Query 036324
Match_columns 91
No_of_seqs 103 out of 223
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 19:50:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036324.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036324hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tc3_C Protein (TC3 transposas 96.4 0.0065 2.2E-07 31.5 4.3 40 44-84 5-44 (51)
2 2fmy_A COOA, carbon monoxide o 96.0 0.0089 3E-07 40.2 4.5 77 4-86 102-192 (220)
3 3dv8_A Transcriptional regulat 96.0 0.0099 3.4E-07 39.7 4.6 77 4-86 111-194 (220)
4 3ryp_A Catabolite gene activat 95.8 0.012 4E-07 39.0 4.4 77 4-86 103-192 (210)
5 2oz6_A Virulence factor regula 95.7 0.017 5.9E-07 38.1 4.8 77 4-86 100-189 (207)
6 2jpc_A SSRB; DNA binding prote 95.6 0.022 7.6E-07 31.5 4.5 36 53-89 6-41 (61)
7 1zyb_A Transcription regulator 95.6 0.032 1.1E-06 37.9 6.2 77 4-86 127-211 (232)
8 3fx3_A Cyclic nucleotide-bindi 95.6 0.042 1.4E-06 37.1 6.8 76 4-85 117-202 (237)
9 3la7_A Global nitrogen regulat 95.6 0.036 1.2E-06 38.0 6.3 77 4-86 128-218 (243)
10 1ft9_A Carbon monoxide oxidati 95.6 0.016 5.5E-07 39.0 4.4 77 4-86 98-188 (222)
11 1fse_A GERE; helix-turn-helix 95.5 0.04 1.4E-06 31.3 5.4 45 43-89 10-54 (74)
12 1j1v_A Chromosomal replication 95.5 0.014 4.9E-07 36.5 3.6 47 42-88 27-74 (94)
13 1jhg_A Trp operon repressor; c 95.5 0.024 8.1E-07 36.3 4.7 44 44-88 35-84 (101)
14 3e6c_C CPRK, cyclic nucleotide 95.4 0.033 1.1E-06 38.2 5.6 77 4-86 112-202 (250)
15 3iwz_A CAP-like, catabolite ac 95.3 0.036 1.2E-06 37.1 5.5 77 4-86 118-212 (230)
16 3dkw_A DNR protein; CRP-FNR, H 95.2 0.053 1.8E-06 36.2 6.0 78 4-87 116-204 (227)
17 2x48_A CAG38821; archeal virus 95.1 0.023 7.8E-07 31.0 3.4 36 47-83 18-53 (55)
18 3d0s_A Transcriptional regulat 95.1 0.035 1.2E-06 37.3 5.0 77 4-86 112-202 (227)
19 4ev0_A Transcription regulator 95.1 0.025 8.4E-07 37.6 4.1 77 4-86 105-188 (216)
20 3e97_A Transcriptional regulat 95.0 0.025 8.6E-07 38.1 4.0 75 4-86 112-200 (231)
21 2o8x_A Probable RNA polymerase 94.9 0.061 2.1E-06 30.2 5.0 45 44-89 15-59 (70)
22 2bgc_A PRFA; bacterial infecti 94.8 0.049 1.7E-06 37.1 5.1 77 4-86 103-195 (238)
23 3kcc_A Catabolite gene activat 94.8 0.039 1.3E-06 38.4 4.6 77 4-86 153-242 (260)
24 3c57_A Two component transcrip 94.8 0.064 2.2E-06 32.8 5.0 44 44-89 27-70 (95)
25 1jko_C HIN recombinase, DNA-in 94.7 0.035 1.2E-06 29.1 3.4 26 58-83 18-43 (52)
26 1pdn_C Protein (PRD paired); p 94.7 0.053 1.8E-06 33.2 4.7 43 42-85 15-57 (128)
27 1x3u_A Transcriptional regulat 94.7 0.061 2.1E-06 31.0 4.7 43 45-89 17-59 (79)
28 1je8_A Nitrate/nitrite respons 94.7 0.06 2E-06 32.0 4.7 44 44-89 21-64 (82)
29 3pvv_A Chromosomal replication 94.4 0.054 1.8E-06 34.4 4.2 47 42-88 31-77 (101)
30 1u78_A TC3 transposase, transp 94.3 0.065 2.2E-06 33.7 4.5 41 43-84 5-45 (141)
31 2gau_A Transcriptional regulat 94.2 0.079 2.7E-06 35.6 5.0 77 4-86 116-205 (232)
32 1u78_A TC3 transposase, transp 94.1 0.48 1.6E-05 29.5 8.3 75 10-84 23-102 (141)
33 1k78_A Paired box protein PAX5 94.1 0.097 3.3E-06 33.7 5.0 43 42-85 30-72 (149)
34 2p7v_B Sigma-70, RNA polymeras 94.1 0.11 3.7E-06 29.5 4.7 45 45-89 6-53 (68)
35 2rnj_A Response regulator prot 94.0 0.076 2.6E-06 31.9 4.2 44 44-89 29-72 (91)
36 1o5l_A Transcriptional regulat 93.7 0.02 6.7E-07 38.5 1.1 76 4-85 106-188 (213)
37 2jn6_A Protein CGL2762, transp 93.4 0.12 4.1E-06 31.2 4.3 42 43-84 4-46 (97)
38 1tty_A Sigma-A, RNA polymerase 93.3 0.21 7.3E-06 29.7 5.3 46 44-89 18-66 (87)
39 3hug_A RNA polymerase sigma fa 93.0 0.21 7.2E-06 29.9 5.0 44 45-89 38-81 (92)
40 1s7o_A Hypothetical UPF0122 pr 93.0 0.19 6.5E-06 32.0 4.9 44 45-89 23-66 (113)
41 1p4w_A RCSB; solution structur 92.8 0.26 8.8E-06 30.7 5.2 46 42-89 32-77 (99)
42 3ulq_B Transcriptional regulat 92.7 0.24 8.4E-06 30.1 4.9 44 44-89 29-72 (90)
43 1ku3_A Sigma factor SIGA; heli 92.7 0.28 9.5E-06 28.1 5.0 46 44-89 10-58 (73)
44 3b02_A Transcriptional regulat 92.5 0.54 1.8E-05 30.8 6.9 44 43-86 108-164 (195)
45 2zcw_A TTHA1359, transcription 92.4 0.18 6.1E-06 33.2 4.4 43 44-86 116-171 (202)
46 2k27_A Paired box protein PAX- 92.3 0.15 5.2E-06 33.2 3.9 41 42-83 23-63 (159)
47 2glo_A Brinker CG9653-PA; prot 92.3 0.15 5E-06 28.4 3.3 40 44-84 5-48 (59)
48 2jrt_A Uncharacterized protein 92.2 0.34 1.2E-05 30.3 5.2 45 42-86 30-74 (95)
49 1xsv_A Hypothetical UPF0122 pr 92.0 0.34 1.2E-05 30.6 5.2 44 45-89 26-69 (113)
50 2lkp_A Transcriptional regulat 92.0 0.7 2.4E-05 28.4 6.6 59 20-87 13-71 (119)
51 3dn7_A Cyclic nucleotide bindi 91.8 0.036 1.2E-06 36.3 0.4 76 4-85 114-192 (194)
52 1iuf_A Centromere ABP1 protein 91.1 0.15 5.1E-06 33.4 2.8 42 43-84 10-59 (144)
53 2elh_A CG11849-PA, LD40883P; s 91.0 0.43 1.5E-05 28.5 4.6 41 44-85 22-62 (87)
54 1hlv_A CENP-B, major centromer 90.9 0.41 1.4E-05 29.9 4.7 42 43-84 6-48 (131)
55 2w7n_A TRFB transcriptional re 90.8 0.55 1.9E-05 29.8 5.2 58 20-88 4-61 (101)
56 2oa4_A SIR5; structure, struct 90.4 0.96 3.3E-05 28.7 6.0 51 36-86 23-75 (101)
57 3cuo_A Uncharacterized HTH-typ 90.0 0.38 1.3E-05 28.3 3.8 39 49-87 25-64 (99)
58 3t72_q RNA polymerase sigma fa 89.6 0.74 2.5E-05 28.7 5.0 46 44-89 19-67 (99)
59 1pdn_C Protein (PRD paired); p 89.5 1.3 4.6E-05 26.6 6.1 73 11-84 35-126 (128)
60 1r1u_A CZRA, repressor protein 89.5 1.7 5.9E-05 26.3 6.7 58 21-87 8-65 (106)
61 1k78_A Paired box protein PAX5 89.5 2.8 9.4E-05 26.6 8.7 77 10-86 49-143 (149)
62 2p5k_A Arginine repressor; DNA 89.4 0.65 2.2E-05 25.5 4.2 36 49-84 5-47 (64)
63 1y0u_A Arsenical resistance op 89.3 0.53 1.8E-05 28.2 4.1 36 51-87 34-69 (96)
64 3frw_A Putative Trp repressor 89.0 0.39 1.3E-05 31.0 3.4 26 58-83 55-80 (107)
65 2l0k_A Stage III sporulation p 88.8 0.42 1.4E-05 29.8 3.4 32 53-84 12-43 (93)
66 3qp6_A CVIR transcriptional re 88.7 2 6.9E-05 30.5 7.4 45 43-89 196-240 (265)
67 2d1h_A ST1889, 109AA long hypo 88.6 0.8 2.7E-05 27.0 4.5 29 59-87 34-62 (109)
68 1l8q_A Chromosomal replication 88.4 0.75 2.6E-05 32.8 4.9 48 40-87 252-300 (324)
69 1rp3_A RNA polymerase sigma fa 87.6 1.3 4.5E-05 29.5 5.6 45 44-89 187-231 (239)
70 2q0o_A Probable transcriptiona 87.3 3.3 0.00011 28.4 7.6 46 42-89 173-218 (236)
71 3jth_A Transcription activator 87.3 0.62 2.1E-05 27.8 3.4 38 50-87 25-62 (98)
72 3f6o_A Probable transcriptiona 87.1 0.89 3E-05 28.3 4.2 39 49-87 19-57 (118)
73 3szt_A QCSR, quorum-sensing co 86.9 1.7 5.8E-05 30.1 6.0 47 41-89 172-218 (237)
74 1ku9_A Hypothetical protein MJ 86.7 2.3 8E-05 26.1 6.0 40 47-86 27-66 (152)
75 3pqk_A Biofilm growth-associat 86.6 0.99 3.4E-05 27.1 4.1 38 50-87 25-62 (102)
76 2oqg_A Possible transcriptiona 86.5 1.2 4E-05 26.9 4.4 36 52-87 25-60 (114)
77 3kor_A Possible Trp repressor; 86.5 0.41 1.4E-05 31.5 2.3 28 56-83 70-97 (119)
78 3mzy_A RNA polymerase sigma-H 86.3 1.3 4.6E-05 27.6 4.8 36 53-89 117-152 (164)
79 2kko_A Possible transcriptiona 86.3 0.85 2.9E-05 28.0 3.7 29 59-87 36-64 (108)
80 2pij_A Prophage PFL 6 CRO; tra 86.1 0.73 2.5E-05 25.4 3.1 30 53-83 6-35 (67)
81 2zkz_A Transcriptional repress 86.0 0.44 1.5E-05 28.9 2.3 41 48-88 27-68 (99)
82 1wy3_A Villin; structural prot 85.7 0.52 1.8E-05 24.6 2.1 24 11-34 2-25 (35)
83 1zx4_A P1 PARB, plasmid partit 85.6 1.3 4.5E-05 31.0 4.8 43 42-84 5-47 (192)
84 2rn7_A IS629 ORFA; helix, all 85.5 0.74 2.5E-05 28.0 3.1 42 44-85 6-54 (108)
85 2jt1_A PEFI protein; solution 85.5 1.5 5E-05 26.2 4.4 28 59-86 22-49 (77)
86 1u2w_A CADC repressor, cadmium 85.1 1.1 3.6E-05 28.2 3.8 38 50-87 44-82 (122)
87 1q1h_A TFE, transcription fact 84.7 1.9 6.4E-05 26.2 4.7 33 55-87 27-59 (110)
88 1und_A Advillin, P92; actin bi 84.7 0.62 2.1E-05 24.6 2.1 23 11-33 4-26 (37)
89 1r1t_A Transcriptional repress 84.7 1.3 4.3E-05 28.0 4.0 59 20-87 27-85 (122)
90 2htj_A P fimbrial regulatory p 84.6 1.5 5E-05 25.5 4.0 28 60-87 13-40 (81)
91 1a04_A Nitrate/nitrite respons 84.5 1.1 3.7E-05 29.5 3.8 35 55-89 163-197 (215)
92 1ub9_A Hypothetical protein PH 84.4 1.3 4.3E-05 25.9 3.7 39 49-87 17-56 (100)
93 3r0a_A Putative transcriptiona 84.4 1.2 4.1E-05 28.1 3.8 40 48-87 28-68 (123)
94 3clo_A Transcriptional regulat 83.5 1.9 6.6E-05 30.1 5.0 45 43-89 196-240 (258)
95 1l3l_A Transcriptional activat 83.5 2.4 8.2E-05 29.1 5.4 45 43-89 172-216 (234)
96 2jsc_A Transcriptional regulat 83.1 1.3 4.5E-05 27.6 3.6 35 51-85 24-58 (118)
97 2x4h_A Hypothetical protein SS 82.9 2 6.9E-05 26.7 4.5 40 47-86 14-56 (139)
98 3ech_A MEXR, multidrug resista 82.9 4.6 0.00016 24.9 6.1 70 11-87 6-77 (142)
99 2k27_A Paired box protein PAX- 82.7 3.1 0.00011 26.7 5.4 76 10-85 42-135 (159)
100 2gxg_A 146AA long hypothetical 82.6 4.3 0.00015 24.9 5.9 36 50-87 41-76 (146)
101 3f6v_A Possible transcriptiona 82.1 1.8 6.2E-05 28.5 4.1 41 48-88 58-98 (151)
102 3nrv_A Putative transcriptiona 81.5 6.9 0.00024 24.1 6.6 43 44-87 37-80 (148)
103 2heo_A Z-DNA binding protein 1 81.4 2.7 9.2E-05 23.9 4.2 40 47-86 11-50 (67)
104 1uxc_A FRUR (1-57), fructose r 81.3 0.85 2.9E-05 26.3 2.0 21 63-83 2-22 (65)
105 3kjx_A Transcriptional regulat 81.2 0.67 2.3E-05 32.9 1.8 23 62-84 11-33 (344)
106 1or7_A Sigma-24, RNA polymeras 81.2 3.3 0.00011 26.7 5.2 42 47-89 143-184 (194)
107 3c3w_A Two component transcrip 80.9 1.6 5.4E-05 29.2 3.6 43 45-89 150-192 (225)
108 2bv6_A MGRA, HTH-type transcri 80.6 3 0.0001 25.6 4.6 66 14-87 10-77 (142)
109 2frh_A SARA, staphylococcal ac 80.5 3.6 0.00012 25.5 4.9 69 12-86 9-78 (127)
110 3bja_A Transcriptional regulat 80.4 3.9 0.00013 24.8 5.1 28 60-87 46-73 (139)
111 1sfx_A Conserved hypothetical 79.8 4.1 0.00014 23.6 4.9 55 26-87 6-60 (109)
112 2q1z_A RPOE, ECF SIGE; ECF sig 79.4 2.5 8.7E-05 27.1 4.1 44 45-89 136-179 (184)
113 2qvo_A Uncharacterized protein 79.3 2.9 0.0001 24.7 4.1 25 62-86 31-55 (95)
114 1yio_A Response regulatory pro 79.3 2 6.9E-05 27.9 3.6 35 55-89 151-185 (208)
115 3boq_A Transcriptional regulat 79.2 3.1 0.00011 26.2 4.4 68 14-87 20-88 (160)
116 2nnn_A Probable transcriptiona 78.6 6 0.0002 24.0 5.5 42 44-86 35-77 (140)
117 1on2_A Transcriptional regulat 78.0 3.7 0.00013 25.6 4.5 39 48-86 7-47 (142)
118 1p6r_A Penicillinase repressor 77.9 2.4 8.4E-05 24.3 3.3 41 46-87 9-53 (82)
119 3tgn_A ADC operon repressor AD 77.6 3.2 0.00011 25.6 4.0 42 44-86 35-76 (146)
120 2pex_A Transcriptional regulat 77.2 5.1 0.00018 25.0 5.0 29 59-87 59-87 (153)
121 4hbl_A Transcriptional regulat 77.1 11 0.00037 23.5 6.6 65 15-87 16-81 (149)
122 3f3x_A Transcriptional regulat 77.0 3.4 0.00012 25.6 4.0 65 16-87 12-76 (144)
123 2hsg_A Glucose-resistance amyl 76.7 1.1 3.6E-05 31.7 1.7 23 62-84 3-25 (332)
124 3k0l_A Repressor protein; heli 76.4 9.6 0.00033 24.1 6.2 65 15-87 21-86 (162)
125 2fbi_A Probable transcriptiona 76.1 5.5 0.00019 24.2 4.8 28 60-87 49-76 (142)
126 3bpv_A Transcriptional regulat 76.0 5.6 0.00019 24.1 4.8 29 59-87 41-69 (138)
127 3eco_A MEPR; mutlidrug efflux 75.9 3.5 0.00012 25.3 3.8 39 49-87 34-73 (139)
128 3hot_A Transposable element ma 75.8 12 0.0004 26.5 7.1 61 21-84 41-109 (345)
129 3klo_A Transcriptional regulat 75.2 1.7 5.7E-05 29.0 2.3 34 55-88 168-201 (225)
130 1z91_A Organic hydroperoxide r 75.0 6.1 0.00021 24.3 4.8 28 60-87 53-80 (147)
131 3kp7_A Transcriptional regulat 74.5 5.1 0.00018 25.0 4.4 41 45-86 36-76 (151)
132 1qgp_A Protein (double strande 74.4 6.4 0.00022 23.0 4.6 39 48-86 16-56 (77)
133 2l8n_A Transcriptional repress 74.4 0.88 3E-05 26.3 0.6 22 62-83 10-31 (67)
134 2fbk_A Transcriptional regulat 74.3 8.2 0.00028 25.0 5.5 67 15-87 44-112 (181)
135 3fm5_A Transcriptional regulat 74.2 11 0.00036 23.4 5.9 33 54-86 47-79 (150)
136 3h5t_A Transcriptional regulat 74.2 1.4 4.7E-05 31.6 1.7 22 62-83 10-31 (366)
137 2a6h_F RNA polymerase sigma fa 73.9 4.8 0.00017 30.7 4.8 43 47-89 363-408 (423)
138 1qzp_A Dematin; villin headpie 73.8 1.9 6.5E-05 25.5 2.0 24 11-34 35-58 (68)
139 3bdd_A Regulatory protein MARR 73.6 7.3 0.00025 23.6 4.9 28 60-87 44-71 (142)
140 3fzv_A Probable transcriptiona 73.6 3.3 0.00011 28.0 3.5 36 49-85 7-42 (306)
141 1l9z_H Sigma factor SIGA; heli 73.4 5.3 0.00018 31.0 5.0 45 45-89 376-423 (438)
142 2fu4_A Ferric uptake regulatio 73.1 7.3 0.00025 22.2 4.6 39 49-87 18-64 (83)
143 3u2r_A Regulatory protein MARR 73.1 9.6 0.00033 24.2 5.6 67 13-86 19-87 (168)
144 1fx7_A Iron-dependent represso 73.0 4.7 0.00016 27.8 4.2 42 45-86 5-49 (230)
145 2rdp_A Putative transcriptiona 73.0 7.5 0.00026 23.9 4.9 28 60-87 55-82 (150)
146 3cta_A Riboflavin kinase; stru 72.4 3.7 0.00013 28.2 3.6 40 46-85 5-51 (230)
147 2h09_A Transcriptional regulat 72.4 5.6 0.00019 25.2 4.3 28 59-86 52-79 (155)
148 1okr_A MECI, methicillin resis 72.3 5.4 0.00019 24.1 4.0 39 48-87 12-54 (123)
149 2xi8_A Putative transcription 72.2 2.4 8.4E-05 22.6 2.2 27 57-83 10-36 (66)
150 3g3z_A NMB1585, transcriptiona 72.1 13 0.00045 22.7 5.9 26 61-86 45-70 (145)
151 2pg4_A Uncharacterized protein 72.1 4.5 0.00015 23.8 3.5 27 61-87 30-57 (95)
152 4dyq_A Gene 1 protein; GP1, oc 72.0 4.7 0.00016 26.0 3.9 36 49-84 16-52 (140)
153 3bro_A Transcriptional regulat 71.9 6.4 0.00022 23.9 4.3 37 51-87 39-76 (141)
154 2a61_A Transcriptional regulat 71.9 8.1 0.00028 23.6 4.8 29 59-87 45-73 (145)
155 1ixc_A CBNR, LYSR-type regulat 71.7 4.3 0.00015 27.2 3.8 38 49-87 4-41 (294)
156 3nqo_A MARR-family transcripti 71.7 7.8 0.00027 25.5 5.0 42 45-86 39-82 (189)
157 3h5o_A Transcriptional regulat 71.4 0.82 2.8E-05 32.4 0.0 24 61-84 4-27 (339)
158 1jgs_A Multiple antibiotic res 71.4 8.7 0.0003 23.3 4.9 28 60-87 47-74 (138)
159 1tbx_A ORF F-93, hypothetical 71.2 8.4 0.00029 22.5 4.6 27 61-87 22-52 (99)
160 3oop_A LIN2960 protein; protei 71.0 7.7 0.00026 23.8 4.6 43 44-87 34-77 (143)
161 1lj9_A Transcriptional regulat 70.9 5.9 0.0002 24.2 4.0 27 61-87 43-69 (144)
162 3u1d_A Uncharacterized protein 70.7 7.5 0.00026 26.1 4.7 40 49-88 30-73 (151)
163 2fe3_A Peroxide operon regulat 70.5 14 0.00048 23.7 5.9 55 29-87 9-68 (145)
164 2fbh_A Transcriptional regulat 70.4 6.4 0.00022 24.0 4.1 37 51-87 42-78 (146)
165 4aik_A Transcriptional regulat 70.4 5.3 0.00018 25.6 3.8 42 45-86 29-71 (151)
166 3deu_A Transcriptional regulat 70.3 4.6 0.00016 26.1 3.5 44 44-87 50-94 (166)
167 3hhg_A Transcriptional regulat 70.3 5.6 0.00019 26.8 4.1 37 49-86 6-42 (306)
168 2w48_A Sorbitol operon regulat 70.0 3.9 0.00013 29.5 3.4 26 60-85 20-45 (315)
169 1yu8_X Villin; alpha helix, 3- 69.8 2.1 7.3E-05 25.3 1.6 24 11-34 34-57 (67)
170 2eth_A Transcriptional regulat 69.7 8.5 0.00029 24.0 4.7 43 44-87 41-84 (154)
171 1mkm_A ICLR transcriptional re 69.6 8.2 0.00028 26.8 4.9 41 46-86 6-48 (249)
172 2cob_A LCOR protein; MLR2, KIA 69.5 8.1 0.00028 23.0 4.1 39 46-84 14-53 (70)
173 2fa5_A Transcriptional regulat 69.3 9.4 0.00032 23.9 4.8 66 15-87 23-89 (162)
174 3cjn_A Transcriptional regulat 69.1 8.3 0.00028 24.2 4.5 29 59-87 64-92 (162)
175 1zug_A Phage 434 CRO protein; 69.1 3.1 0.00011 22.5 2.2 27 57-83 12-38 (71)
176 3ctp_A Periplasmic binding pro 68.9 1 3.4E-05 31.8 0.0 22 63-84 4-25 (330)
177 1s3j_A YUSO protein; structura 68.7 7.4 0.00025 24.1 4.2 28 60-87 50-77 (155)
178 2o20_A Catabolite control prot 68.7 1 3.5E-05 31.8 0.0 23 62-84 6-28 (332)
179 2hku_A A putative transcriptio 68.6 5.3 0.00018 25.8 3.5 37 46-83 25-61 (215)
180 2hr3_A Probable transcriptiona 68.5 17 0.00059 22.1 6.9 29 59-87 48-76 (147)
181 1r69_A Repressor protein CI; g 68.5 3.3 0.00011 22.3 2.2 27 57-83 10-36 (69)
182 2qww_A Transcriptional regulat 68.4 16 0.00056 22.5 5.8 42 45-87 39-81 (154)
183 3iyd_F RNA polymerase sigma fa 67.9 5.4 0.00019 31.7 4.1 46 44-89 550-598 (613)
184 3bj6_A Transcriptional regulat 67.9 9.2 0.00031 23.6 4.5 27 60-86 53-79 (152)
185 1vz0_A PARB, chromosome partit 67.8 7.6 0.00026 27.2 4.5 40 44-83 117-156 (230)
186 1oyi_A Double-stranded RNA-bin 67.6 5.1 0.00017 24.4 3.0 39 46-86 17-55 (82)
187 1r71_A Transcriptional repress 67.6 6.8 0.00023 26.7 4.0 38 45-83 37-74 (178)
188 3bil_A Probable LACI-family tr 67.6 1.1 3.8E-05 32.0 0.0 23 62-84 9-31 (348)
189 2zcm_A Biofilm operon icaabcd 67.4 5.3 0.00018 25.3 3.3 35 49-83 15-49 (192)
190 2ijl_A AGR_C_4647P, molybdenum 67.4 7.2 0.00025 25.4 4.0 37 49-86 27-63 (135)
191 2k6m_S Supervillin; SVHP, HP, 67.3 2 6.8E-05 25.4 1.1 23 11-33 34-56 (67)
192 1v4r_A Transcriptional repress 67.3 2.2 7.4E-05 25.8 1.3 22 63-84 37-58 (102)
193 3o9x_A Uncharacterized HTH-typ 67.2 2.7 9.2E-05 26.3 1.8 28 56-83 79-106 (133)
194 3hsr_A HTH-type transcriptiona 67.2 9.1 0.00031 23.6 4.3 64 15-86 11-75 (140)
195 2r1j_L Repressor protein C2; p 67.1 3.1 0.0001 22.3 1.8 26 58-83 15-40 (68)
196 1l0o_C Sigma factor; bergerat 66.8 1.2 4E-05 29.7 0.0 45 44-89 198-242 (243)
197 1jye_A Lactose operon represso 66.8 1.2 4E-05 31.9 0.0 23 62-84 4-26 (349)
198 1ui5_A A-factor receptor homol 66.7 4.2 0.00014 26.7 2.8 42 49-90 17-61 (215)
199 3oou_A LIN2118 protein; protei 66.7 11 0.00037 22.5 4.5 29 58-86 18-46 (108)
200 1qbj_A Protein (double-strande 66.7 11 0.00039 22.3 4.5 40 47-86 11-52 (81)
201 3dbi_A Sugar-binding transcrip 66.6 1.2 4.1E-05 31.5 0.0 23 62-84 4-26 (338)
202 3jvd_A Transcriptional regulat 66.5 1.2 4.1E-05 31.7 0.0 22 62-83 7-28 (333)
203 2lfw_A PHYR sigma-like domain; 66.3 5.4 0.00019 25.5 3.2 45 44-89 93-137 (157)
204 3jw4_A Transcriptional regulat 66.3 7.1 0.00024 24.2 3.7 38 50-87 45-83 (148)
205 3on4_A Transcriptional regulat 66.1 4.4 0.00015 25.3 2.7 37 47-83 16-52 (191)
206 2esn_A Probable transcriptiona 65.9 5.8 0.0002 27.0 3.4 38 49-87 13-50 (310)
207 3cdh_A Transcriptional regulat 65.7 19 0.00063 22.3 5.6 26 61-86 57-82 (155)
208 3mn2_A Probable ARAC family tr 65.5 11 0.00036 22.5 4.3 27 59-85 16-42 (108)
209 3p7n_A Sensor histidine kinase 65.5 10 0.00035 25.2 4.6 37 53-89 205-241 (258)
210 1j5y_A Transcriptional regulat 65.3 9.5 0.00032 25.4 4.4 27 61-87 36-62 (187)
211 4b8x_A SCO5413, possible MARR- 65.3 16 0.00053 23.0 5.3 65 15-86 10-76 (147)
212 3e3m_A Transcriptional regulat 65.3 1.3 4.5E-05 31.6 0.0 22 62-83 13-34 (355)
213 3fmy_A HTH-type transcriptiona 65.2 4.3 0.00015 22.9 2.3 27 56-82 19-45 (73)
214 1lmb_3 Protein (lambda repress 64.9 6.6 0.00023 22.5 3.1 27 57-83 26-52 (92)
215 2hin_A GP39, repressor protein 64.9 6.2 0.00021 23.1 3.0 21 63-83 12-32 (71)
216 2d6y_A Putative TETR family re 64.7 7.8 0.00027 25.0 3.8 36 48-83 15-50 (202)
217 2wiu_B HTH-type transcriptiona 64.4 5.4 0.00019 22.6 2.7 27 57-83 21-47 (88)
218 3fxq_A LYSR type regulator of 64.2 8.2 0.00028 26.3 4.0 38 49-87 5-42 (305)
219 3bd1_A CRO protein; transcript 64.2 4 0.00014 23.1 2.0 24 59-83 10-33 (79)
220 3df8_A Possible HXLR family tr 64.2 12 0.0004 23.0 4.3 32 56-87 34-69 (111)
221 2b5a_A C.BCLI; helix-turn-heli 64.1 4.4 0.00015 22.3 2.1 27 57-83 19-45 (77)
222 2ek5_A Predicted transcription 64.1 12 0.00039 23.8 4.4 22 63-84 30-51 (129)
223 3e6m_A MARR family transcripti 63.9 11 0.00039 23.7 4.4 36 51-87 58-93 (161)
224 2a6c_A Helix-turn-helix motif; 63.9 4.3 0.00015 23.3 2.2 27 57-83 27-53 (83)
225 1y7y_A C.AHDI; helix-turn-heli 63.3 5.1 0.00017 21.8 2.3 26 58-83 23-48 (74)
226 3omt_A Uncharacterized protein 63.3 4.4 0.00015 22.4 2.1 26 58-83 18-43 (73)
227 3uj3_X DNA-invertase; helix-tu 63.2 1.5 5.1E-05 29.4 0.0 26 59-84 156-181 (193)
228 3b7h_A Prophage LP1 protein 11 63.2 5.1 0.00017 22.1 2.3 26 58-83 17-42 (78)
229 3kz3_A Repressor protein CI; f 63.2 3.4 0.00012 23.4 1.6 25 59-83 23-47 (80)
230 3bs3_A Putative DNA-binding pr 62.6 4.9 0.00017 22.1 2.1 26 58-83 20-45 (76)
231 3mky_B Protein SOPB; partition 62.6 11 0.00037 26.4 4.3 42 43-84 22-65 (189)
232 1adr_A P22 C2 repressor; trans 62.5 4.1 0.00014 22.3 1.8 26 58-83 15-40 (76)
233 2v57_A TETR family transcripti 62.3 3.4 0.00012 26.0 1.6 35 47-83 20-54 (190)
234 2qq9_A Diphtheria toxin repres 62.2 8.1 0.00028 26.5 3.7 41 46-86 6-49 (226)
235 2jj7_A Hemolysin II regulatory 62.2 6.7 0.00023 24.6 3.0 33 51-83 17-49 (186)
236 3vpr_A Transcriptional regulat 62.1 8.4 0.00029 24.3 3.5 33 51-83 13-45 (190)
237 4aci_A HTH-type transcriptiona 62.0 6.8 0.00023 24.6 3.0 37 47-83 20-56 (191)
238 1xn7_A Hypothetical protein YH 61.8 6.1 0.00021 23.4 2.6 25 61-85 16-40 (78)
239 2k9s_A Arabinose operon regula 61.8 13 0.00044 22.1 4.2 25 61-85 20-44 (107)
240 3knw_A Putative transcriptiona 61.7 6 0.00021 25.1 2.7 34 50-83 23-56 (212)
241 2nyx_A Probable transcriptiona 61.3 15 0.0005 23.4 4.6 66 15-86 18-84 (168)
242 2cw1_A SN4M; lambda CRO fold, 61.1 8.6 0.00029 22.0 3.1 22 62-83 14-35 (65)
243 3bqz_B HTH-type transcriptiona 61.1 9 0.00031 23.9 3.5 33 51-83 12-44 (194)
244 4ham_A LMO2241 protein; struct 60.8 9.9 0.00034 24.0 3.7 23 63-85 40-62 (134)
245 1rzs_A Antirepressor, regulato 60.8 2.3 7.8E-05 23.6 0.5 22 61-82 10-31 (61)
246 3c2b_A Transcriptional regulat 60.7 8.8 0.0003 24.6 3.5 36 48-83 22-57 (221)
247 2i10_A Putative TETR transcrip 60.7 10 0.00035 24.4 3.8 37 47-83 17-53 (202)
248 2qlz_A Transcription factor PF 60.7 7.2 0.00025 27.6 3.2 38 51-88 15-52 (232)
249 3bhq_A Transcriptional regulat 60.5 9.2 0.00031 24.6 3.5 36 48-83 19-54 (211)
250 2g9w_A Conserved hypothetical 60.2 10 0.00034 23.9 3.6 40 47-86 10-53 (138)
251 2p4w_A Transcriptional regulat 60.1 10 0.00035 26.0 3.9 38 50-87 17-54 (202)
252 2b0l_A GTP-sensing transcripti 60.0 5.5 0.00019 24.5 2.2 23 63-85 45-67 (102)
253 3s2w_A Transcriptional regulat 60.0 11 0.00037 23.7 3.7 28 60-87 63-90 (159)
254 1t33_A Putative transcriptiona 60.0 11 0.00038 24.2 3.8 34 49-83 20-53 (224)
255 3dew_A Transcriptional regulat 59.9 6.9 0.00024 24.5 2.8 36 48-83 15-50 (206)
256 3lsg_A Two-component response 59.8 19 0.00066 21.1 4.7 25 61-85 19-43 (103)
257 3hot_A Transposable element ma 59.8 11 0.00039 26.6 4.2 39 47-85 8-53 (345)
258 2cyy_A Putative HTH-type trans 59.8 15 0.0005 23.3 4.4 27 61-87 21-47 (151)
259 3dpj_A Transcription regulator 59.7 7.2 0.00024 24.5 2.8 33 51-83 18-50 (194)
260 3loc_A HTH-type transcriptiona 59.3 5.8 0.0002 25.1 2.3 37 47-83 24-60 (212)
261 2qtq_A Transcriptional regulat 59.2 11 0.00038 23.8 3.7 35 49-83 24-58 (213)
262 1ujs_A Actin-binding LIM prote 59.2 2.9 0.0001 26.0 0.8 23 11-33 49-71 (88)
263 2k9q_A Uncharacterized protein 59.0 5.6 0.00019 22.2 2.0 27 57-83 11-37 (77)
264 2cfx_A HTH-type transcriptiona 58.9 13 0.00043 23.5 3.9 28 60-87 18-45 (144)
265 1i1g_A Transcriptional regulat 58.9 8.3 0.00028 24.0 3.0 28 60-87 17-44 (141)
266 2ict_A Antitoxin HIGA; helix-t 58.6 6.6 0.00023 22.8 2.3 37 45-83 7-43 (94)
267 3eus_A DNA-binding protein; st 58.6 7.4 0.00025 22.4 2.5 26 57-82 23-48 (86)
268 3by6_A Predicted transcription 58.4 30 0.001 21.6 5.6 23 63-85 37-59 (126)
269 1pb6_A Hypothetical transcript 58.4 8.9 0.0003 24.3 3.1 34 50-83 27-60 (212)
270 3gzi_A Transcriptional regulat 58.3 5.3 0.00018 25.6 2.0 24 60-83 36-59 (218)
271 4hku_A LMO2814 protein, TETR t 58.1 5.7 0.0002 25.2 2.2 37 47-83 13-49 (178)
272 2fq4_A Transcriptional regulat 58.0 7.9 0.00027 24.6 2.8 34 50-83 21-54 (192)
273 1ais_B TFB TFIIB, protein (tra 58.0 37 0.0013 22.4 8.6 76 14-89 18-97 (200)
274 2dbb_A Putative HTH-type trans 57.6 9.9 0.00034 24.0 3.3 28 60-87 22-49 (151)
275 2pn6_A ST1022, 150AA long hypo 57.6 7.5 0.00026 24.6 2.6 27 61-87 17-43 (150)
276 1p2f_A Response regulator; DRR 57.4 9.4 0.00032 24.9 3.2 35 55-89 154-195 (220)
277 1b4a_A Arginine repressor; hel 57.1 11 0.00037 25.1 3.4 35 50-84 6-47 (149)
278 2zb9_A Putative transcriptiona 57.1 7.8 0.00027 24.9 2.7 34 50-83 32-65 (214)
279 2opt_A Actii protein; helical 57.0 10 0.00035 25.9 3.5 34 50-83 15-48 (234)
280 2fxa_A Protease production reg 57.0 23 0.00078 23.8 5.2 41 45-86 46-87 (207)
281 2ewt_A BLDD, putative DNA-bind 57.0 10 0.00036 20.4 2.9 26 58-83 18-45 (71)
282 3ljl_A Transcriptional regulat 56.9 5.6 0.00019 24.8 1.9 34 50-83 23-56 (156)
283 3isp_A HTH-type transcriptiona 56.8 7.6 0.00026 26.3 2.7 36 49-85 9-44 (303)
284 2ppx_A AGR_C_3184P, uncharacte 56.5 7.3 0.00025 23.0 2.3 27 56-82 38-64 (99)
285 2id3_A Putative transcriptiona 56.5 11 0.00038 24.6 3.5 35 49-83 48-82 (225)
286 4g6q_A Putative uncharacterize 56.5 14 0.00048 24.7 4.0 39 50-88 25-64 (182)
287 3qq6_A HTH-type transcriptiona 56.5 7.7 0.00026 22.0 2.3 28 56-83 18-45 (78)
288 3b81_A Transcriptional regulat 56.5 5.7 0.00019 25.1 1.9 34 50-83 20-53 (203)
289 3col_A Putative transcription 56.5 5.6 0.00019 24.8 1.9 36 48-83 17-52 (196)
290 2nx4_A Transcriptional regulat 56.4 8.6 0.00029 24.5 2.8 36 48-83 17-52 (194)
291 2g7s_A Transcriptional regulat 56.4 8.4 0.00029 23.9 2.7 34 50-83 17-50 (194)
292 3frq_A Repressor protein MPHR( 56.2 9.6 0.00033 24.0 3.0 35 49-83 16-50 (195)
293 2rae_A Transcriptional regulat 56.1 9.9 0.00034 24.1 3.1 33 51-83 27-59 (207)
294 2ef8_A C.ECOT38IS, putative tr 56.1 7.9 0.00027 21.6 2.3 26 58-83 20-45 (84)
295 2kpj_A SOS-response transcript 56.0 6.7 0.00023 22.9 2.0 26 58-83 19-44 (94)
296 2dg7_A Putative transcriptiona 56.0 7.5 0.00026 24.6 2.5 24 60-83 26-49 (195)
297 2w25_A Probable transcriptiona 55.9 16 0.00055 23.1 4.0 27 61-87 21-47 (150)
298 3f0c_A TETR-molecule A, transc 55.9 8.8 0.0003 24.5 2.8 37 47-83 17-53 (216)
299 3kz9_A SMCR; transcriptional r 55.9 7.1 0.00024 24.5 2.3 24 60-83 36-59 (206)
300 3qkx_A Uncharacterized HTH-typ 55.9 7.4 0.00025 24.1 2.4 24 60-83 27-50 (188)
301 3lwj_A Putative TETR-family tr 55.8 9.1 0.00031 24.1 2.8 24 60-83 31-54 (202)
