888776532 110 0012346778999999999999999999853 2222 2333211
Q ss_pred HHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCccc------ccc-----hHhhHHhhcc--CCCCce
Q 036323 253 FNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD------YRK-----WEPFRNCLMN--GLRGSK 319 (583)
Q Consensus 253 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------~~~-----~~~l~~~l~~--~~~gs~ 319 (583)
+.... .......+...........+.+|+||+++.-- ... ...+...+.. ...+..
T Consensus 274 ----------l~sk~-~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 274 ----------IMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ----------HHSSC-TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred ----------hhccc-chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 11110 01111222233333345678999999985311 011 1122222221 122344
Q ss_pred EEEecCchH-HHhhhc----CCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCc
Q 036323 320 ILITTRKET-VARMME----STDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLP 384 (583)
Q Consensus 320 IlvTtR~~~-v~~~~~----~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 384 (583)
||.||.... +-..+. -...+++...+.++-.++|..+..... .....+ ...|++++.|.-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~-~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE-ECTTCC----HHHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC-CCcccC----HHHHHHhcCCCC
Confidence 555665443 222221 145788888888888888877652211 112222 345777887754
No 78
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.25 E-value=0.00086 Score=62.61 Aligned_cols=86 Identities=16% Similarity=0.080 Sum_probs=52.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhc-----------C-ccccccHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEG-----------S-AIDLHELN 274 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~-----------~-~~~~~~~~ 274 (583)
...++.|+|.+|+|||||+..++. ..-..++|++.....+...+.. +....+. . .....+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 355899999999999999999886 1224578888766555544332 3322211 0 11112223
Q ss_pred HHHHHHHHHhcCCceeEEEcCCCc
Q 036323 275 SLLRRIGANIAGQKFFMVLDNLWT 298 (583)
Q Consensus 275 ~~~~~l~~~l~~k~~LlVlDdv~~ 298 (583)
.....++..+..++-+||||.+..
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~ 116 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITA 116 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHH
Confidence 344555555544577999999743
No 79
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.19 E-value=0.0009 Score=76.05 Aligned_cols=137 Identities=18% Similarity=0.255 Sum_probs=71.6
Q ss_pred CceeechhHHHHHHHHhhcCCCC--CCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSD--QQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAK 257 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~--~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 257 (583)
..++|.+..++.+...+...... ........+.|+|++|+|||+||+.+++... ..-...+.++++....... .
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~--~~~~~~i~i~~~~~~~~~~-~- 633 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYMEKHA-V- 633 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEEEECTTTCCSSGG-G-
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhccchhH-H-
Confidence 35799999998888877543100 0112345788999999999999999987321 1111233444443322110 0
Q ss_pred HHHHHhhcCcccc---ccHHHHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCC-----------CCceEEEe
Q 036323 258 ATIEELEGSAIDL---HELNSLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGL-----------RGSKILIT 323 (583)
Q Consensus 258 ~il~~l~~~~~~~---~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvT 323 (583)
..+.+.++.. .....+...+.. ...-+|+||++..........|...+..+. .++.||+|
T Consensus 634 ---s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~t 707 (854)
T 1qvr_A 634 ---SRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILT 707 (854)
T ss_dssp ---GGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEE
T ss_pred ---HHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEe
Confidence 1111111100 000112222221 234599999997655555666666664321 24457888
Q ss_pred cCc
Q 036323 324 TRK 326 (583)
Q Consensus 324 tR~ 326 (583)
|..
T Consensus 708 sn~ 710 (854)
T 1qvr_A 708 SNL 710 (854)
T ss_dssp CCT
T ss_pred cCc
Confidence 774
No 80
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.17 E-value=0.0003 Score=69.79 Aligned_cols=43 Identities=21% Similarity=0.210 Sum_probs=29.8
Q ss_pred chhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 185 RDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 185 R~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
+...++.+.+++.... ......+.|+|++|+|||+||..+++.
T Consensus 133 ~~~~~~~~~~~i~~~~----~~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYP----SAEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHHHHCS----CSSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc----ccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3344555556665432 112467889999999999999999884
No 81
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.08 E-value=0.0055 Score=58.63 Aligned_cols=160 Identities=11% Similarity=0.104 Sum_probs=77.8
Q ss_pred cCCceeechhHHHHHHHHhhcCCCC-----CCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCCh
Q 036323 178 DVSEVRGRDEEMRSIKSMLLCQGSD-----QQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDE 252 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~~~~~~-----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 252 (583)
.-.+++|.+..+.++.+....-... -.-.-.+-+.|+|++|+|||||++.++.... ...+.++..
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~----- 83 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS----- 83 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH-----
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHH-----
Confidence 3457889887666665543211000 0000112288999999999999999987422 122223211
Q ss_pred HHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCccc----------ccc----hHhhHHhhccCC--C
Q 036323 253 FNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDD----------YRK----WEPFRNCLMNGL--R 316 (583)
Q Consensus 253 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~----~~~l~~~l~~~~--~ 316 (583)
.+ .... .. .....+...++..-...+.++++|++..-. ... ...+...+..+. .
T Consensus 84 -~~----~~~~----~~-~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~ 153 (254)
T 1ixz_A 84 -DF----VEMF----VG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 153 (254)
T ss_dssp -HH----HHSC----TT-HHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTC
T ss_pred -HH----HHHH----hh-HHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCC
Confidence 11 1000 00 000111112222222456899999993210 011 122333333222 2
Q ss_pred CceEEEecCchHHHh-hh----cCCCeEEcCCCChHHHHHHHHHHh
Q 036323 317 GSKILITTRKETVAR-MM----ESTDIVYVQGLSELECWSLFRRFA 357 (583)
Q Consensus 317 gs~IlvTtR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~a 357 (583)
...++.||..+.... .+ .-...+++...+.++-.+++...+
T Consensus 154 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 154 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp CEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 233445565554322 11 124568888888888888887665
No 82
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.08 E-value=0.00031 Score=69.04 Aligned_cols=69 Identities=19% Similarity=0.301 Sum_probs=44.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEe--CCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHh
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCV--SDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANI 284 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 284 (583)
..+++.|+|++|+|||+||.+++.. .-..++|+++ ....+.. ..+.+.....+.+.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~~----------------~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSGY----------------NTDFNVFVDDIARAM 180 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTTC----------------BCCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhhh----------------hcCHHHHHHHHHHHH
Confidence 3457789999999999999998873 1112456666 3221110 034455566666666
Q ss_pred cCCceeEEEcCCC
Q 036323 285 AGQKFFMVLDNLW 297 (583)
Q Consensus 285 ~~k~~LlVlDdv~ 297 (583)
...+ +||+|++.
T Consensus 181 ~~~~-LLVIDsI~ 192 (331)
T 2vhj_A 181 LQHR-VIVIDSLK 192 (331)
T ss_dssp HHCS-EEEEECCT
T ss_pred hhCC-EEEEeccc
Confidence 6556 99999984
No 83
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.07 E-value=0.00056 Score=73.39 Aligned_cols=165 Identities=16% Similarity=0.176 Sum_probs=77.6
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHH
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKAT 259 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 259 (583)
..++|-++-...+.+.+.-..-. ......++.|+|++|+||||||+.++... ...| .-+.++...+...+....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~-~~~~g~~vll~Gp~GtGKTtlar~ia~~l--~~~~---~~i~~~~~~~~~~~~g~~ 154 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLT-KSLKGPILCLAGPPGVGKTSLAKSIAKSL--GRKF---VRISLGGVRDESEIRGHR 154 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHS-SSCCSCEEEEESSSSSSHHHHHHHHHHHH--TCEE---EEECCCC-----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhc-ccCCCCEEEEECCCCCCHHHHHHHHHHhc--CCCe---EEEEecccchhhhhhhHH
Confidence 45788887777765543211000 11245689999999999999999998732 2222 222333221211111110
Q ss_pred HHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCccccc----chHhhHHhhccCC---------------CCceE
Q 036323 260 IEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDYR----KWEPFRNCLMNGL---------------RGSKI 320 (583)
Q Consensus 260 l~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~I 320 (583)
....+.. . ..+...+... ....-+|+||++...... ....+...+.... ....|
T Consensus 155 ~~~ig~~---~---~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~i 227 (543)
T 3m6a_A 155 RTYVGAM---P---GRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLF 227 (543)
T ss_dssp ---------------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEE
T ss_pred HHHhccC---c---hHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEE
Confidence 0111100 0 1111122222 223338889998653322 1233444332111 23456
Q ss_pred EEecCchHHH-hh-hcCCCeEEcCCCChHHHHHHHHHHh
Q 036323 321 LITTRKETVA-RM-MESTDIVYVQGLSELECWSLFRRFA 357 (583)
Q Consensus 321 lvTtR~~~v~-~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 357 (583)
|.||...... .. ......+.+.+++.++-..++..+.
T Consensus 228 I~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 228 IATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred EeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 6666643211 11 1113578999999999888887654
No 84
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.01 E-value=0.0045 Score=65.24 Aligned_cols=178 Identities=12% Similarity=0.085 Sum_probs=91.0
Q ss_pred cCCceeechhHHHHHHHHhh---cCCC--CCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCCh
Q 036323 178 DVSEVRGRDEEMRSIKSMLL---CQGS--DQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDE 252 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~---~~~~--~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~ 252 (583)
.-.+++|.+..+.++.+... .... .-.-.-.+-+.|+|++|+|||+||+.++... . ...+.++.+.-...
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~--~---~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--R---VPFITASGSDFVEM 103 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT--T---CCEEEEEGGGGTSS
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C---CCEEEEehhHHHHh
Confidence 44578999887766665542 1100 0000112238899999999999999998742 2 12233333221100
Q ss_pred HHHHHHHHHHhhcCccccccHHHHHHHHHHHhc----CCceeEEEcCCCccc----------ccc----hHhhHHhhccC
Q 036323 253 FNVAKATIEELEGSAIDLHELNSLLRRIGANIA----GQKFFMVLDNLWTDD----------YRK----WEPFRNCLMNG 314 (583)
Q Consensus 253 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~----~k~~LlVlDdv~~~~----------~~~----~~~l~~~l~~~ 314 (583)
. .......+...++ ..+.++++|++..-. ... ...+...+...
T Consensus 104 --------------~-----~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 104 --------------F-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp --------------C-----TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred --------------h-----hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 0 0001112222222 245899999994311 011 12233333322
Q ss_pred --CCCceEEEecCchHHHh-hh----cCCCeEEcCCCChHHHHHHHHHHhccCCCCCCCchHHHHHHHHhhhCCCCc
Q 036323 315 --LRGSKILITTRKETVAR-MM----ESTDIVYVQGLSELECWSLFRRFALSGRTPSECDQLEGIGRGIVRKCKGLP 384 (583)
Q Consensus 315 --~~gs~IlvTtR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~GlP 384 (583)
..+..++.||..+.... .+ .....+.++..+.++-.+++..++-... ...... ...|++.+.|+.
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~-l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-LAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSC-CCCSST----THHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCC-CChHHH----HHHHHHhcCCCC
Confidence 23345556666654422 11 1245788999998888888876652211 111111 234777777765
No 85
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.01 E-value=0.0016 Score=65.60 Aligned_cols=47 Identities=17% Similarity=0.198 Sum_probs=33.8
Q ss_pred cCCceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 178 DVSEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
+-..++|.+..++.+...+.... ..-+.|+|++|+|||+||+.+++.
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~-------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPG-------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGG-------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred CchhccChHHHHHHHHHHhhCCC-------CceEEEECCCCccHHHHHHHHHHh
Confidence 34568999886666554443221 223889999999999999999874
No 86
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.00 E-value=0.0025 Score=60.41 Aligned_cols=91 Identities=16% Similarity=0.099 Sum_probs=53.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccc----cCceEEEEEeCCCCChHHHHHHHHHHhhcCcc---------ccccH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVIN----NFEIRVRVCVSDPFDEFNVAKATIEELEGSAI---------DLHEL 273 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---------~~~~~ 273 (583)
...++.|+|++|+|||||+..++....... .-..++|++....++...+ ..++..++.... ...+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 345899999999999999998876311111 1356788887765554433 233444432210 11122
Q ss_pred H---HHHHHHHHHhc-CCceeEEEcCCCc
Q 036323 274 N---SLLRRIGANIA-GQKFFMVLDNLWT 298 (583)
Q Consensus 274 ~---~~~~~l~~~l~-~k~~LlVlDdv~~ 298 (583)
. .....+.+.+. .+.-+||||.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 2 23333444443 4677999999853
No 87
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.95 E-value=0.002 Score=72.37 Aligned_cols=160 Identities=13% Similarity=0.082 Sum_probs=84.8
Q ss_pred cCCceeechhHHHHHHHHhhcCCC------CCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCC
Q 036323 178 DVSEVRGRDEEMRSIKSMLLCQGS------DQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFD 251 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 251 (583)
.-..++|.+..+++|.+++...-. .-.-.....|.|+|++|+||||||+.+++. ....| +.++...
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~--- 273 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE--- 273 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH---
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH---
Confidence 345789999999999888753100 001133457899999999999999999874 22222 3333211
Q ss_pred hHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCceeEEEcCCCcccc-----------cchHhhHHhhcc--CCCCc
Q 036323 252 EFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQKFFMVLDNLWTDDY-----------RKWEPFRNCLMN--GLRGS 318 (583)
Q Consensus 252 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~--~~~gs 318 (583)
+..... ......+...+.......+.++++|++..... .....+...+.. ...+.
T Consensus 274 -----------l~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v 341 (806)
T 1ypw_A 274 -----------IMSKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp -----------HSSSST-THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCC
T ss_pred -----------hhhhhh-hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccE
Confidence 111100 00111122222333345678999999843110 011223333322 12344
Q ss_pred eEEEecCchH-HHhhhc---C-CCeEEcCCCChHHHHHHHHHHh
Q 036323 319 KILITTRKET-VARMME---S-TDIVYVQGLSELECWSLFRRFA 357 (583)
Q Consensus 319 ~IlvTtR~~~-v~~~~~---~-~~~~~l~~L~~~ea~~Lf~~~a 357 (583)
.+|.||.... +...+. . ...+.+...+.++-.+++...+
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 5555665532 211111 1 2456788888888888888765
No 88
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.94 E-value=0.0094 Score=59.84 Aligned_cols=157 Identities=9% Similarity=-0.083 Sum_probs=98.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHH-HhcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGA-NIAG 286 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~ 286 (583)
.++..++|..|.||++.+..+.+... ...|+....+.+....+..+ +.+.+.. -+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~---------------------l~~~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWNA---------------------IFSLCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHHH---------------------HHHHHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHHH---------------------HHHHhcCcCCcc
Confidence 56889999999999999988876321 12343211122222222222 2222211 1235
Q ss_pred CceeEEEcCCCc-ccccchHhhHHhhccCCCCceEEEecCc-------hHHHhhhc-CCCeEEcCCCChHHHHHHHHHHh
Q 036323 287 QKFFMVLDNLWT-DDYRKWEPFRNCLMNGLRGSKILITTRK-------ETVARMME-STDIVYVQGLSELECWSLFRRFA 357 (583)
Q Consensus 287 k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IlvTtR~-------~~v~~~~~-~~~~~~l~~L~~~ea~~Lf~~~a 357 (583)
++-++|+|+++. .+...++.|...+....+++.+|+++.. ..+...+. ....++..+++..+....+.+.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 677889999865 4445677788777665567777766543 23444333 35688999999999988888776
Q ss_pred ccCCCCCCCchHHHHHHHHhhhCCCCccchhhh
Q 036323 358 LSGRTPSECDQLEGIGRGIVRKCKGLPLAAKTI 390 (583)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~I~~~c~GlPLai~~~ 390 (583)
-..+..- ..+.+..|++.++|.+..+...