302 3szp_A Transcriptional regulat 55.8 7.3 0.00025 25.8 2.4 35 50-85 5-39 (291)
303 3qbm_A TETR transcriptional re 55.7 6 0.0002 24.8 1.9 34 50-83 16-49 (199)
304 3s8q_A R-M controller protein; 55.7 8 0.00027 21.7 2.3 27 57-83 20-46 (82)
305 2p5v_A Transcriptional regulat 55.7 16 0.00053 23.5 4.0 27 61-87 24-50 (162)
306 3pas_A TETR family transcripti 55.7 7.1 0.00024 24.3 2.2 34 50-83 17-50 (195)
307 1sd4_A Penicillinase repressor 55.7 14 0.00046 22.3 3.5 39 47-86 11-53 (126)
308 3rh2_A Hypothetical TETR-like 55.6 8.5 0.00029 24.7 2.7 35 49-83 11-45 (212)
309 2gen_A Probable transcriptiona 55.6 10 0.00035 24.2 3.1 37 47-83 13-49 (197)
310 3s5r_A Transcriptional regulat 55.5 11 0.00037 24.0 3.1 36 48-83 17-52 (216)
311 3vib_A MTRR; helix-turn-helix 55.4 9.1 0.00031 24.5 2.8 36 48-83 17-52 (210)
312 2ibd_A Possible transcriptiona 55.4 9.8 0.00034 24.3 3.0 34 50-83 23-56 (204)
313 3bjb_A Probable transcriptiona 55.3 6.9 0.00024 25.4 2.2 35 49-83 30-64 (207)
314 2wui_A MEXZ, transcriptional r 55.3 7.4 0.00025 25.1 2.4 36 48-83 18-53 (210)
315 2pz9_A Putative regulatory pro 55.3 7.7 0.00026 25.4 2.5 37 47-83 36-72 (226)
316 3lhq_A Acrab operon repressor 55.2 9.1 0.00031 24.2 2.7 34 50-83 23-56 (220)
317 1z7u_A Hypothetical protein EF 55.1 25 0.00086 21.2 4.7 28 60-87 34-62 (112)
318 2xrn_A HTH-type transcriptiona 54.9 14 0.00047 25.5 3.9 41 46-86 4-46 (241)
319 3egq_A TETR family transcripti 54.9 4.2 0.00014 25.2 1.0 24 60-83 23-46 (170)
320 2hyt_A TETR-family transcripti 54.9 13 0.00045 23.6 3.5 33 51-83 22-54 (197)
321 2fd5_A Transcriptional regulat 54.8 8.3 0.00028 24.0 2.5 34 50-83 16-49 (180)
322 3jsj_A Putative TETR-family tr 54.4 9.4 0.00032 23.9 2.7 35 48-83 16-50 (190)
323 2l49_A C protein; P2 bacteriop 54.3 8.5 0.00029 22.3 2.3 27 57-83 13-39 (99)
324 3ppb_A Putative TETR family tr 54.2 8.4 0.00029 23.9 2.4 24 60-83 28-51 (195)
325 2ovg_A Phage lambda CRO; trans 54.2 5.9 0.0002 22.7 1.5 21 63-83 15-35 (66)
326 2gqq_A Leucine-responsive regu 54.1 10 0.00035 24.5 2.9 39 46-85 13-51 (163)
327 3k2z_A LEXA repressor; winged 54.1 21 0.00072 23.7 4.6 27 59-85 22-48 (196)
328 2cg4_A Regulatory protein ASNC 53.9 11 0.00038 23.9 3.0 27 61-87 22-48 (152)
329 3cwr_A Transcriptional regulat 53.9 9.6 0.00033 23.9 2.7 34 50-83 26-59 (208)
330 3f6w_A XRE-family like protein 53.8 7.7 0.00026 21.8 2.0 27 57-83 23-49 (83)
331 3cjd_A Transcriptional regulat 53.6 9.6 0.00033 24.5 2.7 37 47-83 18-54 (198)
332 3cec_A Putative antidote prote 53.5 6.9 0.00023 23.2 1.8 38 44-83 16-53 (104)
333 2di3_A Bacterial regulatory pr 53.5 25 0.00085 23.9 4.9 42 25-83 9-50 (239)
334 3mnl_A KSTR, transcriptional r 53.3 8 0.00027 24.3 2.2 24 60-83 39-62 (203)
335 2rek_A Putative TETR-family tr 53.2 11 0.00038 23.8 2.9 33 50-83 25-57 (199)
336 3crj_A Transcription regulator 53.2 7.7 0.00026 25.0 2.2 36 48-83 21-56 (199)
337 2k02_A Ferrous iron transport 53.2 8.8 0.0003 23.4 2.3 25 61-85 16-40 (87)
338 3f1b_A TETR-like transcription 53.1 12 0.00041 23.4 3.0 24 60-83 33-56 (203)
339 3eup_A Transcriptional regulat 52.9 5.2 0.00018 25.2 1.3 37 47-83 17-53 (204)
340 1bia_A BIRA bifunctional prote 52.9 15 0.00053 26.6 4.0 25 62-86 20-44 (321)
341 3kkc_A TETR family transcripti 52.9 3.1 0.00011 25.9 0.2 23 61-83 32-54 (177)
342 2xdn_A HTH-type transcriptiona 52.8 10 0.00034 24.4 2.7 34 50-83 20-53 (210)
343 3cdl_A Transcriptional regulat 52.6 8.4 0.00029 24.7 2.3 36 48-83 16-51 (203)
344 2ras_A Transcriptional regulat 52.6 7 0.00024 25.0 1.9 34 50-83 20-53 (212)
345 2eh3_A Transcriptional regulat 52.5 11 0.00037 23.6 2.7 33 51-83 12-44 (179)
346 3mvp_A TETR/ACRR transcription 52.4 10 0.00036 24.0 2.7 35 49-83 34-68 (217)
347 3npi_A TETR family regulatory 52.2 12 0.0004 24.9 3.0 37 47-83 24-60 (251)
348 3bqy_A Putative TETR family tr 52.2 10 0.00035 25.2 2.7 24 60-83 21-44 (209)
349 2dg8_A Putative TETR-family tr 52.1 11 0.00036 23.9 2.7 33 51-83 19-51 (193)
350 3oio_A Transcriptional regulat 51.9 13 0.00046 22.3 3.0 25 61-85 23-47 (113)
351 2auw_A Hypothetical protein NE 51.7 8.8 0.0003 26.2 2.3 28 54-81 96-123 (170)
352 2r0q_C Putative transposon TN5 51.6 12 0.0004 25.3 2.9 26 59-84 173-198 (209)
353 1sgm_A Putative HTH-type trans 51.6 8.3 0.00028 23.9 2.1 34 51-84 16-49 (191)
354 2hqr_A Putative transcriptiona 51.5 13 0.00044 24.3 3.1 35 55-89 152-195 (223)
355 2f07_A YVDT; helix-turn-helix, 51.4 12 0.0004 24.0 2.8 36 48-83 17-52 (197)
356 3bni_A Putative TETR-family tr 51.4 11 0.00039 24.7 2.8 32 52-83 54-85 (229)
357 2g7u_A Transcriptional regulat 51.2 21 0.00072 24.8 4.3 40 46-86 12-54 (257)
358 3tqn_A Transcriptional regulat 51.1 9.3 0.00032 23.5 2.2 23 63-85 35-57 (113)
359 1vi0_A Transcriptional regulat 51.1 11 0.00038 24.3 2.7 36 48-83 15-50 (206)
360 2oi8_A Putative regulatory pro 51.0 8.8 0.0003 25.3 2.2 33 51-83 26-58 (216)
361 3vp5_A Transcriptional regulat 50.8 9.7 0.00033 24.3 2.4 24 60-83 31-54 (189)
362 2xpw_A Tetracycline repressor 50.6 9 0.00031 25.4 2.2 34 50-83 12-45 (207)
363 2yve_A Transcriptional regulat 50.6 9.6 0.00033 24.2 2.3 24 60-83 23-46 (185)
364 2hzt_A Putative HTH-type trans 50.6 26 0.0009 20.9 4.3 27 60-86 26-53 (107)
365 3hrs_A Metalloregulator SCAR; 50.5 17 0.00058 24.7 3.7 40 47-86 3-45 (214)
366 2np5_A Transcriptional regulat 50.3 12 0.0004 24.1 2.7 35 49-83 17-51 (203)
367 3bru_A Regulatory protein, TET 50.3 10 0.00034 24.3 2.4 24 60-83 49-72 (222)
368 1p4x_A Staphylococcal accessor 50.2 34 0.0011 24.1 5.3 67 13-86 131-199 (250)
369 3anp_C Transcriptional repress 50.2 13 0.00043 23.7 2.8 33 51-83 19-51 (204)
370 1b0n_A Protein (SINR protein); 50.1 11 0.00037 22.2 2.3 27 57-83 10-36 (111)
371 2o5h_A Hypothetical protein; a 50.1 12 0.00041 25.0 2.7 39 19-57 48-91 (136)
372 2eby_A Putative HTH-type trans 50.0 8.3 0.00029 23.1 1.8 27 57-83 20-46 (113)
373 1uly_A Hypothetical protein PH 50.0 17 0.0006 24.5 3.6 28 60-87 32-59 (192)
374 3b73_A PHIH1 repressor-like pr 50.0 30 0.001 21.6 4.6 40 47-87 14-55 (111)
375 2gfn_A HTH-type transcriptiona 49.9 13 0.00046 24.0 3.0 35 49-83 17-51 (209)
376 2fbq_A Probable transcriptiona 49.8 13 0.00046 24.5 3.0 35 49-83 15-49 (235)
377 1gdt_A GD resolvase, protein ( 49.7 14 0.00048 24.3 3.0 30 53-83 151-180 (183)
378 2g7g_A RHA04620, putative tran 49.4 9.5 0.00033 25.3 2.2 34 48-83 18-51 (213)
379 1j9i_A GPNU1 DBD;, terminase s 49.3 8.5 0.00029 21.5 1.7 22 62-83 3-24 (68)
380 1bl0_A Protein (multiple antib 49.1 22 0.00074 21.9 3.8 25 61-85 27-51 (129)
381 1hsj_A Fusion protein consisti 49.0 13 0.00046 27.5 3.2 74 5-85 369-444 (487)
382 1al3_A Cys regulon transcripti 49.0 3.6 0.00012 28.6 0.0 36 50-85 5-40 (324)
383 3fiw_A Putative TETR-family tr 48.6 8.5 0.00029 25.6 1.8 36 48-83 32-67 (211)
384 1zk8_A Transcriptional regulat 48.6 8 0.00027 24.1 1.6 34 50-83 17-50 (183)
385 3dcf_A Transcriptional regulat 48.5 12 0.00041 23.7 2.5 24 60-83 50-73 (218)
386 2w53_A Repressor, SMet; antibi 48.5 9.3 0.00032 24.7 2.0 37 47-83 17-53 (219)
387 1hw1_A FADR, fatty acid metabo 48.5 33 0.0011 23.0 4.9 44 24-84 11-54 (239)
388 3kxa_A NGO0477 protein, putati 48.5 14 0.00049 23.6 2.9 28 56-83 76-103 (141)
389 1kgs_A DRRD, DNA binding respo 48.4 15 0.00051 23.8 3.0 35 55-89 160-203 (225)
390 3hta_A EBRA repressor; TETR fa 48.4 14 0.00047 24.1 2.9 34 50-83 37-70 (217)
391 1xmk_A Double-stranded RNA-spe 48.4 22 0.00074 21.2 3.5 39 46-85 11-50 (79)
392 2q24_A Putative TETR family tr 48.3 15 0.00051 23.2 2.9 34 49-83 23-56 (194)
393 4ghj_A Probable transcriptiona 48.2 12 0.0004 23.0 2.3 37 45-81 31-69 (101)
394 3nrg_A TETR family transcripti 48.2 6.8 0.00023 25.0 1.3 35 49-83 21-55 (217)
395 2oqr_A Sensory transduction pr 48.2 15 0.0005 24.0 3.0 28 62-89 176-208 (230)
396 3q0w_A HTH-type transcriptiona 48.1 10 0.00036 24.9 2.2 35 49-83 52-86 (236)
397 2o7t_A Transcriptional regulat 48.0 11 0.00037 24.0 2.2 24 60-83 27-50 (199)
398 2iu5_A DHAS, YCEG, HTH-type dh 47.9 4.3 0.00015 25.9 0.3 24 60-83 32-55 (195)
399 3neu_A LIN1836 protein; struct 47.9 13 0.00045 23.2 2.6 23 63-85 39-61 (125)
400 3aqt_A Bacterial regulatory pr 47.9 10 0.00035 25.3 2.2 24 60-83 65-88 (245)
401 3him_A Probable transcriptiona 47.7 6.4 0.00022 24.8 1.1 33 51-83 26-58 (211)
402 1b9m_A Protein (mode); DNA-bin 47.6 27 0.00092 23.9 4.4 41 48-89 22-62 (265)
403 3go5_A Multidomain protein wit 47.6 18 0.00063 26.3 3.6 28 10-37 246-273 (285)
404 3e7q_A Transcriptional regulat 47.6 11 0.00038 23.7 2.2 34 50-83 23-56 (215)
405 2g3b_A Putative TETR-family tr 47.5 16 0.00053 23.7 3.0 32 52-83 14-45 (208)
406 1x57_A Endothelial differentia 47.5 15 0.00052 21.0 2.7 37 45-83 12-48 (91)
407 2hyj_A Putative TETR-family tr 47.4 9.3 0.00032 24.6 1.8 35 49-83 20-54 (200)
408 3g7r_A Putative transcriptiona 47.3 14 0.00048 24.0 2.8 33 51-83 45-77 (221)
409 2qwt_A Transcriptional regulat 47.2 14 0.00047 23.6 2.7 25 59-83 30-54 (196)
410 3geu_A Intercellular adhesion 47.1 7.8 0.00027 24.3 1.4 24 60-83 22-45 (189)
411 2guh_A Putative TETR-family tr 47.0 16 0.00054 23.9 3.0 31 60-90 58-91 (214)
412 2v79_A DNA replication protein 46.9 45 0.0015 21.3 5.2 26 62-87 52-77 (135)
413 3he0_A Transcriptional regulat 46.7 10 0.00036 23.6 2.0 38 46-83 16-53 (196)
414 2zcx_A SCO7815, TETR-family tr 46.6 14 0.00049 24.5 2.7 33 51-83 33-65 (231)
415 3rd3_A Probable transcriptiona 46.6 9.2 0.00031 23.8 1.7 34 50-83 19-52 (197)
416 2g7l_A TETR-family transcripti 46.4 9.9 0.00034 26.0 2.0 37 47-83 25-61 (243)
417 1rkt_A Protein YFIR; transcrip 46.4 10 0.00035 24.3 1.9 35 49-83 20-54 (205)
418 1ys7_A Transcriptional regulat 46.4 16 0.00054 23.8 2.9 36 54-89 167-211 (233)
419 3nxc_A HTH-type protein SLMA; 46.3 5.1 0.00018 25.5 0.4 24 60-83 44-67 (212)
420 3trb_A Virulence-associated pr 46.2 12 0.00042 22.8 2.2 39 44-83 11-49 (104)
421 2id6_A Transcriptional regulat 46.0 17 0.00059 23.1 3.0 34 50-83 14-47 (202)
422 3op9_A PLI0006 protein; struct 45.9 14 0.00047 22.2 2.4 28 56-83 17-44 (114)
423 2qko_A Possible transcriptiona 45.8 13 0.00043 23.9 2.3 24 60-83 47-70 (215)
424 3o60_A LIN0861 protein; PSI, M 45.6 7.7 0.00026 25.2 1.2 24 60-83 39-62 (185)
425 3mkl_A HTH-type transcriptiona 45.6 22 0.00076 21.5 3.4 24 61-84 23-46 (120)
426 4fx0_A Probable transcriptiona 45.5 47 0.0016 20.8 5.0 67 12-85 5-76 (148)
427 2k4b_A Transcriptional regulat 45.4 25 0.00085 21.4 3.5 41 46-87 35-79 (99)
428 2dk5_A DNA-directed RNA polyme 45.1 23 0.00078 21.3 3.3 41 44-85 17-60 (91)
429 2of7_A Putative TETR-family tr 45.0 15 0.00053 24.7 2.7 35 50-84 57-91 (260)
430 3kkd_A Transcriptional regulat 45.0 12 0.0004 24.6 2.1 36 48-83 42-77 (237)
431 2ia2_A Putative transcriptiona 44.9 17 0.00059 25.4 3.0 41 46-86 19-61 (265)
432 3v6g_A Probable transcriptiona 44.8 17 0.00057 23.8 2.8 36 48-83 21-56 (208)
433 1ic8_A Hepatocyte nuclear fact 44.4 15 0.00053 25.4 2.7 26 58-83 40-65 (194)
434 2vn2_A DNAD, chromosome replic 44.4 38 0.0013 21.1 4.4 26 62-87 52-77 (128)
435 3edp_A LIN2111 protein; APC883 44.3 48 0.0016 22.8 5.3 33 37-85 25-57 (236)
436 2wv0_A YVOA, HTH-type transcri 44.3 48 0.0017 22.8 5.3 22 64-85 37-58 (243)
437 2y2z_A SIM16, SIMR, putative r 44.2 11 0.00039 26.3 2.0 39 45-83 27-69 (267)
438 2xvc_A ESCRT-III, SSO0910; cel 44.2 27 0.00093 20.0 3.3 29 12-40 28-56 (59)
439 1z4h_A TORI, TOR inhibition pr 44.1 14 0.00048 20.6 2.1 22 63-84 12-33 (66)
440 2e1c_A Putative HTH-type trans 44.1 15 0.00051 24.2 2.5 27 61-87 41-67 (171)
441 3ccy_A Putative TETR-family tr 44.1 10 0.00035 24.2 1.6 34 50-83 23-56 (203)
442 3nnr_A Transcriptional regulat 44.0 16 0.00056 23.6 2.7 34 50-83 14-47 (228)
443 1z0x_A Transcriptional regulat 44.0 9 0.00031 25.5 1.4 24 60-83 25-48 (220)
444 2vpr_A Tetracycline resistance 43.7 8.3 0.00028 25.7 1.2 36 48-83 11-46 (207)
445 3lsj_A DEST; transcriptional r 43.5 4.8 0.00016 26.0 -0.1 24 60-83 31-54 (220)
446 2oer_A Probable transcriptiona 43.4 10 0.00035 24.6 1.6 34 50-83 33-66 (214)
447 2f2e_A PA1607; transcription f 43.2 36 0.0012 21.7 4.2 28 60-87 36-63 (146)
448 3t76_A VANU, transcriptional r 43.1 16 0.00055 21.7 2.3 28 56-83 32-59 (88)
449 2hxi_A Putative transcriptiona 42.9 11 0.00038 25.7 1.7 40 44-83 28-71 (241)
450 3mz1_A Putative transcriptiona 42.8 5.1 0.00018 26.6 0.0 35 50-85 2-36 (300)
451 3i4p_A Transcriptional regulat 42.8 16 0.00056 23.6 2.5 26 62-87 18-43 (162)
452 2o0y_A Transcriptional regulat 42.7 17 0.00059 25.3 2.8 41 46-86 21-63 (260)
453 2hxo_A Putative TETR-family tr 42.6 12 0.00042 25.3 1.9 34 50-83 25-58 (237)
454 3mlf_A Transcriptional regulat 42.6 16 0.00055 22.2 2.3 28 56-83 31-58 (111)
455 2iai_A Putative transcriptiona 42.5 12 0.0004 24.6 1.8 38 46-83 35-72 (230)
456 2gwr_A DNA-binding response re 42.2 25 0.00084 23.3 3.4 43 45-89 154-205 (238)
457 2ia0_A Putative HTH-type trans 42.0 34 0.0012 22.4 4.0 27 61-87 31-57 (171)
458 3ivp_A Putative transposon-rel 41.8 20 0.00067 21.9 2.7 28 56-83 20-47 (126)
459 3f52_A CLP gene regulator (CLG 41.5 37 0.0013 20.2 3.9 40 44-83 22-63 (117)
460 2o3f_A Putative HTH-type trans 41.4 26 0.0009 21.6 3.2 38 45-84 20-62 (111)
461 3g5g_A Regulatory protein; tra 41.4 18 0.0006 21.6 2.3 37 47-83 25-63 (99)
462 3rqi_A Response regulator prot 41.4 30 0.001 21.9 3.6 27 58-84 153-179 (184)
463 2fsw_A PG_0823 protein; alpha- 41.3 39 0.0013 20.1 4.0 29 59-87 36-65 (107)
464 2qib_A TETR-family transcripti 40.3 16 0.00056 23.9 2.2 24 60-83 32-55 (231)
465 3vk0_A NHTF, transcriptional r 40.3 18 0.00063 21.8 2.3 37 46-82 17-55 (114)
466 3plo_X DNA-invertase; resolvas 40.2 5.9 0.0002 26.5 0.0 29 59-87 156-184 (193)
467 3eet_A Putative GNTR-family tr 40.0 70 0.0024 22.5 5.7 21 65-85 57-77 (272)
468 3on2_A Probable transcriptiona 39.8 7.4 0.00025 24.3 0.4 34 50-83 21-54 (199)
469 2y75_A HTH-type transcriptiona 39.7 61 0.0021 19.7 4.8 27 61-87 26-52 (129)
470 1yyv_A Putative transcriptiona 39.6 48 0.0016 20.8 4.3 33 55-87 41-75 (131)
471 1xwr_A Regulatory protein CII; 39.6 22 0.00076 22.0 2.6 31 49-80 12-42 (97)
472 1neq_A DNA-binding protein NER 39.4 13 0.00043 21.5 1.4 24 59-82 20-43 (74)
473 2jvl_A TRMBF1; coactivator, he 39.3 15 0.00053 22.1 1.8 24 59-82 47-70 (107)
474 4ac0_A Tetracycline repressor 39.1 12 0.00041 25.0 1.4 34 50-83 12-45 (202)
475 2p5t_A Putative transcriptiona 38.7 6.5 0.00022 25.4 0.0 24 59-82 12-35 (158)
476 1p4x_A Staphylococcal accessor 38.6 31 0.001 24.3 3.6 68 11-85 5-74 (250)
477 4ich_A Transcriptional regulat 38.5 21 0.00072 24.8 2.7 34 50-83 129-162 (311)
478 2np3_A Putative TETR-family re 38.3 5.1 0.00017 25.9 -0.6 37 47-83 36-72 (212)
479 3ic7_A Putative transcriptiona 38.0 15 0.00053 23.0 1.7 23 63-85 37-59 (126)
480 1ku1_A ARF guanine-nucleotide 37.9 68 0.0023 22.7 5.3 54 15-75 30-83 (230)
481 2wte_A CSA3; antiviral protein 37.8 56 0.0019 22.9 4.8 28 60-87 165-192 (244)
482 1jhf_A LEXA repressor; LEXA SO 37.6 61 0.0021 21.3 4.8 25 63-87 27-52 (202)
483 2o38_A Hypothetical protein; a 37.3 21 0.00073 22.2 2.3 28 56-83 48-75 (120)
484 3f8m_A GNTR-family protein tra 37.0 24 0.00084 24.5 2.8 23 63-85 38-60 (248)
485 4fe7_A Xylose operon regulator 36.6 58 0.002 23.5 4.9 29 57-85 317-345 (412)
486 2h9b_A HTH-type transcriptiona 36.2 7.5 0.00026 26.7 0.0 35 50-85 5-39 (312)
487 2fjr_A Repressor protein CI; g 36.0 71 0.0024 20.5 4.9 21 63-83 22-42 (189)
488 3c07_A Putative TETR-family tr 35.9 22 0.00076 24.4 2.4 24 60-83 60-83 (273)
489 2h98_A HTH-type transcriptiona 35.2 8 0.00027 26.8 0.0 35 50-85 5-39 (313)
490 1ntc_A Protein (nitrogen regul 35.2 59 0.002 19.0 4.0 24 61-84 64-87 (91)
491 1zs4_A Regulatory protein CII; 35.1 26 0.00089 21.3 2.3 32 49-81 13-44 (83)
492 1mzb_A Ferric uptake regulatio 34.9 82 0.0028 19.6 5.3 28 61-88 34-66 (136)
493 2p8t_A Hypothetical protein PH 34.8 43 0.0015 23.3 3.8 39 47-85 16-54 (200)
494 3g1o_A Transcriptional regulat 34.4 16 0.00053 24.4 1.4 24 60-83 62-85 (255)
495 2ofy_A Putative XRE-family tra 34.3 57 0.002 18.0 3.7 32 51-82 17-48 (86)
496 2z4s_A Chromosomal replication 33.8 8.7 0.0003 29.0 0.0 44 42-85 368-411 (440)
497 3bdn_A Lambda repressor; repre 32.8 20 0.00069 24.0 1.7 25 59-83 28-52 (236)
498 2qlz_A Transcription factor PF 32.6 37 0.0013 23.8 3.2 37 50-86 166-203 (232)
499 3ni7_A Bacterial regulatory pr 32.5 18 0.00062 23.8 1.5 24 60-83 26-49 (213)
500 1uth_A LYSR-type regulatory pr 32.1 9.6 0.00033 26.2 0.0 36 49-85 17-52 (315)
No 1
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=96.37 E-value=0.0065 Score=31.52 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=31.3
Q ss_pred CccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHH
Q 036324 44 TVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 44 ~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~ 84 (91)
.++.+++..+... ...+.+.+.|+..++.|..||+++++.
T Consensus 5 ~l~~~~~~~i~~~-~~~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVM-KLLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHH-HHTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 4566666555544 367899999999999999999998763
No 2
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=96.00 E-value=0.0089 Score=40.19 Aligned_cols=77 Identities=13% Similarity=0.043 Sum_probs=56.1
Q ss_pred hHHhhcCChhHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhhc--------------Ccchhhhhh
Q 036324 4 LSRSIIGSDIECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILAH--------------HVKSRTIHS 69 (91)
Q Consensus 4 l~~ll~~~~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~--------------~~~~r~i~~ 69 (91)
+.+++..+|.-....++.-..-+..+.+.+.. ...-++++++|-||..++. +.+..++++
T Consensus 102 ~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~------l~~~~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~ 175 (220)
T 2fmy_A 102 FQNIVVEFPAFSLNMVKVLGDLLKNSLTIING------LVFKDARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIAL 175 (220)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHH------HHTHHHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH------HHcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHH
Confidence 45566667766666666555555555554443 2246899999999998764 468899999
Q ss_pred ccccchhhHHHHHHHHH
Q 036324 70 RFLRSRETISRYFNLVL 86 (91)
Q Consensus 70 ~F~~S~eTisr~f~~Vl 86 (91)
..|.|++||||.+++.-
T Consensus 176 ~lg~sr~tvsR~l~~l~ 192 (220)
T 2fmy_A 176 MLGTTRQTVSVLLNDFK 192 (220)
T ss_dssp HHTSCHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHH
Confidence 99999999999998753
No 3
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=95.95 E-value=0.0099 Score=39.66 Aligned_cols=77 Identities=16% Similarity=0.107 Sum_probs=54.6
Q ss_pred hHHhhcCChhHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhhc-------Ccchhhhhhccccchh
Q 036324 4 LSRSIIGSDIECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILAH-------HVKSRTIHSRFLRSRE 76 (91)
Q Consensus 4 l~~ll~~~~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~-------~~~~r~i~~~F~~S~e 76 (91)
+.+++..+|.-.....+.-..-+..+.+.+.. ...-++++++|-||...+. +.+..++++..|.|++
T Consensus 111 ~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~------~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~ 184 (220)
T 3dv8_A 111 YKGIMKDSAPVANYTNELMATRFSDVMWLIEQ------IMWKSLDKRVASFLLEETSIEGTNELKITHETIANHLGSHRE 184 (220)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH------HHHSCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHHTCCHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH------HhcCCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHhCCCHH
Confidence 45566667766665554443333333333322 2246899999999999876 6789999999999999
Q ss_pred hHHHHHHHHH
Q 036324 77 TISRYFNLVL 86 (91)
Q Consensus 77 Tisr~f~~Vl 86 (91)
||||.+.+.-
T Consensus 185 tvsR~l~~L~ 194 (220)
T 3dv8_A 185 VITRMLRYFQ 194 (220)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 4
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=95.81 E-value=0.012 Score=39.03 Aligned_cols=77 Identities=14% Similarity=0.091 Sum_probs=52.3
Q ss_pred hHHhhcCChhHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhhcC-------------cchhhhhhc
Q 036324 4 LSRSIIGSDIECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILAHH-------------VKSRTIHSR 70 (91)
Q Consensus 4 l~~ll~~~~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~~-------------~~~r~i~~~ 70 (91)
+.+++..+|.-....++.-..-...+.+.+.. ....+++++||-||..++.. .+..++++.
T Consensus 103 ~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~------~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~ 176 (210)
T 3ryp_A 103 FRQLIQVNPDILMRLSAQMARRLQVTSEKVGN------LAFLDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQI 176 (210)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHH------HHHSCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHH
T ss_pred HHHHHHHChHHHHHHHHHHHHHHHHHHHHHHH------HhhCCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHH
Confidence 44556666665555544433333333333322 22467999999999988653 467899999
Q ss_pred cccchhhHHHHHHHHH
Q 036324 71 FLRSRETISRYFNLVL 86 (91)
Q Consensus 71 F~~S~eTisr~f~~Vl 86 (91)
.|-|++||||.+.+.-
T Consensus 177 lg~sr~tvsR~l~~L~ 192 (210)
T 3ryp_A 177 VGCSRETVGRILKMLE 192 (210)
T ss_dssp HTCCHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHH
Confidence 9999999999998754
No 5
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=95.66 E-value=0.017 Score=38.11 Aligned_cols=77 Identities=9% Similarity=-0.049 Sum_probs=52.1
Q ss_pred hHHhhcCChhHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhhc-------------Ccchhhhhhc
Q 036324 4 LSRSIIGSDIECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILAH-------------HVKSRTIHSR 70 (91)
Q Consensus 4 l~~ll~~~~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~-------------~~~~r~i~~~ 70 (91)
+.+++..+|.-....++.-..-+..+.+.+.. ...-++++++|-||..++. ..+..++++.
T Consensus 100 ~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~------l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~ 173 (207)
T 2oz6_A 100 FRELSQQDSEILYTLGSQMADRLRKTTRKVGD------LAFLDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRI 173 (207)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH------HHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH------HhcCCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHH
Confidence 34556666665555554433333333333332 2346789999999987765 2577899999
Q ss_pred cccchhhHHHHHHHHH
Q 036324 71 FLRSRETISRYFNLVL 86 (91)
Q Consensus 71 F~~S~eTisr~f~~Vl 86 (91)
.|.|++||||.+++.-
T Consensus 174 lg~sr~tvsR~l~~l~ 189 (207)
T 2oz6_A 174 VGCSREMVGRVLKSLE 189 (207)
T ss_dssp HTSCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHH
Confidence 9999999999998754
No 6
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=95.64 E-value=0.022 Score=31.49 Aligned_cols=36 Identities=8% Similarity=0.076 Sum_probs=31.0
Q ss_pred HHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 53 MFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 53 mFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
++.+ +..|.++..|+...+.|..||+.+.+.+.+.+
T Consensus 6 vl~l-~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 6 VLKL-IDEGYTNHGISEKLHISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHH-HHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred HHHH-HHcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3444 58899999999999999999999999887764
No 7
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=95.63 E-value=0.032 Score=37.94 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=51.9
Q ss_pred hHHhhcCChhHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhhcC--------cchhhhhhccccch
Q 036324 4 LSRSIIGSDIECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILAHH--------VKSRTIHSRFLRSR 75 (91)
Q Consensus 4 l~~ll~~~~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~~--------~~~r~i~~~F~~S~ 75 (91)
+.+++..+|.-....++.-..-+..+.+. +.....-++++++|-||..++.. .+..++++..|.|+
T Consensus 127 ~~~l~~~~p~~~~~l~~~l~~~l~~~~~~------~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr 200 (232)
T 1zyb_A 127 VLSDLFRYDIFRLNYMNIVSNRAQNLYSR------LWDEPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTR 200 (232)
T ss_dssp HHHTGGGSHHHHHHHHHHHHHHHHHHHHH------TTSCCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHHHH------HHHHhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCCh
Confidence 44556666665555544333322222222 23344678999999999987542 57899999999999
Q ss_pred hhHHHHHHHHH
Q 036324 76 ETISRYFNLVL 86 (91)
Q Consensus 76 eTisr~f~~Vl 86 (91)
+||||.+++.-
T Consensus 201 ~tvsR~l~~l~ 211 (232)
T 1zyb_A 201 LNISKTLNELQ 211 (232)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 99999998753
No 8
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=95.63 E-value=0.042 Score=37.12 Aligned_cols=76 Identities=17% Similarity=0.152 Sum_probs=54.2
Q ss_pred hHHhhcCChhHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhhcC----------cchhhhhhcccc
Q 036324 4 LSRSIIGSDIECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILAHH----------VKSRTIHSRFLR 73 (91)
Q Consensus 4 l~~ll~~~~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~~----------~~~r~i~~~F~~ 73 (91)
+.+++..+|.-....++.-..-+..+.+.+.. ...-+++++||-||..++.. .+...+++..|.
T Consensus 117 ~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~------l~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~lg~ 190 (237)
T 3fx3_A 117 FVSLMRRDPEICISILATTFGHLHSLVAQLEQ------LKAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRLGM 190 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH------CCCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHTTC
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH------HhcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHhCC
Confidence 45566666666665555544444444444443 23578999999999998642 457899999999
Q ss_pred chhhHHHHHHHH
Q 036324 74 SRETISRYFNLV 85 (91)
Q Consensus 74 S~eTisr~f~~V 85 (91)
|++||||.+.+.
T Consensus 191 sr~tvsR~l~~L 202 (237)
T 3fx3_A 191 KPESLSRAFSRL 202 (237)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999998864
No 9
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=95.57 E-value=0.036 Score=38.04 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=52.5
Q ss_pred hHHhhcCChhHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhhc--------------Ccchhhhhh
Q 036324 4 LSRSIIGSDIECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILAH--------------HVKSRTIHS 69 (91)
Q Consensus 4 l~~ll~~~~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~--------------~~~~r~i~~ 69 (91)
+.+++..+|.-....++.-..-...+.+.+.. ...-+++++||-||..++. ..+..++++
T Consensus 128 ~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~------l~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~ 201 (243)
T 3la7_A 128 VEQALKENPELSMLMLRGLSSRILQTEMMIET------LAHRDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAE 201 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH------HHCSSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH------HhcCCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHH
Confidence 45566666666655554433333333333322 2245789999999998753 357899999
Q ss_pred ccccchhhHHHHHHHHH
Q 036324 70 RFLRSRETISRYFNLVL 86 (91)
Q Consensus 70 ~F~~S~eTisr~f~~Vl 86 (91)
..|.|++||||.+.+.-
T Consensus 202 ~lG~sr~tvsR~l~~L~ 218 (243)
T 3la7_A 202 AIGSTRVTVTRLLGDLR 218 (243)
T ss_dssp HHTCCHHHHHHHHHHHH
T ss_pred HHCCcHHHHHHHHHHHH
Confidence 99999999999998754
No 10
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=95.57 E-value=0.016 Score=39.03 Aligned_cols=77 Identities=13% Similarity=0.062 Sum_probs=55.3
Q ss_pred hHHhhcCChhHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhhc--------------Ccchhhhhh
Q 036324 4 LSRSIIGSDIECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILAH--------------HVKSRTIHS 69 (91)
Q Consensus 4 l~~ll~~~~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~--------------~~~~r~i~~ 69 (91)
+.+++..+|.-....++.-..-+..+.+.+.. ...-+++++||-||..++. ..+...+++
T Consensus 98 ~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~------l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~ 171 (222)
T 1ft9_A 98 FEQKLQTCPSMAWGLIAILGRALTSCMRTIED------LMFHDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIAN 171 (222)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH------HHTHHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHH
T ss_pred HHHHHHHChHHHHHHHHHHHHHHHHHHHHHHH------HhcCCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHH
Confidence 45566667776666665555555555444443 2246899999999998763 257889999
Q ss_pred ccccchhhHHHHHHHHH
Q 036324 70 RFLRSRETISRYFNLVL 86 (91)
Q Consensus 70 ~F~~S~eTisr~f~~Vl 86 (91)
..|.|++||||.+++.-
T Consensus 172 ~lG~sr~tvsR~l~~L~ 188 (222)
T 1ft9_A 172 LIGSSRQTTSTALNSLI 188 (222)
T ss_dssp HHCSCHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHH
Confidence 99999999999998753
No 11
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=95.50 E-value=0.04 Score=31.27 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=36.3
Q ss_pred CCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 43 GTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 43 ~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
...+..|+-.+.+ +..+.++..|+..++.|..||+++++...+.+
T Consensus 10 ~~L~~~e~~il~~--~~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFEL--LVQDKTTKEIASELFISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHHH--HTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 4566666654444 38889999999999999999999999988765
No 12
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=95.47 E-value=0.014 Score=36.48 Aligned_cols=47 Identities=17% Similarity=0.101 Sum_probs=41.9
Q ss_pred CCCccHHHHHHHHHHHhhcCcchhhhhhcc-ccchhhHHHHHHHHHHH
Q 036324 42 DGTVSIEEQLCMFLHILAHHVKSRTIHSRF-LRSRETISRYFNLVLNA 88 (91)
Q Consensus 42 s~~v~veE~vamFL~i~~~~~~~r~i~~~F-~~S~eTisr~f~~Vl~a 88 (91)
++.+..--|+||+|-.--++.|...|+..| |++..||+.-.+.|=+.
T Consensus 27 ~~~i~~aRqiamyL~r~~t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~ 74 (94)
T 1j1v_A 27 SRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQL 74 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999 89999999888776543
No 13
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=95.46 E-value=0.024 Score=36.30 Aligned_cols=44 Identities=18% Similarity=0.250 Sum_probs=32.2
Q ss_pred CccHHHH------HHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHH
Q 036324 44 TVSIEEQ------LCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNA 88 (91)
Q Consensus 44 ~v~veE~------vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~a 88 (91)
-.+..|. ++++=.-.+...++|.|+...|.|.+||||. ...|..
T Consensus 35 lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~ 84 (101)
T 1jhg_A 35 MLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKA 84 (101)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHH
Confidence 3667777 4444333333499999999999999999999 666653
No 14
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=95.37 E-value=0.033 Score=38.19 Aligned_cols=77 Identities=9% Similarity=-0.021 Sum_probs=55.4
Q ss_pred hHHhhcCChhHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhhc--------------Ccchhhhhh
Q 036324 4 LSRSIIGSDIECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILAH--------------HVKSRTIHS 69 (91)
Q Consensus 4 l~~ll~~~~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~--------------~~~~r~i~~ 69 (91)
+.+++..+|.-....++.-..-+..+.+.+.. ...-+++++||-||..++. ..+...+++
T Consensus 112 ~~~l~~~~p~~~~~l~~~l~~~l~~~~~~~~~------~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~ 185 (250)
T 3e6c_C 112 LRTVFRTDEDMIFEIFKNYLTKVAYYARQVAE------MNTYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGE 185 (250)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHH------HTTSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH------HhcCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHH
Confidence 45566667766666655555555555554443 2346899999999987652 458889999
Q ss_pred ccccchhhHHHHHHHHH
Q 036324 70 RFLRSRETISRYFNLVL 86 (91)
Q Consensus 70 ~F~~S~eTisr~f~~Vl 86 (91)
..|.|++||||.+.+.-
T Consensus 186 ~lG~sr~tvsR~l~~L~ 202 (250)
T 3e6c_C 186 ITGVHHVTVSRVLASLK 202 (250)
T ss_dssp HHTCCHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHH
Confidence 99999999999998754
No 15
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=95.31 E-value=0.036 Score=37.10 Aligned_cols=77 Identities=13% Similarity=-0.007 Sum_probs=52.0
Q ss_pred hHHhhcCC-----hhHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhhcC-------------cchh
Q 036324 4 LSRSIIGS-----DIECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILAHH-------------VKSR 65 (91)
Q Consensus 4 l~~ll~~~-----~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~~-------------~~~r 65 (91)
+.+++..+ |.-....++.-..-...+.+.+.. ...-++++++|-||..++.. .+..
T Consensus 118 ~~~l~~~~~~~~~p~~~~~~~~~l~~~l~~~~~~~~~------l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~ 191 (230)
T 3iwz_A 118 LQQLFQTSLSPDAPRILYAIGVQLSKRLLDTTRKASR------LAFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQ 191 (230)
T ss_dssp HHHHHHTTTGGGHHHHHHHHHHHHHHHHHHHHHHHHH------HHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHH
T ss_pred HHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHH------HhcCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHH
Confidence 44556666 555555444433333333333322 23458999999999988653 4689
Q ss_pred hhhhccccchhhHHHHHHHHH
Q 036324 66 TIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 66 ~i~~~F~~S~eTisr~f~~Vl 86 (91)
++++..|.|++||||.+.+.-
T Consensus 192 ~lA~~lg~sr~tvsR~l~~L~ 212 (230)
T 3iwz_A 192 ELARLVGCSREMAGRVLKKLQ 212 (230)
T ss_dssp HHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHH
Confidence 999999999999999998754
No 16
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=95.17 E-value=0.053 Score=36.18 Aligned_cols=78 Identities=14% Similarity=0.110 Sum_probs=51.4
Q ss_pred hHHhhcCChhHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhhcC-----------cchhhhhhccc
Q 036324 4 LSRSIIGSDIECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILAHH-----------VKSRTIHSRFL 72 (91)
Q Consensus 4 l~~ll~~~~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~~-----------~~~r~i~~~F~ 72 (91)
+.+++..+|.-....++.-..-...+.+.+.. ...-++++++|-||...+.. .+...+++..|
T Consensus 116 ~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~------~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~lg 189 (227)
T 3dkw_A 116 YLRQLQDNTPLALALLAKLSTRLHQRIDEIET------LSLKNATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHLS 189 (227)
T ss_dssp HHHHHSSCTHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHTT
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH------HhcCCHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHhC
Confidence 45566666665554444333333333333222 22458899999999876643 57789999999
Q ss_pred cchhhHHHHHHHHHH
Q 036324 73 RSRETISRYFNLVLN 87 (91)
Q Consensus 73 ~S~eTisr~f~~Vl~ 87 (91)
.|++||||.+.+.-+
T Consensus 190 ~sr~tvsR~l~~l~~ 204 (227)
T 3dkw_A 190 IQPETFSRIMHRLGD 204 (227)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987543
No 17
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=95.14 E-value=0.023 Score=30.99 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 47 IEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 47 veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+..-.++.+ ...+.+++.|+..++.|..||+++++
T Consensus 18 ~~~~~~i~~l-~~~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHEL-AKMGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHH-HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHH-HHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4444445544 46889999999999999999999875
No 18
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=95.13 E-value=0.035 Score=37.29 Aligned_cols=77 Identities=18% Similarity=0.052 Sum_probs=54.8
Q ss_pred hHHhhcCChhHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhhc--------------Ccchhhhhh
Q 036324 4 LSRSIIGSDIECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILAH--------------HVKSRTIHS 69 (91)
Q Consensus 4 l~~ll~~~~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~--------------~~~~r~i~~ 69 (91)
+.+++..+|.-....++.-..-+..+.+.+.. ...-++++++|-||..++. +.+...+++
T Consensus 112 ~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~------l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~ 185 (227)
T 3d0s_A 112 LRSWIADRPEISEQLLRVLARRLRRTNNNLAD------LIFTDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQ 185 (227)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHH------HHHSCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHH
T ss_pred HHHHHHHChHHHHHHHHHHHHHHHHHHHHHHH------HhcCCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHH
Confidence 45666677776666665544444444444433 2246799999999998742 357889999
Q ss_pred ccccchhhHHHHHHHHH
Q 036324 70 RFLRSRETISRYFNLVL 86 (91)
Q Consensus 70 ~F~~S~eTisr~f~~Vl 86 (91)
..|.|++||||.+.+.-
T Consensus 186 ~lg~sr~tvsR~l~~l~ 202 (227)
T 3d0s_A 186 LVGASRETVNKALADFA 202 (227)
T ss_dssp HHTSCHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHH
Confidence 99999999999998753
No 19
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=95.08 E-value=0.025 Score=37.58 Aligned_cols=77 Identities=16% Similarity=0.062 Sum_probs=50.7
Q ss_pred hHHhhcCChhHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhhc-------Ccchhhhhhccccchh
Q 036324 4 LSRSIIGSDIECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILAH-------HVKSRTIHSRFLRSRE 76 (91)
Q Consensus 4 l~~ll~~~~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~-------~~~~r~i~~~F~~S~e 76 (91)
+.+++..+|.-.....+.-..-...+.+.+.. ...-++++++|-||..++. +.+..++++..|-|++
T Consensus 105 ~~~l~~~~p~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~lg~sr~ 178 (216)
T 4ev0_A 105 YLALIRRLPLVAHNLAALLARRLREADLELDL------LSFEEARNRVAYALLKLLRQGLGPLFQIRHHELAALAGTSRE 178 (216)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHHTSCHH
T ss_pred HHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHH------HhcCCHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHhCCCHH
Confidence 34455555555544444333333333333322 2245789999999987652 3578999999999999
Q ss_pred hHHHHHHHHH
Q 036324 77 TISRYFNLVL 86 (91)
Q Consensus 77 Tisr~f~~Vl 86 (91)
||||.+.+.-
T Consensus 179 tvsR~l~~l~ 188 (216)
T 4ev0_A 179 TVSRVLHALA 188 (216)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 20
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=95.02 E-value=0.025 Score=38.08 Aligned_cols=75 Identities=20% Similarity=0.093 Sum_probs=53.8
Q ss_pred hHHhhcCChhHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHH-HHHHHHHHHhhc-------------Ccchhhhhh
Q 036324 4 LSRSIIGSDIECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIE-EQLCMFLHILAH-------------HVKSRTIHS 69 (91)
Q Consensus 4 l~~ll~~~~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~ve-E~vamFL~i~~~-------------~~~~r~i~~ 69 (91)
+.+++..+|.-....++.-..-...+.+.+. ..-++. +++|-||...+. ..+..++++
T Consensus 112 ~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~--------~~~~~~~~Rl~~~L~~~~~~~~~~~~~~~~~~~~t~~~iA~ 183 (231)
T 3e97_A 112 FELILRRHPRVLWNLAEMLARRVTFLNDELI--------AFGQNTEAALTHVFANLYRQRLAAGVPQPEVLPLGTQDIMA 183 (231)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH--------HHHHCHHHHHHHHHHHHHHHHHHHTCSSTTEECCCHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH--------HhccChHHHHHHHHHHHHHhcCCCCCCceEecCCCHHHHHH
Confidence 4566666777666666555544555544443 123556 999999998874 457899999
Q ss_pred ccccchhhHHHHHHHHH
Q 036324 70 RFLRSRETISRYFNLVL 86 (91)
Q Consensus 70 ~F~~S~eTisr~f~~Vl 86 (91)
..|.|++||||.+++.-
T Consensus 184 ~lg~sr~tvsR~l~~L~ 200 (231)
T 3e97_A 184 RTSSSRETVSRVLKRLE 200 (231)
T ss_dssp HHTCCHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHHHHHH
Confidence 99999999999998754
No 21
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=94.93 E-value=0.061 Score=30.15 Aligned_cols=45 Identities=9% Similarity=-0.021 Sum_probs=35.6
Q ss_pred CccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 44 TVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 44 ~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
.++..++- +|......+.++..|+..++.|..||.++.+..+..+
T Consensus 15 ~L~~~~r~-il~l~~~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 15 DLTTDQRE-ALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDAL 59 (70)
T ss_dssp SSCHHHHH-HHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHH-HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 35655554 4444446789999999999999999999999887765
No 22
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=94.83 E-value=0.049 Score=37.12 Aligned_cols=77 Identities=9% Similarity=0.017 Sum_probs=52.4
Q ss_pred hHHhhcCChhHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhh--------------c-Ccchhhhh
Q 036324 4 LSRSIIGSDIECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILA--------------H-HVKSRTIH 68 (91)
Q Consensus 4 l~~ll~~~~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~--------------~-~~~~r~i~ 68 (91)
+.+++..+|.-....++.-..-+..+.+.+.. ...-+++++||-||..++ - +.+..+++
T Consensus 103 ~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~------~~~~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~~~t~~~lA 176 (238)
T 2bgc_A 103 LKELLSKNLTHFFYVFQTLQKQVSYSLAKFND------FSINGKLGSICSQLLILTYVYGKETPDGIKITLDNLTMQELG 176 (238)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH------HHTTHHHHHHHHHHHHHHHHHEEEETTEEEECCSCCCHHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH------HHccCHHHHHHHHHHHHHHHhCCCCCCceEEEeccCCHHHHH
Confidence 44556666666655555444444444444432 224578999999998754 1 56788999
Q ss_pred hccccch-hhHHHHHHHHH
Q 036324 69 SRFLRSR-ETISRYFNLVL 86 (91)
Q Consensus 69 ~~F~~S~-eTisr~f~~Vl 86 (91)
+..|.|+ +||||.+.+.-
T Consensus 177 ~~lG~sr~etvsR~l~~l~ 195 (238)
T 2bgc_A 177 YSSGIAHSSAVSRIISKLK 195 (238)
T ss_dssp HHTTCCCHHHHHHHHHHHH
T ss_pred HHhCCChHHHHHHHHHHHH
Confidence 9999999 89999998754
No 23
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=94.77 E-value=0.039 Score=38.37 Aligned_cols=77 Identities=14% Similarity=0.080 Sum_probs=51.3
Q ss_pred hHHhhcCChhHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhhcC-------------cchhhhhhc
Q 036324 4 LSRSIIGSDIECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILAHH-------------VKSRTIHSR 70 (91)
Q Consensus 4 l~~ll~~~~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~~-------------~~~r~i~~~ 70 (91)
+.+++..+|.-....++.-..-...+.+.+.. ....+++++||-||..++.. .+...|++.
T Consensus 153 ~~~l~~~~p~l~~~l~~~l~~~l~~~~~~~~~------l~~~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~ 226 (260)
T 3kcc_A 153 FRQLIQVNPDILMRLSAQMARRLQVTSEKVGN------LAFLLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQI 226 (260)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHH------HHHCCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH------HhcCCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHH
Confidence 44555566655555444333333333333322 22468999999999987653 467899999
Q ss_pred cccchhhHHHHHHHHH
Q 036324 71 FLRSRETISRYFNLVL 86 (91)
Q Consensus 71 F~~S~eTisr~f~~Vl 86 (91)
.|-|++||||.+.+.-
T Consensus 227 lG~sr~tvsR~l~~L~ 242 (260)
T 3kcc_A 227 VGCSRETVGRILKMLE 242 (260)
T ss_dssp HTCCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHH
Confidence 9999999999998754
No 24
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=94.75 E-value=0.064 Score=32.78 Aligned_cols=44 Identities=16% Similarity=0.310 Sum_probs=38.1
Q ss_pred CccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 44 TVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 44 ~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
..+-.|+-.+.|+ ..|.+++.|+...+.|..||..+.+.++..+
T Consensus 27 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4677777777775 8999999999999999999999999988765
No 25
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=94.73 E-value=0.035 Score=29.08 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=22.9
Q ss_pred hhcCcchhhhhhccccchhhHHHHHH
Q 036324 58 LAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 58 ~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
...+.+.+.|+..++.|..||+++++
T Consensus 18 ~~~g~s~~~ia~~lgvs~~Tv~r~l~ 43 (52)
T 1jko_C 18 LEKGHPRQQLAIIFGIGVSTLYRYFP 43 (52)
T ss_dssp HHTTCCHHHHHHTTSCCHHHHHHHSC
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 34668999999999999999999865
No 26
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=94.73 E-value=0.053 Score=33.23 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=35.3
Q ss_pred CCCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHH
Q 036324 42 DGTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 42 s~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
.+..+.+++..+.... ..+.+.+.|+..|+.|..||+++++.-
T Consensus 15 ~~~~s~~~r~~i~~~~-~~g~s~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 15 GRPLPNNIRLKIVEMA-ADGIRPCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp TSCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4567888887776554 578999999999999999999998764
No 27
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=94.71 E-value=0.061 Score=31.00 Aligned_cols=43 Identities=14% Similarity=0.061 Sum_probs=35.2
Q ss_pred ccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 45 VSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 45 v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
.+..|+-.+.|+ ..+.++..|+..++.|..||.++.+..+..+
T Consensus 17 L~~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl 59 (79)
T 1x3u_A 17 LSERERQVLSAV--VAGLPNKSIAYDLDISPRTVEVHRANVMAKM 59 (79)
T ss_dssp HCHHHHHHHHHH--TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 455566555554 7899999999999999999999999888764
No 28
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=94.71 E-value=0.06 Score=32.05 Aligned_cols=44 Identities=16% Similarity=0.178 Sum_probs=37.0
Q ss_pred CccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 44 TVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 44 ~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
..+-.|+-.+.|+ ..|.++..|+...+.|..||..+.+.+++.+
T Consensus 21 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 64 (82)
T 1je8_A 21 QLTPRERDILKLI--AQGLPNKMIARRLDITESTVKVHVKHMLKKM 64 (82)
T ss_dssp GSCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4666777666664 7899999999999999999999999888765
No 29
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=94.43 E-value=0.054 Score=34.36 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=41.5
Q ss_pred CCCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHH
Q 036324 42 DGTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNA 88 (91)
Q Consensus 42 s~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~a 88 (91)
++.+..--|+||+|-.--++.|...|+..|||+..||..-.+.|=+.
T Consensus 31 ~~~i~~aRqiAmYL~r~~t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~ 77 (101)
T 3pvv_A 31 TRALAQSRQIAMYLCRELTDLSLPKIGQAFGRDHTTVMYAQRKILSE 77 (101)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCCHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHhCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999998887776543
No 30
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=94.32 E-value=0.065 Score=33.68 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=32.4
Q ss_pred CCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHH
Q 036324 43 GTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 43 ~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~ 84 (91)
...+.++...|.... ..|.+.+.|+..|+.|..||+++++.
T Consensus 5 ~~~s~~~r~~i~~~~-~~G~s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMK-LLNVSLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHc
Confidence 356677776655443 67899999999999999999998864
No 31
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=94.24 E-value=0.079 Score=35.60 Aligned_cols=77 Identities=10% Similarity=0.024 Sum_probs=53.7
Q ss_pred hHHhhcCChhHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhh-------------cCcchhhhhhc
Q 036324 4 LSRSIIGSDIECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILA-------------HHVKSRTIHSR 70 (91)
Q Consensus 4 l~~ll~~~~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~-------------~~~~~r~i~~~ 70 (91)
+.+++..+|.-....++.-..-...+.+.+.. ...-++++++|-||..++ -..+..++++.
T Consensus 116 ~~~l~~~~p~~~~~~~~~l~~~l~~~~~~~~~------l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~ 189 (232)
T 2gau_A 116 IEALLKGNTSFCRYFLKALAKELGYAERRTVT------LTQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATL 189 (232)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH------HHHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH------HhcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHH
Confidence 45566667776666665555555555444443 123578999999996543 23578899999
Q ss_pred cccchhhHHHHHHHHH
Q 036324 71 FLRSRETISRYFNLVL 86 (91)
Q Consensus 71 F~~S~eTisr~f~~Vl 86 (91)
-|.|++||||.+++.-
T Consensus 190 lg~sr~tvsR~l~~l~ 205 (232)
T 2gau_A 190 SNMTVSNAIRTLSTFV 205 (232)
T ss_dssp TTSCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHH
Confidence 9999999999998753
No 32
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=94.14 E-value=0.48 Score=29.54 Aligned_cols=75 Identities=13% Similarity=0.073 Sum_probs=52.4
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHhCCCCCCC---CCccHHHHHHHHHHHhhcCcchhhhhhccc--cchhhHHHHHHH
Q 036324 10 GSDIECVNQLRMDKRTFELLCGLLRINGGLKAD---GTVSIEEQLCMFLHILAHHVKSRTIHSRFL--RSRETISRYFNL 84 (91)
Q Consensus 10 ~~~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s---~~v~veE~vamFL~i~~~~~~~r~i~~~F~--~S~eTisr~f~~ 84 (91)
.+..+.-..|++++.|..+........+....+ +.++.++.-.+.-+.-....+.+.|+..++ .|.+||+|++++
T Consensus 23 ~s~~~ia~~lgis~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s~~~i~~~lg~~~s~~tV~r~l~~ 102 (141)
T 1u78_A 23 VSLHEMSRKISRSRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKTARDIRNELQLSASKRTILNVIKR 102 (141)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCCHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCccHHHHHHHHHH
Confidence 356677788999999999888776654422211 235555554444333334489999999998 899999999875
No 33
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=94.09 E-value=0.097 Score=33.68 Aligned_cols=43 Identities=9% Similarity=0.023 Sum_probs=35.9
Q ss_pred CCCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHH
Q 036324 42 DGTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 42 s~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
.+..+.|++..|-... ..|.+.+.|+..|+.|..||+++++..
T Consensus 30 ~~~~s~e~r~~iv~~~-~~G~s~~~iA~~lgis~~TV~rw~~~~ 72 (149)
T 1k78_A 30 GRPLPDVVRQRIVELA-HQGVRPCDISRQLRVSHGCVSKILGRY 72 (149)
T ss_dssp TSCCCHHHHHHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4567888887776655 478999999999999999999998764
No 34
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=94.06 E-value=0.11 Score=29.50 Aligned_cols=45 Identities=13% Similarity=0.202 Sum_probs=36.7
Q ss_pred ccHHHHHHHHHHH-h--hcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 45 VSIEEQLCMFLHI-L--AHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 45 v~veE~vamFL~i-~--~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
.+..|+-.+.|+. + ..+.++..|+...+.|.+||.++.+..+..+
T Consensus 6 L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKL 53 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGG
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 5666676666655 2 5899999999999999999999999888765
No 35
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=94.03 E-value=0.076 Score=31.94 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=36.8
Q ss_pred CccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 44 TVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 44 ~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
..+..|+-.+.|+ ..|.++..|+..++.|..||..+.+..++.+
T Consensus 29 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL 72 (91)
T 2rnj_A 29 MLTEREMEILLLI--AKGYSNQEIASASHITIKTVKTHVSNILSKL 72 (91)
T ss_dssp GCCSHHHHHHHHH--HTTCCTTHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4666676666664 7899999999999999999999999888765
No 36
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=93.69 E-value=0.02 Score=38.52 Aligned_cols=76 Identities=18% Similarity=0.160 Sum_probs=17.3
Q ss_pred hHHhhcCChhHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhhc-------Ccchhhhhhccccchh
Q 036324 4 LSRSIIGSDIECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILAH-------HVKSRTIHSRFLRSRE 76 (91)
Q Consensus 4 l~~ll~~~~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~-------~~~~r~i~~~F~~S~e 76 (91)
+.+++..+|.-....++.-..-...+.+.+.. ...-++++++|-||...+. ..+..++++..|-|++
T Consensus 106 ~~~l~~~~p~~~~~l~~~l~~~~~~~~~~~~~------l~~~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~lg~sr~ 179 (213)
T 1o5l_A 106 FLDLLMKDRELLLFFLKDVSEHFRVVSEKLFF------LTTKTLREKLMNFLVRHMNEKRELTLPVTLEELSRLFGCARP 179 (213)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH------HHCC--------------------------------------
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH------HhhCCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHhCCCHH
Confidence 44556666666555555444444444433332 2245788999999987763 4678999999999999
Q ss_pred hHHHHHHHH
Q 036324 77 TISRYFNLV 85 (91)
Q Consensus 77 Tisr~f~~V 85 (91)
||||.+++.
T Consensus 180 tvsR~l~~L 188 (213)
T 1o5l_A 180 ALSRVFQEL 188 (213)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 999998864
No 37
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=93.41 E-value=0.12 Score=31.22 Aligned_cols=42 Identities=14% Similarity=-0.039 Sum_probs=34.5
Q ss_pred CCccHHHHHHHHHHHhhc-CcchhhhhhccccchhhHHHHHHH
Q 036324 43 GTVSIEEQLCMFLHILAH-HVKSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 43 ~~v~veE~vamFL~i~~~-~~~~r~i~~~F~~S~eTisr~f~~ 84 (91)
+..|.|.+..+--..... +.+.+.|+..||.|..||+++...
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDGASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCChHHHHHHHHCcCHHHHHHHHHH
Confidence 356778887777666655 889999999999999999999865
No 38
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=93.32 E-value=0.21 Score=29.75 Aligned_cols=46 Identities=20% Similarity=0.195 Sum_probs=37.6
Q ss_pred CccHHHHHHHHHHH-hh--cCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 44 TVSIEEQLCMFLHI-LA--HHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 44 ~v~veE~vamFL~i-~~--~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
..|..|+-.+.|+. ++ .+.++..|+...+.|.+||..+.+..+..+
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKL 66 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 35667777776655 34 889999999999999999999999887765
No 39
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=93.02 E-value=0.21 Score=29.90 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=35.1
Q ss_pred ccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 45 VSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 45 v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
.+..++-.+.| ....+.+++.|+...+.|..||.++.+..+..+
T Consensus 38 L~~~~r~vl~l-~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 38 LSAEHRAVIQR-SYYRGWSTAQIATDLGIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp SCHHHHHHHHH-HHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 55566655555 346789999999999999999999998887765
No 40
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=93.00 E-value=0.19 Score=31.96 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=34.8
Q ss_pred ccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 45 VSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 45 v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
.|..++ .+|......|.++..|+..++.|..||+++.+.....+
T Consensus 23 L~~~~r-~vl~l~y~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kL 66 (113)
T 1s7o_A 23 LTDKQM-NYIELYYADDYSLAEIADEFGVSRQAVYDNIKRTEKIL 66 (113)
T ss_dssp SCHHHH-HHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 455555 45555556789999999999999999999999887654
No 41
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=92.79 E-value=0.26 Score=30.65 Aligned_cols=46 Identities=24% Similarity=0.195 Sum_probs=38.0
Q ss_pred CCCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 42 DGTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 42 s~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
....|..|+-.+.| +..|.++..|+...+.|..||..+...+++.+
T Consensus 32 ~~~Lt~re~~Vl~l--~~~G~s~~EIA~~L~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRL--FAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHH--HHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 45677777765555 35899999999999999999999999988765
No 42
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=92.68 E-value=0.24 Score=30.10 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=35.6
Q ss_pred CccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 44 TVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 44 ~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
..|-.|+-.+.|+ . .|.++..|+...+.|..||..+...+++.+
T Consensus 29 ~Lt~rE~~Vl~l~-~-~G~s~~eIA~~L~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 29 VLTPRECLILQEV-E-KGFTNQEIADALHLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp CCCHHHHHHHHHH-H-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHH-H-cCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 5666666554443 3 899999999999999999999999988765
No 43
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=92.66 E-value=0.28 Score=28.10 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=36.9
Q ss_pred CccHHHHHHHHHHHh-h--cCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 44 TVSIEEQLCMFLHIL-A--HHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 44 ~v~veE~vamFL~i~-~--~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
..+..|+-.+.|+.. + .+.++..|+...+.|.+||.++.+..+..+
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKL 58 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 456667766666552 2 789999999999999999999999887765
No 44
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=92.54 E-value=0.54 Score=30.75 Aligned_cols=44 Identities=20% Similarity=0.264 Sum_probs=37.0
Q ss_pred CCccHHHHHHHHHHHhhc-------------CcchhhhhhccccchhhHHHHHHHHH
Q 036324 43 GTVSIEEQLCMFLHILAH-------------HVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 43 ~~v~veE~vamFL~i~~~-------------~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
..-+++++||-||..++. ..+..++++..|.|++||||.+++.-
T Consensus 108 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~ 164 (195)
T 3b02_A 108 QTGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSKVLADLR 164 (195)
T ss_dssp TSSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 356889999999998763 24678999999999999999998754
No 45
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=92.38 E-value=0.18 Score=33.24 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=36.6
Q ss_pred CccHHHHHHHHHHHhhc-------------CcchhhhhhccccchhhHHHHHHHHH
Q 036324 44 TVSIEEQLCMFLHILAH-------------HVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 44 ~v~veE~vamFL~i~~~-------------~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
.-+++++||-||..++. ..+...+++..|.|++||||.+++.-
T Consensus 116 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~~L~ 171 (202)
T 2zcw_A 116 TQRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIGELA 171 (202)
T ss_dssp HCCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 46789999999998754 25778999999999999999998754
No 46
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=92.34 E-value=0.15 Score=33.22 Aligned_cols=41 Identities=10% Similarity=0.050 Sum_probs=33.6
Q ss_pred CCCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 42 DGTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 42 s~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+..+.+++..|.... ..+.+.+.|+..|+.|..||+++++
T Consensus 23 ~~~~s~e~r~~ii~l~-~~G~s~~~IA~~lgis~~TV~rwl~ 63 (159)
T 2k27_A 23 GRPLPEVVRQRIVDLA-HQGVRPCDISRQLRVSHGCVSKILG 63 (159)
T ss_dssp SCSSCHHHHHHHHHHH-HHTCCHHHHHHHHTCCSHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHH-HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3467888887775554 5789999999999999999999875
No 47
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=92.33 E-value=0.15 Score=28.44 Aligned_cols=40 Identities=13% Similarity=0.209 Sum_probs=32.8
Q ss_pred CccHHHHHHHHHHHhhcCcc----hhhhhhccccchhhHHHHHHH
Q 036324 44 TVSIEEQLCMFLHILAHHVK----SRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 44 ~v~veE~vamFL~i~~~~~~----~r~i~~~F~~S~eTisr~f~~ 84 (91)
.-|.|.++.+ +-.+..+.+ .+.++..|+.|.+||++...+
T Consensus 5 ~ys~efK~~~-~~~~~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 5 IFTPHFKLQV-LESYRNDNDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCHHHHHHH-HHHHHHCTTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCHHHHHHH-HHHHHcCCCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 5677888887 666667778 999999999999999988653
No 48
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=92.19 E-value=0.34 Score=30.28 Aligned_cols=45 Identities=11% Similarity=0.124 Sum_probs=40.9
Q ss_pred CCCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHH
Q 036324 42 DGTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 42 s~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
.+.=+.++++++-+..+..+.+...+..+|+.|.++|.+..+...