T Consensus 156 ~~~g~~i----~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 156 KQLNLEL----DDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHTTCEE----CHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHcCCCC----CHHHHHHHHHHhchHHHHHHHH
Confidence 4332211 2456778999999988877653
No 89
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.92 E-value=0.0052 Score=62.65 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+.++|++|+|||+||+.+++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999873
No 90
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.89 E-value=0.015 Score=56.37 Aligned_cols=157 Identities=11% Similarity=0.127 Sum_probs=78.9
Q ss_pred CCceeechhHHHHHHHHhhcCCCC-------CCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCC
Q 036323 179 VSEVRGRDEEMRSIKSMLLCQGSD-------QQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFD 251 (583)
Q Consensus 179 ~~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~ 251 (583)
-.++.|-++.+++|.+.+..+-.. .-..... +.|+|++|+||||||+.++..... ..+.+....-.+
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~ 82 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLN 82 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCS
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHh
Confidence 346778888777777654211000 0011122 899999999999999999873211 234444322111
Q ss_pred hHHHHHHHHHHhhcCccccccHHHHHHHHHHH-hcCCceeEEEcCCCcccc-----------cchHhhHHhhccC--CCC
Q 036323 252 EFNVAKATIEELEGSAIDLHELNSLLRRIGAN-IAGQKFFMVLDNLWTDDY-----------RKWEPFRNCLMNG--LRG 317 (583)
Q Consensus 252 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~~--~~g 317 (583)
.. ..........+.+. -...+.++++|++..... .....+...+..+ ...
T Consensus 83 ~~----------------~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~ 146 (274)
T 2x8a_A 83 MY----------------VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQ 146 (274)
T ss_dssp ST----------------THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTC
T ss_pred hh----------------hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCC
Confidence 00 00001111122221 134578999999853100 0112222333322 223
Q ss_pred ceEEEecCchHHHhh--h---cCCCeEEcCCCChHHHHHHHHHHh
Q 036323 318 SKILITTRKETVARM--M---ESTDIVYVQGLSELECWSLFRRFA 357 (583)
Q Consensus 318 s~IlvTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~a 357 (583)
..++.+|..+..... . .-...+.++..+.++-.++|+...
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 445556665544321 1 125677888888888888888765
No 91
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.88 E-value=0.0036 Score=60.89 Aligned_cols=55 Identities=22% Similarity=0.349 Sum_probs=34.8
Q ss_pred ccCCceeechhHHHHHHHHhhcCCCC-----CCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 177 IDVSEVRGRDEEMRSIKSMLLCQGSD-----QQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 177 ~~~~~~vGR~~e~~~l~~~L~~~~~~-----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
....+++|.+..+.++.+....-... -.-.-.+-+.|+|++|+|||||++.++..
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHH
Confidence 34557899887776666544211000 00001112889999999999999999874
No 92
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.72 E-value=0.0052 Score=57.64 Aligned_cols=115 Identities=11% Similarity=0.011 Sum_probs=60.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCcc-------------------
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAI------------------- 268 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~------------------- 268 (583)
..++.|+|.+|+|||||+..++.... ..-..++|+.... ....+...+ ..++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEE--SRDSIIRQA-KQFNWDFEEYIEKKLIIIDALMKEKED 97 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSS--CHHHHHHHH-HHTTCCCGGGBTTTEEEEECCC----C
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEccc--CHHHHHHHH-HHhcchHHHHhhCCEEEEeccccccCc
Confidence 45899999999999999999875321 1112355655433 333333332 23321110
Q ss_pred ----ccccHHHHHHHHHHHhc-CCce--eEEEcCCCcc---cccchHhhHHhhcc--CCCCceEEEecCch
Q 036323 269 ----DLHELNSLLRRIGANIA-GQKF--FMVLDNLWTD---DYRKWEPFRNCLMN--GLRGSKILITTRKE 327 (583)
Q Consensus 269 ----~~~~~~~~~~~l~~~l~-~k~~--LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~IlvTtR~~ 327 (583)
...+..++...+...+. .++- +||+|..... +......+...+.. ...|..||++|...
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 98 QWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 01134455555544442 2344 9999998531 22233334333322 23477888888754
No 93
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.70 E-value=0.0032 Score=57.25 Aligned_cols=113 Identities=21% Similarity=0.100 Sum_probs=60.8
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCC---CChHHHHHHHHHHhhc-----------Cccc----c
Q 036323 209 QIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDP---FDEFNVAKATIEELEG-----------SAID----L 270 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~---~~~~~~~~~il~~l~~-----------~~~~----~ 270 (583)
..|.|++-.|.||||+|-...-. ...+=-.+.++..... .....+ ++.+.. .... .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalR--A~g~G~rV~~vQF~Kg~~~~gE~~~----l~~L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAAR--AVGHGKNVGVVQFIKGTWPNGERNL----LEPHGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHH--HHHTTCCEEEEESSCCSSCCHHHHH----HGGGTCEEEECCTTCCCCGGGHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCCCCCccHHHH----HHhCCcEEEEcccccccCCCCcHHHH
Confidence 46667777789999999655442 2222223444433322 222233 333310 0000 1
Q ss_pred ccHHHHHHHHHHHhcCCce-eEEEcCCCc---ccccchHhhHHhhccCCCCceEEEecCch
Q 036323 271 HELNSLLRRIGANIAGQKF-FMVLDNLWT---DDYRKWEPFRNCLMNGLRGSKILITTRKE 327 (583)
Q Consensus 271 ~~~~~~~~~l~~~l~~k~~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~IlvTtR~~ 327 (583)
.........+++.+.+.+| |||||++-. -..-..+.+...+........||+|+|..
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 1123344445555555555 999999822 12234456666676666778899999985
No 94
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.69 E-value=0.005 Score=61.87 Aligned_cols=85 Identities=18% Similarity=0.150 Sum_probs=54.7
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCcc-----ccccHHHHHHHH
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAI-----DLHELNSLLRRI 280 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 280 (583)
+...++.|.|++|+|||||+..++... ...-..++|++....++.. .++.++.... ...+.++....+
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 345799999999999999999988632 2222346788877666543 3444543321 234455665555
Q ss_pred HHHhc-CCceeEEEcCCC
Q 036323 281 GANIA-GQKFFMVLDNLW 297 (583)
Q Consensus 281 ~~~l~-~k~~LlVlDdv~ 297 (583)
...+. .+.-++|+|.+.
T Consensus 132 ~~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHHTSCCSEEEEECTT
T ss_pred HHHhhhcCCCeEEehHhh
Confidence 55544 456699999973
No 95
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.63 E-value=0.0014 Score=61.39 Aligned_cols=114 Identities=14% Similarity=-0.024 Sum_probs=61.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCcc--ccccHHHHHHHHHHHh
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAI--DLHELNSLLRRIGANI 284 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l 284 (583)
...++.|+|..|+||||++..+... ...+-..++.+..... .. ....+++.++.... ......++...+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r--~~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR--LEYADVKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH--HHHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH--HHhcCCEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 3568899999999999999877663 2222222333332221 11 11123333332211 1223345555665555
Q ss_pred cCCc-eeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchH
Q 036323 285 AGQK-FFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKET 328 (583)
Q Consensus 285 ~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~ 328 (583)
.+.+ -+||+|.+..-+.+..+.+. .+.+ .|..||+|.+..+
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecccc
Confidence 4444 49999999543333333332 2333 2788999988543
No 96
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.53 E-value=0.0076 Score=58.97 Aligned_cols=81 Identities=11% Similarity=0.118 Sum_probs=53.1
Q ss_pred EEEEEecCCchHHHHHHHHHcCcccccc--CceEEEEEeCCCCChHHHHHHHHHHhhcCcc-----ccccHHHH-HHHHH
Q 036323 210 IISMVGMGGIGKTTLAQLAYNDNDVINN--FEIRVRVCVSDPFDEFNVAKATIEELEGSAI-----DLHELNSL-LRRIG 281 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~-~~~l~ 281 (583)
++.|.|++|+|||||+.+++.. .... -..++|++....++.. .+++++.... ...+.++. ...+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~--~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS--YMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH--HHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH--HHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 7899999999999999887763 2222 2467899888777653 2566665432 13345555 43333
Q ss_pred HH--h-cCCceeEEEcCCC
Q 036323 282 AN--I-AGQKFFMVLDNLW 297 (583)
Q Consensus 282 ~~--l-~~k~~LlVlDdv~ 297 (583)
.. + .++.-|||+|-+.
T Consensus 103 ~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHTCCTTCCEEEEEECST
T ss_pred HHHHhhccCceEEEEeccc
Confidence 22 2 4567899999984
No 97
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.48 E-value=0.017 Score=58.04 Aligned_cols=90 Identities=13% Similarity=0.129 Sum_probs=54.0
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccc----cCceEEEEEeCCCCChHHHHHHHHHHhhcCcc------------c
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVIN----NFEIRVRVCVSDPFDEFNVAKATIEELEGSAI------------D 269 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~------------~ 269 (583)
+...++.|+|.+|+|||+||..++....... .-..++|++....++...+. .++..++.... .
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~ 198 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYT 198 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCC
Confidence 4567999999999999999998876421211 22468899988776665544 33444433210 1
Q ss_pred cccHHHHHHHHHHHhc---CCceeEEEcCC
Q 036323 270 LHELNSLLRRIGANIA---GQKFFMVLDNL 296 (583)
Q Consensus 270 ~~~~~~~~~~l~~~l~---~k~~LlVlDdv 296 (583)
......+...+...+. .+.-+||+|.+
T Consensus 199 ~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl 228 (343)
T 1v5w_A 199 SEHQMELLDYVAAKFHEEAGIFKLLIIDSI 228 (343)
T ss_dssp TTHHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEech
Confidence 1122233333444443 45568888887
No 98
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.39 E-value=0.0088 Score=60.46 Aligned_cols=84 Identities=17% Similarity=0.067 Sum_probs=54.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCcc-----ccccHHHHHHHHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAI-----DLHELNSLLRRIG 281 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 281 (583)
...++.|.|.+|+||||||..++... ...-..++|++....++.. ....++.... ...+.+++...+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 34588899999999999998887632 2222368899988766543 2344443211 2234566666666
Q ss_pred HHhc-CCceeEEEcCCC
Q 036323 282 ANIA-GQKFFMVLDNLW 297 (583)
Q Consensus 282 ~~l~-~k~~LlVlDdv~ 297 (583)
...+ ...-+||+|.+.
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 5554 345699999983
No 99
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.37 E-value=0.01 Score=59.04 Aligned_cols=90 Identities=14% Similarity=0.138 Sum_probs=54.2
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccc---------cC-----ceEEEEEeCCCCChHHHHHHHHHHhhcCcc---
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVIN---------NF-----EIRVRVCVSDPFDEFNVAKATIEELEGSAI--- 268 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--- 268 (583)
+...++.|.|.+|+|||+||..++....... .. ..++|++....++...+.. ++..++....
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~ 174 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVL 174 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHh
Confidence 3457999999999999999988875321111 11 4678998888776665543 3444443211
Q ss_pred ------ccccHH---HHHHHHHHHhcC--CceeEEEcCC
Q 036323 269 ------DLHELN---SLLRRIGANIAG--QKFFMVLDNL 296 (583)
Q Consensus 269 ------~~~~~~---~~~~~l~~~l~~--k~~LlVlDdv 296 (583)
...+.+ .+...+...+.. +.-+||+|.+
T Consensus 175 ~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 175 DNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp HTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred cCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 112222 234445454443 4558888887
No 100
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.34 E-value=0.02 Score=51.51 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988763
No 101
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.33 E-value=0.014 Score=58.10 Aligned_cols=90 Identities=13% Similarity=0.093 Sum_probs=54.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCcccccc----CceEEEEEeCCCCChHHHHHHHHHHhhcCcc---------ccccH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINN----FEIRVRVCVSDPFDEFNVAKATIEELEGSAI---------DLHEL 273 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~---------~~~~~ 273 (583)
...++.|+|.+|+|||+||..++........ -..++|++....++...+. +++..++.... ...+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 3458999999999999999888764211110 2467899888776665544 33444443211 11122
Q ss_pred H---HHHHHHHHHhc--CCceeEEEcCCC
Q 036323 274 N---SLLRRIGANIA--GQKFFMVLDNLW 297 (583)
Q Consensus 274 ~---~~~~~l~~~l~--~k~~LlVlDdv~ 297 (583)
+ .+...+...+. .+.-+||+|.+.
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 2 33444544443 456688899873
No 102
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.26 E-value=0.0044 Score=57.03 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=33.8
Q ss_pred echhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHc
Q 036323 184 GRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 184 GR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.|++.++.|.+.+.... .....+|+|+|.+|+|||||++.+..
T Consensus 2 ~~~~~~~~l~~~~~~~~----~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK----TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CHHHHHHHHHHHHHTSC----CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc----cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35667788888886532 24567999999999999999998876
No 103
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.17 E-value=0.013 Score=58.90 Aligned_cols=84 Identities=18% Similarity=0.110 Sum_probs=53.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCcc-----ccccHHHHHHHHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAI-----DLHELNSLLRRIG 281 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 281 (583)
...++.|.|.+|+||||||.+++.. ....-..++|++....++.. ..+.++.... ...+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~--~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVAN--AQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH--HHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 4568999999999999999888753 22222457888887765543 2344443221 1234555555555
Q ss_pred HHhc-CCceeEEEcCCC
Q 036323 282 ANIA-GQKFFMVLDNLW 297 (583)
Q Consensus 282 ~~l~-~k~~LlVlDdv~ 297 (583)
.... .+.-+||+|.+.
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 4443 356799999984
No 104
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.05 E-value=0.036 Score=52.33 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|+|+.|+|||||.+.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999763
No 105
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.98 E-value=0.019 Score=56.23 Aligned_cols=25 Identities=20% Similarity=0.299 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+++|.|.+|+|||||+..++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3458999999999999999988763
No 106
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.98 E-value=0.081 Score=49.60 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|+|+.|+|||||.+.++.-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999863
No 107
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.97 E-value=0.02 Score=57.61 Aligned_cols=92 Identities=15% Similarity=0.104 Sum_probs=52.2
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccC----ceEEEEEeCCCCChHHHHHHHHHHhhcCcc------------c
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNF----EIRVRVCVSDPFDEFNVAKATIEELEGSAI------------D 269 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f----~~~~wv~~~~~~~~~~~~~~il~~l~~~~~------------~ 269 (583)
+...++.|+|++|+|||||+..++......... ..++|++....+.... +..+......... .
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCCCHHHHhhCEEEEecCC
Confidence 456799999999999999999987632111111 2348888766543332 2233333221110 0
Q ss_pred cccHHHHHHHHHHHhc------CCceeEEEcCCCc
Q 036323 270 LHELNSLLRRIGANIA------GQKFFMVLDNLWT 298 (583)
Q Consensus 270 ~~~~~~~~~~l~~~l~------~k~~LlVlDdv~~ 298 (583)
.....++...+...+. .++-+||+|.+-.
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta 242 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 242 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSST
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchH
Confidence 1112334444444443 4677999999843
No 108
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.97 E-value=0.016 Score=58.36 Aligned_cols=83 Identities=17% Similarity=0.105 Sum_probs=51.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCcc-----ccccHHHHHHHHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAI-----DLHELNSLLRRIG 281 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 281 (583)
..+++.|.|.+|+||||||.+++... ...-..++|++....++.. .+..++.... +..+.+++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 45689999999999999998887632 2222357889887766543 1344443221 1223445555444
Q ss_pred HHh-cCCceeEEEcCC
Q 036323 282 ANI-AGQKFFMVLDNL 296 (583)
Q Consensus 282 ~~l-~~k~~LlVlDdv 296 (583)
... ..+.-+||+|.+
T Consensus 135 ~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 135 ALARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHHTCCSEEEEECG
T ss_pred HHHhccCCCEEEEcCH
Confidence 433 245569999997
No 109
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.88 E-value=0.034 Score=52.92 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.++.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999865
No 110
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.88 E-value=0.019 Score=56.82 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=32.1
Q ss_pred eechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHc
Q 036323 183 RGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 183 vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
+|-...+..+...+.... ....+.+|+|.|..|+|||||++.+..
T Consensus 70 ~~~~~~l~~~~~~~l~~~---~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKP---EPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHTCC---CCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccC---CCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 444455555555554432 245678999999999999999988865
No 111
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.83 E-value=0.017 Score=56.65 Aligned_cols=24 Identities=29% Similarity=0.302 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+++|+|.+|+||||++..++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999988875
No 112
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.81 E-value=0.0067 Score=56.15 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=28.6
Q ss_pred HHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHc
Q 036323 188 EMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 188 e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
-+++|.+.+... .....+|+|+|+.|+|||||++.+..
T Consensus 7 ~~~~~~~~~~~~-----~~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 7 LCQGVLERLDPR-----QPGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp HHHHHHHHSCTT-----CCSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHHhc-----CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 445566665432 24567999999999999999998876
No 113
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.80 E-value=0.044 Score=51.97 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+++|+|+.|+|||||.+.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999999865
No 114
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.74 E-value=0.028 Score=53.09 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=27.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSD 248 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 248 (583)
..++.|.|.+|+|||||+..++... ...-..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 4589999999999999998776531 12223567776544
No 115
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.70 E-value=0.008 Score=63.39 Aligned_cols=42 Identities=19% Similarity=0.178 Sum_probs=35.6
Q ss_pred ceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 181 EVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 181 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.++|++..++.+...+.... -|.|+|++|+|||+||+.+++.
T Consensus 23 ~ivGq~~~i~~l~~al~~~~---------~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE---------SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC---------EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcCC---------eeEeecCchHHHHHHHHHHHHH
Confidence 47899999998888876432 6789999999999999999884
No 116
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.63 E-value=0.05 Score=50.67 Aligned_cols=45 Identities=22% Similarity=0.138 Sum_probs=30.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccc---cc-cCceEEEEEeCCCCC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDV---IN-NFEIRVRVCVSDPFD 251 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~-~f~~~~wv~~~~~~~ 251 (583)
...+++|+|++|+|||||++.++..... .. .-...+|+.......
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 4579999999999999999998752111 11 134577777655433
No 117
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=95.55 E-value=0.091 Score=50.36 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.++.
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 34899999999999999999975
No 118
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.51 E-value=0.063 Score=51.62 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999875
No 119
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.50 E-value=0.002 Score=58.47 Aligned_cols=22 Identities=23% Similarity=0.073 Sum_probs=18.6
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.++.|+|+.|+||||++..++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999966654
No 120
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.48 E-value=0.0061 Score=54.62 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 121
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.46 E-value=0.0079 Score=54.59 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+++|+|++|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999874
No 122
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.44 E-value=0.0063 Score=54.07 Aligned_cols=22 Identities=23% Similarity=0.134 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+|.|.|++|+||||+++.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 123
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.43 E-value=0.0067 Score=53.95 Aligned_cols=20 Identities=40% Similarity=0.717 Sum_probs=18.6
Q ss_pred EEEEEEecCCchHHHHHHHH
Q 036323 209 QIISMVGMGGIGKTTLAQLA 228 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v 228 (583)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999998
No 124
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.40 E-value=0.045 Score=53.73 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 45899999999999999999865
No 125
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.39 E-value=0.0076 Score=54.01 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.4
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999886
No 126
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.38 E-value=0.045 Score=55.91 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=36.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCcccc----ccCceEEEEEeCCCCChHHHHHHHHHHhh
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVI----NNFEIRVRVCVSDPFDEFNVAKATIEELE 264 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 264 (583)
...++.|+|.+|+|||||+..++-..... ..-..++|++....+....+ ..+.+.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 45699999999999999999765211111 12345888887765554433 33455544
No 127
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.38 E-value=0.085 Score=50.28 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|+|+.|+|||||.+.++.-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 348999999999999999999763
No 128
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.27 E-value=0.012 Score=59.64 Aligned_cols=51 Identities=20% Similarity=0.212 Sum_probs=35.7
Q ss_pred ceeechhHHHHHHHHhhcC-------CC-CCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 181 EVRGRDEEMRSIKSMLLCQ-------GS-DQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 181 ~~vGR~~e~~~l~~~L~~~-------~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.++|.+..++.+...+... .. .........+.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3689888888888777200 00 001123457889999999999999999874
No 129
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.24 E-value=0.012 Score=59.05 Aligned_cols=52 Identities=13% Similarity=-0.000 Sum_probs=32.3
Q ss_pred HHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccc-cccCceEEEEEeCCC
Q 036323 191 SIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDV-INNFEIRVRVCVSDP 249 (583)
Q Consensus 191 ~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~f~~~~wv~~~~~ 249 (583)
+.++.+..- .....++|+|.+|+|||||++.+.+.... ...+.+ +++-+.+.
T Consensus 163 raID~~~pi------~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER 215 (422)
T 3ice_A 163 RVLDLASPI------GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDER 215 (422)
T ss_dssp HHHHHHSCC------BTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSC
T ss_pred eeeeeeeee------cCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCC
Confidence 445555433 23558899999999999999988763211 112333 34556654
No 130
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.22 E-value=0.0081 Score=55.10 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+|.|+|++|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
No 131
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.15 E-value=0.011 Score=53.59 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+|.|.|++|+||||+++.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 132
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.12 E-value=0.011 Score=54.29 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+|+|+|++|+|||||++.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999998873
No 133
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.12 E-value=0.11 Score=51.19 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=37.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHh
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEEL 263 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 263 (583)
...++.|.|.+|+||||||..++.+....+ ..++|++.. .+...+...++...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~ 119 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 119 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHH
Confidence 346899999999999999988875422222 467777765 45666777766553
No 134
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.11 E-value=0.019 Score=56.02 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.4
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....+|.|.|++|+||||+|+.+..
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999876
No 135
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.09 E-value=0.01 Score=53.51 Aligned_cols=23 Identities=13% Similarity=0.417 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|++|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999876
No 136
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.08 E-value=0.056 Score=53.07 Aligned_cols=88 Identities=17% Similarity=0.188 Sum_probs=46.2
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCCh--HHHHHHHHHHhhcCc---cccccHHHH-HHH
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDE--FNVAKATIEELEGSA---IDLHELNSL-LRR 279 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~il~~l~~~~---~~~~~~~~~-~~~ 279 (583)
....++.|+|.+|+||||++..++... ...-..+.++... .+.. .+.+...++..+... ....+...+ ...
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l--~~~g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF--VDEGKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH--HHTTCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH--HhcCCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 456899999999999999998887632 2111224444432 2221 122233344433211 011122222 334
Q ss_pred HHHHhcCCceeEEEcCC
Q 036323 280 IGANIAGQKFFMVLDNL 296 (583)
Q Consensus 280 l~~~l~~k~~LlVlDdv 296 (583)
+...+....-++++|-.
T Consensus 179 l~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 179 VAHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHHTTCSEEEEEEC
T ss_pred HHHHHhcCCCEEEEECC
Confidence 44445555668888976
No 137
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.04 E-value=0.022 Score=55.61 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=22.4
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....+|+|+|..|+||||||+.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999988766
No 138
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.03 E-value=0.057 Score=54.24 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=32.1
Q ss_pred HHHHHhcCCceeEEEcCCCcc-cccchHhhHHhhcc--CCCCceEEEecCchHHHhh
Q 036323 279 RIGANIAGQKFFMVLDNLWTD-DYRKWEPFRNCLMN--GLRGSKILITTRKETVARM 332 (583)
Q Consensus 279 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~IlvTtR~~~v~~~ 332 (583)
.+...|..++=+|++|..-+. |...-..+...+.. ...|..||++|-+...+..
T Consensus 173 aIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~ 229 (366)
T 3tui_C 173 AIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKR 229 (366)
T ss_dssp HHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHH
T ss_pred HHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHH
Confidence 455556677889999987431 22222334443432 1237778888888766654
No 139
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.96 E-value=0.013 Score=53.15 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.+|.|.|++|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998873
No 140
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.96 E-value=0.011 Score=53.46 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45788999999999999999976
No 141
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.94 E-value=0.0095 Score=53.06 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+|+|+|++|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999886
No 142
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.92 E-value=0.067 Score=59.42 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=38.0
Q ss_pred cCCceeechhHHHHHHHHhhcCCCC------CCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 178 DVSEVRGRDEEMRSIKSMLLCQGSD------QQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 178 ~~~~~vGR~~e~~~l~~~L~~~~~~------~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.-..+.|-++.+++|.+.+..+-.. .+-...+-+.++|++|+|||.||+.+++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 3456778888888887766433200 01233456789999999999999999984
No 143
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.91 E-value=0.015 Score=51.99 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+++|+|++|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 144
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.87 E-value=0.012 Score=54.37 Aligned_cols=25 Identities=28% Similarity=0.539 Sum_probs=22.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+++|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3568999999999999999999874
No 145
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.87 E-value=0.027 Score=58.32 Aligned_cols=41 Identities=27% Similarity=0.228 Sum_probs=28.1
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPF 250 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 250 (583)
..++|+|.+|+|||||+..+..+.... .-...+++.+.+..
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGert 192 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERT 192 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCc
Confidence 358899999999999999888742211 22445666666543
No 146
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.86 E-value=0.023 Score=54.30 Aligned_cols=40 Identities=20% Similarity=0.222 Sum_probs=28.4
Q ss_pred HHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHc
Q 036323 189 MRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 189 ~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+.+...+.... .......+|.|+|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~~~~--~~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 15 LARNLRSLTRGK--KSSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHTTC--CCCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHccC--CcccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344444444432 1234567899999999999999999876
No 147
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.86 E-value=0.091 Score=52.52 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.++.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHT
T ss_pred CCEEEEECCCCccHHHHHHHHHc
Confidence 35899999999999999999975
No 148
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.84 E-value=0.012 Score=53.99 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+++|+|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 149
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.82 E-value=0.01 Score=54.50 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+|.|+|++|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 150
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.80 E-value=0.02 Score=52.73 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=22.8
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
....+|+|+|.+|+|||||++.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 44679999999999999999998873
No 151
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.79 E-value=0.027 Score=56.17 Aligned_cols=45 Identities=20% Similarity=0.203 Sum_probs=31.3
Q ss_pred eechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHc
Q 036323 183 RGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 183 vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
++-+.-.+++.+.+...- ..+....|.|+|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i---~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRI---EDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTT---TTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHh---ccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 334455666666664322 224466789999999999999998876
No 152
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.75 E-value=0.014 Score=53.45 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 45899999999999999999876
No 153
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.74 E-value=0.012 Score=52.43 Aligned_cols=24 Identities=25% Similarity=0.637 Sum_probs=20.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+++|+|+.|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 356899999999999999997543
No 154
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.74 E-value=0.017 Score=52.90 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.4
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....+|+|.|++|+||||+++.+.+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999876
No 155
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.74 E-value=0.017 Score=52.86 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=22.7
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....+|+|+|+.|+||||+++.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4577999999999999999999987
No 156
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.71 E-value=0.017 Score=53.27 Aligned_cols=24 Identities=38% Similarity=0.364 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+++|+|..|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998876
No 157
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=94.71 E-value=0.67 Score=58.25 Aligned_cols=139 Identities=13% Similarity=0.071 Sum_probs=71.5
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQK 288 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 288 (583)
+-|.++|++|+|||+||+.+.... ..+ ....++.+...+...+...+-..+.......... ..-.-.+++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~------~~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT------LLPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE------EEEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc------ccCCCCCce
Confidence 467799999999999997776532 222 3455677776666555444443332110000000 000003678
Q ss_pred eeEEEcCCCccccc------chHhhHHhhccCC-----C-------CceEEEecCchH------HH-hhhcCCCeEEcCC
Q 036323 289 FFMVLDNLWTDDYR------KWEPFRNCLMNGL-----R-------GSKILITTRKET------VA-RMMESTDIVYVQG 343 (583)
Q Consensus 289 ~LlVlDdv~~~~~~------~~~~l~~~l~~~~-----~-------gs~IlvTtR~~~------v~-~~~~~~~~~~l~~ 343 (583)
++|.+||+.-...+ ..+.++..+..++ . +..+|.++.... +. ........+.+..
T Consensus 1338 ~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~ 1417 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGY 1417 (2695)
T ss_dssp EEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCC
T ss_pred EEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCC
Confidence 89999997432222 2333444433211 1 233444443221 11 1112245677777
Q ss_pred CChHHHHHHHHHHh
Q 036323 344 LSELECWSLFRRFA 357 (583)
Q Consensus 344 L~~~ea~~Lf~~~a 357 (583)
.+.++-..+|....
T Consensus 1418 P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1418 PSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 77777777776654
No 158
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.70 E-value=0.015 Score=52.64 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+|.|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 159
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.67 E-value=0.07 Score=53.08 Aligned_cols=53 Identities=11% Similarity=0.030 Sum_probs=37.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhh
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELE 264 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~ 264 (583)
..++.|.|.+|+||||||..++.+... .=..++|++. ..+...+...++....
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDLT 98 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHhh
Confidence 458899999999999999888764222 2234666655 3466777777766544
No 160
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.64 E-value=0.015 Score=52.57 Aligned_cols=22 Identities=36% Similarity=0.703 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+|.|.|++|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 161
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.63 E-value=0.012 Score=52.81 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.++|.|+|++|+||||+++.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45788999999999999999876
No 162
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.63 E-value=0.012 Score=54.18 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+|.|+|++|+|||||++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4568899999999999999998763
No 163
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.61 E-value=0.015 Score=53.30 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|+|++|+|||||++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999998763
No 164
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.60 E-value=0.021 Score=51.56 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=22.5
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
....+|.|.|++|+||||+++.+...
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34678999999999999999998873
No 165
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.59 E-value=0.016 Score=52.63 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+|.|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 166
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.59 E-value=0.024 Score=53.81 Aligned_cols=24 Identities=21% Similarity=0.105 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....|.|.|++|+||||+|+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999999876
No 167
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.57 E-value=0.017 Score=52.09 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....|.|+|++|+||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 168
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.56 E-value=0.026 Score=56.74 Aligned_cols=112 Identities=11% Similarity=0.114 Sum_probs=58.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQ 287 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 287 (583)
..+++|+|+.|+|||||.+.+... ........+ +.+.++.... .......+.... ...+.......+...|...
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~--~~~~~~~~i-~t~ed~~e~~--~~~~~~~v~q~~-~~~~~~~~~~~La~aL~~~ 196 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDY--LNNTKYHHI-LTIEDPIEFV--HESKKCLVNQRE-VHRDTLGFSEALRSALRED 196 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH--HHHHCCCEE-EEEESSCCSC--CCCSSSEEEEEE-BTTTBSCHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc--ccCCCCcEE-EEccCcHHhh--hhccccceeeee-eccccCCHHHHHHHHhhhC
Confidence 349999999999999999988662 211111222 2222211100 000000000000 0001122444777888889
Q ss_pred ceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchHHH
Q 036323 288 KFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKETVA 330 (583)
Q Consensus 288 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~ 330 (583)
+=+|++|.+- +.+.++.+.... ..|..||+|+-.....
T Consensus 197 PdvillDEp~--d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 197 PDIILVGEMR--DLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp CSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred cCEEecCCCC--CHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 9999999994 333444433332 2366688888765544
No 169
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.56 E-value=0.022 Score=51.49 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+|+|.|++|+||||+|+.+..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 170
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.55 E-value=0.015 Score=51.47 Aligned_cols=25 Identities=32% Similarity=0.416 Sum_probs=20.7
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....+|+|.|++|+||||+++.+..