T Consensus 30 ~rrWs~~~Kl~VV~~~~~g~~s~~e~arry~Is~s~i~~W~r~~~ 74 (95)
T 2jrt_A 30 TRRWVASRKAAVVKAVIHGLITEREALDRYSLSEEEFALWRSAVA 74 (95)
T ss_dssp CCCCCHHHHHHHHHHHHTTSSCHHHHHHHTTCCHHHHHHHHHHTT
T ss_pred hhccCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 357889999999999999999999999999999999999887653
No 49
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=92.03 E-value=0.34 Score=30.59 Aligned_cols=44 Identities=9% Similarity=0.081 Sum_probs=34.8
Q ss_pred ccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 45 VSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 45 v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
.|..++ .+|......+.++..|+..++.|..||.++.+.....+
T Consensus 26 L~~~~r-~vl~l~~~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kL 69 (113)
T 1xsv_A 26 LTNKQR-NYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLV 69 (113)
T ss_dssp SCHHHH-HHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 444444 45555557889999999999999999999998877654
No 50
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=91.97 E-value=0.7 Score=28.43 Aligned_cols=59 Identities=8% Similarity=0.151 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 20 RMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 20 RM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
.|+...+..+.+.++.-. + ..++.++.+......+...++..++.|.+|||+++...-+
T Consensus 13 ~~~~~~~~~~~~~~~~l~---~------~~~~~il~~L~~~~~s~~ela~~l~is~stvsr~l~~Le~ 71 (119)
T 2lkp_A 13 PLDSQAAAQVASTLQALA---T------PSRLMILTQLRNGPLPVTDLAEAIGMEQSAVSHQLRVLRN 71 (119)
T ss_dssp CCHHHHHHHHHHHHHHHC---C------HHHHHHHHHHHHCCCCHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC---C------HHHHHHHHHHHHCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 455567777777776522 1 4567777666555799999999999999999999987543
No 51
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=91.84 E-value=0.036 Score=36.30 Aligned_cols=76 Identities=13% Similarity=-0.063 Sum_probs=17.5
Q ss_pred hHHhhcCChhHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhh---cCcchhhhhhccccchhhHHH
Q 036324 4 LSRSIIGSDIECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILA---HHVKSRTIHSRFLRSRETISR 80 (91)
Q Consensus 4 l~~ll~~~~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~---~~~~~r~i~~~F~~S~eTisr 80 (91)
+.+++..+|.-.....++-...+..+.+.+.. ...-++++++|-||...+ ...+..++++.-|.|++||||
T Consensus 114 ~~~l~~~~p~~~~~~~~~~~~~l~~~~~~~~~------l~~~~~~~Rl~~~L~~~~~~~~~~t~~~iA~~lG~sretlsR 187 (194)
T 3dn7_A 114 QENLFERIPALERYFRLVYQKSFAAAQLRSKF------QHMYSKEEQYHNFSSRFPEFIQRVPQYLLASYLGFTPEYLSE 187 (194)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHH------HHHC--------------------------------------
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH------HhcCCHHHHHHHHHHHChHHHHHCCHHHHHHHhCCCHHHHHH
Confidence 44556666665555554444444444444433 224577888998887643 357889999999999999999
Q ss_pred HHHHH
Q 036324 81 YFNLV 85 (91)
Q Consensus 81 ~f~~V 85 (91)
..++.
T Consensus 188 ~l~~l 192 (194)
T 3dn7_A 188 IRKKY 192 (194)
T ss_dssp -----
T ss_pred HHHhh
Confidence 98764
No 52
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=91.15 E-value=0.15 Score=33.43 Aligned_cols=42 Identities=10% Similarity=0.130 Sum_probs=35.6
Q ss_pred CCccHHHHHHHHHHH-hh-cCcchhhhhh----cc--ccchhhHHHHHHH
Q 036324 43 GTVSIEEQLCMFLHI-LA-HHVKSRTIHS----RF--LRSRETISRYFNL 84 (91)
Q Consensus 43 ~~v~veE~vamFL~i-~~-~~~~~r~i~~----~F--~~S~eTisr~f~~ 84 (91)
..+|++++++|-.|. -. .+.+..+++. .| +.|.+|||++.+.
T Consensus 10 ~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 10 RAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp SCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 479999999999999 33 4468888999 99 8999999998764
No 53
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=90.97 E-value=0.43 Score=28.48 Aligned_cols=41 Identities=5% Similarity=0.081 Sum_probs=31.0
Q ss_pred CccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHH
Q 036324 44 TVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 44 ~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
..+.|.+..+--.. ..+.+.+.|+..|+.|..||+++..+-
T Consensus 22 ~ys~e~k~~~v~~~-~~g~s~~~iA~~~gIs~sTl~rW~k~~ 62 (87)
T 2elh_A 22 SLTPRDKIHAIQRI-HDGESKASVARDIGVPESTLRGWCKNE 62 (87)
T ss_dssp SCCHHHHHHHHHHH-HHTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45666655444333 467899999999999999999998654
No 54
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=90.95 E-value=0.41 Score=29.95 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=33.8
Q ss_pred CCccHHHHHHHHHHHhhcCcch-hhhhhccccchhhHHHHHHH
Q 036324 43 GTVSIEEQLCMFLHILAHHVKS-RTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 43 ~~v~veE~vamFL~i~~~~~~~-r~i~~~F~~S~eTisr~f~~ 84 (91)
+..|.|++..+--+...++.+. ++++..|+.|.+||++..+.
T Consensus 6 ~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs~stl~~~~~~ 48 (131)
T 1hlv_A 6 RQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKN 48 (131)
T ss_dssp CCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHT
T ss_pred eeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCCHHHHHHHHhc
Confidence 4688999888876664556555 49999999999999998875
No 55
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=90.82 E-value=0.55 Score=29.76 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHH
Q 036324 20 RMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNA 88 (91)
Q Consensus 20 RM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~a 88 (91)
||+.+.|..+...| .++ +..+-+.=...-.|.++..|+..+|.|+.||||.....-+.
T Consensus 4 rmT~~eFe~~~~~l----------~~~-~~~~~~A~lyYv~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~ 61 (101)
T 2w7n_A 4 RLTESQFQEAIQGL----------EVG-QQTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAA 61 (101)
T ss_dssp CCCHHHHHHHHTTC----------CCC-HHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHccC----------ChH-HHHHHHHHHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 78999998776443 121 11222222334568899999999999999999999887654
No 56
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=90.36 E-value=0.96 Score=28.75 Aligned_cols=51 Identities=6% Similarity=0.087 Sum_probs=41.7
Q ss_pred CCCCCCC--CCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHH
Q 036324 36 NGGLKAD--GTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 36 ~~~l~~s--~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
+++++++ +.=....++++-.++...+.|.+.+..+|+.|.+||.+....+-
T Consensus 23 ~~dlp~~~~rRWva~rK~~VV~~v~~g~lS~~EAa~ry~Is~~ei~~W~r~y~ 75 (101)
T 2oa4_A 23 RADLPPANTRRWVASRKIAVVRGVIYGLITLAEAKQTYGLSDEEFNSWVSALA 75 (101)
T ss_dssp TTSSCCSCCSCCCHHHHHHHHHHHHHTTCCHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred hcCCChHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4555554 34445579999999999999999999999999999999887653
No 57
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=90.04 E-value=0.38 Score=28.33 Aligned_cols=39 Identities=8% Similarity=0.020 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhc-CcchhhhhhccccchhhHHHHHHHHHH
Q 036324 49 EQLCMFLHILAH-HVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 49 E~vamFL~i~~~-~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
-++.|..++..+ +.+..+++..++.|.+||++++...-+
T Consensus 25 ~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~ 64 (99)
T 3cuo_A 25 KRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRD 64 (99)
T ss_dssp HHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345555444444 589999999999999999999987543
No 58
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=89.61 E-value=0.74 Score=28.66 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=37.6
Q ss_pred CccHHHHHHHHHHHh---hcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 44 TVSIEEQLCMFLHIL---AHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 44 ~v~veE~vamFL~i~---~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
..|..|+-.+-|+.. +.+.++..|+..++.|.+||....+..+..+
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkL 67 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKL 67 (99)
T ss_pred cCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 466777877777664 3789999999999999999999988777654
No 59
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=89.55 E-value=1.3 Score=26.64 Aligned_cols=73 Identities=15% Similarity=0.075 Sum_probs=47.6
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHHHhCCCCCC-------CCCccHHHHHHHHHHHhh--cCcchhhhhhcc---c------
Q 036324 11 SDIECVNQLRMDKRTFELLCGLLRINGGLKA-------DGTVSIEEQLCMFLHILA--HHVKSRTIHSRF---L------ 72 (91)
Q Consensus 11 ~~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~-------s~~v~veE~vamFL~i~~--~~~~~r~i~~~F---~------ 72 (91)
+..+.-..|.+++.|+.+.....+..+.+.+ ...++.++.-.+ +-.+. ...+.+.|...+ +
T Consensus 35 s~~~ia~~lgis~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i-~~~~~~~~~~s~~~i~~~l~~~g~~~~~~ 113 (128)
T 1pdn_C 35 RPCVISRQLRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRI-EEYKRSSPGMFSWEIREKLIREGVCDRST 113 (128)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHH-HHTTTTCTTCCHHHHHHHHHHTSSSCSTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHHHHHHH-HHHHHhCcchHHHHHHHHHHHcCCccccC
Confidence 4566778899999999999888876554432 123443333222 32332 237888888888 5
Q ss_pred -cchhhHHHHHHH
Q 036324 73 -RSRETISRYFNL 84 (91)
Q Consensus 73 -~S~eTisr~f~~ 84 (91)
.|.+||+|+++.
T Consensus 114 ~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 114 APSVSAISRLVRG 126 (128)
T ss_dssp CCCHHHHHHHC--
T ss_pred CcCHHHHHHHHHh
Confidence 599999998764
No 60
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=89.53 E-value=1.7 Score=26.32 Aligned_cols=58 Identities=12% Similarity=0.213 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 21 MDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 21 M~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
++.+.+..+.+.++. +.+ .-++.|+.+....+.+...++..++.|.+|||+++...-+
T Consensus 8 ~~~~~~~~~~~~~~~---l~~------~~r~~IL~~L~~~~~~~~ela~~l~is~stvs~~L~~L~~ 65 (106)
T 1r1u_A 8 INTDTLERVTEIFKA---LGD------YNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKS 65 (106)
T ss_dssp -CHHHHHHHHHHHHH---TCS------HHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH---hCC------HHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345566677777765 222 2344555544455679999999999999999999987543
No 61
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=89.47 E-value=2.8 Score=26.59 Aligned_cols=77 Identities=14% Similarity=0.070 Sum_probs=50.9
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHhCCCCCC-------CCCccHHHHHHHHHHHhh-cCcchhhhhhcc--------c-
Q 036324 10 GSDIECVNQLRMDKRTFELLCGLLRINGGLKA-------DGTVSIEEQLCMFLHILA-HHVKSRTIHSRF--------L- 72 (91)
Q Consensus 10 ~~~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~-------s~~v~veE~vamFL~i~~-~~~~~r~i~~~F--------~- 72 (91)
.+....-..|++++.|..+.....+..+.+.+ ...++.++.-.+--++.. ...+.+.|...+ +
T Consensus 49 ~s~~~iA~~lgis~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~ 128 (149)
T 1k78_A 49 VRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDT 128 (149)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCcchhHHHHHHHHHHhcccccCC
Confidence 35567788899999999999988877654433 123454433333333322 246778888776 5
Q ss_pred -cchhhHHHHHHHHH
Q 036324 73 -RSRETISRYFNLVL 86 (91)
Q Consensus 73 -~S~eTisr~f~~Vl 86 (91)
.|.+||+|+++.-+
T Consensus 129 ~~S~sTV~r~L~~~~ 143 (149)
T 1k78_A 129 VPSVSSINRIIRTKV 143 (149)
T ss_dssp SCCHHHHHHHHHCC-
T ss_pred CcCHHHHHHHHHHHh
Confidence 79999999987644
No 62
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=89.41 E-value=0.65 Score=25.48 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=25.5
Q ss_pred HHHHHHHHHhh--cCcchhhhhhcc-----ccchhhHHHHHHH
Q 036324 49 EQLCMFLHILA--HHVKSRTIHSRF-----LRSRETISRYFNL 84 (91)
Q Consensus 49 E~vamFL~i~~--~~~~~r~i~~~F-----~~S~eTisr~f~~ 84 (91)
++.++.+..+. ...+..++...| +.|..||+|.+++
T Consensus 5 ~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~ 47 (64)
T 2p5k_A 5 QRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKE 47 (64)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHH
Confidence 44444443333 346778888888 9999999999873
No 63
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=89.33 E-value=0.53 Score=28.17 Aligned_cols=36 Identities=6% Similarity=0.052 Sum_probs=28.6
Q ss_pred HHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 51 LCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 51 vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
..|.-++ ..+.+..+++..++.|..||++++...-+
T Consensus 34 ~~Il~~L-~~~~~~~eLa~~l~is~~tv~~~L~~L~~ 69 (96)
T 1y0u_A 34 RKILRML-DKGRSEEEIMQTLSLSKKQLDYHLKVLEA 69 (96)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3444444 66789999999999999999999987654
No 64
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=89.03 E-value=0.39 Score=31.00 Aligned_cols=26 Identities=27% Similarity=0.138 Sum_probs=23.3
Q ss_pred hhcCcchhhhhhccccchhhHHHHHH
Q 036324 58 LAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 58 ~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+..|.+||+|+..-|.|..||+|.=+
T Consensus 55 L~~G~SyreIa~~tG~StaTIsRv~r 80 (107)
T 3frw_A 55 LTDKRTYLDISEKTGASTATISRVNR 80 (107)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCccHHHHHHHHH
Confidence 77889999999999999999999543
No 65
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=88.83 E-value=0.42 Score=29.75 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=25.4
Q ss_pred HHHHHhhcCcchhhhhhccccchhhHHHHHHH
Q 036324 53 MFLHILAHHVKSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 53 mFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~ 84 (91)
|-=++..++.+..+++..+|.|..||||.++.
T Consensus 12 I~~~l~~~~~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 12 IGKYIVETKKTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHHHHHHHCCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 33344455588999999999999999999864
No 66
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=88.66 E-value=2 Score=30.46 Aligned_cols=45 Identities=13% Similarity=0.011 Sum_probs=36.8
Q ss_pred CCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 43 GTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 43 ~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
...|..|+-.+.|. +.|.++..|+...+.|..||..|...+.+.+
T Consensus 196 ~~Lt~re~~vl~~~--~~G~s~~eIA~~l~is~~TV~~~~~~~~~kl 240 (265)
T 3qp6_A 196 MPLSQREYDIFHWM--SRGKTNWEIATILNISERTVKFHVANVIRKL 240 (265)
T ss_dssp CCCCHHHHHHHHHH--HTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 35676666555544 6999999999999999999999999988764
No 67
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=88.57 E-value=0.8 Score=26.96 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=25.1
Q ss_pred hcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 59 AHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 59 ~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
..+.+..+++..++.|..||+|++....+
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~ 62 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIE 62 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45689999999999999999999887643
No 68
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=88.41 E-value=0.75 Score=32.77 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=39.9
Q ss_pred CCCCCccHHHHHHHHHHHhhcCcchhhhhhcc-ccchhhHHHHHHHHHH
Q 036324 40 KADGTVSIEEQLCMFLHILAHHVKSRTIHSRF-LRSRETISRYFNLVLN 87 (91)
Q Consensus 40 ~~s~~v~veE~vamFL~i~~~~~~~r~i~~~F-~~S~eTisr~f~~Vl~ 87 (91)
+.++.+....++||||-.=-.+.++.+|+..| +++..||...++.+=+
T Consensus 252 ~~~~~~~~~r~i~~~l~r~~~~~s~~~ig~~~g~~~~~tv~~~~~~~~~ 300 (324)
T 1l8q_A 252 KRNKRTSEARKIAMYLCRKVCSASLIEIARAFKRKDHTTVIHAIRSVEE 300 (324)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHCCCHHHHHHHSSCCCSTHHHHHHHHHHH
T ss_pred CCCCccchHHHHHHHHHHHHhCCCHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 34567889999999986644568999999999 8999999999887744
No 69
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=87.65 E-value=1.3 Score=29.49 Aligned_cols=45 Identities=13% Similarity=0.171 Sum_probs=35.8
Q ss_pred CccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 44 TVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 44 ~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
..+..++-.+-|+. ..+.++..|+..+|.|.+||++..+..+..+
T Consensus 187 ~L~~~~r~vl~l~~-~~g~s~~EIA~~lgis~~~V~~~~~ra~~~L 231 (239)
T 1rp3_A 187 KLPEREKLVIQLIF-YEELPAKEVAKILETSVSRVSQLKAKALERL 231 (239)
T ss_dssp TSCHHHHHHHHHHH-TSCCCHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-hcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 35566666655544 5799999999999999999999998877654
No 70
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=87.32 E-value=3.3 Score=28.38 Aligned_cols=46 Identities=13% Similarity=0.181 Sum_probs=38.2
Q ss_pred CCCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 42 DGTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 42 s~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
....|..|+-.+.| ++.|.++..|+...+.|..||..+.+.+.+.+
T Consensus 173 ~~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (236)
T 2q0o_A 173 KQMLSPREMLCLVW--ASKGKTASVTANLTGINARTVQHYLDKARAKL 218 (236)
T ss_dssp GGSCCHHHHHHHHH--HHTTCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 34577777766555 47999999999999999999999999887754
No 71
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=87.28 E-value=0.62 Score=27.76 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=29.4
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
++.|.-+....+.+...++..++.|.+|||+++...-+
T Consensus 25 r~~Il~~L~~~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (98)
T 3jth_A 25 RLQILCMLHNQELSVGELCAKLQLSQSALSQHLAWLRR 62 (98)
T ss_dssp HHHHHHHTTTSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44554444445679999999999999999999987644
No 72
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=87.14 E-value=0.89 Score=28.27 Aligned_cols=39 Identities=3% Similarity=0.036 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
-++.|.-+....+.+...++..++.|.+|||+++...-+
T Consensus 19 ~R~~Il~~L~~~~~~~~eLa~~l~is~~tvs~hL~~L~~ 57 (118)
T 3f6o_A 19 TRRAVLGRLSRGPATVSELAKPFDMALPSFMKHIHFLED 57 (118)
T ss_dssp HHHHHHHHHHTCCEEHHHHHTTCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 345555555566789999999999999999999987644
No 73
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=86.88 E-value=1.7 Score=30.12 Aligned_cols=47 Identities=9% Similarity=-0.039 Sum_probs=37.8
Q ss_pred CCCCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 41 ADGTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 41 ~s~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
+....|..|+-.+.| ++.|.++..|+...+.|..||..+...+.+.+
T Consensus 172 ~~~~Lt~re~~vl~~--~~~G~s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (237)
T 3szt_A 172 SNVRLTARETEMLKW--TAVGKTYGEIGLILSIDQRTVKFHIVNAMRKL 218 (237)
T ss_dssp GGCCCCHHHHHHHHH--HHTTCCHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHH--HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 344677776655544 47999999999999999999999999988754
No 74
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=86.66 E-value=2.3 Score=26.08 Aligned_cols=40 Identities=10% Similarity=0.046 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHH
Q 036324 47 IEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 47 veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
.+.++-..|+.-..+.+..+++..++.|++||++.....-
T Consensus 27 ~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~ 66 (152)
T 1ku9_A 27 SVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLE 66 (152)
T ss_dssp HHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4455555665444678999999999999999999987654
No 75
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=86.64 E-value=0.99 Score=27.09 Aligned_cols=38 Identities=8% Similarity=0.176 Sum_probs=29.1
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
++.|..+....+.+...++...+.|.+|||++....-+
T Consensus 25 r~~Il~~L~~~~~~~~ela~~l~is~~tvs~~L~~L~~ 62 (102)
T 3pqk_A 25 RLMLVCTLVEGEFSVGELEQQIGIGQPTLSQQLGVLRE 62 (102)
T ss_dssp HHHHHHHHHTCCBCHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34444444445689999999999999999999987654
No 76
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=86.55 E-value=1.2 Score=26.93 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=27.9
Q ss_pred HHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 52 CMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 52 amFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
.|.-+....+.+...++..++.|.+||++++...-+
T Consensus 25 ~IL~~L~~~~~~~~ela~~l~is~~tv~~~l~~L~~ 60 (114)
T 2oqg_A 25 EILTELGRADQSASSLATRLPVSRQAIAKHLNALQA 60 (114)
T ss_dssp HHHHHHHHSCBCHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 333333455689999999999999999999987543
No 77
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=86.46 E-value=0.41 Score=31.46 Aligned_cols=28 Identities=25% Similarity=0.154 Sum_probs=24.3
Q ss_pred HHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 56 HILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 56 ~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-.+..+.+|++|+...+.|..||+|+=+
T Consensus 70 klL~~G~syreIA~~~g~S~aTIsRv~r 97 (119)
T 3kor_A 70 KMIKQGYTYATIEQESGASTATISRVKR 97 (119)
T ss_dssp HHHHHTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCCCHHHHHHHHH
Confidence 3477889999999999999999999643
No 78
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=86.31 E-value=1.3 Score=27.59 Aligned_cols=36 Identities=11% Similarity=0.131 Sum_probs=30.1
Q ss_pred HHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 53 MFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 53 mFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
+|. ..-.|.++..|+..++.|..||.+..+..+..+
T Consensus 117 v~~-~~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 152 (164)
T 3mzy_A 117 VLT-YLIRGYSYREIATILSKNLKSIDNTIQRIRKKS 152 (164)
T ss_dssp HHH-HHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHH-HHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 444 356889999999999999999999998887654
No 79
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=86.29 E-value=0.85 Score=28.04 Aligned_cols=29 Identities=10% Similarity=-0.057 Sum_probs=25.1
Q ss_pred hcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 59 AHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 59 ~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
..+.+..+++..++.|.+|||+++...-+
T Consensus 36 ~~~~s~~eLa~~lgis~stvs~~L~~L~~ 64 (108)
T 2kko_A 36 QGERAVEAIATATGMNLTTASANLQALKS 64 (108)
T ss_dssp TCCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45689999999999999999999987654
No 80
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=86.07 E-value=0.73 Score=25.42 Aligned_cols=30 Identities=10% Similarity=0.115 Sum_probs=25.0
Q ss_pred HHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 53 MFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 53 mFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++.++..++ +...++...+.|.+|||++.+
T Consensus 6 l~~~~~~~g-s~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 6 LSKYLEEHG-TQSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp HHHHHHHTC-CHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHcC-CHHHHHHHHCcCHHHHHHHHc
Confidence 344566677 999999999999999999874
No 81
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=86.05 E-value=0.44 Score=28.92 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhc-CcchhhhhhccccchhhHHHHHHHHHHH
Q 036324 48 EEQLCMFLHILAH-HVKSRTIHSRFLRSRETISRYFNLVLNA 88 (91)
Q Consensus 48 eE~vamFL~i~~~-~~~~r~i~~~F~~S~eTisr~f~~Vl~a 88 (91)
.-++.|+.+.+.+ +.+...++..++.|.+|||+++...-++
T Consensus 27 ~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 27 PMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGK 68 (99)
T ss_dssp HHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3456676455443 5889999999999999999999875443
No 82
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=85.72 E-value=0.52 Score=24.62 Aligned_cols=24 Identities=25% Similarity=0.228 Sum_probs=20.2
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHHH
Q 036324 11 SDIECVNQLRMDKRTFELLCGLLR 34 (91)
Q Consensus 11 ~~~~c~~~fRM~~~~F~~L~~~L~ 34 (91)
+|.+....|+|+++.|.+|=.+=+
T Consensus 2 sd~dF~~vFgmsr~eF~~LP~WKq 25 (35)
T 1wy3_A 2 SDEDFKAVFGMTRSAFANLPLWLQ 25 (35)
T ss_dssp CHHHHHHHHSSCHHHHHHSCHHHH
T ss_pred CHHHHHHHHCCCHHHHHHCcHHHH
Confidence 578899999999999999866543
No 83
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=85.60 E-value=1.3 Score=30.96 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=29.6
Q ss_pred CCCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHH
Q 036324 42 DGTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 42 s~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~ 84 (91)
.+.-|.-|.-.-..|....|.++..|+..+|.|+.||||.+..
T Consensus 5 ake~sl~eiG~ria~~y~~g~tQ~eIA~~lGiSr~~VSR~L~~ 47 (192)
T 1zx4_A 5 ALQHSIREIGLRLMRMKNDGMSQKDIAAKEGLSQAKVTRALQA 47 (192)
T ss_dssp CCSSCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 3333443333333333467799999999999999999997654
No 84
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=85.49 E-value=0.74 Score=28.03 Aligned_cols=42 Identities=14% Similarity=0.078 Sum_probs=33.2
Q ss_pred CccHHHHHHHHHHHhhcC-------cchhhhhhccccchhhHHHHHHHH
Q 036324 44 TVSIEEQLCMFLHILAHH-------VKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 44 ~v~veE~vamFL~i~~~~-------~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
.-|.|.+..+--.+...+ .+...|+..||.|.+||+++.++.
T Consensus 6 ~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~ 54 (108)
T 2rn7_A 6 RFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHH
Confidence 467777776665555444 799999999999999999998764
No 85
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=85.47 E-value=1.5 Score=26.23 Aligned_cols=28 Identities=21% Similarity=0.150 Sum_probs=23.8
Q ss_pred hcCcchhhhhhccccchhhHHHHHHHHH
Q 036324 59 AHHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 59 ~~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
|...+.+.|++.|+.|..||.+++...-
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le 49 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLH 49 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5567889999999999999999987653
No 86
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=85.11 E-value=1.1 Score=28.18 Aligned_cols=38 Identities=5% Similarity=-0.042 Sum_probs=29.2
Q ss_pred HHHHHHHHh-hcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 50 QLCMFLHIL-AHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 50 ~vamFL~i~-~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
++.|+.+.. ..+.+...++..++.|.+|||+++...-+
T Consensus 44 rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~ 82 (122)
T 1u2w_A 44 RAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYK 82 (122)
T ss_dssp HHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345555444 35689999999999999999999987543
No 87
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=84.72 E-value=1.9 Score=26.16 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=26.8
Q ss_pred HHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 55 LHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 55 L~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
|+.-|...+.+.++..++.|+.||++++...-+
T Consensus 27 l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~ 59 (110)
T 1q1h_A 27 LLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEE 59 (110)
T ss_dssp HHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344565689999999999999999999886543
No 88
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=84.69 E-value=0.62 Score=24.61 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=19.9
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHH
Q 036324 11 SDIECVNQLRMDKRTFELLCGLL 33 (91)
Q Consensus 11 ~~~~c~~~fRM~~~~F~~L~~~L 33 (91)
+|.+....|+|+++.|.+|=.+=
T Consensus 4 sd~dF~~vFgmsr~eF~~LP~WK 26 (37)
T 1und_A 4 SEQDFVSVFGITRGQFAALPGWK 26 (37)
T ss_dssp CHHHHHHHHSSCHHHHHHSCHHH
T ss_pred CHHHHHHHHCcCHHHHHHChHHH
Confidence 68899999999999999986553
No 89
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=84.65 E-value=1.3 Score=28.04 Aligned_cols=59 Identities=8% Similarity=0.094 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 20 RMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 20 RM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
.++...+..+.+.++.-+ + .-++.|+.+....+.+...++..++.|.+|||+++...-+
T Consensus 27 ~~~~~~~~~~~~~~kaL~---~------~~rl~IL~~L~~~~~s~~ela~~lgis~stvs~~L~~Le~ 85 (122)
T 1r1t_A 27 AIAPEVAQSLAEFFAVLA---D------PNRLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLRN 85 (122)
T ss_dssp CCCHHHHHHHHHHHHHHC---C------HHHHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHHHHhC---C------HHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456667777777776522 1 2345555554444689999999999999999999987544
No 90
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=84.61 E-value=1.5 Score=25.47 Aligned_cols=28 Identities=14% Similarity=0.102 Sum_probs=24.2
Q ss_pred cCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
...+..++++.++.|..||++++...-+
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~ 40 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEK 40 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3578999999999999999999887654
No 91
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=84.49 E-value=1.1 Score=29.48 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=31.0
Q ss_pred HHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 55 LHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 55 L~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
|..++.|.++.+|+...+.|..||..|...+.+.+
T Consensus 163 l~~l~~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl 197 (215)
T 1a04_A 163 LKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKM 197 (215)
T ss_dssp HHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHc
Confidence 55567889999999999999999999999988765
No 92
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=84.40 E-value=1.3 Score=25.92 Aligned_cols=39 Identities=8% Similarity=0.130 Sum_probs=29.9
Q ss_pred HHHHHHHHHh-hcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 49 EQLCMFLHIL-AHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 49 E~vamFL~i~-~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
-++.|+.+.. ..+.+...++..++.|.+|||++++..-+
T Consensus 17 ~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~ 56 (100)
T 1ub9_A 17 VRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLER 56 (100)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3555555444 34689999999999999999999987543
No 93
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=84.40 E-value=1.2 Score=28.07 Aligned_cols=40 Identities=5% Similarity=0.049 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhcC-cchhhhhhccccchhhHHHHHHHHHH
Q 036324 48 EEQLCMFLHILAHH-VKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 48 eE~vamFL~i~~~~-~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
+.++...|+.-+.+ .+...|+...+.|.+||+|.+....+
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~ 68 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHE 68 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44555555554444 79999999999999999999887543
No 94
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=83.55 E-value=1.9 Score=30.10 Aligned_cols=45 Identities=18% Similarity=0.169 Sum_probs=38.8
Q ss_pred CCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 43 GTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 43 ~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
...|..|+-++-|+ ..|.++..|+...+.|..||..+.+..++.+
T Consensus 196 ~~L~~~erevl~L~--~~G~s~~EIA~~L~iS~~TVk~~l~ra~~kL 240 (258)
T 3clo_A 196 NILSEREKEILRCI--RKGLSSKEIAATLYISVNTVNRHRQNILEKL 240 (258)
T ss_dssp TSSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 35777888777775 5999999999999999999999999988765
No 95
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=83.51 E-value=2.4 Score=29.06 Aligned_cols=45 Identities=7% Similarity=-0.056 Sum_probs=37.8
Q ss_pred CCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 43 GTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 43 ~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
...|..|+-.+.| ++.|.++..|+...+.|..||..+.+.+.+.+
T Consensus 172 ~~Lt~~e~~vl~~--~~~g~s~~eIa~~l~is~~tV~~~~~~~~~kl 216 (234)
T 1l3l_A 172 AWLDPKEATYLRW--IAVGKTMEEIADVEGVKYNSVRVKLREAMKRF 216 (234)
T ss_dssp CCCCHHHHHHHHH--HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH--HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 4577777766555 47999999999999999999999999887765
No 96
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=83.06 E-value=1.3 Score=27.56 Aligned_cols=35 Identities=9% Similarity=0.143 Sum_probs=26.7
Q ss_pred HHHHHHHhhcCcchhhhhhccccchhhHHHHHHHH
Q 036324 51 LCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 51 vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
+.|..+....+.+...++..++.|.+|||++++..
T Consensus 24 ~~IL~~L~~~~~~~~eLa~~lgis~stvs~~L~~L 58 (118)
T 2jsc_A 24 CRILVALLDGVCYPGQLAAHLGLTRSNVSNHLSCL 58 (118)
T ss_dssp HHHHHHHHTTCCSTTTHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34433333456788999999999999999999864
No 97
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=82.95 E-value=2 Score=26.74 Aligned_cols=40 Identities=8% Similarity=-0.021 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHh---hcCcchhhhhhccccchhhHHHHHHHHH
Q 036324 47 IEEQLCMFLHIL---AHHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 47 veE~vamFL~i~---~~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
.++++-..||.+ +.+.+.+.++..++.|.+||++.++..-
T Consensus 14 ~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le 56 (139)
T 2x4h_A 14 REFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLE 56 (139)
T ss_dssp HHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHH
Confidence 344444455555 3457999999999999999999987653
No 98
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=82.92 E-value=4.6 Score=24.93 Aligned_cols=70 Identities=6% Similarity=0.012 Sum_probs=42.8
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHHHh-CCCCCCCCCccHHH-HHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 11 SDIECVNQLRMDKRTFELLCGLLRI-NGGLKADGTVSIEE-QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 11 ~~~~c~~~fRM~~~~F~~L~~~L~~-~~~l~~s~~v~veE-~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
++.-+...++..+..-..+-..+.+ .+ +++..+ .+-..|+.- .+.+...++..++.|.+||++.++..-+
T Consensus 6 ~~~l~~~l~~~~~~~~~~~~~~l~~~~~------~lt~~~~~vL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~L~~ 77 (142)
T 3ech_A 6 NPDLMPALMAVFQHVRTRIQSELDCQRL------DLTPPDVHVLKLIDEQ-RGLNLQDLGRQMCRDKALITRKIRELEG 77 (142)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHTTC------CCCHHHHHHHHHHHHT-TTCCHHHHHHHHC---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccC------CCCHHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3455666666666666666666664 22 244444 333334332 3689999999999999999999876543
No 99
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=82.72 E-value=3.1 Score=26.75 Aligned_cols=76 Identities=13% Similarity=0.068 Sum_probs=48.2
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHhCCCCCC-------CCCccHHHHHHHHHHHhh-cCcchhhhhhcc----------
Q 036324 10 GSDIECVNQLRMDKRTFELLCGLLRINGGLKA-------DGTVSIEEQLCMFLHILA-HHVKSRTIHSRF---------- 71 (91)
Q Consensus 10 ~~~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~-------s~~v~veE~vamFL~i~~-~~~~~r~i~~~F---------- 71 (91)
.+..+.-..|.+++.|..+.....+..+.+.+ .+.++.++.-.+--++.. ...+.+.|...+
T Consensus 42 ~s~~~IA~~lgis~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~ 121 (159)
T 2k27_A 42 VRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDT 121 (159)
T ss_dssp CCHHHHHHHHTCCSHHHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTT
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCC
Confidence 35566778899999998887776655443332 123443333333222222 347788888776
Q ss_pred ccchhhHHHHHHHH
Q 036324 72 LRSRETISRYFNLV 85 (91)
Q Consensus 72 ~~S~eTisr~f~~V 85 (91)
..|.+||+|++++-
T Consensus 122 ~~S~sTV~r~L~~~ 135 (159)
T 2k27_A 122 VPSVSSINRIIRTK 135 (159)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHH
Confidence 48999999998864
No 100
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=82.55 E-value=4.3 Score=24.92 Aligned_cols=36 Identities=6% Similarity=0.044 Sum_probs=28.3
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
.+-..|+ ..+.+...++..++.|.+||++.+...-+
T Consensus 41 ~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le~ 76 (146)
T 2gxg_A 41 LVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLEE 76 (146)
T ss_dssp HHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHHH
Confidence 3334444 67789999999999999999999876543
No 101
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=82.06 E-value=1.8 Score=28.47 Aligned_cols=41 Identities=15% Similarity=0.203 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHH
Q 036324 48 EEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNA 88 (91)
Q Consensus 48 eE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~a 88 (91)
.-++.|..+......+...|+..++.|.+|||+++...-++
T Consensus 58 p~R~~IL~~L~~~~~t~~eLa~~lgls~stvs~hL~~L~~a 98 (151)
T 3f6v_A 58 PTRRRLVQLLTSGEQTVNNLAAHFPASRSAISQHLRVLTEA 98 (151)
T ss_dssp HHHHHHHHHGGGCCEEHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 33555655555566899999999999999999999876543
No 102
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=81.49 E-value=6.9 Score=24.12 Aligned_cols=43 Identities=14% Similarity=0.113 Sum_probs=30.4
Q ss_pred CccHHHHHH-HHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 44 TVSIEEQLC-MFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 44 ~v~veE~va-mFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
+++..+-.. .+|+. ..+.+...++..++.|++||++.+...-+
T Consensus 37 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 80 (148)
T 3nrv_A 37 GIGMTEWRIISVLSS-ASDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
T ss_dssp TCCHHHHHHHHHHHH-SSSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566655432 23332 23689999999999999999999876543
No 103
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=81.38 E-value=2.7 Score=23.87 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHH
Q 036324 47 IEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 47 veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
..+++--.|-.-+...+..+|+..++.|++||++.+...-
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~ 50 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLK 50 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3455544444333458899999999999999999987653
No 104
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=81.26 E-value=0.85 Score=26.26 Aligned_cols=21 Identities=33% Similarity=0.088 Sum_probs=18.3
Q ss_pred chhhhhhccccchhhHHHHHH
Q 036324 63 KSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 63 ~~r~i~~~F~~S~eTisr~f~ 83 (91)
+..+|+..-|.|..||||+++
T Consensus 2 T~~diA~~aGVS~sTVSrvLn 22 (65)
T 1uxc_A 2 KLDEIARLAGVSRTTASYVIN 22 (65)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHc
Confidence 457888999999999999886
No 105
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=81.24 E-value=0.67 Score=32.93 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=20.5
Q ss_pred cchhhhhhccccchhhHHHHHHH
Q 036324 62 VKSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 62 ~~~r~i~~~F~~S~eTisr~f~~ 84 (91)
.+-++|+...|.|..||||.++.