T Consensus 5 ~~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 5 HHMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp ---CEEEEESCTTSSHHHHHHHHHH
T ss_pred cccceEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999876
No 171
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.54 E-value=0.019 Score=52.00 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+++|+|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 172
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.54 E-value=0.018 Score=55.34 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+|.|+|++|+||||+|+.+..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 56899999999999999999876
No 173
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.52 E-value=0.018 Score=55.14 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=20.6
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.++.|.|++|+||||||+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999998763
No 174
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.50 E-value=0.023 Score=52.85 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=23.3
Q ss_pred CCceEEEEEEecCCchHHHHHHHHHc
Q 036323 205 TNTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
-...++|.|.|++|+||||.|+.+..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999999886
No 175
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.50 E-value=0.02 Score=51.55 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...|.|.|++|+||||+++.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999876
No 176
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.49 E-value=0.014 Score=52.84 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 177
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.48 E-value=0.011 Score=53.54 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.5
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
+.|.|+|++|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999876
No 178
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.48 E-value=0.13 Score=53.10 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+.+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 478999999999999999987765
No 179
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.44 E-value=0.16 Score=52.28 Aligned_cols=25 Identities=40% Similarity=0.303 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+|.++|.+|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999888753
No 180
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.40 E-value=0.018 Score=52.63 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.|+|.|++|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5889999999999999998873
No 181
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.38 E-value=0.035 Score=51.70 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
....|+|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678889999999999999988764
No 182
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.38 E-value=0.021 Score=52.61 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999999873
No 183
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.36 E-value=0.021 Score=52.26 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=21.6
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....+|.|+|++|+||||+|+.+..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3445899999999999999999876
No 184
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.34 E-value=0.02 Score=52.46 Aligned_cols=21 Identities=38% Similarity=0.485 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036323 210 IISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~ 230 (583)
+|+|+|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999876
No 185
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.30 E-value=0.019 Score=52.28 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+|+|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 186
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.30 E-value=0.016 Score=53.04 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999998875
No 187
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.25 E-value=0.024 Score=52.13 Aligned_cols=22 Identities=41% Similarity=0.526 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 188
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.25 E-value=0.021 Score=52.20 Aligned_cols=24 Identities=13% Similarity=0.468 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 456899999999999999999876
No 189
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=94.24 E-value=0.19 Score=51.03 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.+..
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 45899999999999999999875
No 190
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.24 E-value=0.021 Score=53.38 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+|+|+|++|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 191
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.23 E-value=0.015 Score=52.37 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036323 210 IISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~ 230 (583)
+|.|+|++|+||||+|+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 192
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.22 E-value=0.14 Score=54.08 Aligned_cols=54 Identities=9% Similarity=-0.073 Sum_probs=36.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHh
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEEL 263 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 263 (583)
...++.|.|.+|+||||||..++.+.... +=..++|++... +..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 34688999999999999998887642221 123467776643 4566666665544
No 193
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.22 E-value=0.13 Score=53.22 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=22.2
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|.|+|.+|+||||++..++..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999888753
No 194
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.22 E-value=0.021 Score=50.76 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++.|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3678999999999999999998873
No 195
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.18 E-value=0.02 Score=51.07 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.9
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..|.|.|++|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999999976
No 196
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.15 E-value=0.014 Score=52.34 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=16.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 197
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.13 E-value=0.023 Score=54.02 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|++|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 198
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.10 E-value=0.025 Score=52.26 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+|+|.|++|+||||+++.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 199
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.06 E-value=0.018 Score=51.09 Aligned_cols=22 Identities=36% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999876
No 200
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.05 E-value=0.026 Score=53.84 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=21.8
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....+|+|.|++|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999998876
No 201
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.03 E-value=0.023 Score=52.85 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999876
No 202
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.02 E-value=0.058 Score=53.12 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=22.2
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....+|+|+|..|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999998876
No 203
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.02 E-value=0.028 Score=55.44 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=22.3
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....+|+|+|..|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4567999999999999999998876
No 204
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.02 E-value=0.038 Score=51.23 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=28.5
Q ss_pred hhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 186 DEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 186 ~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
++..+.+.+.+.. ....+|+|+|.+|+|||||+..+...
T Consensus 15 ~~~~~~~~~~~~~-------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 15 KRLAEKNREALRE-------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHH-------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc-------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445555555432 24679999999999999999988764
No 205
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.02 E-value=0.024 Score=52.22 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+|+|.|++|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998863
No 206
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.00 E-value=0.23 Score=48.49 Aligned_cols=87 Identities=14% Similarity=0.021 Sum_probs=45.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCC-CChHHHHHHHHHHhhcCc---cccccHHHHHHHHHHH
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDP-FDEFNVAKATIEELEGSA---IDLHELNSLLRRIGAN 283 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~il~~l~~~~---~~~~~~~~~~~~l~~~ 283 (583)
..+++++|.+|+||||++..++.... ..-..+.+++.... ....+.+.......+..- ....+...+.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~--~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK--KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH--HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 67999999999999999988876321 11123445554322 222233333444433221 1112333343333333
Q ss_pred hc-CCceeEEEcCC
Q 036323 284 IA-GQKFFMVLDNL 296 (583)
Q Consensus 284 l~-~k~~LlVlDdv 296 (583)
++ ..-=++++|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 43 33347888875
No 207
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.97 E-value=0.029 Score=50.25 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+|+|+|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356889999999999999999876
No 208
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.95 E-value=0.026 Score=51.13 Aligned_cols=21 Identities=43% Similarity=0.700 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036323 210 IISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~ 230 (583)
+|+|.|++|+||||+++.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999977
No 209
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.95 E-value=0.026 Score=49.86 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036323 210 IISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 210
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.93 E-value=0.027 Score=51.96 Aligned_cols=23 Identities=17% Similarity=0.392 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||++.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999876
No 211
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.91 E-value=0.18 Score=50.04 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=22.3
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....+++|+|+.|+||||++..+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999998876
No 212
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.89 E-value=0.026 Score=52.82 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...|.|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999876
No 213
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.89 E-value=0.031 Score=53.00 Aligned_cols=24 Identities=21% Similarity=0.273 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+|+|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998865
No 214
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.88 E-value=0.019 Score=53.02 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
+|+|.|..|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998763
No 215
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=93.82 E-value=0.24 Score=53.33 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+++|+|+.|+|||||++.+..
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345899999999999999999865
No 216
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.81 E-value=0.036 Score=53.85 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=21.9
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+.+|+|.|++|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999873
No 217
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.80 E-value=0.16 Score=52.63 Aligned_cols=54 Identities=20% Similarity=0.114 Sum_probs=37.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCC-hHHHHHHHHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFD-EFNVAKATIE 261 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~ 261 (583)
+..-++|.|.+|+|||+|+..+.++. .+.+-+.++++-+.+... ..++...+..
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 44568899999999999999888742 122346778888877654 3455555544
No 218
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.78 E-value=0.024 Score=52.79 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999876
No 219
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.78 E-value=0.032 Score=55.07 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=20.8
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+.+||+|.|-|||||||.+-.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 4578999999999999999866644
No 220
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.77 E-value=0.34 Score=50.89 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=20.8
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...++|+|+|.+|+||||++..+..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999988875
No 221
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.77 E-value=0.063 Score=53.43 Aligned_cols=105 Identities=14% Similarity=0.069 Sum_probs=53.6
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhcCCc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIAGQK 288 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 288 (583)
.+++|+|..|+|||||++.+..- . ..-...+.+.-......... . +.+..-. . .-......+...|..++
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~--~-~~~~g~i~i~~~~e~~~~~~-~---~~i~~~~-g--gg~~~r~~la~aL~~~p 241 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF--I-PKEERIISIEDTEEIVFKHH-K---NYTQLFF-G--GNITSADCLKSCLRMRP 241 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG--S-CTTSCEEEEESSCCCCCSSC-S---SEEEEEC-B--TTBCHHHHHHHHTTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--C-cCCCcEEEECCeeccccccc-h---hEEEEEe-C--CChhHHHHHHHHhhhCC
Confidence 48999999999999999998873 1 11234444442221110000 0 0000000 0 11123345556677788
Q ss_pred eeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchH
Q 036323 289 FFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKET 328 (583)
Q Consensus 289 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~ 328 (583)
=+|++|.+-. .+.++.+ ..+..+ +..+|+||-...
T Consensus 242 ~ilildE~~~--~e~~~~l-~~~~~g--~~tvi~t~H~~~ 276 (330)
T 2pt7_A 242 DRIILGELRS--SEAYDFY-NVLCSG--HKGTLTTLHAGS 276 (330)
T ss_dssp SEEEECCCCS--THHHHHH-HHHHTT--CCCEEEEEECSS
T ss_pred CEEEEcCCCh--HHHHHHH-HHHhcC--CCEEEEEEcccH
Confidence 8999999844 2233332 233322 223666665443
No 222
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.76 E-value=0.038 Score=48.54 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+++|+|+.|+|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999999876
No 223
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.75 E-value=0.03 Score=52.20 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+++|+|+.|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456999999999999999999876
No 224
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.72 E-value=0.038 Score=50.27 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.4
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....+|+|+|+.|+||||+++.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 4577999999999999999999876
No 225
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.69 E-value=0.22 Score=51.18 Aligned_cols=24 Identities=33% Similarity=0.289 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..++.|+|.+|+||||++..++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999888763
No 226
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.68 E-value=0.2 Score=48.86 Aligned_cols=24 Identities=33% Similarity=0.289 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|+|.+|+||||++..++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999888763
No 227
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.68 E-value=0.032 Score=54.82 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+++|+|++|+|||||+..++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 456999999999999999998876
No 228
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.67 E-value=0.031 Score=51.06 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...|+|.|+.|+||||+++.+...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999874
No 229
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.67 E-value=0.23 Score=51.70 Aligned_cols=25 Identities=36% Similarity=0.461 Sum_probs=22.4
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....+++|+|..|+|||||++.+..
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHH
Confidence 4567999999999999999999876
No 230
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.65 E-value=0.12 Score=53.87 Aligned_cols=52 Identities=12% Similarity=0.040 Sum_probs=34.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIE 261 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~ 261 (583)
...++.|.|.+|+|||||+..++.+.... .-..++|++... +...+...++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~~ 253 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRMLC 253 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHHH
Confidence 34589999999999999999887642221 112466766543 44556655543
No 231
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.65 E-value=0.032 Score=50.69 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.|+|.|+.|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998773
No 232
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.62 E-value=0.027 Score=52.46 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...|.|.|++|+||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999876
No 233
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.62 E-value=0.025 Score=50.42 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+++|+|..|+|||||++.+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998876
No 234
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.62 E-value=0.037 Score=51.12 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+|.|.|++|+||||+++.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998763
No 235
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.57 E-value=0.033 Score=51.57 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=18.9
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036323 210 IISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 236
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.52 E-value=0.21 Score=46.79 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=16.6
Q ss_pred EEEEEEecCCchHHHHHHHH
Q 036323 209 QIISMVGMGGIGKTTLAQLA 228 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v 228 (583)
+.+.|+|..|+||||+....
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHH
Confidence 47899999999999876544
No 237
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.50 E-value=0.035 Score=53.00 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+|+|+|+.|+|||||++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999985
No 238
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.49 E-value=0.051 Score=56.83 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.+.|.|.+|+|||+++..+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8899999999999999888764
No 239
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.45 E-value=0.053 Score=49.54 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=27.0
Q ss_pred HHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 189 MRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 189 ~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
+..+..++... +....+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~i------Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT------PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC------TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC------CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 55566666421 23456899999999999999888774
No 240
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.45 E-value=0.22 Score=51.67 Aligned_cols=54 Identities=7% Similarity=-0.063 Sum_probs=36.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHh
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEEL 263 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 263 (583)
...++.|.|.+|+|||+||..++.+.... .-..++|++.. .+...+...++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 34588999999999999998887642211 11346776654 45566666666544
No 241
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.45 E-value=0.055 Score=50.97 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 45899999999999999999986
No 242
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.43 E-value=0.07 Score=53.71 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=27.4
Q ss_pred HHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHc
Q 036323 189 MRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 189 ~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+.+.+.... ....+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~-----~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDS-----GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGC-----CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhc-----CCceEEEEECCCCCCHHHHHHHHHH
Confidence 445555554322 4578999999999999999988865
No 243
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.41 E-value=0.036 Score=51.31 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=18.9
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036323 210 IISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 244
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.40 E-value=0.042 Score=50.95 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 245
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.33 E-value=0.063 Score=50.18 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.++.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34899999999999999999986
No 246
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.29 E-value=0.064 Score=50.71 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+++|+|+.|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6899999999999999999976
No 247
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.29 E-value=0.038 Score=51.35 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999876
No 248
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.24 E-value=0.17 Score=46.15 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.1
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.|+|=|..|+||||.++.+.+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678899999999999998874
No 249
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.23 E-value=0.12 Score=62.70 Aligned_cols=84 Identities=17% Similarity=0.110 Sum_probs=53.1
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCc-----cccccHHHHHHHH
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSA-----IDLHELNSLLRRI 280 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~~l 280 (583)
...+.+.|+|++|+|||+||.++.... ..+=..++|+++.+.++... ++.++... ......+.....+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea--~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 346789999999999999998887632 22223467787777665554 33443211 0122334555555
Q ss_pred HHHh-cCCceeEEEcCC
Q 036323 281 GANI-AGQKFFMVLDNL 296 (583)
Q Consensus 281 ~~~l-~~k~~LlVlDdv 296 (583)
.... ..+.-+||+|.+
T Consensus 1498 ~~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHHTCCSEEEESCG
T ss_pred HHHHhcCCCCEEEEcCh
Confidence 5443 356789999998
No 250
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.10 E-value=0.066 Score=51.71 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999875
No 251
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.08 E-value=0.045 Score=51.74 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=20.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+++|+|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 345899999999999999998873
No 252
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.08 E-value=0.057 Score=58.59 Aligned_cols=43 Identities=23% Similarity=0.344 Sum_probs=36.0
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..++|.+..++.+...+... ..+.|+|++|+||||||+.++..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g---------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK---------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT---------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC---------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899998888888777432 37899999999999999999874
No 253
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.04 E-value=0.051 Score=53.29 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=22.1
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....+++|+|+.|+|||||++.++.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3467999999999999999998876
No 254
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.04 E-value=0.068 Score=51.25 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.++.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999976
No 255
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.02 E-value=0.075 Score=56.60 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+++|.|.+|+|||||++.++..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4568999999999999999998763
No 256
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.94 E-value=0.032 Score=52.34 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=16.3
Q ss_pred eEEEEEEecCCchHHHHHHHHH-c
Q 036323 208 VQIISMVGMGGIGKTTLAQLAY-N 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~-~ 230 (583)
..+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 4589999999999999999998 5
No 257
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.90 E-value=0.048 Score=48.72 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..++++|+|..|+|||||+..+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3678999999999999999988763
No 258
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.83 E-value=0.25 Score=53.24 Aligned_cols=23 Identities=35% Similarity=0.564 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 45899999999999999999865
No 259
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.82 E-value=0.044 Score=49.74 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999888753
No 260
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.80 E-value=0.051 Score=49.77 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036323 210 IISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~ 230 (583)
+|+|.|+.|+||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999876
No 261
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.77 E-value=0.062 Score=53.17 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...+|.|+|+.|+|||||+..++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 262
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.77 E-value=0.054 Score=50.08 Aligned_cols=21 Identities=33% Similarity=0.338 Sum_probs=19.1
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036323 210 IISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999876
No 263
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.74 E-value=0.087 Score=47.40 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=21.9
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.....|+|+|.+|+|||||...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34457889999999999999998864
No 264
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.66 E-value=0.079 Score=50.80 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.++.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 45899999999999999999876
No 265
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.66 E-value=0.084 Score=49.87 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34899999999999999999976
No 266
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.63 E-value=0.054 Score=50.51 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036323 210 IISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999876
No 267
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.63 E-value=0.042 Score=52.30 Aligned_cols=22 Identities=36% Similarity=0.569 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+|+|+|++|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 268
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.62 E-value=0.082 Score=50.42 Aligned_cols=26 Identities=35% Similarity=0.330 Sum_probs=22.4
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
....++.+.|.||+|||||+..+...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 45678899999999999999988753
No 269
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.61 E-value=0.058 Score=53.55 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+|+|.|++|+||||||..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999887
No 270
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.60 E-value=0.085 Score=50.40 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999976
No 271
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.60 E-value=0.33 Score=50.16 Aligned_cols=65 Identities=20% Similarity=0.153 Sum_probs=41.8
Q ss_pred HHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCC-hHHHHHHHHHH
Q 036323 191 SIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFD-EFNVAKATIEE 262 (583)
Q Consensus 191 ~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~-~~~~~~~il~~ 262 (583)
+.++.|..- .+..-++|.|.+|+|||+|+..+.++. .+.+-+.++++-+.+... ..++.+.+...