T Consensus 11 ~ti~diA~~agVS~~TVSr~Ln~ 33 (344)
T 3kjx_A 11 LTLRDVSEASGVSEMTVSRVLRN 33 (344)
T ss_dssp CCHHHHHHHHCCCSHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHcC
Confidence 56789999999999999999864
No 106
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=81.21 E-value=3.3 Score=26.72 Aligned_cols=42 Identities=12% Similarity=-0.010 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 47 IEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 47 veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
..++-++-| ....|.++..|+...+.|..||.+..+..+..+
T Consensus 143 ~~~r~vl~l-~~~~g~s~~EIA~~lgis~~tV~~~l~ra~~~L 184 (194)
T 1or7_A 143 EDLRMAITL-RELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 184 (194)
T ss_dssp HHHHHHHHH-HHTTCCCHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHH-HHHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 333433334 445789999999999999999999998877654
No 107
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=80.95 E-value=1.6 Score=29.22 Aligned_cols=43 Identities=19% Similarity=0.427 Sum_probs=33.9
Q ss_pred ccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 45 VSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 45 v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
.|-.|.= .|..++.|.++.+|+...+.|..||..|+..+.+.+
T Consensus 150 LT~rE~~--vL~~l~~g~s~~eIa~~l~is~~TV~~hi~~l~~KL 192 (225)
T 3c3w_A 150 LTDQERT--LLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKL 192 (225)
T ss_dssp SCHHHHH--HHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCHHHHH--HHHHHHCCCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 4444432 344567889999999999999999999999988764
No 108
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=80.56 E-value=3 Score=25.65 Aligned_cols=66 Identities=8% Similarity=0.132 Sum_probs=39.3
Q ss_pred HHHHHhCCCHHHHHHH-HHHHHhCCCCCCCCCccHHH-HHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 14 ECVNQLRMDKRTFELL-CGLLRINGGLKADGTVSIEE-QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 14 ~c~~~fRM~~~~F~~L-~~~L~~~~~l~~s~~v~veE-~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
-++...++.+..-..+ ...+.+. + ++..+ .+-.+|+. ..+.+...++..++.|..||++.+...-+
T Consensus 10 l~~~l~~~~~~~~~~~~~~~~~~~-~------l~~~~~~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~ 77 (142)
T 2bv6_A 10 LCFSLYNAQRQVNRYYSNKVFKKY-N------LTYPQFLVLTILWD-ESPVNVKKVVTELALDTGTVSPLLKRMEQ 77 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH-T------CCHHHHHHHHHHHH-SSEEEHHHHHHHTTCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhc-C------CCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 3444444444444444 4444432 2 34333 23333332 23579999999999999999999876543
No 109
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=80.46 E-value=3.6 Score=25.49 Aligned_cols=69 Identities=9% Similarity=0.031 Sum_probs=43.1
Q ss_pred hhHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhh-cCcchhhhhhccccchhhHHHHHHHHH
Q 036324 12 DIECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILA-HHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 12 ~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~-~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
...|.+.+++.......+-..+.+ +++.+ .+-.+..+|+.-. .+.+..+++..++.+.+||++.+...-
T Consensus 9 ~~~~~~l~~~~~~~~~~~~~~~~~-~~lt~-----~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le 78 (127)
T 2frh_A 9 INDCFELLSMVTYADKLKSLIKKE-FSISF-----EEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILS 78 (127)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHT-TCCCH-----HHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-cCCCH-----HHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345666666555544444444443 33322 2334555555421 458999999999999999999987653
No 110
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=80.37 E-value=3.9 Score=24.82 Aligned_cols=28 Identities=4% Similarity=-0.009 Sum_probs=24.1
Q ss_pred cCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
.+.+...++..++.|.+||++.++..-+
T Consensus 46 ~~~~~~ela~~l~~~~~tvs~~l~~L~~ 73 (139)
T 3bja_A 46 GKVSMSKLIENMGCVPSNMTTMIQRMKR 73 (139)
T ss_dssp CSEEHHHHHHHCSSCCTTHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 3579999999999999999999877543
No 111
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=79.82 E-value=4.1 Score=23.62 Aligned_cols=55 Identities=13% Similarity=0.107 Sum_probs=36.2
Q ss_pred HHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 26 FELLCGLLRINGGLKADGTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 26 F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
+..+.+.++. .++.+ .+-++-..|+. ..+.+...++..++.|..||++.++...+
T Consensus 6 ~~~~~~~l~~-~~l~~-----~~~~il~~l~~-~~~~s~~ela~~l~is~~tv~~~l~~L~~ 60 (109)
T 1sfx_A 6 LGELVKALEK-LSFKP-----SDVRIYSLLLE-RGGMRVSEIARELDLSARFVRDRLKVLLK 60 (109)
T ss_dssp HHHHHHHHHH-TCCCH-----HHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCH-----HHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4456666664 33322 23333333432 35689999999999999999999987654
No 112
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=79.45 E-value=2.5 Score=27.14 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=34.0
Q ss_pred ccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 45 VSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 45 v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
.+..++-++-| ..-.+.++..|+...|.|..||.+..+..+..+
T Consensus 136 L~~~~r~vl~l-~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~L 179 (184)
T 2q1z_A 136 LPEAQRALIER-AFFGDLTHRELAAETGLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp SCHHHHHHHHH-HHHSCCSSCCSTTTCCCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 44455554444 345789999999999999999999998887654
No 113
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=79.29 E-value=2.9 Score=24.73 Aligned_cols=25 Identities=12% Similarity=-0.033 Sum_probs=22.6
Q ss_pred cchhhhhhccccchhhHHHHHHHHH
Q 036324 62 VKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 62 ~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
.+...++..++.|.+||++.+...-
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le 55 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFE 55 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 7899999999999999999987654
No 114
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=79.28 E-value=2 Score=27.90 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=29.9
Q ss_pred HHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 55 LHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 55 L~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
|..++.|.++..|+...+.|..||..|...+.+.+
T Consensus 151 l~~l~~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl 185 (208)
T 1yio_A 151 LQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKL 185 (208)
T ss_dssp HHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCcHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 33457889999999999999999999998887765
No 115
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=79.16 E-value=3.1 Score=26.16 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=43.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHH-HHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 14 ECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEE-QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 14 ~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE-~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
-++..++..+.....+-..+...++ ++..+ .+-.+|+.-..+.+...++...+.|..||++.+...-+
T Consensus 20 ~~~~l~~~~~~~~~~~~~~l~~~~~------l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~ 88 (160)
T 3boq_A 20 LWLNILRLHGLVFGDLNRQLLDETG------LSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIK 88 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS------CCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 3455556666555566666662233 34333 23333333345789999999999999999999876543
No 116
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=78.64 E-value=6 Score=23.99 Aligned_cols=42 Identities=7% Similarity=-0.100 Sum_probs=30.2
Q ss_pred CccHHHH-HHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHH
Q 036324 44 TVSIEEQ-LCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 44 ~v~veE~-vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
.++..+- +-..|+. ..+.+...++..++.|.+||++.+...-
T Consensus 35 ~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~L~ 77 (140)
T 2nnn_A 35 GLTPTQWAALVRLGE-TGPCPQNQLGRLTAMDAATIKGVVERLD 77 (140)
T ss_dssp CCCHHHHHHHHHHHH-HSSBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5665543 3333333 2378999999999999999999987654
No 117
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=78.00 E-value=3.7 Score=25.60 Aligned_cols=39 Identities=5% Similarity=0.065 Sum_probs=28.4
Q ss_pred HHHHHHHHHHh--hcCcchhhhhhccccchhhHHHHHHHHH
Q 036324 48 EEQLCMFLHIL--AHHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 48 eE~vamFL~i~--~~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
+..+...+..+ ..+.+...++..++.|++||++.+...-
T Consensus 7 ~~~L~~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le 47 (142)
T 1on2_A 7 EMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKLD 47 (142)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 33444433333 3568999999999999999999887653
No 118
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=77.94 E-value=2.4 Score=24.34 Aligned_cols=41 Identities=10% Similarity=0.139 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHHhhcCcchhhhhhccc----cchhhHHHHHHHHHH
Q 036324 46 SIEEQLCMFLHILAHHVKSRTIHSRFL----RSRETISRYFNLVLN 87 (91)
Q Consensus 46 ~veE~vamFL~i~~~~~~~r~i~~~F~----~S~eTisr~f~~Vl~ 87 (91)
..+..|-.+||. ..+.+..+|++.++ .|..||++.++...+
T Consensus 9 ~~e~~vL~~L~~-~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~ 53 (82)
T 1p6r_A 9 DAELEVMKVIWK-HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIK 53 (82)
T ss_dssp HHHHHHHHHHHT-SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHH
Confidence 356677778887 55789999999997 589999999876543
No 119
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=77.65 E-value=3.2 Score=25.61 Aligned_cols=42 Identities=5% Similarity=0.225 Sum_probs=30.6
Q ss_pred CccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHH
Q 036324 44 TVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 44 ~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
+++..+- .+..++..++.+...++..++.|++||++.+...-
T Consensus 35 ~lt~~~~-~iL~~l~~~~~t~~eLa~~l~~s~~tvs~~l~~L~ 76 (146)
T 3tgn_A 35 ALTNTQE-HILMLLSEESLTNSELARRLNVSQAAVTKAIKSLV 76 (146)
T ss_dssp CCCHHHH-HHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHH-HHHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555443 33334444559999999999999999999987654
No 120
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=77.19 E-value=5.1 Score=24.96 Aligned_cols=29 Identities=10% Similarity=0.142 Sum_probs=24.6
Q ss_pred hcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 59 AHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 59 ~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
..+.+...++..++.|..||++.+...-+
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~ 87 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQA 87 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 34689999999999999999999876543
No 121
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=77.13 E-value=11 Score=23.48 Aligned_cols=65 Identities=11% Similarity=0.139 Sum_probs=39.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHH-HHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 15 CVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEE-QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 15 c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE-~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
++...+..+..-..+-..+.+ ++ ++..+ .+-.+|+. ..+.+...++..++.|++||++.+...-+
T Consensus 16 ~~~l~~~~~~~~~~~~~~~~~-~~------lt~~q~~iL~~l~~-~~~~~~~eLa~~l~~~~~~vs~~l~~L~~ 81 (149)
T 4hbl_A 16 CFSAYNVSRLFAQFYEKKLKQ-FG------ITYSQYLVMLTLWE-ENPQTLNSIGRHLDLSSNTLTPMLKRLEQ 81 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TT------CCHHHHHHHHHHHH-SSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cC------CCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344444444444444444443 33 44433 23333332 35689999999999999999999876543
No 122
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=77.04 E-value=3.4 Score=25.56 Aligned_cols=65 Identities=6% Similarity=0.033 Sum_probs=39.1
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 16 VNQLRMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 16 ~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
+...+..+..-..+-..+.+..+ ++.. +..+..++..++.+..+++..++.|++|||+.+...-+
T Consensus 12 ~~l~~~~~~~~~~~~~~l~~~~~------lt~~-~~~iL~~l~~~~~~~~~la~~l~~~~~tvs~~l~~Le~ 76 (144)
T 3f3x_A 12 NTIAKIYRGSIKEFNNRLGKLMN------LSYL-DFSILKATSEEPRSMVYLANRYFVTQSAITAAVDKLEA 76 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS------CCHH-HHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC------CCHH-HHHHHHHHHHCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 33444444444444455554312 3333 33444444444449999999999999999999876543
No 123
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=76.73 E-value=1.1 Score=31.66 Aligned_cols=23 Identities=26% Similarity=0.109 Sum_probs=20.3
Q ss_pred cchhhhhhccccchhhHHHHHHH
Q 036324 62 VKSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 62 ~~~r~i~~~F~~S~eTisr~f~~ 84 (91)
.+-++|+...|+|..||||.++.
T Consensus 3 ~ti~dvA~~agVS~~TVSrvln~ 25 (332)
T 2hsg_A 3 VTIYDVAREASVSMATVSRVVNG 25 (332)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 46789999999999999999863
No 124
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=76.40 E-value=9.6 Score=24.06 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=40.4
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHH-HHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 15 CVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEE-QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 15 c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE-~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
++...++.+..-..+-..+.+ +++ +..+ .+-..|+.- .+.+...++..++.|.+||++.+...-+
T Consensus 21 ~~~l~~~~~~~~~~~~~~l~~-~gl------t~~q~~iL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 86 (162)
T 3k0l_A 21 SYMIARVDRIISKYLTEHLSA-LEI------SLPQFTALSVLAAK-PNLSNAKLAERSFIKPQSANKILQDLLA 86 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TTC------CHHHHHHHHHHHHC-TTCCHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh-cCC------CHHHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444445555444445555544 333 3333 333333332 3689999999999999999999887543
No 125
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=76.12 E-value=5.5 Score=24.23 Aligned_cols=28 Identities=7% Similarity=0.058 Sum_probs=24.3
Q ss_pred cCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
.+.+...++..++.|.+||++.+...-+
T Consensus 49 ~~~t~~ela~~l~~s~~~vs~~l~~Le~ 76 (142)
T 2fbi_A 49 GEMESYQLANQACILRPSMTGVLARLER 76 (142)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 4689999999999999999999877543
No 126
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=76.02 E-value=5.6 Score=24.10 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=24.7
Q ss_pred hcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 59 AHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 59 ~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
..+.+...++..++.|.+||++.+...-+
T Consensus 41 ~~~~~~~ela~~l~~s~~tvs~~l~~L~~ 69 (138)
T 3bpv_A 41 EPGIKQDELATFFHVDKGTIARTLRRLEE 69 (138)
T ss_dssp STTCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999876543
No 127
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=75.85 E-value=3.5 Score=25.26 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=29.1
Q ss_pred HHHHHHHHHhh-cCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 49 EQLCMFLHILA-HHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 49 E~vamFL~i~~-~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
-.+-.+|+.-+ .+.+...++..++.|++||++.++..-+
T Consensus 34 ~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 73 (139)
T 3eco_A 34 GHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLER 73 (139)
T ss_dssp HHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHH
Confidence 33444444443 4789999999999999999999887543
No 128
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=75.77 E-value=12 Score=26.52 Aligned_cols=61 Identities=11% Similarity=0.085 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHhCCC--CCC----C--CCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHH
Q 036324 21 MDKRTFELLCGLLRINGG--LKA----D--GTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 21 M~~~~F~~L~~~L~~~~~--l~~----s--~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~ 84 (91)
+++.|+.+.....++ +. +.| . +.++.++-.++ + .-....+.+.++...+.|.+||+|+.++
T Consensus 41 vs~~tv~~w~~r~~~-g~~~l~~~~r~grp~~~~~~~i~~~-v-~~~~~~t~~~ia~~l~vs~~tV~r~L~~ 109 (345)
T 3hot_A 41 PTVKTCERWFQRFKS-GDFDVDDKEHGKPPKRYEDAELQAL-L-DEDDAQTQKQLAEQLEVSQQAVSNRLRE 109 (345)
T ss_dssp CCHHHHHHHHHHHTT-CCCCCSCCCCCCCCCSSCHHHHHHH-H-HHCSCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhC-CCccccCCCCCCCCCcccHHHHHHH-H-HhCccchHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999998875 42 332 1 13343333332 1 2334578999999999999999999886
No 129
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=75.22 E-value=1.7 Score=28.97 Aligned_cols=34 Identities=15% Similarity=0.285 Sum_probs=29.4
Q ss_pred HHHhhcCcchhhhhhccccchhhHHHHHHHHHHH
Q 036324 55 LHILAHHVKSRTIHSRFLRSRETISRYFNLVLNA 88 (91)
Q Consensus 55 L~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~a 88 (91)
|..++.|.++.+|+...+.|..||..|...+.+.
T Consensus 168 L~~l~~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~K 201 (225)
T 3klo_A 168 IKLLGSGASNIEIADKLFVSENTVKTHLHNVFKK 201 (225)
T ss_dssp HHHHTTTCCHHHHHHHTTCCHHHHHHHHHHHTTT
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4446789999999999999999999999887654
No 130
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=75.01 E-value=6.1 Score=24.29 Aligned_cols=28 Identities=4% Similarity=0.141 Sum_probs=24.3
Q ss_pred cCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
.+.+...++..++.|..||++.+....+
T Consensus 53 ~~~~~~~la~~l~~~~~tvs~~l~~L~~ 80 (147)
T 1z91_A 53 ETLTVKKMGEQLYLDSGTLTPMLKRMEQ 80 (147)
T ss_dssp SEEEHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCcCcHHHHHHHHHH
Confidence 3679999999999999999999887544
No 131
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=74.48 E-value=5.1 Score=24.95 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=30.4
Q ss_pred ccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHH
Q 036324 45 VSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 45 v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
++..+-..+..- -..+.+...++...+.|++|||+.+...-
T Consensus 36 lt~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le 76 (151)
T 3kp7_A 36 ISAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLL 76 (151)
T ss_dssp CCHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444333333 56678999999999999999999987654
No 132
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=74.41 E-value=6.4 Score=23.02 Aligned_cols=39 Identities=15% Similarity=0.313 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhh--cCcchhhhhhccccchhhHHHHHHHHH
Q 036324 48 EEQLCMFLHILA--HHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 48 eE~vamFL~i~~--~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
++++--+|-..+ ...+..+|+...+.|..||.+++...-
T Consensus 16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~ 56 (77)
T 1qgp_A 16 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA 56 (77)
T ss_dssp HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456665666555 257889999999999999999987654
No 133
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=74.41 E-value=0.88 Score=26.34 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=19.4
Q ss_pred cchhhhhhccccchhhHHHHHH
Q 036324 62 VKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 62 ~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+..+|+..-|.|..||||+++
T Consensus 10 ~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 10 ATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHc
Confidence 4678999999999999999875
No 134
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=74.29 E-value=8.2 Score=24.99 Aligned_cols=67 Identities=13% Similarity=0.007 Sum_probs=43.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhhc--CcchhhhhhccccchhhHHHHHHHHHH
Q 036324 15 CVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILAH--HVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 15 c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~--~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
+....|..+.....+-..+.. +++. ..+-.+...|+.-+. +.+...++...+.|.+||++.++..-+
T Consensus 44 ~~~l~~~~~~~~~~~~~~l~~-~glt-----~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~ 112 (181)
T 2fbk_A 44 LLLLERLHAALGREIERTYAA-SGLN-----AAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLE 112 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TTCC-----HHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCC-----HHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445555555555555555544 3332 233345555555443 389999999999999999999876543
No 135
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=74.17 E-value=11 Score=23.42 Aligned_cols=33 Identities=12% Similarity=0.034 Sum_probs=25.6
Q ss_pred HHHHhhcCcchhhhhhccccchhhHHHHHHHHH
Q 036324 54 FLHILAHHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 54 FL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
+|+.-+.+.+...++...+.|.+||++.+...-
T Consensus 47 ~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le 79 (150)
T 3fm5_A 47 LACEQAEGVNQRGVAATMGLDPSQIVGLVDELE 79 (150)
T ss_dssp HHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 333333356999999999999999999987643
No 136
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=74.17 E-value=1.4 Score=31.58 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=20.1
Q ss_pred cchhhhhhccccchhhHHHHHH
Q 036324 62 VKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 62 ~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+-++|+...|+|..||||.++
T Consensus 10 ~Ti~diA~~aGVS~~TVSrvLn 31 (366)
T 3h5t_A 10 GTLASIAAKLGISRTTVSNAYN 31 (366)
T ss_dssp THHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHC
Confidence 5678999999999999999996
No 137
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=73.87 E-value=4.8 Score=30.69 Aligned_cols=43 Identities=21% Similarity=0.209 Sum_probs=28.0
Q ss_pred HHHHHHHHHHH-h--hcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 47 IEEQLCMFLHI-L--AHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 47 veE~vamFL~i-~--~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
-.|+-.+-|+. + +.+.++..|+..|+.|.+||..+.+..+..+
T Consensus 363 ~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~erVrqi~~rAl~kL 408 (423)
T 2a6h_F 363 EREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKL 408 (423)
T ss_dssp HHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 33444444544 2 2789999999999999999999988887654
No 138
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=73.85 E-value=1.9 Score=25.48 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=20.7
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHHH
Q 036324 11 SDIECVNQLRMDKRTFELLCGLLR 34 (91)
Q Consensus 11 ~~~~c~~~fRM~~~~F~~L~~~L~ 34 (91)
++.++...|+|+++.|.+|=.+=+
T Consensus 35 sdedF~~vFgmsr~eF~~LP~WKq 58 (68)
T 1qzp_A 35 SAEDFSRVFAMSPEEFGKLALWKR 58 (68)
T ss_dssp CHHHHHHHSSSCHHHHHHSCHHHH
T ss_pred CHHHHHHHHCcCHHHHHHChHHHH
Confidence 689999999999999999876633
No 139
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=73.62 E-value=7.3 Score=23.64 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=24.3
Q ss_pred cCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
.+.+...++..++.|.+||++.+...-+
T Consensus 44 ~~~~~~ela~~l~is~~~vs~~l~~L~~ 71 (142)
T 3bdd_A 44 APLHQLALQERLQIDRAAVTRHLKLLEE 71 (142)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999876543
No 140
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=73.56 E-value=3.3 Score=28.01 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
+++-.|+-++ ...++..+++..+.|++|||+.+.+.
T Consensus 7 ~~l~~f~~v~-~~~s~s~AA~~L~isq~avS~~i~~L 42 (306)
T 3fzv_A 7 RQLKYFVTTV-ECGSVAEASRKLYIAQPSISTAVKGL 42 (306)
T ss_dssp HHHHHHHHHH-HSSSHHHHHHHHTCCC-CHHHHHHHH
T ss_pred HHHHHHHHHH-HhCCHHHHHHHhCCCchHHHHHHHHH
Confidence 4666666555 45599999999999999999999875
No 141
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=73.36 E-value=5.3 Score=30.96 Aligned_cols=45 Identities=20% Similarity=0.177 Sum_probs=34.1
Q ss_pred ccHHHHHHHHHHHh---hcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 45 VSIEEQLCMFLHIL---AHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 45 v~veE~vamFL~i~---~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
.+-.|+-.+-|+.. +.+.++..|+..++.|.+||..+.+..+..+
T Consensus 376 L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~erVRqi~~RAlkKL 423 (438)
T 1l9z_H 376 LSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKL 423 (438)
T ss_pred CCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 34445545555442 2789999999999999999999988877654
No 142
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=73.10 E-value=7.3 Score=22.21 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=28.2
Q ss_pred HHHHHHHHHhh---cCcchhhhhhcc-----ccchhhHHHHHHHHHH
Q 036324 49 EQLCMFLHILA---HHVKSRTIHSRF-----LRSRETISRYFNLVLN 87 (91)
Q Consensus 49 E~vamFL~i~~---~~~~~r~i~~~F-----~~S~eTisr~f~~Vl~ 87 (91)
.+.+|.-+... ...+..+|...+ +.|..||+|..+...+
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~ 64 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDD 64 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHH
Confidence 34444444433 457889999999 8999999999886544
No 143
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=73.07 E-value=9.6 Score=24.21 Aligned_cols=67 Identities=12% Similarity=0.114 Sum_probs=40.8
Q ss_pred hHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHH-HHHHHHHHh-hcCcchhhhhhccccchhhHHHHHHHHH
Q 036324 13 IECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEE-QLCMFLHIL-AHHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 13 ~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE-~vamFL~i~-~~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
.-++...+..+..-..+-..+.. ++ ++..+ .+-.+|+.- ..+.+...++..++.|..||++.+...-
T Consensus 19 ~~~~~l~~~~~~~~~~~~~~~~~-~g------lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le 87 (168)
T 3u2r_A 19 EAYLQLWRTYDRMKAIEEEIFSQ-FE------LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLD 87 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TT------CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh-cC------CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 44555555555555555555543 33 33333 344455554 2589999999999999999999987654
No 144
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=73.03 E-value=4.7 Score=27.76 Aligned_cols=42 Identities=21% Similarity=0.134 Sum_probs=34.2
Q ss_pred ccHHHHHHHHHHHhhc-Ccch--hhhhhccccchhhHHHHHHHHH
Q 036324 45 VSIEEQLCMFLHILAH-HVKS--RTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 45 v~veE~vamFL~i~~~-~~~~--r~i~~~F~~S~eTisr~f~~Vl 86 (91)
...+|++.-.||.++. +.+. ..++..++.|+.||++.++..-
T Consensus 5 t~~~e~~L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~Le 49 (230)
T 1fx7_A 5 VDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSRME 49 (230)
T ss_dssp SSHHHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3467888888998864 5566 9999999999999999887653
No 145
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=72.97 E-value=7.5 Score=23.95 Aligned_cols=28 Identities=4% Similarity=0.071 Sum_probs=24.4
Q ss_pred cCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
.+.+...++..++.|..||++.+...-+
T Consensus 55 ~~~t~~ela~~l~~~~~tvs~~l~~Le~ 82 (150)
T 2rdp_A 55 GDLTVGELSNKMYLACSTTTDLVDRMER 82 (150)
T ss_dssp CSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 4689999999999999999999877543
No 146
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=72.41 E-value=3.7 Score=28.20 Aligned_cols=40 Identities=13% Similarity=0.049 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHHhhcC-------cchhhhhhccccchhhHHHHHHHH
Q 036324 46 SIEEQLCMFLHILAHH-------VKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 46 ~veE~vamFL~i~~~~-------~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
+.+.++.+|..+.-.+ .+...++...+.|++||||.+...
T Consensus 5 ~~~~~l~~l~~l~~~~~l~~~~~~s~s~aA~~L~isq~avSr~I~~L 51 (230)
T 3cta_A 5 TDDQYYRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDL 51 (230)
T ss_dssp --CHHHHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccccCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4567888887764333 469999999999999999998765
No 147
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=72.40 E-value=5.6 Score=25.19 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=24.2
Q ss_pred hcCcchhhhhhccccchhhHHHHHHHHH
Q 036324 59 AHHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 59 ~~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
+.+.+.+.++..++.|+.||++.+...-
T Consensus 52 ~~~~~~~~la~~l~vs~~tvs~~l~~Le 79 (155)
T 2h09_A 52 VGEARQVDMAARLGVSQPTVAKMLKRLA 79 (155)
T ss_dssp HSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 3568999999999999999999987653
No 148
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=72.30 E-value=5.4 Score=24.13 Aligned_cols=39 Identities=13% Similarity=0.139 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhcCcchhhhhhccc----cchhhHHHHHHHHHH
Q 036324 48 EEQLCMFLHILAHHVKSRTIHSRFL----RSRETISRYFNLVLN 87 (91)
Q Consensus 48 eE~vamFL~i~~~~~~~r~i~~~F~----~S~eTisr~f~~Vl~ 87 (91)
+-.|-.+||. ..+.+...|+..++ .|.+||++.++...+
T Consensus 12 ~~~vL~~l~~-~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~ 54 (123)
T 1okr_A 12 EWEVMNIIWM-KKYASANNIIEEIQMQKDWSPKTIRTLITRLYK 54 (123)
T ss_dssp HHHHHHHHHH-HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHH
Confidence 4456666776 56799999999999 789999999887543
No 149
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=72.20 E-value=2.4 Score=22.56 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=22.4
Q ss_pred HhhcCcchhhhhhccccchhhHHHHHH
Q 036324 57 ILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 57 i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.-..|.+..+++...+.|.+||+++.+
T Consensus 10 r~~~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 10 REKKKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345678889999999999999999864
No 150
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=72.11 E-value=13 Score=22.73 Aligned_cols=26 Identities=12% Similarity=0.195 Sum_probs=23.5
Q ss_pred CcchhhhhhccccchhhHHHHHHHHH
Q 036324 61 HVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 61 ~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
+.+..+++..++.|.+|||+.+...-
T Consensus 45 ~~t~~eLa~~l~~~~~tvs~~l~~Le 70 (145)
T 3g3z_A 45 SRTQKHIGEKWSLPKQTVSGVCKTLA 70 (145)
T ss_dssp SBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 58999999999999999999987654
No 151
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=72.09 E-value=4.5 Score=23.78 Aligned_cols=27 Identities=11% Similarity=-0.063 Sum_probs=23.7
Q ss_pred Ccchhhhhhccccchhh-HHHHHHHHHH
Q 036324 61 HVKSRTIHSRFLRSRET-ISRYFNLVLN 87 (91)
Q Consensus 61 ~~~~r~i~~~F~~S~eT-isr~f~~Vl~ 87 (91)
+.+..+++..++.|..| |++.+...-+
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~ 57 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIR 57 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHH
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 58999999999999999 9999876543
No 152
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=72.01 E-value=4.7 Score=26.02 Aligned_cols=36 Identities=14% Similarity=0.054 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcCcchhhhhhcccc-chhhHHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLR-SRETISRYFNL 84 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~-S~eTisr~f~~ 84 (91)
|...-.+-.++.|.+-+.|...++. |.+||+++.++
T Consensus 16 e~~e~I~~~i~~G~sl~~i~~~~~~ps~~T~~~W~~~ 52 (140)
T 4dyq_A 16 EVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAK 52 (140)
T ss_dssp THHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcHHHHHhcCCCCCHHHHHHHHHc
Confidence 3333455666899999999999999 99999999765
No 153
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=71.91 E-value=6.4 Score=23.94 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=27.8
Q ss_pred HHHHHHHhhc-CcchhhhhhccccchhhHHHHHHHHHH
Q 036324 51 LCMFLHILAH-HVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 51 vamFL~i~~~-~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
+-.+|+.-+. +.+...++..++.|..||++.+...-+
T Consensus 39 iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~ 76 (141)
T 3bro_A 39 IIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEI 76 (141)
T ss_dssp HHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHH
Confidence 3444444332 589999999999999999999876543
No 154
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=71.86 E-value=8.1 Score=23.56 Aligned_cols=29 Identities=3% Similarity=0.006 Sum_probs=24.7
Q ss_pred hcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 59 AHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 59 ~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
..+.+...++..++.|.+||++.+...-+
T Consensus 45 ~~~~~~~~la~~l~~s~~tvs~~l~~L~~ 73 (145)
T 2a61_A 45 EGPKRPGELSVLLGVAKSTVTGLVKRLEA 73 (145)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHH
Confidence 34689999999999999999999876543
No 155
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=71.66 E-value=4.3 Score=27.24 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
+++-.|+-+.- ..++..++...+.|++|||+.+++.=+
T Consensus 4 ~~l~~f~~v~~-~gs~s~AA~~L~isq~avS~~i~~LE~ 41 (294)
T 1ixc_A 4 RQLKYFIAVAE-AGNMAAAAKRLHVSQPPITRQMQALEA 41 (294)
T ss_dssp HHHHHHHHHHH-HSSHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCHHHHHHHhCCCcchHHHHHHHHHH
Confidence 45666665544 559999999999999999999987533
No 156
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=71.66 E-value=7.8 Score=25.52 Aligned_cols=42 Identities=12% Similarity=0.169 Sum_probs=30.3
Q ss_pred ccHHHHH-HHHHHHh-hcCcchhhhhhccccchhhHHHHHHHHH
Q 036324 45 VSIEEQL-CMFLHIL-AHHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 45 v~veE~v-amFL~i~-~~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
++..+-. ..+|+.. ..+.+...++...+.|.+|||+.+...-
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le 82 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLE 82 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5544433 3344442 3579999999999999999999987654
No 157
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=71.45 E-value=0.82 Score=32.41 Aligned_cols=24 Identities=25% Similarity=0.126 Sum_probs=0.0
Q ss_pred CcchhhhhhccccchhhHHHHHHH
Q 036324 61 HVKSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 61 ~~~~r~i~~~F~~S~eTisr~f~~ 84 (91)
..+-++|+...|.|..||||.++.
T Consensus 4 ~~ti~diA~~agVS~~TVSr~Ln~ 27 (339)
T 3h5o_A 4 GVTMHDVAKAAGVSAITVSRVLNQ 27 (339)
T ss_dssp ------------------------
T ss_pred CCCHHHHHHHhCCCHHHHHHHHcC
Confidence 456789999999999999999973
No 158
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=71.41 E-value=8.7 Score=23.29 Aligned_cols=28 Identities=4% Similarity=0.115 Sum_probs=24.1
Q ss_pred cCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
.+.+...++...+.|.+||++.+...-+
T Consensus 47 ~~~~~~~la~~l~~~~~tvs~~l~~L~~ 74 (138)
T 1jgs_A 47 ACITPVELKKVLSVDLGALTRMLDRLVC 74 (138)
T ss_dssp SSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChHHHHHHHHHHHH
Confidence 4679999999999999999999876543
No 159
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=71.16 E-value=8.4 Score=22.54 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=22.9
Q ss_pred Ccchhhh----hhccccchhhHHHHHHHHHH
Q 036324 61 HVKSRTI----HSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 61 ~~~~r~i----~~~F~~S~eTisr~f~~Vl~ 87 (91)
+.+...+ +..++.|..||++.++..-+
T Consensus 22 ~~~~~el~~~la~~l~is~~tvs~~l~~Le~ 52 (99)
T 1tbx_A 22 GIATYDLYKKVNAEFPMSTATFYDAKKFLIQ 52 (99)
T ss_dssp TCBHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4788888 99999999999999887544
No 160
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=70.96 E-value=7.7 Score=23.80 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=30.4
Q ss_pred CccHHHHH-HHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 44 TVSIEEQL-CMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 44 ~v~veE~v-amFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
+++..+-. -.+|+. ..+.+...++...+.|.+||++.++..-+
T Consensus 34 ~lt~~~~~iL~~l~~-~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 77 (143)
T 3oop_A 34 DVTPEQWSVLEGIEA-NEPISQKEIALWTKKDTPTVNRIVDVLLR 77 (143)
T ss_dssp SSCHHHHHHHHHHHH-HSSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCcCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 35554433 233333 35789999999999999999999887543
No 161
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=70.91 E-value=5.9 Score=24.25 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=23.7
Q ss_pred CcchhhhhhccccchhhHHHHHHHHHH
Q 036324 61 HVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 61 ~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
+.+...++..++.|.+||++.+...-+
T Consensus 43 ~~t~~~la~~l~~s~~~vs~~l~~Le~ 69 (144)
T 1lj9_A 43 GIIQEKIAELIKVDRTTAARAIKRLEE 69 (144)
T ss_dssp TEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHhHHHHHHHHHHH
Confidence 579999999999999999999877543
No 162
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=70.74 E-value=7.5 Score=26.10 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhcC---cchhhhhhccc-cchhhHHHHHHHHHHH
Q 036324 49 EQLCMFLHILAHH---VKSRTIHSRFL-RSRETISRYFNLVLNA 88 (91)
Q Consensus 49 E~vamFL~i~~~~---~~~r~i~~~F~-~S~eTisr~f~~Vl~a 88 (91)
.+.+|+-+.++|+ .+-..+...++ .|..||+|+.+...++
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~ea 73 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDR 73 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHC
Confidence 6677777777764 45567777788 9999999999876553
No 163
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=70.52 E-value=14 Score=23.66 Aligned_cols=55 Identities=13% Similarity=0.102 Sum_probs=32.8
Q ss_pred HHHHHHhCCCCCCCCCccHHHHHHHHHHHhhcCcchhhhhhcc-----ccchhhHHHHHHHHHH
Q 036324 29 LCGLLRINGGLKADGTVSIEEQLCMFLHILAHHVKSRTIHSRF-----LRSRETISRYFNLVLN 87 (91)
Q Consensus 29 L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~~~~~r~i~~~F-----~~S~eTisr~f~~Vl~ 87 (91)
+-+.|+.++ ++.|. --++|.-.|..-....+-.+|.... ..|..||+|..+...+
T Consensus 9 ~~~~l~~~g-~r~T~---qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 68 (145)
T 2fe3_A 9 ALETLKETG-VRITP---QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRE 68 (145)
T ss_dssp HHHHHHHTT-CCCCH---HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCCCH---HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHH
Confidence 345566644 44432 2333333343333456777777776 7899999999876654
No 164
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=70.40 E-value=6.4 Score=24.01 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=27.9
Q ss_pred HHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 51 LCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 51 vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
+-.+|+.-..+.+...++..++.|.+||++.+...-+
T Consensus 42 iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~ 78 (146)
T 2fbh_A 42 VLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLES 78 (146)
T ss_dssp HHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 3333423345689999999999999999999876543
No 165
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=70.37 E-value=5.3 Score=25.55 Aligned_cols=42 Identities=5% Similarity=0.005 Sum_probs=30.5
Q ss_pred ccHHH-HHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHH
Q 036324 45 VSIEE-QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 45 v~veE-~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
+|..+ .+-.+|+..+.+.+..+++..++.+++|||+.+...-
T Consensus 29 Lt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le 71 (151)
T 4aik_A 29 LTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLE 71 (151)
T ss_dssp CCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44444 3444555555567778999999999999999987654
No 166
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=70.35 E-value=4.6 Score=26.05 Aligned_cols=44 Identities=7% Similarity=0.052 Sum_probs=31.0
Q ss_pred CccHHH-HHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 44 TVSIEE-QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 44 ~v~veE-~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
+++..+ .+-.+|+..+.+.+...++..++.|..||++.+...-+
T Consensus 50 glt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~ 94 (166)
T 3deu_A 50 ELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLED 94 (166)
T ss_dssp TCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHH
Confidence 355444 23333443345689999999999999999999876543
No 167
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=70.25 E-value=5.6 Score=26.84 Aligned_cols=37 Identities=14% Similarity=0.223 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
+++-.|+- ++...+++.++...+.|++|||+.+.+.=
T Consensus 6 ~~l~~f~~-v~~~gs~t~AA~~L~isq~avS~~i~~LE 42 (306)
T 3hhg_A 6 EELTVFVQ-VVESGSFSRAAEQLAMANSAVSRIVKRLE 42 (306)
T ss_dssp HHHHHHHH-HHHSSSHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHcCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45556654 45566999999999999999999998753
No 168
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=70.00 E-value=3.9 Score=29.51 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=23.2
Q ss_pred cCcchhhhhhccccchhhHHHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
.+.+.++++.+|+.|..||+|-+.+.