T Consensus 142 r~ID~l~pi------gkGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPY------AKGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCE------ETTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEeccccc------ccCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 455555432 245578899999999999999988742 122345667777776543 34555555543
No 272
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.59 E-value=0.079 Score=47.89 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.-.|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998764
No 273
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.58 E-value=0.091 Score=54.20 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=35.6
Q ss_pred CceeechhHHHHHHHHhhcC-------CCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 180 SEVRGRDEEMRSIKSMLLCQ-------GSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~-------~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..++|.++.++.|...+... .........+-+.++|++|+|||++|+.++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 45788888888887666321 00001123456889999999999999999873
No 274
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.58 E-value=0.076 Score=46.62 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.5
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 275
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.58 E-value=0.057 Score=50.72 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...|.|.|++|+||||+|+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998863
No 276
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.56 E-value=0.075 Score=49.21 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+++|+|+.|+|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999976
No 277
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.54 E-value=0.087 Score=50.77 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.++.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999976
No 278
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.54 E-value=0.059 Score=52.72 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999886
No 279
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.53 E-value=0.082 Score=48.75 Aligned_cols=22 Identities=36% Similarity=0.333 Sum_probs=19.9
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+++|+|+.|+|||||++.++.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3899999999999999998875
No 280
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.52 E-value=0.059 Score=49.63 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=19.2
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036323 210 IISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~ 230 (583)
+|.|.|++|+||||.|+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999887
No 281
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.52 E-value=0.09 Score=50.19 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999976
No 282
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.51 E-value=0.059 Score=50.59 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+|+|.|++|+||||+++.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 283
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.48 E-value=0.055 Score=48.53 Aligned_cols=22 Identities=41% Similarity=0.477 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
-|+|+|.+|+|||||...+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998873
No 284
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.46 E-value=0.15 Score=50.32 Aligned_cols=25 Identities=40% Similarity=0.542 Sum_probs=22.2
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....+++|+|.+|+||||++..++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999988876
No 285
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.45 E-value=0.06 Score=55.49 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.9
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45679999999999999999998873
No 286
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.44 E-value=0.071 Score=52.02 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=22.1
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...++|.|+|+.|+||||||..++.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCcEEEEECCCccCHHHHHHHHHH
Confidence 3467899999999999999999887
No 287
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=92.43 E-value=0.8 Score=51.01 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=23.3
Q ss_pred HHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHH
Q 036323 188 EMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAY 229 (583)
Q Consensus 188 e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~ 229 (583)
..+.|...+... .++.|+|+.|+||||++..+.
T Consensus 98 q~~~i~~~l~~~---------~~vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 98 QRDEFLKLYQNN---------QIMVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp GHHHHHHHHHHC---------SEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhCC---------CeEEEECCCCCCHHHHHHHHH
Confidence 345566666432 478999999999999665553
No 288
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.40 E-value=0.069 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+|.|+|+.|+||||||..+..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999887
No 289
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.39 E-value=0.21 Score=59.89 Aligned_cols=84 Identities=17% Similarity=0.090 Sum_probs=55.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCcc-----ccccHHHHHHHHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAI-----DLHELNSLLRRIG 281 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 281 (583)
..+++.|.|.+|+||||||.+++... ...-..++|++.....+.. .++.++.... +..+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~--~~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HHhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 45689999999999999998887642 2223468888887766643 1444543321 2234555666555
Q ss_pred HHh-cCCceeEEEcCCC
Q 036323 282 ANI-AGQKFFMVLDNLW 297 (583)
Q Consensus 282 ~~l-~~k~~LlVlDdv~ 297 (583)
... ..+.-+||+|-+.
T Consensus 455 ~lv~~~~~~lVVIDSL~ 471 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVA 471 (1706)
T ss_dssp HHHHHTCCSEEEESCST
T ss_pred HHHHhcCCCEEEECCHH
Confidence 444 3456799999984
No 290
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.37 E-value=0.47 Score=50.91 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.7
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
+++.|.|.+|+||||++..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~ 226 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVAD 226 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5888999999999999988876
No 291
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=92.36 E-value=0.063 Score=50.51 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.2
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4566899999999999999998876
No 292
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.36 E-value=0.11 Score=53.48 Aligned_cols=88 Identities=14% Similarity=0.169 Sum_probs=48.3
Q ss_pred EEEEEEecCCchHHHHHHHHHcCcccc-ccCc-eEEEEEeCCCC-ChHHHHHHHHHH--hhcC------cccccc----H
Q 036323 209 QIISMVGMGGIGKTTLAQLAYNDNDVI-NNFE-IRVRVCVSDPF-DEFNVAKATIEE--LEGS------AIDLHE----L 273 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~f~-~~~wv~~~~~~-~~~~~~~~il~~--l~~~------~~~~~~----~ 273 (583)
.-++|.|.+|+|||+|+..+.+..... ++-+ .++++-+.+.. ...++...+... +... .+.+.- .
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a 231 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHH
Confidence 346789999999999999998853331 1111 45566665543 344455554432 1100 011100 1
Q ss_pred HHHHHHHHHHhc---CCceeEEEcCC
Q 036323 274 NSLLRRIGANIA---GQKFFMVLDNL 296 (583)
Q Consensus 274 ~~~~~~l~~~l~---~k~~LlVlDdv 296 (583)
....-.+.+++. ++.+||++||+
T Consensus 232 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 232 PRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 111223444443 78999999998
No 293
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.34 E-value=0.068 Score=52.24 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+|.|.|+.|+||||||..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 358899999999999999999873
No 294
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.31 E-value=0.071 Score=53.54 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=22.2
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....+++|+|+.|+|||||+..++.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHh
Confidence 3567999999999999999998876
No 295
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.30 E-value=0.11 Score=46.55 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999874
No 296
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.28 E-value=0.22 Score=60.47 Aligned_cols=84 Identities=17% Similarity=0.092 Sum_probs=55.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCcc-----ccccHHHHHHHHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAI-----DLHELNSLLRRIG 281 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 281 (583)
...++.|.|.+|+||||||.+++... ...-..++|++.....+... ++.++.... +..+.+++...+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 45699999999999999999887742 22223578888777665431 444543321 2345566666665
Q ss_pred HHh-cCCceeEEEcCCC
Q 036323 282 ANI-AGQKFFMVLDNLW 297 (583)
Q Consensus 282 ~~l-~~k~~LlVlDdv~ 297 (583)
... ..+.-+||+|-+.
T Consensus 455 ~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCcEEEECCHH
Confidence 444 3456799999984
No 297
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.26 E-value=0.62 Score=49.47 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=21.9
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....+++|+|+.|+|||||.+.+..
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3457999999999999999999875
No 298
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.25 E-value=0.1 Score=50.20 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999875
No 299
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.24 E-value=0.48 Score=49.08 Aligned_cols=53 Identities=11% Similarity=0.031 Sum_probs=35.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHh
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEEL 263 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l 263 (583)
...++.|.|.+|+||||||..++.+.... -..++|++.. .+...+...++...
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLIVTA 248 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHHHHH
Confidence 34689999999999999998887643222 2246666544 34556666665543
No 300
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.22 E-value=0.2 Score=53.34 Aligned_cols=40 Identities=25% Similarity=0.209 Sum_probs=26.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHH-cCccccccCceEEEEEeCC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAY-NDNDVINNFEIRVRVCVSD 248 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~-~~~~~~~~f~~~~wv~~~~ 248 (583)
...+++|+|.+|+|||||++.++ .- ....-...++++...
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~G--l~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNG--IIEFDEPGVFVTFEE 78 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHHHCCCEEEEESSS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH--HHhCCCCEEEEEEeC
Confidence 34589999999999999999852 21 111123466776543
No 301
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.20 E-value=0.066 Score=50.20 Aligned_cols=25 Identities=24% Similarity=0.135 Sum_probs=22.4
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....+|+|.|..|+|||||++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 4567999999999999999998876
No 302
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.20 E-value=0.079 Score=45.88 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.2
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.-|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999998764
No 303
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=92.18 E-value=0.72 Score=46.82 Aligned_cols=46 Identities=20% Similarity=0.230 Sum_probs=32.0
Q ss_pred ceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 181 EVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 181 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.++|....+.++.+.+..-. ..... |.|.|.+|+|||++|+.+...
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a----~~~~~-vli~Ge~GtGK~~lAr~ih~~ 183 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKIS----CAECP-VLITGESGVGKEVVARLIHKL 183 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHT----TCCSC-EEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhccHHhhHHHHHHHHhc----CCCCC-eEEecCCCcCHHHHHHHHHHh
Confidence 45666666777766654432 12233 489999999999999998763
No 304
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=92.12 E-value=0.097 Score=52.91 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=32.5
Q ss_pred CceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 180 SEVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 180 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..++|....+.++...+..-. .....|.|.|.+|+||+++|+.+.+.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a-----~~~~~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIA-----KSKAPVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHH-----TSCSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhh-----ccchhheEEeCCCchHHHHHHHHHHh
Confidence 357888777666665553221 11223679999999999999998864
No 305
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=92.11 E-value=0.6 Score=43.76 Aligned_cols=100 Identities=15% Similarity=0.155 Sum_probs=52.5
Q ss_pred EEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhc---C-c------------cccccHH
Q 036323 211 ISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEG---S-A------------IDLHELN 274 (583)
Q Consensus 211 v~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~---~-~------------~~~~~~~ 274 (583)
+.|+|..|.|||.+|..+.... . ..++++. . ...+..++.+.+.. . . .-....+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~----~-~~~liv~-P----~~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL----S-TPTLIVV-P----TLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS----C-SCEEEEE-S----SHHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc----C-CCEEEEe-C----CHHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 7789999999999998776532 1 1233332 2 22344444444332 1 0 0011223
Q ss_pred HHHHHHHHHhcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEec
Q 036323 275 SLLRRIGANIAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITT 324 (583)
Q Consensus 275 ~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTt 324 (583)
.+..... .+.++--+||+|+++.-....+..+...++ ...++++|.
T Consensus 181 ~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSA 226 (237)
T 2fz4_A 181 SAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTA 226 (237)
T ss_dssp HHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEE
T ss_pred HHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEec
Confidence 3333332 233445699999997655455666554443 233444443
No 306
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.09 E-value=0.078 Score=50.78 Aligned_cols=111 Identities=13% Similarity=0.118 Sum_probs=55.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCC-CCChHHHHHHHHHHhhcCccccccHHHHHHHHHHHhc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSD-PFDEFNVAKATIEELEGSAIDLHELNSLLRRIGANIA 285 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 285 (583)
...+++|+|+.|+|||||++.+..- ....+...+++.-.. .+-.... ..+ +....... +...+...+...|.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~--~~~~~~G~I~~~g~~i~~~~~~~-~~~---v~q~~~gl-~~~~l~~~la~aL~ 96 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIEDPIEYVFKHK-KSI---VNQREVGE-DTKSFADALRAALR 96 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHH--HHHHCCCEEEEEESSCCSCCCCS-SSE---EEEEEBTT-TBSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHh--CCCCCCCEEEEcCCcceeecCCc-cee---eeHHHhCC-CHHHHHHHHHHHHh
Confidence 3569999999999999999988762 222223333332111 0000000 000 00000000 00122445556666
Q ss_pred CCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchHH
Q 036323 286 GQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKETV 329 (583)
Q Consensus 286 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v 329 (583)
.++=+|++|..- +......+.... ..|..|++||-+...
T Consensus 97 ~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 97 EDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred hCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 677799999984 333333322222 246678888876543
No 307
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.06 E-value=0.63 Score=50.17 Aligned_cols=125 Identities=14% Similarity=0.058 Sum_probs=61.8
Q ss_pred EEEEEEecCCchHHHHHHHHHcCcccc-cc-C-c-eEEEEEeC--CCC--ChH--------------HHHHHHHHHhhcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYNDNDVI-NN-F-E-IRVRVCVS--DPF--DEF--------------NVAKATIEELEGS 266 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~-f-~-~~~wv~~~--~~~--~~~--------------~~~~~il~~l~~~ 266 (583)
.+++|+|+.|+|||||++.++.-.... +. . . .+.++.-. ..+ +.. .....+++.++..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 579999999999999999997632111 10 0 0 11222110 000 111 1222333333322
Q ss_pred c-----c-ccccHHHHHHHHHHHhcCCceeEEEcCCCcc-cccchHhhHHhhccC--CCCceEEEecCchHHHhhh
Q 036323 267 A-----I-DLHELNSLLRRIGANIAGQKFFMVLDNLWTD-DYRKWEPFRNCLMNG--LRGSKILITTRKETVARMM 333 (583)
Q Consensus 267 ~-----~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~--~~gs~IlvTtR~~~v~~~~ 333 (583)
. . ..+.-+...-.|...|..++=+|+||.--.. |...-..+...+... ..|..||++|-+...+..+
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~ 534 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYL 534 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHH
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 1 1 1122222333455667788899999986331 222222233333221 2366688888877665543
No 308
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=92.03 E-value=0.48 Score=51.07 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||++.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999998865
No 309
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.03 E-value=0.11 Score=50.27 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.++.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 34899999999999999999986
No 310
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.00 E-value=0.46 Score=47.72 Aligned_cols=36 Identities=19% Similarity=0.072 Sum_probs=27.3
Q ss_pred HHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 190 RSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 190 ~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
-++++.|..- ....-++|+|.+|+|||+|+..+.+.
T Consensus 163 iraID~l~Pi------grGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 163 TRLIDLFAPI------GKGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp HHHHHHHSCC------BTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred chhhhhcccc------cCCceEEEecCCCCChhHHHHHHHHH
Confidence 4566777533 23457789999999999999988874
No 311
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.00 E-value=0.035 Score=54.22 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=18.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
+..+|+|.|..|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999998876
No 312
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.96 E-value=0.077 Score=50.47 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.++.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34899999999999999999987
No 313
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.95 E-value=0.079 Score=48.10 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.+.|.|.|++|+||||||..+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 356889999999999999999874
No 314
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.95 E-value=0.85 Score=49.14 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+++|+|+.|+|||||.+.+..
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 345999999999999999999875
No 315
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.94 E-value=0.15 Score=50.06 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=28.2
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPF 250 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~ 250 (583)
...++|+|+|-||+||||+|..++.... ..=..++-++.....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La--~~G~~VlliD~D~~~ 81 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFS--ILGKRVLQIGCDPKH 81 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEESSSC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHH--HCCCeEEEEeCCCCC
Confidence 4578899999999999999987765321 111235556665433
No 316
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.93 E-value=0.27 Score=52.95 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=20.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+++|+|+.|+|||||++.+..