T Consensus 20 ~~~~~~ela~~l~vS~~tIrRdL~~l 45 (315)
T 2w48_A 20 QDMTQAQIARELGIYRTTISRLLKRG 45 (315)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45999999999999999999988754
No 169
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=69.78 E-value=2.1 Score=25.29 Aligned_cols=24 Identities=21% Similarity=0.144 Sum_probs=20.6
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHHH
Q 036324 11 SDIECVNQLRMDKRTFELLCGLLR 34 (91)
Q Consensus 11 ~~~~c~~~fRM~~~~F~~L~~~L~ 34 (91)
++.++...|+|+++.|.+|=.+=+
T Consensus 34 sdedF~~vFgms~~eF~~LP~WKq 57 (67)
T 1yu8_X 34 SDEDFKAVFGMTRSAFANLPLWKQ 57 (67)
T ss_dssp CHHHHHHHHSSCHHHHHTSCHHHH
T ss_pred CHHHHHHHHCcCHHHHHHChHHHH
Confidence 688999999999999999876633
No 170
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=69.74 E-value=8.5 Score=24.04 Aligned_cols=43 Identities=7% Similarity=0.184 Sum_probs=30.0
Q ss_pred CccHHHH-HHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 44 TVSIEEQ-LCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 44 ~v~veE~-vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
+++..+- +-.+|+.- .+.+...++..++.|..||++.+...-+
T Consensus 41 ~lt~~~~~iL~~l~~~-~~~t~~ela~~l~is~~tvs~~l~~Le~ 84 (154)
T 2eth_A 41 DMKTTELYAFLYVALF-GPKKMKEIAEFLSTTKSNVTNVVDSLEK 84 (154)
T ss_dssp HSBHHHHHHHHHHHHH-CCBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4554433 33333332 3689999999999999999999877543
No 171
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=69.56 E-value=8.2 Score=26.76 Aligned_cols=41 Identities=15% Similarity=0.265 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHhhc--CcchhhhhhccccchhhHHHHHHHHH
Q 036324 46 SIEEQLCMFLHILAH--HVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 46 ~veE~vamFL~i~~~--~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
+++..+.+.-+.-.+ +.+..+|+...+.|++||+|+.+...
T Consensus 6 sl~r~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~ 48 (249)
T 1mkm_A 6 TLKKAFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLE 48 (249)
T ss_dssp THHHHHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 566677776555443 48999999999999999999988654
No 172
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=69.50 E-value=8.1 Score=23.01 Aligned_cols=39 Identities=10% Similarity=-0.005 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHhhcC-cchhhhhhccccchhhHHHHHHH
Q 036324 46 SIEEQLCMFLHILAHH-VKSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 46 ~veE~vamFL~i~~~~-~~~r~i~~~F~~S~eTisr~f~~ 84 (91)
--|+++.-.+-.|-.| .|.+.++..||+...|+....++
T Consensus 14 Yte~~L~~Ai~aVr~g~mS~~~Aak~yGVP~sTL~~RVk~ 53 (70)
T 2cob_A 14 YNSEILEEAISVVMSGKMSVSKAQSIYGIPHSTLEYKVKE 53 (70)
T ss_dssp CCHHHHHHHHHHHHTTSSCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCccHHHHHHHhCCChHHHHHHHHh
Confidence 3467777777888888 89999999999999999887765
No 173
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=69.32 E-value=9.4 Score=23.86 Aligned_cols=66 Identities=14% Similarity=0.127 Sum_probs=40.8
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHH-HHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 15 CVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEE-QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 15 c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE-~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
++...+..+..-..+-+.+...++ ++..+ .+-..|+. ..+.+..+++..++.|..||++.+...-+
T Consensus 23 ~~~l~~~~~~~~~~~~~~l~~~~~------lt~~~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~ 89 (162)
T 2fa5_A 23 PYRLSVLSNRISGNIAKVYGDRYG------MAIPEWRVITILAL-YPGSSASEVSDRTAMDKVAVSRAVARLLE 89 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHHH-STTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444445555555555555523233 33333 33333443 34688999999999999999999876543
No 174
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=69.07 E-value=8.3 Score=24.19 Aligned_cols=29 Identities=14% Similarity=0.060 Sum_probs=24.6
Q ss_pred hcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 59 AHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 59 ~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
..+.+...++..++.|..||++.+...-+
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~ 92 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQA 92 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 34679999999999999999999876543
No 175
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=69.06 E-value=3.1 Score=22.53 Aligned_cols=27 Identities=7% Similarity=0.033 Sum_probs=22.1
Q ss_pred HhhcCcchhhhhhccccchhhHHHHHH
Q 036324 57 ILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 57 i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.-..|.+..+++...+.|.+||+++.+
T Consensus 12 r~~~glsq~~lA~~~gis~~~i~~~e~ 38 (71)
T 1zug_A 12 RIALKMTQTELATKAGVKQQSIQLIEA 38 (71)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 345678889999999999999998754
No 176
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=68.86 E-value=1 Score=31.81 Aligned_cols=22 Identities=36% Similarity=0.235 Sum_probs=0.0
Q ss_pred chhhhhhccccchhhHHHHHHH
Q 036324 63 KSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 63 ~~r~i~~~F~~S~eTisr~f~~ 84 (91)
+-++|+...|.|..||||.++.
T Consensus 4 ti~diA~~agVS~~TVSrvln~ 25 (330)
T 3ctp_A 4 NIREIAKRAGISIATVSRHLNN 25 (330)
T ss_dssp ----------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHcC
Confidence 5689999999999999999875
No 177
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=68.70 E-value=7.4 Score=24.10 Aligned_cols=28 Identities=11% Similarity=0.081 Sum_probs=24.1
Q ss_pred cCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
.+.+...++..++.|.+||++.+...-+
T Consensus 50 ~~~t~~ela~~l~~s~~tvs~~l~~Le~ 77 (155)
T 1s3j_A 50 GSLKVSEIAERMEVKPSAVTLMADRLEQ 77 (155)
T ss_dssp SEEEHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3579999999999999999999876543
No 178
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=68.66 E-value=1 Score=31.80 Aligned_cols=23 Identities=22% Similarity=-0.008 Sum_probs=0.0
Q ss_pred cchhhhhhccccchhhHHHHHHH
Q 036324 62 VKSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 62 ~~~r~i~~~F~~S~eTisr~f~~ 84 (91)
.+-++|+...|.|..||||.++.
T Consensus 6 ~ti~diA~~agVS~~TVSrvln~ 28 (332)
T 2o20_A 6 TTIYDVARVAGVSMATVSRVVNG 28 (332)
T ss_dssp -----------------------
T ss_pred CcHHHHHHHHCCCHHHHHHHHcC
Confidence 46789999999999999999885
No 179
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=68.58 E-value=5.3 Score=25.83 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 46 SIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 46 ~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
=++-...+|.-.= ++.+.++|+..=|.|..||++||.
T Consensus 25 Il~aA~~lf~~~G-~~~s~~~IA~~aGvs~~tlY~~F~ 61 (215)
T 2hku_A 25 LFTAATELFLEHG-EGVPITQICAAAGAHPNQVTYYYG 61 (215)
T ss_dssp HHHHHHHHHHHHC-TTSCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHHhC-CCcCHHHHHHHhCCCHHHHHHHcC
Confidence 3455556666555 889999999999999999999995
No 180
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=68.51 E-value=17 Score=22.11 Aligned_cols=29 Identities=3% Similarity=0.005 Sum_probs=24.9
Q ss_pred hcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 59 AHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 59 ~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
..+.+...++..++.|.+||++.+...-+
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~ 76 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELER 76 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHH
Confidence 45689999999999999999999877543
No 181
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=68.49 E-value=3.3 Score=22.30 Aligned_cols=27 Identities=7% Similarity=0.140 Sum_probs=22.2
Q ss_pred HhhcCcchhhhhhccccchhhHHHHHH
Q 036324 57 ILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 57 i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.-..|.+..+++...+.|..||+++.+
T Consensus 10 r~~~glsq~~lA~~~gis~~~i~~~e~ 36 (69)
T 1r69_A 10 RIQLGLNQAELAQKVGTTQQSIEQLEN 36 (69)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 445678889999999999999998753
No 182
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=68.40 E-value=16 Score=22.46 Aligned_cols=42 Identities=5% Similarity=0.163 Sum_probs=29.5
Q ss_pred ccHHH-HHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 45 VSIEE-QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 45 v~veE-~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
++..+ .+-..|+.- .+.+...++...+.|.+||++.+...-+
T Consensus 39 lt~~~~~iL~~l~~~-~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 81 (154)
T 2qww_A 39 LTIQQLAMINVIYST-PGISVADLTKRLIITGSSAAANVDGLIS 81 (154)
T ss_dssp CCHHHHHHHHHHHHS-TTEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44433 333344432 3589999999999999999999876543
No 183
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=67.92 E-value=5.4 Score=31.74 Aligned_cols=46 Identities=13% Similarity=0.131 Sum_probs=36.7
Q ss_pred CccHHHHHHHHHHHh---hcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 44 TVSIEEQLCMFLHIL---AHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 44 ~v~veE~vamFL~i~---~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
..|..++-.+-|+.. +.+.++..|+..|+.|.+||..+.+..++.+
T Consensus 550 ~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~kL 598 (613)
T 3iyd_F 550 GLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL 598 (613)
T ss_dssp SSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 466667766666554 2789999999999999999999998877654
No 184
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=67.86 E-value=9.2 Score=23.57 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=23.7
Q ss_pred cCcchhhhhhccccchhhHHHHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
.+.+...++..++.|.+||++.+...-
T Consensus 53 ~~~t~~ela~~l~~~~~~vs~~l~~Le 79 (152)
T 3bj6_A 53 PGATAPQLGAALQMKRQYISRILQEVQ 79 (152)
T ss_dssp TTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 368999999999999999999987654
No 185
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=67.82 E-value=7.6 Score=27.21 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=29.6
Q ss_pred CccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 44 TVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 44 ~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.++..|.-..+.-.+..+.+...|+..+|.|.+||+++..
T Consensus 117 ~L~~~E~a~~~~~l~~~g~t~~~iA~~lG~s~~~V~~~l~ 156 (230)
T 1vz0_A 117 DLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp TCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3444444334444448889999999999999999999875
No 186
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=67.60 E-value=5.1 Score=24.38 Aligned_cols=39 Identities=5% Similarity=0.052 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHH
Q 036324 46 SIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 46 ~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
+.-+++..+|.. .+.+...|+...+.|..||.+++...-
T Consensus 17 ~~~~~IL~lL~~--~g~sa~eLAk~LgiSk~aVr~~L~~Le 55 (82)
T 1oyi_A 17 EIVCEAIKTIGI--EGATAAQLTRQLNMEKREVNKALYDLQ 55 (82)
T ss_dssp HHHHHHHHHHSS--STEEHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455666677774 448999999999999999999987653
No 187
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=67.58 E-value=6.8 Score=26.71 Aligned_cols=38 Identities=18% Similarity=0.021 Sum_probs=29.1
Q ss_pred ccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 45 VSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 45 v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-++|+..| |.-.+..|.+...|+..+|.|..+|+++..
T Consensus 37 ~piE~A~a-~~~L~~~G~t~eeiA~~lG~s~s~V~~~Lr 74 (178)
T 1r71_A 37 TPREIADF-IGRELAKGKKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp CHHHHHHH-HHHHHHTTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred CHHHHHHH-HHHHHHcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34455444 445556689999999999999999999864
No 188
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=67.55 E-value=1.1 Score=32.04 Aligned_cols=23 Identities=17% Similarity=-0.031 Sum_probs=0.0
Q ss_pred cchhhhhhccccchhhHHHHHHH
Q 036324 62 VKSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 62 ~~~r~i~~~F~~S~eTisr~f~~ 84 (91)
.+-++|+...|.|..||||.++.
T Consensus 9 ~ti~dvA~~aGVS~~TVSrvLn~ 31 (348)
T 3bil_A 9 PTLKDVARQAGVSIATASRALAD 31 (348)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCCCHHHHHHHHCC
Confidence 36789999999999999999875
No 189
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=67.42 E-value=5.3 Score=25.27 Aligned_cols=35 Identities=6% Similarity=0.059 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-.+.+|.-.=-++.+.++|+.+=|.|+.|+++||.
T Consensus 15 aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~ 49 (192)
T 2zcm_A 15 NAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYD 49 (192)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHTC
T ss_pred HHHHHHHHcCcccCCHHHHHHHhCCChHHHHHHCC
Confidence 34444444333678999999999999999999994
No 190
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=67.36 E-value=7.2 Score=25.42 Aligned_cols=37 Identities=5% Similarity=-0.129 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
.++..|+-+.-+ .++..++...+.|.++||+.+.+.=
T Consensus 27 ~~L~~f~av~e~-gS~s~AA~~L~iSqsavS~~I~~LE 63 (135)
T 2ijl_A 27 GKVELMQLIAET-GSISAAGRAMDMSYRRAWLLVDALN 63 (135)
T ss_dssp HHHHHHHHHHHH-SCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 577777766665 5999999999999999999998753
No 191
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=67.31 E-value=2 Score=25.39 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.0
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHH
Q 036324 11 SDIECVNQLRMDKRTFELLCGLL 33 (91)
Q Consensus 11 ~~~~c~~~fRM~~~~F~~L~~~L 33 (91)
++.++...|+|+++.|.+|=.+=
T Consensus 34 sdedF~~vFgmsr~eF~~LP~WK 56 (67)
T 2k6m_S 34 TDEDFEFALDMTRDEYNALPAWK 56 (67)
T ss_dssp CHHHHHHHTSSCHHHHTTSCHHH
T ss_pred CHHHHHHHHCcCHHHHHHCcHHH
Confidence 68899999999999999886653
No 192
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=67.30 E-value=2.2 Score=25.75 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=18.9
Q ss_pred chhhhhhccccchhhHHHHHHH
Q 036324 63 KSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 63 ~~r~i~~~F~~S~eTisr~f~~ 84 (91)
+.+.++..|+.|..||++.+..
T Consensus 37 s~~eLa~~~~vSr~tvr~al~~ 58 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSRALAV 58 (102)
T ss_dssp CHHHHHHHSSSCTTHHHHHTTT
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 6778899999999999987654
No 193
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=67.20 E-value=2.7 Score=26.29 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=24.0
Q ss_pred HHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 56 HILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 56 ~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
..-..|.+..+++..+|.|..|||++=.
T Consensus 79 ~R~~~glsq~~la~~~g~s~~~i~~~E~ 106 (133)
T 3o9x_A 79 VRKKLSLTQKEASEIFGGGVNAFSRYEK 106 (133)
T ss_dssp HHHHTTCCHHHHHHHHCSCTTHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 3456789999999999999999999743
No 194
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=67.15 E-value=9.1 Score=23.55 Aligned_cols=64 Identities=9% Similarity=0.130 Sum_probs=38.4
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHHH-HHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHH
Q 036324 15 CVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEEQ-LCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 15 c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE~-vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
++...+..+..-..+-..+.+ ++ ++..+- +-.+|+. ..+.+..+++...+.|++||++.+...-
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~-~g------lt~~q~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~ 75 (140)
T 3hsr_A 11 CFLFYVSSKEIIKKYTNYLKE-YD------LTYTGYIVLMAIEN-DEKLNIKKLGERVFLDSGTLTPLLKKLE 75 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHGG-GT------CCHHHHHHHHHSCT-TCEEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cC------CCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 344444444444455555543 32 444332 2222222 2357899999999999999999987654
No 195
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=67.12 E-value=3.1 Score=22.28 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=21.5
Q ss_pred hhcCcchhhhhhccccchhhHHHHHH
Q 036324 58 LAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 58 ~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-..|.+..+++...+.|..||+++.+
T Consensus 15 ~~~g~s~~~lA~~~gis~~~i~~~e~ 40 (68)
T 2r1j_L 15 KKLKIRQAALGKMVGVSNVAISQWER 40 (68)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHc
Confidence 44577888999999999999998764
No 196
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=66.81 E-value=1.2 Score=29.66 Aligned_cols=45 Identities=22% Similarity=0.277 Sum_probs=0.0
Q ss_pred CccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 44 TVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 44 ~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
..+..++-.+-|+. ..+.++..|+..+|.|.+||.+..+..+..+
T Consensus 198 ~L~~~~r~vl~l~~-~~g~s~~EIA~~lgis~~tV~~~~~ra~~~L 242 (243)
T 1l0o_C 198 ELDERERLIVYLRY-YKDQTQSEVASRLGISQVQMSRLEKKILQHI 242 (243)
T ss_dssp ----------------------------------------------
T ss_pred hCCHHHHHHHHHHH-hcCCCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 45556665555533 4789999999999999999999988776543
No 197
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=66.81 E-value=1.2 Score=31.85 Aligned_cols=23 Identities=26% Similarity=0.109 Sum_probs=0.0
Q ss_pred cchhhhhhccccchhhHHHHHHH
Q 036324 62 VKSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 62 ~~~r~i~~~F~~S~eTisr~f~~ 84 (91)
.+-++|+...|.|..||||.++.
T Consensus 4 ~ti~diA~~aGVS~~TVSrvLn~ 26 (349)
T 1jye_A 4 VTLYDVAEYAGVSYQTVSRVVNQ 26 (349)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHhCCCHHHHHHHHcC
Confidence 46789999999999999999874
No 198
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=66.72 E-value=4.2 Score=26.69 Aligned_cols=42 Identities=14% Similarity=0.003 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH---HHHHHHh
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN---LVLNAIL 90 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~---~Vl~ai~ 90 (91)
-....|.-.==++.+.++|+..=|.|+.|+++||. +++.+++
T Consensus 17 aA~~lf~~~Gy~~ts~~~IA~~AGvskgtlY~~F~sKe~L~~~~~ 61 (215)
T 1ui5_A 17 AAADLFDRRGYESTTLSEIVAHAGVTKGALYFHFAAKEDLAHAIL 61 (215)
T ss_dssp HHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHhCcccCCHHHHHHHhCCCchhhHhhCCCHHHHHHHHH
Confidence 34445544433679999999999999999999996 5555543
No 199
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=66.72 E-value=11 Score=22.52 Aligned_cols=29 Identities=10% Similarity=0.224 Sum_probs=22.7
Q ss_pred hhcCcchhhhhhccccchhhHHHHHHHHH
Q 036324 58 LAHHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 58 ~~~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
...+.+-.+++..++.|..+++|.|++..
T Consensus 18 ~~~~~~~~~lA~~~~~S~~~l~r~fk~~~ 46 (108)
T 3oou_A 18 FSEGMSLKTLGNDFHINAVYLGQLFQKEM 46 (108)
T ss_dssp TTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34566777888889999999999988763
No 200
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=66.68 E-value=11 Score=22.32 Aligned_cols=40 Identities=15% Similarity=0.289 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhh--cCcchhhhhhccccchhhHHHHHHHHH
Q 036324 47 IEEQLCMFLHILA--HHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 47 veE~vamFL~i~~--~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
.++++--+|-.-+ ...+...|+..++.|..||.+++...-
T Consensus 11 ~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le 52 (81)
T 1qbj_A 11 QEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA 52 (81)
T ss_dssp HHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3555555555444 347889999999999999999987653
No 201
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=66.60 E-value=1.2 Score=31.46 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=0.0
Q ss_pred cchhhhhhccccchhhHHHHHHH
Q 036324 62 VKSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 62 ~~~r~i~~~F~~S~eTisr~f~~ 84 (91)
.+-++|+...|.|..||||.++.
T Consensus 4 ~ti~diA~~agVS~~TVSrvln~ 26 (338)
T 3dbi_A 4 TTMLEVAKRAGVSKATVSRVLSG 26 (338)
T ss_dssp -----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHCC
Confidence 35689999999999999999875
No 202
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=66.47 E-value=1.2 Score=31.65 Aligned_cols=22 Identities=14% Similarity=-0.011 Sum_probs=0.0
Q ss_pred cchhhhhhccccchhhHHHHHH
Q 036324 62 VKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 62 ~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+-++|+...|.|..||||.++
T Consensus 7 ~ti~diA~~agVS~~TVSr~Ln 28 (333)
T 3jvd_A 7 SSLKEVAELAGVGYATASRALS 28 (333)
T ss_dssp ----------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHc
Confidence 5678999999999999999997
No 203
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=66.35 E-value=5.4 Score=25.50 Aligned_cols=45 Identities=7% Similarity=-0.003 Sum_probs=35.3
Q ss_pred CccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 44 TVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 44 ~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
..+..++-+ |+..--.|.++..|+...|.|..||....+.....+
T Consensus 93 ~Lp~~~r~v-l~L~~~~g~s~~EIA~~lgis~~tV~~~l~rar~~L 137 (157)
T 2lfw_A 93 RMTPLSRQA-LLLTAMEGFSPEDAAYLIEVDTSEVETLVTEALAEI 137 (157)
T ss_dssp TSCTTHHHH-HTTTSSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHH-HHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 456666654 444456689999999999999999999998877665
No 204
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=66.32 E-value=7.1 Score=24.18 Aligned_cols=38 Identities=8% Similarity=0.104 Sum_probs=22.9
Q ss_pred HHHHHHHHhh-cCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 50 QLCMFLHILA-HHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 50 ~vamFL~i~~-~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
.+-.+|+.-+ .+.+..+++..++.|.+||++.+...-+
T Consensus 45 ~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~ 83 (148)
T 3jw4_A 45 RMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEK 83 (148)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHH
Confidence 3444455433 5789999999999999999999876543
No 205
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=66.11 E-value=4.4 Score=25.25 Aligned_cols=37 Identities=8% Similarity=-0.013 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 47 IEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 47 veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++-.+.+|.-.=-++.+.++|+..=|.|..|+++||.
T Consensus 16 l~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~ 52 (191)
T 3on4_A 16 LAVAEALIQKDGYNAFSFKDIATAINIKTASIHYHFP 52 (191)
T ss_dssp HHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHhCcccCCHHHHHHHhCCCcchhhhcCC
Confidence 3444555554444679999999999999999999995
No 206
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=65.87 E-value=5.8 Score=26.97 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
+++-.|+-+ +...++..++...+.|++|||+.+++.=+
T Consensus 13 ~~L~~f~~v-~~~gs~s~AA~~L~isq~avS~~I~~LE~ 50 (310)
T 2esn_A 13 NLLLVFDAL-YRHRNVGTAASELAISASAFSHALGRLRQ 50 (310)
T ss_dssp THHHHHHHH-HHHSSHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHcCCHHHHHHHhCCChHHHHHHHHHHHH
Confidence 467666654 45559999999999999999999987533
No 207
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=65.66 E-value=19 Score=22.30 Aligned_cols=26 Identities=8% Similarity=0.061 Sum_probs=23.1
Q ss_pred CcchhhhhhccccchhhHHHHHHHHH
Q 036324 61 HVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 61 ~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
+.+...++...+.|..||++.+...-
T Consensus 57 ~~t~~ela~~l~i~~~tvs~~l~~Le 82 (155)
T 3cdh_A 57 AMMITRLAKLSLMEQSRMTRIVDQMD 82 (155)
T ss_dssp CBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 57999999999999999999987654
No 208
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=65.54 E-value=11 Score=22.48 Aligned_cols=27 Identities=11% Similarity=0.010 Sum_probs=20.7
Q ss_pred hcCcchhhhhhccccchhhHHHHHHHH
Q 036324 59 AHHVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 59 ~~~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
..+.+-.+++..++.|..+++|.|++.
T Consensus 16 ~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 16 MRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 344566777888888888888888875
No 209
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=65.50 E-value=10 Score=25.24 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=31.2
Q ss_pred HHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 53 MFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 53 mFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
-.+..++.+.++..|+..++.|..||..++..+++.+
T Consensus 205 ~i~~~~~~g~~~~eia~~l~~s~~tv~~~l~~i~~kl 241 (258)
T 3p7n_A 205 EVTTLVASGLRNKEVAARLGLSEKTVKMHRGLVMEKL 241 (258)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 3444566899999999999999999999999888754
No 210
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=65.34 E-value=9.5 Score=25.40 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=23.3
Q ss_pred CcchhhhhhccccchhhHHHHHHHHHH
Q 036324 61 HVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 61 ~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
..+...++..|+.|..||.|.+...-+
T Consensus 36 ~~s~~eLa~~l~vS~~Ti~rdi~~L~~ 62 (187)
T 1j5y_A 36 PVSGAQLAEELSVSRQVIVQDIAYLRS 62 (187)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 478999999999999999999986533
No 211
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=65.31 E-value=16 Score=23.03 Aligned_cols=65 Identities=8% Similarity=0.191 Sum_probs=42.2
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHH-HHHHHHHHh-hcCcchhhhhhccccchhhHHHHHHHHH
Q 036324 15 CVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEE-QLCMFLHIL-AHHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 15 c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE-~vamFL~i~-~~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
+...+|..+.....+-..|++. + ++..+ .+-..|+.- +.+.+...++...+.+++||++.+...-
T Consensus 10 ~~~l~R~~~~l~~~~~~~l~~~-g------Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le 76 (147)
T 4b8x_A 10 ITSIMRAQQILLGEVDAVVKPY-G------LTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLV 76 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGG-T------CCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-C------CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445666655556666666653 2 44444 233344433 2347899999999999999999987654
No 212
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=65.28 E-value=1.3 Score=31.61 Aligned_cols=22 Identities=32% Similarity=0.273 Sum_probs=0.0
Q ss_pred cchhhhhhccccchhhHHHHHH
Q 036324 62 VKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 62 ~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+-++|+...|.|..||||.++
T Consensus 13 ~ti~diA~~agVS~~TVSr~Ln 34 (355)
T 3e3m_A 13 VTMRDVAKAAGVSRMTVSRALK 34 (355)
T ss_dssp ----------------------
T ss_pred CcHHHHHHHhCCCHHHHHHHHC
Confidence 4678999999999999999997
No 213
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=65.16 E-value=4.3 Score=22.89 Aligned_cols=27 Identities=15% Similarity=0.074 Sum_probs=23.0
Q ss_pred HHhhcCcchhhhhhccccchhhHHHHH
Q 036324 56 HILAHHVKSRTIHSRFLRSRETISRYF 82 (91)
Q Consensus 56 ~i~~~~~~~r~i~~~F~~S~eTisr~f 82 (91)
..-..|.+..+++...+.|..||+++=
T Consensus 19 ~R~~~gltq~elA~~~gvs~~tis~~E 45 (73)
T 3fmy_A 19 VRKKLSLTQKEASEIFGGGVNAFSRYE 45 (73)
T ss_dssp HHHHTTCCHHHHHHHHCSCTTHHHHHH
T ss_pred HHHHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 345678999999999999999999874
No 214
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=64.91 E-value=6.6 Score=22.50 Aligned_cols=27 Identities=7% Similarity=0.142 Sum_probs=23.1
Q ss_pred HhhcCcchhhhhhccccchhhHHHHHH
Q 036324 57 ILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 57 i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.-..|.+..+++...|.|..||+++-+
T Consensus 26 R~~~glsq~~lA~~~gis~~~is~~e~ 52 (92)
T 1lmb_3 26 KNELGLSQESVADKMGMGQSGVGALFN 52 (92)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 356788999999999999999999854
No 215
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=64.90 E-value=6.2 Score=23.10 Aligned_cols=21 Identities=0% Similarity=0.003 Sum_probs=19.0
Q ss_pred chhhhhhccccchhhHHHHHH
Q 036324 63 KSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 63 ~~r~i~~~F~~S~eTisr~f~ 83 (91)
+...++...|.|++|||+.++
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~ 32 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQ 32 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHh
Confidence 488999999999999999975
No 216
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=64.68 E-value=7.8 Score=24.98 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 48 EEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 48 eE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+-...+|.-.==++.+.++|+..=|.|+.|+++||.
T Consensus 15 ~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tiY~~F~ 50 (202)
T 2d6y_A 15 EAAVAEFARHGIAGARIDRIAAEARANKQLIYAYYG 50 (202)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 334445544333579999999999999999999994
No 217
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=64.45 E-value=5.4 Score=22.57 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=22.7
Q ss_pred HhhcCcchhhhhhccccchhhHHHHHH
Q 036324 57 ILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 57 i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.-..|.+..+++...+.|.+||+++.+
T Consensus 21 r~~~glsq~~lA~~~gis~~~i~~~e~ 47 (88)
T 2wiu_B 21 RQQNGWTQSELAKKIGIKQATISNFEN 47 (88)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 345678889999999999999999875
No 218
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=64.22 E-value=8.2 Score=26.25 Aligned_cols=38 Identities=11% Similarity=0.080 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
+++-.|+- ++...+++.++.+.+.|++|||+.+.+.=+
T Consensus 5 ~~L~~f~~-v~~~gs~t~AA~~L~isq~avS~~i~~LE~ 42 (305)
T 3fxq_A 5 QTLQALIC-IEEVGSLRAAAQLLHLSQPALSAAIQQLED 42 (305)
T ss_dssp HHHHHHHH-HHHHSCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHcCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45666664 445569999999999999999999987533
No 219
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=64.17 E-value=4 Score=23.10 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=21.1
Q ss_pred hcCcchhhhhhccccchhhHHHHHH
Q 036324 59 AHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 59 ~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
..| +...++...|.|..|||++.+
T Consensus 10 ~~g-sq~~lA~~lgvs~~~is~~e~ 33 (79)
T 3bd1_A 10 KLG-SVSALAASLGVRQSAISNWRA 33 (79)
T ss_dssp HHS-SHHHHHHHHTCCHHHHHHHHH
T ss_pred HhC-CHHHHHHHHCCCHHHHHHHHH
Confidence 346 899999999999999999876
No 220
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=64.16 E-value=12 Score=22.95 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=25.1
Q ss_pred HHhhc-Ccc--hhhhhhcc-ccchhhHHHHHHHHHH
Q 036324 56 HILAH-HVK--SRTIHSRF-LRSRETISRYFNLVLN 87 (91)
Q Consensus 56 ~i~~~-~~~--~r~i~~~F-~~S~eTisr~f~~Vl~ 87 (91)
+.+.+ +.+ +.+++... +.|..|+|++....-+
T Consensus 34 ~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~ 69 (111)
T 3df8_A 34 SVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLID 69 (111)
T ss_dssp HHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 33444 455 89999999 9999999999887544
No 221
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=64.14 E-value=4.4 Score=22.32 Aligned_cols=27 Identities=15% Similarity=-0.058 Sum_probs=21.6
Q ss_pred HhhcCcchhhhhhccccchhhHHHHHH
Q 036324 57 ILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 57 i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.-..|.+..+++...+.|.+||+++.+
T Consensus 19 r~~~glsq~~lA~~~gis~~~i~~~e~ 45 (77)
T 2b5a_A 19 RTQKGVSQEELADLAGLHRTYISEVER 45 (77)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHHC
Confidence 345678888899999999999998754
No 222
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=64.12 E-value=12 Score=23.82 Aligned_cols=22 Identities=9% Similarity=0.022 Sum_probs=16.8
Q ss_pred chhhhhhccccchhhHHHHHHH
Q 036324 63 KSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 63 ~~r~i~~~F~~S~eTisr~f~~ 84 (91)
+-+.++..|+.|+.||.+.+..