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 345899999999999999988765
No 317
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.90 E-value=0.076 Score=51.99 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+++|+|+.|+|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 456899999999999999998876
No 318
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.90 E-value=0.07 Score=48.52 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.-.|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999999864
No 319
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.88 E-value=0.082 Score=45.83 Aligned_cols=22 Identities=32% Similarity=0.620 Sum_probs=19.5
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
-|.|+|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 320
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.82 E-value=0.18 Score=46.37 Aligned_cols=111 Identities=14% Similarity=0.012 Sum_probs=51.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCcc--ccccHHHHHHHHHHHh
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAI--DLHELNSLLRRIGANI 284 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l 284 (583)
...+..++|..|.||||.+.....+... ......++ .... +...-...+.+.++.... ...+.. .+.+.+
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~-~g~kVli~-k~~~--d~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~ 98 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQF-AKQHAIVF-KPCI--DNRYSEEDVVSHNGLKVKAVPVSASK----DIFKHI 98 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHH-TTCCEEEE-ECC-------------------CCEEECSSGG----GGGGGC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH-CCCEEEEE-Eecc--CCcchHHHHHhhcCCeeEEeecCCHH----HHHHHH
Confidence 3568889999999999998776653221 22333332 2111 111111233333332211 111111 222223
Q ss_pred cCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchH
Q 036323 285 AGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKET 328 (583)
Q Consensus 285 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~ 328 (583)
.++--+|++|.+.--+.+.++.+.. +.+ .|..||+|.++.+
T Consensus 99 ~~~~dvViIDEaQF~~~~~V~~l~~-l~~--~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 99 TEEMDVIAIDEVQFFDGDIVEVVQV-LAN--RGYRVIVAGLDQD 139 (214)
T ss_dssp CSSCCEEEECCGGGSCTTHHHHHHH-HHH--TTCEEEEEECSBC
T ss_pred hcCCCEEEEECcccCCHHHHHHHHH-Hhh--CCCEEEEEecccc
Confidence 3333499999985543344433332 222 3778999988544
No 321
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.82 E-value=0.13 Score=52.93 Aligned_cols=89 Identities=10% Similarity=0.066 Sum_probs=48.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCcccc--------ccCc-eEEEEEeCCCC-ChHHHHHHHHHH--hhcC-----cccc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVI--------NNFE-IRVRVCVSDPF-DEFNVAKATIEE--LEGS-----AIDL 270 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------~~f~-~~~wv~~~~~~-~~~~~~~~il~~--l~~~-----~~~~ 270 (583)
-.-++|.|.+|+|||+|+..+.+..... ++-+ .++++-+.+.. ...++...+... +... ..+.
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 3456789999999999999998754331 1112 45566665543 233444443331 1100 0011
Q ss_pred ccH-----HHHHHHHHHHh---cCCceeEEEcCC
Q 036323 271 HEL-----NSLLRRIGANI---AGQKFFMVLDNL 296 (583)
Q Consensus 271 ~~~-----~~~~~~l~~~l---~~k~~LlVlDdv 296 (583)
... ....-.+.+++ +++.+||++||+
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 111 11222334444 378999999998
No 322
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.82 E-value=0.091 Score=49.22 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
....|+|.|++|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 323
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.79 E-value=0.082 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=21.1
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.++.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999987
No 324
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.77 E-value=0.26 Score=53.24 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||++.+..
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g 392 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLR 392 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999865
No 325
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.75 E-value=0.22 Score=53.85 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+++|+|+.|+|||||++.+..
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 346899999999999999999875
No 326
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.75 E-value=0.14 Score=51.76 Aligned_cols=25 Identities=28% Similarity=0.159 Sum_probs=22.1
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
+...+++|+|++|+|||||++.+..
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3456999999999999999999986
No 327
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.68 E-value=0.096 Score=49.37 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...|+|.|..|+||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998873
No 328
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.65 E-value=0.077 Score=50.80 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|+|+.|+|||||.+.+..-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999763
No 329
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.54 E-value=0.094 Score=50.70 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..++.|+|.+|+|||||+..++.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45899999999999999988875
No 330
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.51 E-value=0.087 Score=50.06 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.++.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 34899999999999999999986
No 331
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.50 E-value=0.16 Score=48.51 Aligned_cols=36 Identities=17% Similarity=0.095 Sum_probs=27.0
Q ss_pred HHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHc
Q 036323 190 RSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 190 ~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.-+..+|.... +....+.++|++|+|||.+|..+++
T Consensus 91 ~~l~~~l~~~~-----~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 91 SVFLGWATKKF-----GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHTTCS-----TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCC-----CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 44666664321 3345799999999999999999987
No 332
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.46 E-value=0.23 Score=59.51 Aligned_cols=84 Identities=17% Similarity=0.097 Sum_probs=58.6
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCcc-----ccccHHHHHHHH
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAI-----DLHELNSLLRRI 280 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 280 (583)
+..++|-|+|+.|+||||||.++... .+..=...+|++..+..+..- ++.++.... .+..-++.+..+
T Consensus 1429 prg~~iei~g~~~sGkttl~~~~~a~--~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~ 1501 (1706)
T 3cmw_A 1429 PMGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1501 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHH--HHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHH
Confidence 45579999999999999999988862 444456678888887776553 666665432 233345555556
Q ss_pred HHHhc-CCceeEEEcCC
Q 036323 281 GANIA-GQKFFMVLDNL 296 (583)
Q Consensus 281 ~~~l~-~k~~LlVlDdv 296 (583)
...++ +..-+||+|-|
T Consensus 1502 ~~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1502 DALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHHTCCSEEEESCS
T ss_pred HHHHHcCCCCEEEEccH
Confidence 55554 45669999987
No 333
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.40 E-value=0.13 Score=46.35 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567889999999999999998864
No 334
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.39 E-value=0.14 Score=45.04 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|+|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 446789999999999999998764
No 335
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=91.39 E-value=0.29 Score=50.83 Aligned_cols=86 Identities=20% Similarity=0.167 Sum_probs=47.4
Q ss_pred ceEEEEEEecCCchHHHHH-HHHHcCccccccCce-EEEEEeCCCCC-hHHHHHHHHHHhhc--------CccccccHH-
Q 036323 207 TVQIISMVGMGGIGKTTLA-QLAYNDNDVINNFEI-RVRVCVSDPFD-EFNVAKATIEELEG--------SAIDLHELN- 274 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~~~-~~~~~~~il~~l~~--------~~~~~~~~~- 274 (583)
+..-++|.|.+|+|||+|| ..+.+.. .-+. ++++-+.+... ..++.+.+...-.. ..+++....
T Consensus 174 rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~ 249 (515)
T 2r9v_A 174 RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQY 249 (515)
T ss_dssp TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHH
T ss_pred cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHH
Confidence 3456789999999999996 5777742 2443 46666666543 33444444332100 011111111
Q ss_pred ---HHHHHHHHHh--cCCceeEEEcCC
Q 036323 275 ---SLLRRIGANI--AGQKFFMVLDNL 296 (583)
Q Consensus 275 ---~~~~~l~~~l--~~k~~LlVlDdv 296 (583)
...-.+.+++ +++.+||++||+
T Consensus 250 ~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 250 IAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 1111233333 478999999998
No 336
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.38 E-value=0.14 Score=45.13 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.0
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999998764
No 337
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.35 E-value=0.16 Score=50.92 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.++.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 35899999999999999999975
No 338
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.33 E-value=0.091 Score=45.80 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.0
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
-|+|+|.+|+|||||...+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4679999999999999988653
No 339
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=91.33 E-value=1.2 Score=50.54 Aligned_cols=118 Identities=16% Similarity=0.094 Sum_probs=62.9
Q ss_pred EEEEEEecCCchHHHHHHHHHcCcccc-----ccCceEEEEEeCCCC-------Ch-----------HHHHHHHHHHhhc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYNDNDVI-----NNFEIRVRVCVSDPF-------DE-----------FNVAKATIEELEG 265 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~~~~~-----~~f~~~~wv~~~~~~-------~~-----------~~~~~~il~~l~~ 265 (583)
.+++|+|..|+|||||.+.+..- .+. ... ... .+.+.. +. ......+++.++.
T Consensus 462 e~v~LiGpNGsGKSTLLk~LagG-~i~g~~~~~~~-~~~--~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL 537 (986)
T 2iw3_A 462 RRYGICGPNGCGKSTLMRAIANG-QVDGFPTQEEC-RTV--YVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGF 537 (986)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHT-CSTTCCCTTTS-CEE--ETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC-CcCCCccccce-eEE--EEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCC
Confidence 47899999999999999999731 111 001 111 222211 11 1223344444443
Q ss_pred Cc-------cccccHHHHHHHHHHHhcCCceeEEEcCCCc-ccccchHhhHHhhccCCCCceEEEecCchHHHhh
Q 036323 266 SA-------IDLHELNSLLRRIGANIAGQKFFMVLDNLWT-DDYRKWEPFRNCLMNGLRGSKILITTRKETVARM 332 (583)
Q Consensus 266 ~~-------~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~ 332 (583)
.. ...+.-+...-.|...+-.++=+|+||.--+ -|......+...+.. .|..||++|-+......
T Consensus 538 ~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~ 610 (986)
T 2iw3_A 538 TDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDN 610 (986)
T ss_dssp CHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHH
T ss_pred ChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHH
Confidence 21 1112222233344555667788999998643 122233345555544 46778888888766544
No 340
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.28 E-value=0.13 Score=44.88 Aligned_cols=24 Identities=25% Similarity=0.428 Sum_probs=20.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|.|+|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345779999999999999998764
No 341
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.25 E-value=0.16 Score=44.81 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=22.0
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
....-|+|+|.+|+|||||...+...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567889999999999999998765
No 342
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.22 E-value=0.1 Score=45.61 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.1
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
--|+|+|.+|+|||||+..+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3478999999999999999864
No 343
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.20 E-value=0.11 Score=50.00 Aligned_cols=21 Identities=38% Similarity=0.670 Sum_probs=19.0
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036323 210 IISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999998875
No 344
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=91.13 E-value=0.1 Score=45.34 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=20.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..-|+|+|.+|+|||||...+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999998764
No 345
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.11 E-value=0.11 Score=45.50 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=19.8
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 34679999999999999998764
No 346
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.11 E-value=0.1 Score=46.80 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
--|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999998764
No 347
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.08 E-value=0.12 Score=46.17 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.6
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
-|+|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998875
No 348
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.02 E-value=0.11 Score=51.35 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=22.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..++++|+|+.|+|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999864
No 349
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.00 E-value=0.17 Score=44.52 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=20.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..--|+|+|.+|+|||||...+.+.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3445789999999999999998764
No 350
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.00 E-value=0.14 Score=45.36 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45789999999999999999864
No 351
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.97 E-value=0.27 Score=45.36 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...|.|.|+.|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468899999999999999998774
No 352
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.95 E-value=0.11 Score=45.23 Aligned_cols=22 Identities=27% Similarity=0.537 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
-|+|+|.+|+|||||...+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 353
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.94 E-value=0.11 Score=45.08 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
-|+|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999888754
No 354
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.89 E-value=0.14 Score=45.58 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...-|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3566789999999999999998864
No 355
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.89 E-value=0.14 Score=45.80 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...|+|+|.+|+|||||...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 446789999999999999998875
No 356
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.89 E-value=0.11 Score=45.26 Aligned_cols=22 Identities=14% Similarity=0.374 Sum_probs=19.4
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
-|+|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
No 357
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.84 E-value=0.11 Score=45.25 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|+|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999998765
No 358
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.82 E-value=0.14 Score=44.67 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=21.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..--|+|+|.+|+|||||...+...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456789999999999999998764
No 359
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.80 E-value=0.12 Score=45.09 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=19.9
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999998764
No 360
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=90.79 E-value=0.21 Score=46.48 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.7
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.....|.|.|..|+||||+++.+.+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~ 44 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEY 44 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999999999874
No 361
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.77 E-value=0.26 Score=45.93 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=18.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...|.|.|+.|+||||+++.+.+.
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~ 48 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDR 48 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999999999874
No 362
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.73 E-value=0.12 Score=46.43 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=20.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|+|+|.+|+|||||+..+.+.
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 446779999999999999887654
No 363
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.70 E-value=0.16 Score=45.31 Aligned_cols=25 Identities=32% Similarity=0.314 Sum_probs=20.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..--|+|+|.+|+|||||+..+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3445779999999999999998764
No 364
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.68 E-value=0.12 Score=47.04 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=19.9
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.-|+|+|.+|+|||||...+...
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999998763
No 365
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.68 E-value=0.078 Score=48.13 Aligned_cols=109 Identities=12% Similarity=0.039 Sum_probs=52.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCcc--ccccHHHHHHHHHHHhc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAI--DLHELNSLLRRIGANIA 285 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~l~ 285 (583)
..+..++|..|.||||.+..+.+... ...+...++-..-+. ..-...+.+.++.... ...+.. .+.+.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g~kV~v~k~~~d~---r~~~~~i~s~~g~~~~a~~~~~~~----~i~~~~~ 79 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK-IAKQKIQVFKPEIDN---RYSKEDVVSHMGEKEQAVAIKNSR----EILKYFE 79 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEEC----------CEEECTTSCEEECEEESSST----HHHHHCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH-HCCCEEEEEEeccCc---cchHHHHHhhcCCceeeEeeCCHH----HHHHHHh
Confidence 46899999999999999877766422 122333333211110 0000111222221100 111112 2333333
Q ss_pred CCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCch
Q 036323 286 GQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKE 327 (583)
Q Consensus 286 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~ 327 (583)
++-=+|++|.+..-+.+.++.+.. +.+ .|..||+|.++.
T Consensus 80 ~~~dvViIDEaqfl~~~~v~~l~~-l~~--~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 80 EDTEVIAIDEVQFFDDEIVEIVNK-IAE--SGRRVICAGLDM 118 (191)
T ss_dssp TTCSEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEEECSB
T ss_pred ccCCEEEEECCCCCCHHHHHHHHH-HHh--CCCEEEEEeccc
Confidence 333499999985433334444333 222 267899988754
No 366
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.67 E-value=0.084 Score=50.58 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=21.9
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
....|+|.|..|+||||+++.+...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999999999988763
No 367
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.65 E-value=0.13 Score=47.38 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=22.0
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.....|.|+|.+|+|||||+..+...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999998875
No 368
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.62 E-value=0.16 Score=44.93 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4556789999999999999988764
No 369
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.62 E-value=0.12 Score=44.96 Aligned_cols=20 Identities=40% Similarity=0.419 Sum_probs=18.3
Q ss_pred EEEEecCCchHHHHHHHHHc
Q 036323 211 ISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 211 v~I~G~gGiGKTtLa~~v~~ 230 (583)
|+|+|.+|+|||||...+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999865
No 370
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=90.61 E-value=0.21 Score=49.78 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.0
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....+++|+|.+|+|||||.+.+..
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467999999999999999999875
No 371
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.61 E-value=0.14 Score=46.08 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.1
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
....-|+|+|.+|+|||||...+...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 45667889999999999999998765
No 372
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.56 E-value=0.12 Score=46.33 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=20.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|+|+|.+|+|||||+..+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 446789999999999999888764
No 373
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=90.53 E-value=0.14 Score=45.62 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=19.1
Q ss_pred EEEEEecCCchHHHHHHHHHc
Q 036323 210 IISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~ 230 (583)
+.+|+|..|+|||||+..++-
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999988864
No 374
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.52 E-value=0.11 Score=45.97 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=19.9
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
--|+|+|.+|+|||||...+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45779999999999999998764
No 375
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.52 E-value=0.14 Score=51.92 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=20.3
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+|+|.|+.|+||||||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5889999999999999999876
No 376
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.51 E-value=0.14 Score=46.76 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999998754
No 377
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.49 E-value=0.082 Score=57.10 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.8
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
-|.++|++|+|||+||+.+++.