T Consensus 30 se~~La~~~gvSr~tVr~Al~~ 51 (129)
T 2ek5_A 30 STNELAAFHRINPATARNGLTL 51 (129)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHH
Confidence 3455678999999999877654
No 223
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=63.92 E-value=11 Score=23.68 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=27.6
Q ss_pred HHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 51 LCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 51 vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
+-.+|+.- .+.+...++..++.|..||++.+...-+
T Consensus 58 vL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~Le~ 93 (161)
T 3e6m_A 58 LLSSLSAY-GELTVGQLATLGVMEQSTTSRTVDQLVD 93 (161)
T ss_dssp HHHHHHHH-SEEEHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444443 3789999999999999999999876543
No 224
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=63.90 E-value=4.3 Score=23.28 Aligned_cols=27 Identities=4% Similarity=-0.011 Sum_probs=22.5
Q ss_pred HhhcCcchhhhhhccccchhhHHHHHH
Q 036324 57 ILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 57 i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.-..|.+..+++...+.|..|||++.+
T Consensus 27 r~~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 27 LRNSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345678899999999999999999764
No 225
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=63.31 E-value=5.1 Score=21.78 Aligned_cols=26 Identities=12% Similarity=-0.072 Sum_probs=21.2
Q ss_pred hhcCcchhhhhhccccchhhHHHHHH
Q 036324 58 LAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 58 ~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-..|.+..+++...|.|.+||+++.+
T Consensus 23 ~~~g~s~~~lA~~~gis~~~i~~~e~ 48 (74)
T 1y7y_A 23 TAKGLSQETLAFLSGLDRSYVGGVER 48 (74)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 44678888899999999999998753
No 226
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=63.29 E-value=4.4 Score=22.37 Aligned_cols=26 Identities=8% Similarity=0.164 Sum_probs=22.7
Q ss_pred hhcCcchhhhhhccccchhhHHHHHH
Q 036324 58 LAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 58 ~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-..|.+..+++..-|.|..||+++.+
T Consensus 18 ~~~glsq~~lA~~~gis~~~is~~e~ 43 (73)
T 3omt_A 18 AEKGKTNLWLTETLDKNKTTVSKWCT 43 (73)
T ss_dssp HHHTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45678999999999999999999864
No 227
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=63.24 E-value=1.5 Score=29.39 Aligned_cols=26 Identities=8% Similarity=0.066 Sum_probs=0.0
Q ss_pred hcCcchhhhhhccccchhhHHHHHHH
Q 036324 59 AHHVKSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 59 ~~~~~~r~i~~~F~~S~eTisr~f~~ 84 (91)
..|.+.+.|+..++.|.+||+|+..+
T Consensus 156 ~~G~s~~~Ia~~l~vs~~Tvyr~l~~ 181 (193)
T 3uj3_X 156 AQGIPRKQVALIYDVALSTLYKKHPA 181 (193)
T ss_dssp --------------------------
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 46789999999999999999999865
No 228
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=63.19 E-value=5.1 Score=22.09 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=21.0
Q ss_pred hhcCcchhhhhhccccchhhHHHHHH
Q 036324 58 LAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 58 ~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-..|.+..+++...|.|.+||+++.+
T Consensus 17 ~~~g~sq~~lA~~~gis~~~i~~~e~ 42 (78)
T 3b7h_A 17 TQQNLTINRVATLAGLNQSTVNAMFE 42 (78)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45677888889999999999988753
No 229
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=63.18 E-value=3.4 Score=23.42 Aligned_cols=25 Identities=8% Similarity=0.224 Sum_probs=21.7
Q ss_pred hcCcchhhhhhccccchhhHHHHHH
Q 036324 59 AHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 59 ~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
..|.+..+++...|.|..|||++.+
T Consensus 23 ~~gltq~~lA~~~gvs~~~is~~e~ 47 (80)
T 3kz3_A 23 ELGLSYESVADKMGMGQSAVAALFN 47 (80)
T ss_dssp HHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 4678999999999999999999754
No 230
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=62.60 E-value=4.9 Score=22.06 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=22.0
Q ss_pred hhcCcchhhhhhccccchhhHHHHHH
Q 036324 58 LAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 58 ~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-..|.+..+++...|.|..||+++.+
T Consensus 20 ~~~g~s~~~lA~~~gis~~~i~~~e~ 45 (76)
T 3bs3_A 20 AEKQRTNRWLAEQMGKSENTISRWCS 45 (76)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45678889999999999999998764
No 231
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=62.59 E-value=11 Score=26.35 Aligned_cols=42 Identities=19% Similarity=0.086 Sum_probs=36.2
Q ss_pred CCccHHHHHHHHHHHhhcC--cchhhhhhccccchhhHHHHHHH
Q 036324 43 GTVSIEEQLCMFLHILAHH--VKSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 43 ~~v~veE~vamFL~i~~~~--~~~r~i~~~F~~S~eTisr~f~~ 84 (91)
+.+|--|+=-.++-.+..+ .++++++.+++.|...|||++.-
T Consensus 22 rplS~yErg~~y~r~L~~g~~~~Q~~lA~~~giS~a~VSR~L~~ 65 (189)
T 3mky_B 22 RPTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCINT 65 (189)
T ss_dssp -CCCHHHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCcccCHHHHHHHHCCCHHHHHHHHHH
Confidence 5688888888888888766 89999999999999999999863
No 232
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=62.54 E-value=4.1 Score=22.30 Aligned_cols=26 Identities=12% Similarity=0.068 Sum_probs=21.5
Q ss_pred hhcCcchhhhhhccccchhhHHHHHH
Q 036324 58 LAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 58 ~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-..|.+..+++...+.|.+||+++.+
T Consensus 15 ~~~gls~~~lA~~~gis~~~i~~~e~ 40 (76)
T 1adr_A 15 KKLKIRQAALGKMVGVSNVAISQWER 40 (76)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 44678889999999999999998754
No 233
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=62.25 E-value=3.4 Score=25.98 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 47 IEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 47 veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++-.+.+|.-. ++.+.++|...=|.|..|+++||.
T Consensus 20 l~aA~~lf~~~--~~~t~~~Ia~~agvs~~t~Y~~F~ 54 (190)
T 2v57_A 20 LDAAMLVLADH--PTAALGDIAAAAGVGRSTVHRYYP 54 (190)
T ss_dssp HHHHHHHHTTC--TTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHc--CCCCHHHHHHHhCCCHHHHHHHcC
Confidence 33444555554 789999999999999999999994
No 234
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=62.22 E-value=8.1 Score=26.54 Aligned_cols=41 Identities=20% Similarity=0.123 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHhhc-Ccch--hhhhhccccchhhHHHHHHHHH
Q 036324 46 SIEEQLCMFLHILAH-HVKS--RTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 46 ~veE~vamFL~i~~~-~~~~--r~i~~~F~~S~eTisr~f~~Vl 86 (91)
+..|..-..||.++. +.+. ..++..++.|++||++.+...-
T Consensus 6 ~~~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~Le 49 (226)
T 2qq9_A 6 ATTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVARME 49 (226)
T ss_dssp HHHHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456778888888753 4444 8999999999999999887643
No 235
>2jj7_A Hemolysin II regulatory protein; DNA-binding protein, transcription regulation, DNA-binding, family, transcription, transcriptional regulator; 2.10A {Bacillus cereus} PDB: 2wv1_A 2jk3_A 2fx0_A
Probab=62.18 E-value=6.7 Score=24.56 Aligned_cols=33 Identities=18% Similarity=0.004 Sum_probs=25.8
Q ss_pred HHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 51 LCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 51 vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
..+|.-.=-++.+.+.|+..=|.|+.|+++||.
T Consensus 17 ~~l~~~~G~~~~t~~~IA~~agvs~~tlY~~F~ 49 (186)
T 2jj7_A 17 KKKFGERGYEGTSIQEIAKEAKVNVAMASYYFN 49 (186)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHS
T ss_pred HHHHHHcCCccCCHHHHHHHhCCChhhhhhhcC
Confidence 344443333568999999999999999999995
No 236
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=62.13 E-value=8.4 Score=24.30 Aligned_cols=33 Identities=9% Similarity=0.059 Sum_probs=25.4
Q ss_pred HHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 51 LCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 51 vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
..+|.-.==++.+.++|+..=|.|+.|+++||.
T Consensus 13 ~~lf~~~G~~~~s~~~IA~~agvsk~t~Y~~F~ 45 (190)
T 3vpr_A 13 AKLFTEKGYEATSVQDLAQALGLSKAALYHHFG 45 (190)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHhCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 334433333568999999999999999999994
No 237
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=62.00 E-value=6.8 Score=24.58 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 47 IEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 47 veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++-.+.+|.-.=-++.+.+.|..+=|.|+.|+++||.
T Consensus 20 l~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~ 56 (191)
T 4aci_A 20 LEGARRCFAEHGYEGATVRRLEEATGKSRGAIFHHFG 56 (191)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHHHhCcccCCHHHHHHHHCCCchHHHHHCC
Confidence 3444445544444569999999999999999999995
No 238
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=61.81 E-value=6.1 Score=23.43 Aligned_cols=25 Identities=8% Similarity=0.192 Sum_probs=21.5
Q ss_pred CcchhhhhhccccchhhHHHHHHHH
Q 036324 61 HVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 61 ~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
..+..+++..|+.|.+||-|-+.+.
T Consensus 16 ~vsv~eLa~~l~VS~~TIRrdL~~L 40 (78)
T 1xn7_A 16 RMEAAQISQTLNTPQPMINAMLQQL 40 (78)
T ss_dssp SBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 4778889999999999999887664
No 239
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=61.81 E-value=13 Score=22.10 Aligned_cols=25 Identities=12% Similarity=0.155 Sum_probs=18.6
Q ss_pred CcchhhhhhccccchhhHHHHHHHH
Q 036324 61 HVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 61 ~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
+.+-..++..++.|..+++|.|++.
T Consensus 20 ~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 20 NFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp SCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455667778888888888888765
No 240
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=61.73 E-value=6 Score=25.13 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=26.5
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
...+|.-.=-++.+.+.|+..=|.|+.|+++||.
T Consensus 23 a~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~ 56 (212)
T 3knw_A 23 GFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFE 56 (212)
T ss_dssp HHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHcCCccCCHHHHHHHhCCChHHHHHHCC
Confidence 3344444433679999999999999999999995
No 241
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=61.28 E-value=15 Score=23.43 Aligned_cols=66 Identities=8% Similarity=0.036 Sum_probs=40.0
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHHH-HHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHH
Q 036324 15 CVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEEQ-LCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 15 c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE~-vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
++...+..+..-..+-..+.... ..++..+- +...|+. ..+.+..+++...+.|.+||++.+...-
T Consensus 18 ~~~l~~~~r~~~~~~~~~l~~~~-----~~lt~~~~~iL~~L~~-~~~~t~~eLa~~l~is~~tvs~~l~~Le 84 (168)
T 2nyx_A 18 TDALLTASRLLVAISAHSIAQVD-----ENITIPQFRTLVILSN-HGPINLATLATLLGVQPSATGRMVDRLV 84 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----SSCCHHHHHHHHHHHH-HCSEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHH-cCCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34444444444444444444311 13444443 3334443 3478999999999999999999987654
No 242
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=61.14 E-value=8.6 Score=22.04 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=20.0
Q ss_pred cchhhhhhccccchhhHHHHHH
Q 036324 62 VKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 62 ~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.++..+++..+.|++|||+..+
T Consensus 14 ~sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 14 KNQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp SCHHHHHHHSSSCHHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHHH
Confidence 3999999999999999999864
No 243
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=61.09 E-value=9 Score=23.90 Aligned_cols=33 Identities=12% Similarity=0.033 Sum_probs=25.8
Q ss_pred HHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 51 LCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 51 vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
..+|.-.=-++.+.++|+..=|.|+.|+++||.
T Consensus 12 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 44 (194)
T 3bqz_B 12 KELFIKNGYNATTTGEIVKLSESSKGNLYYHFK 44 (194)
T ss_dssp HHHHHHHTTTTCCHHHHHHHTTCCHHHHHHHTS
T ss_pred HHHHHHcCCccCCHHHHHHHhCCCchhHHHhCC
Confidence 334443333678999999999999999999995
No 244
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=60.85 E-value=9.9 Score=23.96 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=18.1
Q ss_pred chhhhhhccccchhhHHHHHHHH
Q 036324 63 KSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 63 ~~r~i~~~F~~S~eTisr~f~~V 85 (91)
+-|.++..|+.|+.||.+-+...
T Consensus 40 ser~La~~~gVSr~tVReAl~~L 62 (134)
T 4ham_A 40 SIREFASRIGVNPNTVSKAYQEL 62 (134)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHHHH
Confidence 45667889999999998777653
No 245
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=60.81 E-value=2.3 Score=23.65 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=19.1
Q ss_pred CcchhhhhhccccchhhHHHHH
Q 036324 61 HVKSRTIHSRFLRSRETISRYF 82 (91)
Q Consensus 61 ~~~~r~i~~~F~~S~eTisr~f 82 (91)
+.+...++...|.|..|||++.
T Consensus 10 ~~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 10 FGTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HSSHHHHHHHHTCCHHHHHHCC
T ss_pred cCCHHHHHHHhCCCHHHHHHHH
Confidence 3588999999999999999873
No 246
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, PR structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=60.68 E-value=8.8 Score=24.62 Aligned_cols=36 Identities=11% Similarity=0.231 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 48 EEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 48 eE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+-.+.+|.-.=-++.+.++|...=|.|..|+++||.
T Consensus 22 ~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~~F~ 57 (221)
T 3c2b_A 22 DQALRLLVEGGEKALTTSGLARAANCSKESLYKWFG 57 (221)
T ss_dssp HHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHS
T ss_pred HHHHHHHHhCCcccCCHHHHHHHhCCCHHHHHHhCC
Confidence 333444444333679999999999999999999995
No 247
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=60.68 E-value=10 Score=24.42 Aligned_cols=37 Identities=5% Similarity=0.056 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 47 IEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 47 veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++-....|.-.==++++.++|...=|.|+.|+++||.
T Consensus 17 l~aA~~lF~~~Gy~~ts~~~IA~~aGvsk~tlY~~F~ 53 (202)
T 2i10_A 17 LQTAMELFWRQGYEGTSITDLTKALGINPPSLYAAFG 53 (202)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccCCHHHHHHHhCCChHHHHHHhC
Confidence 4555666665555779999999999999999999994
No 248
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=60.67 E-value=7.2 Score=27.57 Aligned_cols=38 Identities=8% Similarity=0.120 Sum_probs=28.6
Q ss_pred HHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHH
Q 036324 51 LCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNA 88 (91)
Q Consensus 51 vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~a 88 (91)
..|.-+....+.+...++..++.|.+|||+++....++
T Consensus 15 ~~IL~~L~~g~~s~~ELa~~lglS~stVs~hL~~Le~a 52 (232)
T 2qlz_A 15 RDLLSHLTCMECYFSLLSSKVSVSSTAVAKHLKIMERE 52 (232)
T ss_dssp HHHHHHHTTTTTCSSSSCTTCCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 33443444456888899999999999999999876543
No 249
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=60.46 E-value=9.2 Score=24.63 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 48 EEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 48 eE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+-....|.-.==++.+.++|+..=|.|+.|+++||.
T Consensus 19 ~aA~~lf~~~G~~~ts~~~IA~~aGvsk~tlY~~F~ 54 (211)
T 3bhq_A 19 QAATAAFISKGYDGTSMEEIATKAGASKQTVYKHFT 54 (211)
T ss_dssp HHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 334445554444679999999999999999999994
No 250
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=60.16 E-value=10 Score=23.86 Aligned_cols=40 Identities=13% Similarity=0.127 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhcCcchhhhhhccc----cchhhHHHHHHHHH
Q 036324 47 IEEQLCMFLHILAHHVKSRTIHSRFL----RSRETISRYFNLVL 86 (91)
Q Consensus 47 veE~vamFL~i~~~~~~~r~i~~~F~----~S~eTisr~f~~Vl 86 (91)
.+..|-.+||....+.+..+|...++ .+..||++.....-
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe 53 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLA 53 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 45567777777545799999999998 69999999887653
No 251
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=60.09 E-value=10 Score=25.99 Aligned_cols=38 Identities=0% Similarity=0.028 Sum_probs=29.2
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
+++|.......+.+...++..++.|.+|||++.+..-+
T Consensus 17 rl~IL~~L~~~~~s~~eLa~~l~is~stvs~hLk~Le~ 54 (202)
T 2p4w_A 17 RRRILFLLTKRPYFVSELSRELGVGQKAVLEHLRILEE 54 (202)
T ss_dssp HHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34444443456789999999999999999999987554
No 252
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=60.00 E-value=5.5 Score=24.49 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=20.0
Q ss_pred chhhhhhccccchhhHHHHHHHH
Q 036324 63 KSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 63 ~~r~i~~~F~~S~eTisr~f~~V 85 (91)
+.+.++..|+.|+.||.+.+...
T Consensus 45 s~~eLa~~lgVSr~tVr~al~~L 67 (102)
T 2b0l_A 45 VASKIADRVGITRSVIVNALRKL 67 (102)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 67888999999999999888764
No 253
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=60.00 E-value=11 Score=23.65 Aligned_cols=28 Identities=7% Similarity=0.205 Sum_probs=24.2
Q ss_pred cCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
.+.+...++..++.|++||++.+...-+
T Consensus 63 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~ 90 (159)
T 3s2w_A 63 DGINQESLSDYLKIDKGTTARAIQKLVD 90 (159)
T ss_dssp CSEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4579999999999999999999887543
No 254
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=59.96 E-value=11 Score=24.19 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=26.1
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-.+..|.-.==+ .+.+.|+.+=|.|+.||++||.
T Consensus 20 aA~~lf~~~G~~-~s~~~IA~~agvs~~tiY~~F~ 53 (224)
T 1t33_A 20 AALAQFGEYGLH-ATTRDIAALAGQNIAAITYYFG 53 (224)
T ss_dssp HHHHHHHHHGGG-SCHHHHHHHHTSCHHHHHHHHS
T ss_pred HHHHHHHHhCcc-ccHHHHHHHhCCCHHHHHHhcC
Confidence 334444443335 9999999999999999999995
No 255
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=59.90 E-value=6.9 Score=24.49 Aligned_cols=36 Identities=22% Similarity=0.041 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 48 EEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 48 eE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+-...+|.-.=-++.+.++|..+=|.|+.|+++||.
T Consensus 15 ~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 50 (206)
T 3dew_A 15 EVATELFAQKGFYGVSIRELAQAAGASISMISYHFG 50 (206)
T ss_dssp HHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHSC
T ss_pred HHHHHHHhcCCcccCcHHHHHHHhCCCHHHHHHHcC
Confidence 334445544434579999999999999999999995
No 256
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=59.82 E-value=19 Score=21.09 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=20.7
Q ss_pred CcchhhhhhccccchhhHHHHHHHH
Q 036324 61 HVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 61 ~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
+.+..+++..++.|..+++|.|++.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 5677788888899999999988876
No 257
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=59.78 E-value=11 Score=26.57 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhcCcchhhhhhc----cc---cchhhHHHHHHHH
Q 036324 47 IEEQLCMFLHILAHHVKSRTIHSR----FL---RSRETISRYFNLV 85 (91)
Q Consensus 47 veE~vamFL~i~~~~~~~r~i~~~----F~---~S~eTisr~f~~V 85 (91)
-.+.=+++++....|.+.+.++.. || .|..||.++++..
T Consensus 8 ~~~~R~~i~~~~~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~ 53 (345)
T 3hot_A 8 KEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRF 53 (345)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 344445566666666666665555 66 9999999998864
No 258
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=59.77 E-value=15 Score=23.32 Aligned_cols=27 Identities=15% Similarity=0.022 Sum_probs=24.1
Q ss_pred CcchhhhhhccccchhhHHHHHHHHHH
Q 036324 61 HVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 61 ~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
..++..++..++.|.+||++.++...+
T Consensus 21 ~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (151)
T 2cyy_A 21 KAPLREISKITGLAESTIHERIRKLRE 47 (151)
T ss_dssp TCCHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 579999999999999999999987654
No 259
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=59.71 E-value=7.2 Score=24.52 Aligned_cols=33 Identities=15% Similarity=-0.022 Sum_probs=25.4
Q ss_pred HHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 51 LCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 51 vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+.+|.-.--++.+.+.|..+=|.|..|+++||.
T Consensus 18 ~~l~~~~G~~~~t~~~IA~~Agvs~~tly~~F~ 50 (194)
T 3dpj_A 18 DELFYRQGFAQTSFVDISAAVGISRGNFYYHFK 50 (194)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHcCcccCCHHHHHHHHCCChHHHHHHcC
Confidence 334433323578999999999999999999994
No 260
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=59.25 E-value=5.8 Score=25.14 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 47 IEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 47 veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++-.+..|.-.==++.+.++|+..=|.|..||++||.
T Consensus 24 l~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~ 60 (212)
T 3loc_A 24 LSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFP 60 (212)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHSS
T ss_pred HHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHhhhCC
Confidence 3444556665555779999999999999999999993
No 261
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=59.17 E-value=11 Score=23.75 Aligned_cols=35 Identities=9% Similarity=0.009 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-...+|.-.=-++.+.++|+..=|.|..|+++||.
T Consensus 24 aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 58 (213)
T 2qtq_A 24 TASNIMREGDVVDISLSELSLRSGLNSALVKYYFG 58 (213)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHHHS
T ss_pred HHHHHHHHcCcccccHHHHHHHhCCChhhHhHhcC
Confidence 33444444334579999999999999999999995
No 262
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=59.16 E-value=2.9 Score=25.98 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=20.4
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHH
Q 036324 11 SDIECVNQLRMDKRTFELLCGLL 33 (91)
Q Consensus 11 ~~~~c~~~fRM~~~~F~~L~~~L 33 (91)
++.++...|+|+++.|.+|=.+=
T Consensus 49 SdedF~~vFgMsr~eF~~LP~WK 71 (88)
T 1ujs_A 49 SQEEFYQVFGMTISEFDRLALWK 71 (88)
T ss_dssp CTTHHHHHHSSCHHHHTTSCHHH
T ss_pred CHHHHHHHHCcCHHHHHHChHHH
Confidence 67899999999999999987763
No 263
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=58.96 E-value=5.6 Score=22.20 Aligned_cols=27 Identities=7% Similarity=0.132 Sum_probs=22.0
Q ss_pred HhhcCcchhhhhhccccchhhHHHHHH
Q 036324 57 ILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 57 i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
....|.+..+++..-+.|.+||+++-+
T Consensus 11 r~~~glsq~~lA~~~gis~~~i~~~e~ 37 (77)
T 2k9q_A 11 RIRLSLTAKSVAEEMGISRQQLCNIEQ 37 (77)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 345678889999999999999998753
No 264
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=58.91 E-value=13 Score=23.48 Aligned_cols=28 Identities=7% Similarity=0.125 Sum_probs=24.3
Q ss_pred cCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
...++..++..++.|.+||++.++...+
T Consensus 18 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 45 (144)
T 2cfx_A 18 SRLSMRELGRKIKLSPPSVTERVRQLES 45 (144)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3479999999999999999999987644
No 265
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=58.91 E-value=8.3 Score=23.97 Aligned_cols=28 Identities=7% Similarity=0.048 Sum_probs=24.2
Q ss_pred cCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
...++..++..++.|..||++.+...-+
T Consensus 17 ~~~~~~ela~~lg~s~~tv~~~l~~L~~ 44 (141)
T 1i1g_A 17 ARTPFTEIAKKLGISETAVRKRVKALEE 44 (141)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3579999999999999999999887644
No 266
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=58.59 E-value=6.6 Score=22.77 Aligned_cols=37 Identities=14% Similarity=0.024 Sum_probs=28.2
Q ss_pred ccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 45 VSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 45 v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.++-+.+.-. .-..|.+..+++..-|.|..|||++.+
T Consensus 7 ~~~g~~l~~~--r~~~gltq~~lA~~~gis~~~is~~e~ 43 (94)
T 2ict_A 7 PRPGDIIQES--LDELNVSLREFARAMEIAPSTASRLLT 43 (94)
T ss_dssp CCHHHHHHHH--HHHHTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CChhHHHHHH--HHHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 3455555433 455678999999999999999999875
No 267
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=58.56 E-value=7.4 Score=22.44 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=22.1
Q ss_pred HhhcCcchhhhhhccccchhhHHHHH
Q 036324 57 ILAHHVKSRTIHSRFLRSRETISRYF 82 (91)
Q Consensus 57 i~~~~~~~r~i~~~F~~S~eTisr~f 82 (91)
....|.+..+++..-+.|.+|||++-
T Consensus 23 R~~~gltq~elA~~~gis~~~is~~E 48 (86)
T 3eus_A 23 RLDAGLTQADLAERLDKPQSFVAKVE 48 (86)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 35578899999999999999999874
No 268
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=58.41 E-value=30 Score=21.64 Aligned_cols=23 Identities=9% Similarity=0.094 Sum_probs=19.0
Q ss_pred chhhhhhccccchhhHHHHHHHH
Q 036324 63 KSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 63 ~~r~i~~~F~~S~eTisr~f~~V 85 (91)
+-+.++..|+.|+.||.+.+...
T Consensus 37 se~~La~~~~vSr~tvr~Al~~L 59 (126)
T 3by6_A 37 SVRETALQEKINPNTVAKAYKEL 59 (126)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 56777899999999998877654
No 269
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=58.38 E-value=8.9 Score=24.30 Aligned_cols=34 Identities=21% Similarity=0.165 Sum_probs=25.9
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
...+|.-.=-.+.+.++|...=|.|..|+++||.
T Consensus 27 a~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~ 60 (212)
T 1pb6_A 27 ALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFP 60 (212)
T ss_dssp HHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHSS
T ss_pred HHHHHHHcCcchhhHHHHHHHHCCChhHHHHhCC
Confidence 3344433322578999999999999999999994
No 270
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=58.32 E-value=5.3 Score=25.60 Aligned_cols=24 Identities=29% Similarity=0.247 Sum_probs=21.8
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++.+.+.|+..=|.|..||++||.
T Consensus 36 ~~~t~~~IA~~agvs~~t~Y~~F~ 59 (218)
T 3gzi_A 36 AQVSIREIASLAGTDPGLIRYYFG 59 (218)
T ss_dssp SCCCHHHHHHHHTSCTHHHHHHHS
T ss_pred CcCCHHHHHHHhCCCHHHHHHHcC
Confidence 458999999999999999999994
No 271
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=58.13 E-value=5.7 Score=25.17 Aligned_cols=37 Identities=5% Similarity=0.020 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 47 IEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 47 veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++-....|.-.=-++.+.++|...=|.|+.|+++||.
T Consensus 13 l~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~ 49 (178)
T 4hku_A 13 LNMAEKIIYEKGMEKTTLYDIASNLNVTHAALYKHYR 49 (178)
T ss_dssp HHHHHHHHHHHCGGGCCHHHHHHHTTSCGGGGGGTCS
T ss_pred HHHHHHHHHHhCcccccHHHHHHHhCcCHhHHHHHCC
Confidence 3444455554444678999999999999999999984
No 272
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=58.00 E-value=7.9 Score=24.63 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=26.5
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
....|.-.==++.+.++|+.+=|.|+.|+++||.
T Consensus 21 A~~lf~e~G~~~~t~~~IA~~agvsk~tlY~~F~ 54 (192)
T 2fq4_A 21 SYELLLESGFKAVTVDKIAERAKVSKATIYKWWP 54 (192)
T ss_dssp HHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHcCcccccHHHHHHHcCCCHHHHHHHCC
Confidence 3344443334678999999999999999999995
No 273
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=58.00 E-value=37 Score=22.38 Aligned_cols=76 Identities=14% Similarity=0.075 Sum_probs=55.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHh----hcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 14 ECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHIL----AHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 14 ~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~----~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
+.-+.+++.+.+-..=+.+++.-+.....++-+.+--.|.=||+. +.+-+.++|.+-++.+..+|.+.++.+++.+
T Consensus 18 ~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclylAcr~~~~p~~l~di~~~~~v~~~~i~~~~~~l~~~L 97 (200)
T 1ais_B 18 RITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPRTLDEIADIARVDKKEIGRSYRFIARNL 97 (200)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 445567777766655555555433334455667777777788875 4567899999999999999999999998865
No 274
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=57.64 E-value=9.9 Score=24.04 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=24.4
Q ss_pred cCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
...++..++..++.|.+||++.++...+
T Consensus 22 ~~~s~~ela~~lg~s~~tv~~~l~~L~~ 49 (151)
T 2dbb_A 22 SRLTYRELADILNTTRQRIARRIDKLKK 49 (151)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3589999999999999999999987654
No 275
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=57.58 E-value=7.5 Score=24.56 Aligned_cols=27 Identities=11% Similarity=0.044 Sum_probs=23.8
Q ss_pred CcchhhhhhccccchhhHHHHHHHHHH
Q 036324 61 HVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 61 ~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
..++..++..++.|.+||++.++...+
T Consensus 17 ~~~~~ela~~lg~s~~tv~~~l~~L~~ 43 (150)
T 2pn6_A 17 KYSLDEIAREIRIPKATLSYRIKKLEK 43 (150)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 479999999999999999999987654
No 276
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=57.38 E-value=9.4 Score=24.88 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=28.9
Q ss_pred HHHhhcC----cchhhhhhccc---cchhhHHHHHHHHHHHH
Q 036324 55 LHILAHH----VKSRTIHSRFL---RSRETISRYFNLVLNAI 89 (91)
Q Consensus 55 L~i~~~~----~~~r~i~~~F~---~S~eTisr~f~~Vl~ai 89 (91)
|..++.| .++.+|+.... .|..||..|...+.+.+
T Consensus 154 l~~l~~~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl 195 (220)
T 1p2f_A 154 LLFLAENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAI 195 (220)
T ss_dssp HHHHHHTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 3444555 99999999998 99999999999988765
No 277
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=57.11 E-value=11 Score=25.06 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=22.6
Q ss_pred HHHHHHHHhhcC--cchhhhhhcc-----ccchhhHHHHHHH
Q 036324 50 QLCMFLHILAHH--VKSRTIHSRF-----LRSRETISRYFNL 84 (91)
Q Consensus 50 ~vamFL~i~~~~--~~~r~i~~~F-----~~S~eTisr~f~~ 84 (91)
..+.++-++..+ .+...+.+.+ ..|..||||-+++
T Consensus 6 R~~~I~~li~~~~~~tq~eL~~~L~~~G~~VtqaTisRDL~e 47 (149)
T 1b4a_A 6 RHIKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKE 47 (149)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCccHHHHHHHHHHcCCCcCHHHHHHHHHH
Confidence 334444443333 4555666666 9999999998876
No 278
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=57.06 E-value=7.8 Score=24.89 Aligned_cols=34 Identities=9% Similarity=0.016 Sum_probs=26.4
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+.+|.-.=-++.+.++|+..=|.|..|+++||.
T Consensus 32 A~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~F~ 65 (214)
T 2zb9_A 32 VGELLLTEGTAQLTFERVARVSGVSKTTLYKWWP 65 (214)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCS
T ss_pred HHHHHHHhCcccCCHHHHHHHHCCCHHHHHHHCC
Confidence 3344443333579999999999999999999985
No 279
>2opt_A Actii protein; helical protein, TETR family, APO-protein, transcriptional R transcription; 2.05A {Streptomyces coelicolor} PDB: 3b6a_A* 3b6c_A*
Probab=57.02 E-value=10 Score=25.87 Aligned_cols=34 Identities=6% Similarity=0.014 Sum_probs=26.0
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+.+|--.=-.+.+.|.|..+-|.|..|+++||.
T Consensus 15 A~~l~~~~G~~~~S~r~IA~~aGvs~~tlY~hF~ 48 (234)
T 2opt_A 15 ALGILDAEGLDALSMRRLAQELKTGHASLYAHVG 48 (234)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HHHHHHhCCccccCHHHHHHHHCCChhHHHHHcC
Confidence 3334433323568999999999999999999994
No 280
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=57.01 E-value=23 Score=23.77 Aligned_cols=41 Identities=12% Similarity=0.023 Sum_probs=30.3
Q ss_pred ccHHH-HHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHH
Q 036324 45 VSIEE-QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 45 v~veE-~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
++..+ .+-.+|+.- .+.+...++..++.+..||++.+...-
T Consensus 46 Lt~~q~~iL~~L~~~-~~~t~~eLa~~l~i~~stvs~~l~~Le 87 (207)
T 2fxa_A 46 LNINEHHILWIAYQL-NGASISEIAKFGVMHVSTAFNFSKKLE 87 (207)
T ss_dssp CCHHHHHHHHHHHHH-TSEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHC-CCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 44443 344455543 479999999999999999999987654
No 281
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=56.97 E-value=10 Score=20.37 Aligned_cols=26 Identities=4% Similarity=0.042 Sum_probs=20.2
Q ss_pred hhcCcchhhhhhccc--cchhhHHHHHH
Q 036324 58 LAHHVKSRTIHSRFL--RSRETISRYFN 83 (91)
Q Consensus 58 ~~~~~~~r~i~~~F~--~S~eTisr~f~ 83 (91)
-.+|.+..+++...+ .|.+||+++-+
T Consensus 18 ~~~glsq~~lA~~~g~~is~~~i~~~e~ 45 (71)
T 2ewt_A 18 TQQGLSLHGVEEKSQGRWKAVVVGSYER 45 (71)
T ss_dssp HHTTCCHHHHHHHTTTSSCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCcCCHHHHHHHHC
Confidence 345677888888888 89999988754
No 282
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Probab=56.92 E-value=5.6 Score=24.79 Aligned_cols=34 Identities=21% Similarity=0.140 Sum_probs=25.7
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+.+|.-.=-.+.+.+.|...=|.|..|+++||.
T Consensus 23 a~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 56 (156)
T 3ljl_A 23 VVDQLLRLGYDKMSYTTLSQQTGVSRTGISHHFP 56 (156)
T ss_dssp HHHHHHHTHHHHCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHhChhhcCHHHHHHHHCCCHHHHHHHCC
Confidence 3444433333458999999999999999999994
No 283
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=56.84 E-value=7.6 Score=26.33 Aligned_cols=36 Identities=11% Similarity=0.095 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
+++-.|+ .++...+++.++...+.|++|||+.+.+.
T Consensus 9 ~~L~~f~-~v~~~gs~s~AA~~L~isq~avS~~i~~L 44 (303)
T 3isp_A 9 PQLAALA-AVVELGSFDAAAERLHVTPSAVSQRIKSL 44 (303)
T ss_dssp HHHHHHH-HHHHHTCHHHHHTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHcCCHHHHHHHhCCChHHHHHHHHHH
Confidence 4566666 45556799999999999999999999875
No 284
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=56.53 E-value=7.3 Score=23.03 Aligned_cols=27 Identities=11% Similarity=0.082 Sum_probs=22.7
Q ss_pred HHhhcCcchhhhhhccccchhhHHHHH
Q 036324 56 HILAHHVKSRTIHSRFLRSRETISRYF 82 (91)
Q Consensus 56 ~i~~~~~~~r~i~~~F~~S~eTisr~f 82 (91)
..-..|.+..+++...+.|..||+++-
T Consensus 38 ~R~~~glsq~elA~~lgvs~~~is~~E 64 (99)
T 2ppx_A 38 IRRALKLTQEEFSARYHIPLGTLRDWE 64 (99)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHhCcCHHHHHHHH
Confidence 345578899999999999999999874
No 285
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=56.47 E-value=11 Score=24.65 Aligned_cols=35 Identities=11% Similarity=-0.071 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-.+.+|.-.=-++.+.++|+..=|.|..|+++||.
T Consensus 48 aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~ 82 (225)
T 2id3_A 48 AAGDALAADGFDALDLGEIARRAGVGKTTVYRRWG 82 (225)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHHCC
Confidence 33444544333569999999999999999999995
No 286
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=56.47 E-value=14 Score=24.65 Aligned_cols=39 Identities=10% Similarity=0.215 Sum_probs=28.3
Q ss_pred HHHHHHHHhhcCcchhhhhhccc-cchhhHHHHHHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFL-RSRETISRYFNLVLNA 88 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~-~S~eTisr~f~~Vl~a 88 (91)
.+.|.-.......+...+...++ .|++|||+|++..-+|
T Consensus 25 Rl~il~~L~~~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~a 64 (182)
T 4g6q_A 25 RWRITQLLIGRSLTTRELAELLPDVATTTLYRQVGILVKA 64 (182)
T ss_dssp HHHHHHHTTTSCEEHHHHHHHCTTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHhcCCCHHHHHHHHHHHHHC
Confidence 34444333445678889999995 8999999999876554
No 287
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=56.47 E-value=7.7 Score=22.00 Aligned_cols=28 Identities=4% Similarity=-0.141 Sum_probs=23.1
Q ss_pred HHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 56 HILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 56 ~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+.-..|.+..+++..-+.|..||+++-+
T Consensus 18 ~R~~~gltq~elA~~~gis~~~is~~E~ 45 (78)
T 3qq6_A 18 YRKEKGYSLSELAEKAGVAKSYLSSIER 45 (78)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4556788889999999999999998754
No 288
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=56.46 E-value=5.7 Score=25.06 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=26.3
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
...+|.-.=-++.+.++|...=|.|..|+++||.