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTT
T ss_pred ceEEECCCchHHHHHHHHHHHh
Confidence 5789999999999999998874
No 378
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.48 E-value=0.15 Score=51.15 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+|+|+|.+|+|||||...+..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 467999999999999999999875
No 379
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.48 E-value=0.23 Score=46.63 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...|.|.|+.|+||||+++.+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~ 50 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVET 50 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998874
No 380
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.46 E-value=0.19 Score=51.95 Aligned_cols=89 Identities=10% Similarity=0.019 Sum_probs=49.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCcccccc--CceEEEEEeCCCC-ChHHHHHHHHHHhhcC--------cccccc----
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINN--FEIRVRVCVSDPF-DEFNVAKATIEELEGS--------AIDLHE---- 272 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--f~~~~wv~~~~~~-~~~~~~~~il~~l~~~--------~~~~~~---- 272 (583)
..-++|.|.+|+|||+|+..++++....+. =+.++++-+.+.. ...++...+...-... .+.+..
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~ 231 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIV 231 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHH
Confidence 445678899999999999999875433211 1345666665543 3445555554331110 011000
Q ss_pred HHHHHHHHHHHh---cCCceeEEEcCC
Q 036323 273 LNSLLRRIGANI---AGQKFFMVLDNL 296 (583)
Q Consensus 273 ~~~~~~~l~~~l---~~k~~LlVlDdv 296 (583)
.....-.+.+++ +++.+||++||+
T Consensus 232 ~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 232 TPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 111122233444 478999999997
No 381
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.40 E-value=0.14 Score=46.19 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.1
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.-|+|+|.+|+|||||...+.+.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36789999999999999998864
No 382
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.38 E-value=0.21 Score=50.00 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.++.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999875
No 383
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.37 E-value=0.13 Score=44.77 Aligned_cols=24 Identities=17% Similarity=0.271 Sum_probs=20.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|+|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 345789999999999999998754
No 384
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.36 E-value=0.13 Score=50.12 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+++|+|+.|+|||||.+.+..-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 458999999999999999999763
No 385
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=90.35 E-value=0.38 Score=49.38 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=23.2
Q ss_pred CCceEEEEEEecCCchHHHHHHHHHc
Q 036323 205 TNTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....++..|.|.+|.||||+.+..++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 45788999999999999999998876
No 386
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.34 E-value=0.14 Score=52.31 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+++|+|..|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 456999999999999999999987
No 387
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=90.33 E-value=0.14 Score=45.09 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=19.8
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
--|+|+|.+|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998754
No 388
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.31 E-value=0.76 Score=54.48 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....++|+|+.|+|||||++.+..
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTT
T ss_pred CCcEEEEEecCCCcHHHHHHHhcc
Confidence 345899999999999999999876
No 389
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.29 E-value=0.21 Score=50.36 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.+..
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 35899999999999999999975
No 390
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.25 E-value=0.22 Score=49.99 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 45899999999999999999975
No 391
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=90.24 E-value=0.092 Score=48.02 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
....|+|+|.+|+|||||.+.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999887753
No 392
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.23 E-value=0.17 Score=44.58 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=21.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..--|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 3456789999999999999998754
No 393
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.21 E-value=0.22 Score=50.02 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 45899999999999999999875
No 394
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.15 E-value=0.22 Score=50.23 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.++.
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCcHHHHHHHHHHc
Confidence 34899999999999999999975
No 395
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=90.14 E-value=0.14 Score=45.62 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
--|+|+|.+|+|||||...+.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999998764
No 396
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.13 E-value=0.22 Score=50.16 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.++.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 45899999999999999999875
No 397
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=90.13 E-value=0.25 Score=49.31 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=21.8
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....+|+|+|.+|+|||||+..+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999988864
No 398
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=90.13 E-value=0.14 Score=46.24 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=19.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.--|+|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34578999999999999988874
No 399
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.11 E-value=0.13 Score=46.11 Aligned_cols=23 Identities=35% Similarity=0.273 Sum_probs=19.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.--|+|+|.+|+|||||++.+.+
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 44678999999999999977765
No 400
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=90.09 E-value=0.15 Score=54.02 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+|.++|++|+||||+|+.+..
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 401
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.09 E-value=0.17 Score=44.75 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...-|+|+|.+|+|||||+..+.+.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3557889999999999999998854
No 402
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.07 E-value=0.21 Score=44.25 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..--|+|+|.+|+|||||...+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456789999999999999998864
No 403
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.06 E-value=0.2 Score=44.12 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=21.9
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
....-|.|+|.+|+|||||...+...
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34567889999999999999998764
No 404
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.03 E-value=0.17 Score=49.03 Aligned_cols=39 Identities=23% Similarity=0.259 Sum_probs=25.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSD 248 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 248 (583)
.++|+|.|-||+||||+|..+....... . ..++-++...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~-G-~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM-G-KKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT-T-CCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC-C-CeEEEEecCC
Confidence 4678889999999999998776532111 1 2345556543
No 405
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=90.03 E-value=0.18 Score=44.51 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=21.8
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...--|+|+|.+|+|||||+..+...
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34556789999999999999998764
No 406
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.99 E-value=0.15 Score=45.35 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=20.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|+|+|.+|+|||||...+.+.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 345789999999999999988754
No 407
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=89.99 E-value=0.17 Score=48.37 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=25.3
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSD 248 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~ 248 (583)
++|+|.|-||+||||+|..+..... ..-..++-++...
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la--~~G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH--AMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH--HCCCcEEEEcCCC
Confidence 5788899999999999977765322 1112355566543
No 408
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=89.94 E-value=0.19 Score=49.33 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.9
Q ss_pred CCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 205 TNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.+....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 466889999999999999999998764
No 409
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=89.94 E-value=0.16 Score=45.90 Aligned_cols=24 Identities=17% Similarity=0.462 Sum_probs=19.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|.|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 345779999999999999877663
No 410
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.91 E-value=0.19 Score=50.36 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..+++|+|+.|+|||||.+.++.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999875
No 411
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.89 E-value=0.16 Score=46.08 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=20.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
..--|+|+|.+|+|||||...+..
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 455788999999999999999853
No 412
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.86 E-value=0.098 Score=54.00 Aligned_cols=25 Identities=36% Similarity=0.416 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.+.+|.|+|.+|+||||++..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999888763
No 413
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.86 E-value=0.15 Score=45.09 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=19.8
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
--|+|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35679999999999999998764
No 414
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=89.84 E-value=0.2 Score=43.78 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..-|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998764
No 415
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.83 E-value=0.24 Score=43.99 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..--|+|+|.+|+|||||...+.+.
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3456789999999999999998764
No 416
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.83 E-value=0.15 Score=45.21 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..-|+|+|.+|+|||||+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456789999999999999998764
No 417
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=89.81 E-value=0.64 Score=48.25 Aligned_cols=86 Identities=20% Similarity=0.178 Sum_probs=47.1
Q ss_pred ceEEEEEEecCCchHHHHH-HHHHcCccccccCce-EEEEEeCCCCC-hHHHHHHHHHHhhcC--------ccccccHH-
Q 036323 207 TVQIISMVGMGGIGKTTLA-QLAYNDNDVINNFEI-RVRVCVSDPFD-EFNVAKATIEELEGS--------AIDLHELN- 274 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~~-~~wv~~~~~~~-~~~~~~~il~~l~~~--------~~~~~~~~- 274 (583)
+..-++|.|.+|+|||+|| ..+.+.. +-+. ++++-+.+... ..++.+.+...-... .+++....
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~ 236 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLY 236 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHH
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHH
Confidence 3456789999999999996 5777642 2443 46666766543 334444443311100 11111111
Q ss_pred ---HHHHHHHHHh--cCCceeEEEcCC
Q 036323 275 ---SLLRRIGANI--AGQKFFMVLDNL 296 (583)
Q Consensus 275 ---~~~~~l~~~l--~~k~~LlVlDdv 296 (583)
...-.+.+++ +++.+||++||+
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 237 LAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 1111233333 578999999998
No 418
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.80 E-value=0.22 Score=44.47 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=21.6
Q ss_pred CceEEEEEEecCCchHHHHHHHHHcC
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...--|+|+|.+|+|||||+..+...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 34456789999999999999998864
No 419
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.78 E-value=0.16 Score=46.43 Aligned_cols=24 Identities=33% Similarity=0.326 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|+|+|.+|+|||||+..+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999998765
No 420
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.77 E-value=0.17 Score=50.99 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...++|+|..|+|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999998876
No 421
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.75 E-value=0.16 Score=46.25 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..--|+|+|.+|+|||||+..+...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999988754
No 422
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.74 E-value=0.16 Score=45.90 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=20.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|+|+|.+|+|||||+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345779999999999999998764
No 423
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.73 E-value=0.17 Score=45.61 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456789999999999999998764
No 424
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=89.69 E-value=0.4 Score=45.95 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
....|+|+|.+|+|||||...++..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3567889999999999999998865
No 425
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=89.67 E-value=0.19 Score=49.24 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4568999999999999999998864
No 426
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.62 E-value=0.19 Score=52.82 Aligned_cols=46 Identities=9% Similarity=-0.018 Sum_probs=30.7
Q ss_pred ceeechhHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 181 EVRGRDEEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 181 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+.|.+-.+.+.+... + ......+|.+.|++|+||||+|+.+...
T Consensus 373 ~~f~rpeV~~vLr~~~~-~----~~~~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 373 EWFSYPEVVKILRESNP-P----RPKQGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp TTTSCHHHHHHHHHHSC-C----GGGCCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred ccccChhhHHHHHHhcc-c----ccccceEEEecccCCCCHHHHHHHHHHH
Confidence 34455444445554431 1 1134578999999999999999999874
No 427
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=89.61 E-value=0.17 Score=45.83 Aligned_cols=25 Identities=24% Similarity=0.310 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..--|+|+|.+|+|||||+..+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3456889999999999999998764
No 428
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=89.60 E-value=0.39 Score=45.76 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
....|+|+|.+|+|||||...+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999998865
No 429
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=89.59 E-value=0.39 Score=46.57 Aligned_cols=42 Identities=14% Similarity=0.237 Sum_probs=29.0
Q ss_pred HHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcC
Q 036323 189 MRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 189 ~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
++++.+.|.... ........-|+|+|.+|+|||||...+...
T Consensus 8 ~~~l~~~l~~~~-~~~~~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 8 VNRLQDAFSAIG-QNADLDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp HHHHHHHHTTSC-CCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHhcC-CCCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 455555554332 112234567899999999999999999875
No 430
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.56 E-value=0.23 Score=44.99 Aligned_cols=25 Identities=36% Similarity=0.615 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...-|+|+|.+|+|||||...+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999998754
No 431
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=89.54 E-value=0.2 Score=46.52 Aligned_cols=25 Identities=16% Similarity=0.355 Sum_probs=21.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...-|+|+|.+|+|||||+..+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999775
No 432
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=89.54 E-value=0.33 Score=44.77 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..|.|.|..|+||||+++.+...
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~ 26 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVET 26 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998874
No 433
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.52 E-value=0.22 Score=44.05 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.7
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
+-|.|.|.+|+||||||..+..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4678999999999999998876
No 434
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.50 E-value=0.17 Score=45.46 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=19.9
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
--|+|+|.+|+|||||...+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 45779999999999999998764
No 435
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.48 E-value=0.21 Score=44.11 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..--|+|+|.+|+|||||...+...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456789999999999999998764
No 436
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.48 E-value=0.24 Score=44.50 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..--|+|+|.+|+|||||...+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3456789999999999999998764
No 437
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=89.48 E-value=0.17 Score=45.65 Aligned_cols=24 Identities=33% Similarity=0.284 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|+|+|.+|+|||||+..+...
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhC
Confidence 345789999999999999998764
No 438
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.47 E-value=0.17 Score=45.93 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...-|+|+|.+|+|||||+..+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3456789999999999999998864
No 439
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=89.47 E-value=0.18 Score=45.72 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=20.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..--|+|+|.+|+|||||...+...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999998764
No 440
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=89.47 E-value=0.17 Score=45.12 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=21.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcCc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYNDN 232 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~~ 232 (583)
..-|+|+|.+|+|||||...+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4567899999999999999998653
No 441
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=89.47 E-value=0.17 Score=46.91 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=18.9
Q ss_pred EEEEEecCCchHHHHHHHHHcC
Q 036323 210 IISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 210 vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
-|.|+|.+|+|||+|+..+.++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 3668999999999999988764
No 442
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.46 E-value=0.21 Score=45.54 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=20.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|+|+|.+|+|||||...+.++
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 345679999999999999888764
No 443
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=89.45 E-value=0.17 Score=45.62 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345779999999999999999875
No 444
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=89.43 E-value=0.18 Score=46.57 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.--|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 44678999999999999999874
No 445
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.40 E-value=0.19 Score=50.87 Aligned_cols=108 Identities=14% Similarity=0.124 Sum_probs=54.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEE-EEEeCCCCChHHHHHHHHHHhhcCccc--cccHHHHHHHHHHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRV-RVCVSDPFDEFNVAKATIEELEGSAID--LHELNSLLRRIGAN 283 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~ 283 (583)
...+++|+|+.|+|||||++.+... ........+ ++.. +.... .. .....-... ..+...+...+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~--~~~~~~g~I~~~e~--~~e~~--~~---~~~~~v~Q~~~g~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY--INQTKSYHIITIED--PIEYV--FK---HKKSIVNQREVGEDTKSFADALRAA 205 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH--HHHHSCCEEEEEES--SCCSC--CC---CSSSEEEEEEBTTTBSCSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh--cCcCCCcEEEEecc--cHhhh--hc---cCceEEEeeecCCCHHHHHHHHHHH
Confidence 3568999999999999999888762 221112222 2221 11100 00 000000000 00011223456666
Q ss_pred hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchH
Q 036323 284 IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKET 328 (583)
Q Consensus 284 l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~ 328 (583)
+...+=+|++|.+- +.+....+.. ....|..|+.|+-...
T Consensus 206 L~~~pd~illdE~~--d~e~~~~~l~---~~~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 206 LREDPDVIFVGEMR--DLETVETALR---AAETGHLVFGTLHTNT 245 (372)
T ss_dssp TTSCCSEEEESCCC--SHHHHHHHHH---HHTTTCEEEECCCCCS
T ss_pred hhhCcCEEEECCCC--CHHHHHHHHH---HHhcCCEEEEEECcch
Confidence 77778899999984 2223332222 2234666777776544
No 446
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.39 E-value=0.18 Score=44.66 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..-|+|+|.+|+|||||...+...
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999988753
No 447
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=89.37 E-value=0.17 Score=49.46 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=18.1
Q ss_pred EEEEecCCchHHHHHHHHHc
Q 036323 211 ISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 211 v~I~G~gGiGKTtLa~~v~~ 230 (583)
|+|+|.+|+|||||.+.++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 48999999999999999765
No 448
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.36 E-value=0.18 Score=45.26 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|+|+|.+|+|||||...+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 446789999999999999998764
No 449
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=89.34 E-value=0.24 Score=48.51 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=25.3
Q ss_pred HHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHH
Q 036323 189 MRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAY 229 (583)
Q Consensus 189 ~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~ 229 (583)
+++|.+.+. ..+++|+|+.|+|||||.+.+.
T Consensus 156 i~~L~~~l~----------G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE----------GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT----------TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc----------CcEEEEECCCCCCHHHHHHHHH
Confidence 566776662 2478999999999999999988
No 450
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=89.33 E-value=0.46 Score=49.82 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=34.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCCh-HHHHHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDE-FNVAKA 258 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~ 258 (583)
+..-++|.|..|+|||+|+..+.+.. +-+.++++-+.+.... .++...
T Consensus 226 kGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 226 KGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp TTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHH
T ss_pred cCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence 44578899999999999999987631 2356777878776543 334333
No 451
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.32 E-value=0.17 Score=46.31 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.3
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456789999999999999998764
No 452
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.29 E-value=0.18 Score=45.42 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..--|+|+|.+|+|||||...+.+.
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3456789999999999999998865
No 453
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=89.25 E-value=0.15 Score=47.06 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=19.9
Q ss_pred EEEEEEecCCchHHHHHHHHHc
Q 036323 209 QIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.+|+|+|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998876
No 454
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=89.21 E-value=0.24 Score=43.95 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|+|+|.+|+|||||...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999999864
No 455
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=89.20 E-value=0.92 Score=47.03 Aligned_cols=86 Identities=21% Similarity=0.184 Sum_probs=47.3
Q ss_pred ceEEEEEEecCCchHHHHH-HHHHcCccccccCc-eEEEEEeCCCCC-hHHHHHHHHHHhhcC--------ccccccHH-
Q 036323 207 TVQIISMVGMGGIGKTTLA-QLAYNDNDVINNFE-IRVRVCVSDPFD-EFNVAKATIEELEGS--------AIDLHELN- 274 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~~-~~~~~~~il~~l~~~--------~~~~~~~~- 274 (583)
+..-++|.|..|+|||+|+ ..+.+. .+-+ .++++-+.+... ..++.+.+...-... .+++....
T Consensus 161 rGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~ 236 (513)
T 3oaa_A 161 RGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQY 236 (513)
T ss_dssp TTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHH
T ss_pred cCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHH
Confidence 3456789999999999996 566663 1233 356777776543 344444443321110 11111111
Q ss_pred ---HHHHHHHHHh--cCCceeEEEcCC
Q 036323 275 ---SLLRRIGANI--AGQKFFMVLDNL 296 (583)
Q Consensus 275 ---~~~~~l~~~l--~~k~~LlVlDdv 296 (583)
...-.+.+++ +++.+||++||+
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLli~Dsl 263 (513)
T 3oaa_A 237 LAPYAGCAMGEYFRDRGEDALIIYDDL 263 (513)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 1111222333 589999999998
No 456
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=89.19 E-value=0.19 Score=45.52 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=20.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|+|+|.+|+|||||...+.+.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 445779999999999999998764
No 457
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=89.15 E-value=0.2 Score=46.08 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=20.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|+|+|.+|+|||||...+...
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446789999999999999998764
No 458
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.15 E-value=0.27 Score=43.38 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=21.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..--|+|+|.+|+|||||...+...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3456789999999999999998764
No 459
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=89.10 E-value=0.24 Score=46.48 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...-|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4567889999999999999998875
No 460
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.08 E-value=0.24 Score=45.99 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=19.0
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
-.|.+.|.||+||||++..+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHH
Confidence 34778999999999998777763
No 461
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.02 E-value=0.18 Score=53.72 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHHc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...+++|+|+.|+|||||++.+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHH
Confidence 356899999999999999999887
No 462
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=89.00 E-value=0.24 Score=44.88 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=21.4
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4556889999999999999998764
No 463
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.00 E-value=0.18 Score=47.00 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=19.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
.-.++|.|++|+||||+|+.+..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 34678999999999999998876
No 464
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.96 E-value=0.77 Score=47.75 Aligned_cols=90 Identities=18% Similarity=0.172 Sum_probs=47.9
Q ss_pred ceEEEEEEecCCchHHHHH-HHHHcCccc----cccCc-eEEEEEeCCCCC-hHHHHHHHHHHhhc--------Cccccc
Q 036323 207 TVQIISMVGMGGIGKTTLA-QLAYNDNDV----INNFE-IRVRVCVSDPFD-EFNVAKATIEELEG--------SAIDLH 271 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~----~~~f~-~~~wv~~~~~~~-~~~~~~~il~~l~~--------~~~~~~ 271 (583)
+..-++|.|.+|+|||+|| ..+.+.... .++-+ .++++-+.+... ..++.+.+...-.. ..+++.
T Consensus 161 rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~ 240 (510)
T 2ck3_A 161 RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAA 240 (510)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCH
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCH
Confidence 3456789999999999995 566664321 01234 366777776543 33444444331100 011111
Q ss_pred cHH----HHHHHHHHHh--cCCceeEEEcCC
Q 036323 272 ELN----SLLRRIGANI--AGQKFFMVLDNL 296 (583)
Q Consensus 272 ~~~----~~~~~l~~~l--~~k~~LlVlDdv 296 (583)
... ...-.+.+++ +++.+||++||+
T Consensus 241 ~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 241 PLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 111 1111233333 478999999998
No 465
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=88.95 E-value=0.2 Score=45.54 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..--|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999998764
No 466
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.92 E-value=0.19 Score=47.25 Aligned_cols=40 Identities=25% Similarity=0.156 Sum_probs=26.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVS 247 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~ 247 (583)
...++.|.|.+|+|||+||.+++.+. ....-..+++++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E 68 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeeccc
Confidence 34588999999999999998876431 12222345555544
No 467
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.91 E-value=0.19 Score=45.50 Aligned_cols=24 Identities=17% Similarity=0.301 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..-|+|+|.+|+|||||+..+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 456789999999999999998764
No 468
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=88.91 E-value=0.29 Score=43.78 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|+|+|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999998764
No 469
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.88 E-value=0.2 Score=44.93 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|+|+|.+|+|||||...+.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346789999999999999998764
No 470
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=88.83 E-value=0.27 Score=44.72 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=21.5
Q ss_pred CceEEEEEEecCCchHHHHHHHHHc
Q 036323 206 NTVQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
....+|+|+|++|+||+|+|..+.+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHH
Confidence 3567999999999999999988755
No 471
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=88.83 E-value=0.21 Score=52.34 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..+|.++|++|+||||+++.+...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999999998763
No 472
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.83 E-value=1.3 Score=56.40 Aligned_cols=137 Identities=16% Similarity=0.119 Sum_probs=73.6
Q ss_pred EEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHHHHhhcCcccc-ccHHHHHHHHHHHh-cC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATIEELEGSAIDL-HELNSLLRRIGANI-AG 286 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il~~l~~~~~~~-~~~~~~~~~l~~~l-~~ 286 (583)
+-|.++|++|+|||+++..+... .. .+ ..+.++++...+...++..+-..+....... .. +-.-. .|
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~--l~-~~-~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~-------~~~p~~~G 1373 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRA--FP-DF-EVVSLNFSSATTPELLLKTFDHHCEYKRTPSGET-------VLRPTQLG 1373 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGG--CT-TE-EEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCE-------EEEESSTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHh--CC-CC-ceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCc-------ccCCCcCC
Confidence 35679999999999998877653 21 22 2456778887777666665543332111000 00 00001 27
Q ss_pred CceeEEEcCCCcccccc------hHhhHHhhccC------------CCCceEEEecCchH------H-HhhhcCCCeEEc
Q 036323 287 QKFFMVLDNLWTDDYRK------WEPFRNCLMNG------------LRGSKILITTRKET------V-ARMMESTDIVYV 341 (583)
Q Consensus 287 k~~LlVlDdv~~~~~~~------~~~l~~~l~~~------------~~gs~IlvTtR~~~------v-~~~~~~~~~~~l 341 (583)
|+.++++||+.-...+. .+.|+..+..+ ..+..+|.|...+. + .+.......+.+
T Consensus 1374 k~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~vi~i 1453 (3245)
T 3vkg_A 1374 KWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPILLV 1453 (3245)
T ss_dssp CEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCEEEC
T ss_pred ceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceEEEe
Confidence 78899999995433321 22233332211 12333444432221 1 112233567888
Q ss_pred CCCChHHHHHHHHHH
Q 036323 342 QGLSELECWSLFRRF 356 (583)
Q Consensus 342 ~~L~~~ea~~Lf~~~ 356 (583)
...+.++-..+|...
T Consensus 1454 ~~ps~esL~~If~ti 1468 (3245)
T 3vkg_A 1454 DFPSTSSLTQIYGTF 1468 (3245)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 888888888877654
No 473
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.82 E-value=0.29 Score=43.66 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..-|+|+|.+|+|||||...+...
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999854
No 474
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=88.82 E-value=0.25 Score=47.37 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.9
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...|+|+|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999998764
No 475
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=88.81 E-value=0.28 Score=43.93 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=21.5
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..--|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999998865
No 476
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=88.81 E-value=0.3 Score=43.81 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|+|+|.+|+|||||...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 445789999999999999998764
No 477
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=88.80 E-value=0.25 Score=44.48 Aligned_cols=24 Identities=29% Similarity=0.486 Sum_probs=20.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|+|+|.+|+|||||...+...
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 445789999999999999998764
No 478
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=88.79 E-value=0.3 Score=50.81 Aligned_cols=40 Identities=25% Similarity=0.230 Sum_probs=27.5
Q ss_pred ceEEEEEEecCCchHHHHH-HHHHcCccccccCc-eEEEEEeCCCC
Q 036323 207 TVQIISMVGMGGIGKTTLA-QLAYNDNDVINNFE-IRVRVCVSDPF 250 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~f~-~~~wv~~~~~~ 250 (583)
+..-++|.|.+|+|||+|| ..+.+.. .-+ .++++-+.+..
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~ 203 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKA 203 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCH
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCc
Confidence 3456789999999999996 5777742 234 34666666653
No 479
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.74 E-value=0.22 Score=44.78 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=20.8
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|+|+|.+|+|||||+..+.+.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 446789999999999999998864
No 480
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.72 E-value=0.22 Score=45.49 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=20.7
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..-|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999998764
No 481
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=88.65 E-value=0.77 Score=54.45 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHc
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYN 230 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~ 230 (583)
...|+|+|..|+|||||++.+++
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTT
T ss_pred CCEEEEECCCCChHHHHHHHHhc
Confidence 45799999999999999999876
No 482
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.64 E-value=0.27 Score=43.93 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.1
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...-|+|+|.+|+|||||...+...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3456889999999999999998754
No 483
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.63 E-value=0.28 Score=44.10 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=20.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 345789999999999999998764
No 484
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=88.60 E-value=0.2 Score=46.21 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.0
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCc
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDN 232 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 232 (583)
....|+|+|.+|+|||||...+....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34577899999999999999998753
No 485
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=88.58 E-value=0.22 Score=45.49 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.5
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|+|+|.+|+|||||+..+.+.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 446789999999999999988764
No 486
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.57 E-value=0.19 Score=50.53 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.8
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.+++|+|+.|+|||||++.+...
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 48999999999999999999873
No 487
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=88.48 E-value=0.23 Score=45.06 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=20.6
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..-|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346789999999999999998764
No 488
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=88.44 E-value=0.49 Score=49.85 Aligned_cols=49 Identities=14% Similarity=0.128 Sum_probs=34.8
Q ss_pred HHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCC
Q 036323 191 SIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDP 249 (583)
Q Consensus 191 ~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~ 249 (583)
+.++.|..- .+..-++|.|..|+|||+|+..+.+.. +-+.++++-+.+.
T Consensus 221 rvID~l~Pi------grGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER 269 (600)
T 3vr4_A 221 RVIDTFFPV------TKGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGER 269 (600)
T ss_dssp HHHHHHSCC------BTTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEEC
T ss_pred hhhhccCCc------cCCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEeccc
Confidence 455666433 345578899999999999999998742 2356777777655
No 489
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=88.42 E-value=0.18 Score=45.21 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=20.4
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.--|+|+|.+|+|||||...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999998764
No 490
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=88.35 E-value=0.31 Score=46.85 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=21.0
Q ss_pred eEEEEEEecCCchHHHHHHHHHcC
Q 036323 208 VQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 208 ~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
...|+|+|.+|+|||||...+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 356889999999999999999864
No 491
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=88.25 E-value=0.32 Score=44.17 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.3
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..--|+|+|.+|+|||||+..+...
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhhC
Confidence 3556889999999999999998764
No 492
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=88.25 E-value=0.14 Score=45.45 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=10.7
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..--|+|+|.+|+|||||+..+.+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456889999999999999888754
No 493
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=88.23 E-value=1.2 Score=50.32 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=19.9
Q ss_pred ceEEEEEEecCCchHHHHHHHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLA 228 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v 228 (583)
...+++|+|+.|.||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3578999999999999999988
No 494
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=88.11 E-value=0.25 Score=49.49 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.+++|+|.+|+|||||.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 37899999999999999999873
No 495
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=88.06 E-value=0.26 Score=44.97 Aligned_cols=23 Identities=22% Similarity=0.124 Sum_probs=21.1
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
.+|.|.|+.|+||||+++.+...
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~ 29 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEH 29 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHH
Confidence 58999999999999999999873
No 496
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=88.04 E-value=0.24 Score=45.57 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=19.9
Q ss_pred EEEEEEecCCchHHHHHHHHHcC
Q 036323 209 QIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 209 ~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
--|+|+|.+|+|||||...+...
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45679999999999999998764
No 497
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=88.04 E-value=0.25 Score=45.28 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=21.2
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
..--|+|+|.+|+|||||...+...
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcC
Confidence 3456789999999999999998864
No 498
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=87.97 E-value=0.34 Score=47.38 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.8
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcC
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYND 231 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~ 231 (583)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999998764
No 499
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=87.91 E-value=0.86 Score=42.29 Aligned_cols=107 Identities=14% Similarity=0.053 Sum_probs=51.6
Q ss_pred ceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCC-CCChHHHHHHHHHHhhcCcc--ccccHHHHHHHHHHH
Q 036323 207 TVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSD-PFDEFNVAKATIEELEGSAI--DLHELNSLLRRIGAN 283 (583)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~l~~~ 283 (583)
...+..++|.-|.||||-+.....+.. .......++-..-+ ... . .+.+.++.... ...+..++...+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~-~~g~kvli~kp~~D~Ryg-~----~i~sr~G~~~~a~~i~~~~di~~~~--- 88 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ-IAQYKCLVIKYAKDTRYS-S----SFCTHDRNTMEALPACLLRDVAQEA--- 88 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH-TTTCCEEEEEETTCCCC----------------CEEEEESSGGGGHHHH---
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH-HCCCeEEEEeecCCccch-H----HHHhhcCCeeEEEecCCHHHHHHHh---
Confidence 356889999999999977755544221 22233333332221 122 2 34444432211 011112222222
Q ss_pred hcCCceeEEEcCCCcccccchHhhHHhhccCCCCceEEEecCchH
Q 036323 284 IAGQKFFMVLDNLWTDDYRKWEPFRNCLMNGLRGSKILITTRKET 328 (583)
Q Consensus 284 l~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~ 328 (583)
++--+|++|.+.--. ...++...+.. .|..||+|.++.+
T Consensus 89 --~~~dvViIDEaQF~~--~v~el~~~l~~--~gi~VI~~GL~~D 127 (234)
T 2orv_A 89 --LGVAVIGIDEGQFFP--DIVEFCEAMAN--AGKTVIVAALDGT 127 (234)
T ss_dssp --TTCSEEEESSGGGCT--THHHHHHHHHH--TTCEEEEECCSBC
T ss_pred --ccCCEEEEEchhhhh--hHHHHHHHHHh--CCCEEEEEecccc
Confidence 233499999985432 24445554544 5778999998743
No 500
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=87.89 E-value=0.42 Score=52.16 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=35.6
Q ss_pred hHHHHHHHHhhcCCCCCCCCceEEEEEEecCCchHHHHHHHHHcCccccccCceEEEEEeCCCCChHHHHHHHH
Q 036323 187 EEMRSIKSMLLCQGSDQQTNTVQIISMVGMGGIGKTTLAQLAYNDNDVINNFEIRVRVCVSDPFDEFNVAKATI 260 (583)
Q Consensus 187 ~e~~~l~~~L~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~il 260 (583)
...+.+...|... .+..|+|+||+|||+.+.++... .+.. ...+.++......+..++..+.
T Consensus 193 ~Q~~AV~~al~~~---------~~~lI~GPPGTGKT~ti~~~I~~-l~~~--~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 193 SQKEAVLFALSQK---------ELAIIHGPPGTGKTTTVVEIILQ-AVKQ--GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHHCS---------SEEEEECCTTSCHHHHHHHHHHH-HHHT--TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC---------CceEEECCCCCCHHHHHHHHHHH-HHhC--CCeEEEEcCchHHHHHHHHHHH
Confidence 4556666666432 26789999999999655443321 1222 2356666655545555555543
Done!