T Consensus 20 A~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~ 53 (203)
T 3b81_A 20 IWDIFIANGYENTTLAFIINKLGISKGALYHYFS 53 (203)
T ss_dssp HHHHHHHHCSTTCCHHHHHHHHTCCHHHHHTTCS
T ss_pred HHHHHHHcCcccCcHHHHHHHhCCCchhHHHHcC
Confidence 3444444333568999999999999999999984
No 289
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=56.45 E-value=5.6 Score=24.79 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 48 EEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 48 eE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+-.+.+|.-.=-++.+.++|+..=|.|+.|+++||.
T Consensus 17 ~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 52 (196)
T 3col_A 17 DAVAAIILAEGPAGVSTTKVAKRVGIAQSNVYLYFK 52 (196)
T ss_dssp HHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHTTCS
T ss_pred HHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHHHhC
Confidence 334444444434579999999999999999999985
No 290
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=56.44 E-value=8.6 Score=24.54 Aligned_cols=36 Identities=14% Similarity=0.124 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 48 EEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 48 eE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+-....|.-.==++.+.++|+..=|.|+.|+++||.
T Consensus 17 ~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY~yF~ 52 (194)
T 2nx4_A 17 AAAWRLIAARGIEAANMRDIATEAGYTNGALSHYFA 52 (194)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHhCc
Confidence 344455555444779999999999999999999994
No 291
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=56.44 E-value=8.4 Score=23.90 Aligned_cols=34 Identities=9% Similarity=-0.026 Sum_probs=26.1
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+.+|.-.=-.+.+.++|...=|.|+.|+++||.
T Consensus 17 a~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 50 (194)
T 2g7s_A 17 ARTLIIRGGYNSFSYADISQVVGIRNASIHHHFP 50 (194)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCS
T ss_pred HHHHHHHcCcccCCHHHHHHHhCCCchHHHHHcC
Confidence 3344443333568999999999999999999985
No 292
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=56.21 E-value=9.6 Score=24.05 Aligned_cols=35 Identities=9% Similarity=0.025 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-.+.+|.-.=-++.+.++|..+=|.|+.|+++||.
T Consensus 16 AA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~ 50 (195)
T 3frq_A 16 AATVVLKRCGPIEFTLSGVAKEVGLSRAALIQRFT 50 (195)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHHC
T ss_pred HHHHHHHhhCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 33444443333578999999999999999999995
No 293
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=56.15 E-value=9.9 Score=24.11 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=25.6
Q ss_pred HHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 51 LCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 51 vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+.+|.-.=-++.+.++|...=|.|+.|+++||.
T Consensus 27 ~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 59 (207)
T 2rae_A 27 IELFTEQGFDATSVDEVAEASGIARRTLFRYFP 59 (207)
T ss_dssp HHHHHHHCTTTSCHHHHHHHTTSCHHHHHHHCS
T ss_pred HHHHHHcCcccCCHHHHHHHhCCCcchHhhhCC
Confidence 334433333568999999999999999999985
No 294
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=56.07 E-value=7.9 Score=21.57 Aligned_cols=26 Identities=12% Similarity=0.005 Sum_probs=20.2
Q ss_pred hhcCcchhhhhhccccchhhHHHHHH
Q 036324 58 LAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 58 ~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-..|.+..+++...|.|..||+++-+
T Consensus 20 ~~~glsq~~lA~~~gis~~~i~~~e~ 45 (84)
T 2ef8_A 20 KEASLSQSELAIFLGLSQSDISKIES 45 (84)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHc
Confidence 44677888888888888888888754
No 295
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=56.01 E-value=6.7 Score=22.88 Aligned_cols=26 Identities=12% Similarity=0.052 Sum_probs=19.7
Q ss_pred hhcCcchhhhhhccccchhhHHHHHH
Q 036324 58 LAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 58 ~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-..|.+..+++...+.|..||+++.+
T Consensus 19 ~~~glsq~~lA~~~gis~~~is~~e~ 44 (94)
T 2kpj_A 19 AKSEKTQLEIAKSIGVSPQTFNTWCK 44 (94)
T ss_dssp TTSSSCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHh
Confidence 34566778888888888888888753
No 296
>2dg7_A Putative transcriptional regulator; helix-turn-helix motif, TETR family, gene regulation; 2.30A {Streptomyces coelicolor}
Probab=55.99 E-value=7.5 Score=24.58 Aligned_cols=24 Identities=29% Similarity=0.366 Sum_probs=22.0
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+.+.++|...=|.|+.|+++||.
T Consensus 26 ~~~t~~~Ia~~agvs~~t~Y~~F~ 49 (195)
T 2dg7_A 26 DNVTVTDIAERAGLTRRSYFRYFP 49 (195)
T ss_dssp GGCCHHHHHHHTTCCHHHHHHHCS
T ss_pred cccCHHHHHHHhCCCHHHHHHHcC
Confidence 458999999999999999999995
No 297
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=55.93 E-value=16 Score=23.06 Aligned_cols=27 Identities=7% Similarity=-0.021 Sum_probs=24.0
Q ss_pred CcchhhhhhccccchhhHHHHHHHHHH
Q 036324 61 HVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 61 ~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
..++..++..++.|.+||++.++...+
T Consensus 21 ~~s~~ela~~lg~s~~tv~~~l~~L~~ 47 (150)
T 2w25_A 21 RATLSELATRAGLSVSAVQSRVRRLES 47 (150)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 579999999999999999999987654
No 298
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=55.91 E-value=8.8 Score=24.47 Aligned_cols=37 Identities=19% Similarity=0.173 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 47 IEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 47 veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++-.+.+|.-.=-++.+.+.|...=|.|..|+++||.
T Consensus 17 l~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 53 (216)
T 3f0c_A 17 INAAQKRFAHYGLCKTTMNEIASDVGMGKASLYYYFP 53 (216)
T ss_dssp HHHHHHHHHHHCSSSCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHhCCCHHHHHHHcC
Confidence 4444555544333578999999999999999999994
No 299
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=55.88 E-value=7.1 Score=24.50 Aligned_cols=24 Identities=21% Similarity=0.090 Sum_probs=21.9
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++.+.++|...=|.|+.|+++||.
T Consensus 36 ~~~s~~~Ia~~agvs~~t~Y~~F~ 59 (206)
T 3kz9_A 36 GRGGHADIAEIAQVSVATVFNYFP 59 (206)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHCC
T ss_pred ccccHHHHHHHhCCCHHHHHHHcC
Confidence 458999999999999999999994
No 300
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=55.86 E-value=7.4 Score=24.11 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.5
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++.+.++|...=|.|+.|+++||.
T Consensus 27 ~~~ti~~Ia~~agvs~~t~Y~~F~ 50 (188)
T 3qkx_A 27 NQLSMLKLAKEANVAAGTIYLYFK 50 (188)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHSS
T ss_pred ccCCHHHHHHHhCCCcchHHHHcC
Confidence 458889999999999999999985
No 301
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=55.84 E-value=9.1 Score=24.11 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=22.1
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++.+.+.|+..=|.|+.|+++||.
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F~ 54 (202)
T 3lwj_A 31 YNTSIRDIIALSEVGTGTFYNYFV 54 (202)
T ss_dssp TTCCHHHHHHHHCSCHHHHHHHCS
T ss_pred ccCCHHHHHHHhCCCchhHHHHcC
Confidence 568999999999999999999995
No 302
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=55.77 E-value=7.3 Score=25.81 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=28.2
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
++-.|+ .++...+++.++..-+.|++|||+.+.+.
T Consensus 5 ~l~~f~-~v~~~~s~t~AA~~L~isq~avS~~i~~L 39 (291)
T 3szp_A 5 DLNLFR-LVVENGSYTSTSKKTMIPVATITRRIQAL 39 (291)
T ss_dssp HHHHHH-HHHHHSSHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHH-HHHhcCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 444444 56667899999999999999999999875
No 303
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=55.74 E-value=6 Score=24.80 Aligned_cols=34 Identities=15% Similarity=-0.009 Sum_probs=25.6
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
...+|.-.=-++.+.++|+..=|.|+.|+++||.
T Consensus 16 a~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~ 49 (199)
T 3qbm_A 16 AAALFNVSGYAGTAISDIMAATGLEKGGIYRHFE 49 (199)
T ss_dssp HHHHHHHHCSTTCCHHHHHHHHTCCHHHHHTTCS
T ss_pred HHHHHHHhCcCcCCHHHHHHHhCCCccHHHHhCC
Confidence 3344433333568999999999999999999984
No 304
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=55.73 E-value=8 Score=21.68 Aligned_cols=27 Identities=15% Similarity=0.027 Sum_probs=21.8
Q ss_pred HhhcCcchhhhhhccccchhhHHHHHH
Q 036324 57 ILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 57 i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.-..|.+..+++..-+.|.+||+++-+
T Consensus 20 R~~~glsq~~lA~~~gis~~~i~~~e~ 46 (82)
T 3s8q_A 20 RLEKGMTQEDLAYKSNLDRTYISGIER 46 (82)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 445778888899999999999988753
No 305
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=55.69 E-value=16 Score=23.47 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=23.7
Q ss_pred CcchhhhhhccccchhhHHHHHHHHHH
Q 036324 61 HVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 61 ~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
..++..++..++.|.+||++.+...-+
T Consensus 24 ~~s~~ela~~lg~s~~tv~~~l~~L~~ 50 (162)
T 2p5v_A 24 RLTNVELSERVALSPSPCLRRLKQLED 50 (162)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 479999999999999999999987644
No 306
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=55.67 E-value=7.1 Score=24.28 Aligned_cols=34 Identities=12% Similarity=-0.045 Sum_probs=26.2
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
...+|.-.=-.+.+.++|...=|.|+.|+++||.
T Consensus 17 a~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 50 (195)
T 3pas_A 17 TVREVADHGFSATSVGKIAKAAGLSPATLYIYYE 50 (195)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHcChHhcCHHHHHHHhCCCchHHHHHcC
Confidence 3344443333568999999999999999999995
No 307
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=55.66 E-value=14 Score=22.35 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhcCcchhhhhhcccc----chhhHHHHHHHHH
Q 036324 47 IEEQLCMFLHILAHHVKSRTIHSRFLR----SRETISRYFNLVL 86 (91)
Q Consensus 47 veE~vamFL~i~~~~~~~r~i~~~F~~----S~eTisr~f~~Vl 86 (91)
.|-.|-.+||.-+ +.+.++|+..++. +..||++.....-
T Consensus 11 ~q~~vL~~L~~~~-~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe 53 (126)
T 1sd4_A 11 AEWDVMNIIWDKK-SVSANEIVVEIQKYKEVSDKTIRTLITRLY 53 (126)
T ss_dssp HHHHHHHHHHHSS-SEEHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Confidence 4557788888854 7899999999974 8999999887643
No 308
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=55.63 E-value=8.5 Score=24.67 Aligned_cols=35 Identities=14% Similarity=0.121 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-...+|.-.=-++.+.+.|...=|.|+.|+++||.
T Consensus 11 aA~~lf~~~G~~~~s~~~IA~~Agvs~~t~Y~~F~ 45 (212)
T 3rh2_A 11 ASLELFNEHGERTITTNHIAAHLDISPGNLYYHFR 45 (212)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHCC
Confidence 33444444334568999999999999999999994
No 309
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=55.57 E-value=10 Score=24.23 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 47 IEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 47 veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++-.+..|.-.==++.+.++|...=|.|+.|+++||.
T Consensus 13 l~aA~~lf~~~G~~~ts~~~IA~~aGvs~gtlY~~F~ 49 (197)
T 2gen_A 13 LQAALACFSEHGVDATTIEMIRDRSGASIGSLYHHFG 49 (197)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHHHCCCHHHHHHHTC
T ss_pred HHHHHHHHHHcCcccCCHHHHHHHHCCChHHHHHHCC
Confidence 3444555655444679999999999999999999994
No 310
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=55.49 E-value=11 Score=23.97 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 48 EEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 48 eE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+-.+.+|.-.=-++.+.++|...=|.|..|+++||.
T Consensus 17 ~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 52 (216)
T 3s5r_A 17 DAATTLFAEQGIAATTMAEIAASVGVNPAMIHYYFK 52 (216)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHTTTCCHHHHHHHCS
T ss_pred HHHHHHHHHcCcccCCHHHHHHHHCCCHHHHHHHcC
Confidence 334444433333568999999999999999999984
No 311
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=55.41 E-value=9.1 Score=24.54 Aligned_cols=36 Identities=14% Similarity=0.041 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 48 EEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 48 eE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+-....|.-.==++.+.++|+..=|.|..|+++||.
T Consensus 17 ~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t~Y~~F~ 52 (210)
T 3vib_A 17 LAALETFYRKGIARTSLNEIAQAAGVTRDALYWHFK 52 (210)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHHHCC
Confidence 334445554444679999999999999999999984
No 312
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=55.37 E-value=9.8 Score=24.33 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=26.5
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
....|.-.==++.+.++|+..=|.|+.|+++||.
T Consensus 23 A~~lf~~~G~~~~s~~~IA~~agvs~~tlY~~F~ 56 (204)
T 2ibd_A 23 AATLFAERGLRATTVRDIADAAGILSGSLYHHFD 56 (204)
T ss_dssp HHHHHHHHCSTTCCHHHHHHHTTSCHHHHHHHCS
T ss_pred HHHHHHHcCchhcCHHHHHHHhCCCchhHHHhcC
Confidence 3444544333678999999999999999999984
No 313
>3bjb_A Probable transcriptional regulator, TETR family P; APC7331, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.50A {Rhodococcus SP}
Probab=55.32 E-value=6.9 Score=25.42 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-...+|.-.=-++.+.++|..+=|.|+.|+++||.
T Consensus 30 AA~~lf~e~G~~~~s~~~IA~~AGVsk~tlY~~F~ 64 (207)
T 3bjb_A 30 AAIELATEKELARVQMHEVAKRAGVAIGTLYRYFP 64 (207)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHCC
Confidence 33444443333568999999999999999999994
No 314
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=55.28 E-value=7.4 Score=25.13 Aligned_cols=36 Identities=11% Similarity=0.038 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 48 EEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 48 eE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+-....|.-.==++.+.++|+..=|.|+.||++||.
T Consensus 18 ~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~ 53 (210)
T 2wui_A 18 DAAERVFLEKGVGTTAMADLADAAGVSRGAVYGHYK 53 (210)
T ss_dssp HHHHHHHHHSCTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHcCccccCHHHHHHHhCCCHHHHHHHcC
Confidence 334455554444679999999999999999999995
No 315
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=55.26 E-value=7.7 Score=25.43 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 47 IEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 47 veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++-...+|.-.=-++.+.++|+..=|.|..||++||.
T Consensus 36 l~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~ 72 (226)
T 2pz9_A 36 VAAAKEEFARHGIAGARVDRIAKQARTSKERVYAYFR 72 (226)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHTTSCHHHHHHHCS
T ss_pred HHHHHHHHHHhCcccCcHHHHHHHHCCChHHHHHHcC
Confidence 3444455544444579999999999999999999994
No 316
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=55.21 E-value=9.1 Score=24.19 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=25.6
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+.+|.-.=-++.+.++|...=|.|..|+++||.
T Consensus 23 a~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 56 (220)
T 3lhq_A 23 ALRLFSQQGVSATSLAEIANAAGVTRGAIYWHFK 56 (220)
T ss_dssp HHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHcCcccCCHHHHHHHhCCCceeehhhcC
Confidence 3344443323568999999999999999999994
No 317
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=55.07 E-value=25 Score=21.20 Aligned_cols=28 Identities=0% Similarity=-0.001 Sum_probs=24.5
Q ss_pred cCcchhhhhhcc-ccchhhHHHHHHHHHH
Q 036324 60 HHVKSRTIHSRF-LRSRETISRYFNLVLN 87 (91)
Q Consensus 60 ~~~~~r~i~~~F-~~S~eTisr~f~~Vl~ 87 (91)
.+.++..++... +.|..||++.....-+
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~ 62 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEK 62 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 568999999999 9999999999887543
No 318
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=54.94 E-value=14 Score=25.54 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHhhc--CcchhhhhhccccchhhHHHHHHHHH
Q 036324 46 SIEEQLCMFLHILAH--HVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 46 ~veE~vamFL~i~~~--~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
+++..+.+.-+.-.+ +.+..+|+...+.+++|++|+.+...
T Consensus 4 sl~r~l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~ 46 (241)
T 2xrn_A 4 VIARAASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALE 46 (241)
T ss_dssp HHHHHHHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 345555554444333 47899999999999999999987643
No 319
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=54.94 E-value=4.2 Score=25.24 Aligned_cols=24 Identities=25% Similarity=0.200 Sum_probs=21.5
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+.+.++|..+=|.|+.|+++||.
T Consensus 23 ~~~t~~~Ia~~agvs~~t~Y~~F~ 46 (170)
T 3egq_A 23 HEVSIEEIAREAKVSKSLIFYHFE 46 (170)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHCS
T ss_pred ccCcHHHHHHHhCCCchhHHHHcC
Confidence 357899999999999999999994
No 320
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=54.92 E-value=13 Score=23.64 Aligned_cols=33 Identities=9% Similarity=0.024 Sum_probs=25.8
Q ss_pred HHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 51 LCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 51 vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
...|.-.==++.+.++|...=|.|+.|+++||.
T Consensus 22 ~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~ 54 (197)
T 2hyt_A 22 RKVFSERGYADTSMDDLTAQASLTRGALYHHFG 54 (197)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTCCTTHHHHHHS
T ss_pred HHHHHHhCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 334433333678999999999999999999994
No 321
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=54.85 E-value=8.3 Score=24.04 Aligned_cols=34 Identities=9% Similarity=-0.131 Sum_probs=26.3
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+.+|.-.=-++.+.+.|...=|.|..|+++||.
T Consensus 16 A~~l~~~~G~~~~s~~~IA~~agvs~~tly~~F~ 49 (180)
T 2fd5_A 16 ATQALLERGAVEPSVGEVMGAAGLTVGGFYAHFQ 49 (180)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHTTCCGGGGGGTCS
T ss_pred HHHHHHHhCcccCCHHHHHHHhCCCccHHHHHCC
Confidence 3444444334578999999999999999999984
No 322
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=54.41 E-value=9.4 Score=23.93 Aligned_cols=35 Identities=9% Similarity=0.055 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 48 EEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 48 eE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+-.+.+|.-.=-+ .+.+.|..+=|.|..||++||.
T Consensus 16 ~aA~~lf~~~G~~-~t~~~IA~~aGvs~~tly~~F~ 50 (190)
T 3jsj_A 16 EAAAALTYRDGVG-IGVEALCKAAGVSKRSMYQLFE 50 (190)
T ss_dssp HHHHHHHHHHCTT-CCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHHhCcc-ccHHHHHHHhCCCHHHHHHHcC
Confidence 3344445443335 8999999999999999999994
No 323
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=54.28 E-value=8.5 Score=22.32 Aligned_cols=27 Identities=11% Similarity=-0.022 Sum_probs=22.5
Q ss_pred HhhcCcchhhhhhccccchhhHHHHHH
Q 036324 57 ILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 57 i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.-..|.+..+++...+.|.+||+++-+
T Consensus 13 r~~~gltq~~lA~~~gis~~~is~~e~ 39 (99)
T 2l49_A 13 RKSEYLSRQQLADLTGVPYGTLSYYES 39 (99)
T ss_dssp HHHTTCCHHHHHHHHCCCHHHHHHHTT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345678899999999999999998754
No 324
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=54.20 E-value=8.4 Score=23.91 Aligned_cols=24 Identities=21% Similarity=0.139 Sum_probs=21.8
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+.+.++|...=|.|+.|+++||.
T Consensus 28 ~~~tv~~Ia~~agvs~~t~Y~~F~ 51 (195)
T 3ppb_A 28 HGTSTATIAREAGVATGTLFHHFP 51 (195)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHHCS
T ss_pred ccCCHHHHHHHhCCChhHHHHHcC
Confidence 468999999999999999999985
No 325
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=54.19 E-value=5.9 Score=22.72 Aligned_cols=21 Identities=5% Similarity=-0.024 Sum_probs=19.8
Q ss_pred chhhhhhccccchhhHHHHHH
Q 036324 63 KSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 63 ~~r~i~~~F~~S~eTisr~f~ 83 (91)
++..+++..+.|+++||+.++
T Consensus 15 s~t~aA~~L~vtQ~AVS~~ir 35 (66)
T 2ovg_A 15 GQTKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999875
No 326
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=54.14 E-value=10 Score=24.53 Aligned_cols=39 Identities=8% Similarity=-0.027 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHH
Q 036324 46 SIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 46 ~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
.+.+++.- .+.-|...+.+.++..||.|+.||.+.+...
T Consensus 13 ~l~~~Il~-~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L 51 (163)
T 2gqq_A 13 RIDRNILN-ELQKDGRISNVELSKRVGLSPTPCLERVRRL 51 (163)
T ss_dssp SHHHHHHH-HHHHCSSCCTTGGGTSSSCCTTTSSSTHHHH
T ss_pred HHHHHHHH-HHHhCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34555555 5666777899999999999999998877664
No 327
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=54.08 E-value=21 Score=23.74 Aligned_cols=27 Identities=15% Similarity=0.022 Sum_probs=23.3
Q ss_pred hcCcchhhhhhccccchhhHHHHHHHH
Q 036324 59 AHHVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 59 ~~~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
|...+.+.++..|+.|..||+++.+..
T Consensus 22 g~~~s~~eia~~lgl~~~tv~~~l~~L 48 (196)
T 3k2z_A 22 GYPPSVREIARRFRITPRGALLHLIAL 48 (196)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCcHHHHHHHHHH
Confidence 445899999999999999999988754
No 328
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=53.93 E-value=11 Score=23.87 Aligned_cols=27 Identities=19% Similarity=0.105 Sum_probs=24.0
Q ss_pred CcchhhhhhccccchhhHHHHHHHHHH
Q 036324 61 HVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 61 ~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
..++..++..++.|.+||++.++...+
T Consensus 22 ~~s~~ela~~lg~s~~tv~~~l~~L~~ 48 (152)
T 2cg4_A 22 RTAYAELAKQFGVSPETIHVRVEKMKQ 48 (152)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 479999999999999999999987654
No 329
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=53.90 E-value=9.6 Score=23.90 Aligned_cols=34 Identities=12% Similarity=0.028 Sum_probs=26.6
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+.+|.-.=-++.+.++|+..=|.|..|+++||.
T Consensus 26 a~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~ 59 (208)
T 3cwr_A 26 AQRLLSSGGAAAMTMEGVASEAGIAKKTLYRFAS 59 (208)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHcCHHhccHHHHHHHhCCCHHHHHHHcC
Confidence 3444444434679999999999999999999995
No 330
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=53.77 E-value=7.7 Score=21.76 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=21.7
Q ss_pred HhhcCcchhhhhhccccchhhHHHHHH
Q 036324 57 ILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 57 i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.-..|.+..+++...|.|..||+++-+
T Consensus 23 R~~~gltq~elA~~~gis~~~is~~e~ 49 (83)
T 3f6w_A 23 RSAAGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 345678888999999999999998753
No 331
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, struct genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=53.58 E-value=9.6 Score=24.53 Aligned_cols=37 Identities=11% Similarity=0.001 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 47 IEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 47 veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++-...+|--.=-++.+.+.|+..=|.|..|+++||.
T Consensus 18 l~aA~~l~~e~G~~~~s~~~IA~~agvs~~t~Y~hF~ 54 (198)
T 3cjd_A 18 IDLAEAQIEAEGLASLRARELARQADCAVGAIYTHFQ 54 (198)
T ss_dssp HHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHhCChhhcCHHHHHHHhCCCccHHHHHhC
Confidence 3444445554444678999999999999999999995
No 332
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=53.54 E-value=6.9 Score=23.21 Aligned_cols=38 Identities=13% Similarity=0.096 Sum_probs=28.5
Q ss_pred CccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 44 TVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 44 ~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
..++-+.+.- +.-..|.+..+++...|.|..|||++.+
T Consensus 16 ~~~~g~~l~~--~r~~~gltq~~lA~~~gis~~~is~~e~ 53 (104)
T 3cec_A 16 PIHPGEVIAD--ILDDLDINTANFAEILGVSNQTIQEVIN 53 (104)
T ss_dssp CCCHHHHHHH--HHHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHH--HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3455565533 3455688999999999999999999864
No 333
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=53.51 E-value=25 Score=23.88 Aligned_cols=42 Identities=19% Similarity=0.273 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 25 TFELLCGLLRINGGLKADGTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 25 ~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+...|.+.+.. +.+++...++.|.. ++..||.|+.||-.-+.
T Consensus 9 v~~~L~~~I~~-g~l~pG~~LpsE~~----------------La~~lgVSRtpVREAL~ 50 (239)
T 2di3_A 9 VMDWVTEELRS-GRLKIGDHLPSERA----------------LSETLGVSRSSLREALR 50 (239)
T ss_dssp HHHHHHHHHHH-TSSCTTCBCCCHHH----------------HHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCCCCcCCCHHH----------------HHHHHCCCHHHHHHHHH
Confidence 44455555544 66777777776655 46789999999965554
No 334
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=53.30 E-value=8 Score=24.33 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=22.2
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+.+.+.|...=|.|+.|+++||.
T Consensus 39 ~~~t~~~Ia~~agvs~~t~Y~~F~ 62 (203)
T 3mnl_A 39 EAVQMRAVADRADVAVGTLYRYFP 62 (203)
T ss_dssp HHCCHHHHHHHHTCCHHHHHHHCS
T ss_pred ccCCHHHHHHHcCCChhHHHHHcC
Confidence 468999999999999999999995
No 335
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=53.25 E-value=11 Score=23.82 Aligned_cols=33 Identities=15% Similarity=0.061 Sum_probs=25.7
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
...+|.-. |-+.+.++|...=|.|+.|+++||.
T Consensus 25 A~~lf~~~-G~~~s~~~Ia~~agvs~~t~Y~~F~ 57 (199)
T 2rek_A 25 AAAEVARH-GADASLEEIARRAGVGSATLHRHFP 57 (199)
T ss_dssp HHHHHHHH-GGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHhc-CCCCCHHHHHHHhCCchHHHHHHCC
Confidence 34444433 3378999999999999999999994
No 336
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=53.21 E-value=7.7 Score=24.97 Aligned_cols=36 Identities=8% Similarity=0.164 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 48 EEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 48 eE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+-....|.-.==++.+.++|+..=|.|+.||++||.
T Consensus 21 ~aA~~lf~~~G~~~~s~~~IA~~agvsk~tlY~yF~ 56 (199)
T 3crj_A 21 QATYRALREHGYADLTIQRIADEYGKSTAAVHYYYD 56 (199)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHHHHTSCHHHHHTTCS
T ss_pred HHHHHHHHHcCcccCCHHHHHHHhCCChhHHhhhcC
Confidence 333444544444779999999999999999999994
No 337
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=53.20 E-value=8.8 Score=23.39 Aligned_cols=25 Identities=8% Similarity=0.294 Sum_probs=21.3
Q ss_pred CcchhhhhhccccchhhHHHHHHHH
Q 036324 61 HVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 61 ~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
..+..+++..|+.|.+||-|-+.+.
T Consensus 16 ~vsv~eLA~~l~VS~~TIRrDL~~L 40 (87)
T 2k02_A 16 RMEAKQLSARLQTPQPLIDAMLERM 40 (87)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 4778899999999999998887653
No 338
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=53.14 E-value=12 Score=23.42 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=22.0
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+.+.++|...=|.|..|+++||.
T Consensus 33 ~~~ti~~Ia~~agvs~~t~Y~~F~ 56 (203)
T 3f1b_A 33 HETSMDAIAAKAEISKPMLYLYYG 56 (203)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHCC
T ss_pred ccccHHHHHHHhCCchHHHHHHhC
Confidence 478999999999999999999984
No 339
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=52.91 E-value=5.2 Score=25.21 Aligned_cols=37 Identities=14% Similarity=0.022 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 47 IEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 47 veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++....+|.-.=-++.+.++|+..=|.|..|+++||.
T Consensus 17 l~aA~~lf~~~G~~~~ti~~IA~~agvs~~t~Y~~F~ 53 (204)
T 3eup_A 17 IESTAPVFNVKGLAGTSLTDLTEATNLTKGSIYGNFE 53 (204)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHTTTSS
T ss_pred HHHHHHHHHHcCcccCCHHHHHHHhCCCcHHHHHhCC
Confidence 3444555554444678999999999999999999984
No 340
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=52.90 E-value=15 Score=26.59 Aligned_cols=25 Identities=12% Similarity=0.123 Sum_probs=22.1
Q ss_pred cchhhhhhccccchhhHHHHHHHHH
Q 036324 62 VKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 62 ~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
.+...+++.|+.|..||.|.+...-
T Consensus 20 ~s~~eLa~~l~vS~~ti~r~l~~L~ 44 (321)
T 1bia_A 20 HSGEQLGETLGMSRAAINKHIQTLR 44 (321)
T ss_dssp BCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6788899999999999999998654
No 341
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=52.87 E-value=3.1 Score=25.86 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=20.6
Q ss_pred CcchhhhhhccccchhhHHHHHH
Q 036324 61 HVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 61 ~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+.+.++|+..=|.|+.|+++||.
T Consensus 32 ~~tv~~Ia~~agvs~~t~Y~~F~ 54 (177)
T 3kkc_A 32 KITVQDVIGLANVGRSTFYSHYE 54 (177)
T ss_dssp TCCHHHHHHHHCCCHHHHTTTCS
T ss_pred HhhHHHHHHHhCCcHhhHHHHcC
Confidence 57888999999999999999984
No 342
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=52.80 E-value=10 Score=24.36 Aligned_cols=34 Identities=18% Similarity=0.001 Sum_probs=26.3
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
....|.-.==++.+.++|+..=|.|+.|+++||.
T Consensus 20 A~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~ 53 (210)
T 2xdn_A 20 AERAFYKRGVARTTLADIAELAGVTRGAIYWHFN 53 (210)
T ss_dssp HHHHHHHHCSTTCCHHHHHHHHTCCTTHHHHHCS
T ss_pred HHHHHHHcCcccCcHHHHHHHHCCChHHHHHHhC
Confidence 3444443333679999999999999999999994
No 343
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas syringae PV. tomato STR. DC3000, structural genomics, PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Probab=52.57 E-value=8.4 Score=24.71 Aligned_cols=36 Identities=17% Similarity=0.078 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 48 EEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 48 eE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+-.+.+|.-.==++.+.++|+..=|.|+.||++||.
T Consensus 16 ~aA~~lf~~~G~~~~s~~~IA~~aGvsk~tlY~~F~ 51 (203)
T 3cdl_A 16 QAAIAEFGDRGFEITSMDRIAARAEVSKRTVYNHFP 51 (203)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHTTSS
T ss_pred HHHHHHHHHcCchhcCHHHHHHHhCCCHHHHHHHCC
Confidence 334455554434679999999999999999999984
No 344
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=52.56 E-value=7 Score=25.02 Aligned_cols=34 Identities=18% Similarity=0.180 Sum_probs=26.3
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
...+|.-.=-++.+.++|...=|.|..|+++||.
T Consensus 20 A~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~~F~ 53 (212)
T 2ras_A 20 AQAIVEERGGAGLTLSELAARAGISQANLSRYFE 53 (212)
T ss_dssp HHHHHHHHTSSCCCHHHHHHHHTSCHHHHTTTCS
T ss_pred HHHHHHHhCcccCcHHHHHHHhCCCHHHHHHHcC
Confidence 3444443333679999999999999999999994
No 345
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=52.47 E-value=11 Score=23.60 Aligned_cols=33 Identities=15% Similarity=0.034 Sum_probs=25.8
Q ss_pred HHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 51 LCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 51 vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
...|.-.==++.|.++|+..=|.|+.|+++||.
T Consensus 12 ~~lf~~~Gy~~~s~~~Ia~~agvskgtlY~~F~ 44 (179)
T 2eh3_A 12 KELFFEKGYQGTSVEEIVKRANLSKGAFYFHFK 44 (179)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHcCCccCCHHHHHHHhCCCcHHHHHHcC
Confidence 334443334578999999999999999999984
No 346
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=52.35 E-value=10 Score=23.97 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-.+.+|.-.=-++.+.++|...=|.|..|+++||.
T Consensus 34 aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 68 (217)
T 3mvp_A 34 VAKDLFSDKTYFNVTTNEIAKKADVSVGTLYAYFA 68 (217)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHcCccccCHHHHHHHhCCChhHHHHHcC
Confidence 33444444333579999999999999999999995
No 347
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=52.18 E-value=12 Score=24.94 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 47 IEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 47 veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++-.+.+|.-.=-++.+.+.|+..=|.|..||++||.
T Consensus 24 l~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~F~ 60 (251)
T 3npi_A 24 LDIALSLFSELGFSDAKLEAIAKKSGMSKRMIHYHFG 60 (251)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHC
T ss_pred HHHHHHHHHHcCccccCHHHHHHHHCCCHHHHHHHcC
Confidence 4444555554444679999999999999999999994
No 348
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, strept coelicolor, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=52.17 E-value=10 Score=25.18 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=22.1
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+.+.+.|..+-|.|..|+++||.
T Consensus 21 ~~~s~~~IA~~aGvs~~tlY~hf~ 44 (209)
T 3bqy_A 21 DTLTMRRLAQAMDVQAGALYRYFA 44 (209)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHCS
T ss_pred ccCCHHHHHHHhCCCcchHHhhcC
Confidence 468999999999999999999985
No 349
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=52.11 E-value=11 Score=23.95 Aligned_cols=33 Identities=18% Similarity=0.096 Sum_probs=25.4
Q ss_pred HHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 51 LCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 51 vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+.+|.-.=-++.+.+.|+.+=|.|+.|+++||.
T Consensus 19 ~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~ 51 (193)
T 2dg8_A 19 LDLIAEEGIARVSHRRIAQRAGVPLGSMTYHFT 51 (193)
T ss_dssp HHHHHHHCGGGCCHHHHHHHHTSCTHHHHHHCS
T ss_pred HHHHHHhChhhccHHHHHHHhCCCchhhheeCC
Confidence 333333333578999999999999999999985
No 350
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=51.90 E-value=13 Score=22.26 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=18.5
Q ss_pred CcchhhhhhccccchhhHHHHHHHH
Q 036324 61 HVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 61 ~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
+.+-..++..++.|..+++|.|++.
T Consensus 23 ~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 23 PLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3455667777888888888888765
No 351
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=51.66 E-value=8.8 Score=26.22 Aligned_cols=28 Identities=18% Similarity=0.070 Sum_probs=25.1
Q ss_pred HHHHhhcCcchhhhhhccccchhhHHHH
Q 036324 54 FLHILAHHVKSRTIHSRFLRSRETISRY 81 (91)
Q Consensus 54 FL~i~~~~~~~r~i~~~F~~S~eTisr~ 81 (91)
=-+.-.+|.++.+++...|.|+.||++|
T Consensus 96 k~lR~~~glTQ~elA~~LGvsr~tis~y 123 (170)
T 2auw_A 96 GDWMHRNNLSLTTAAEALGISRRMVSYY 123 (170)
T ss_dssp HHHHHHTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHhCCCHHHHHHH
Confidence 3467889999999999999999999987
No 352
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=51.64 E-value=12 Score=25.27 Aligned_cols=26 Identities=15% Similarity=0.042 Sum_probs=22.9
Q ss_pred hcCcchhhhhhccccchhhHHHHHHH
Q 036324 59 AHHVKSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 59 ~~~~~~r~i~~~F~~S~eTisr~f~~ 84 (91)
..|.+.+.|+..++.|.+||+|+..+
T Consensus 173 ~~G~s~~~Ia~~l~is~~tv~r~l~~ 198 (209)
T 2r0q_C 173 EEGQAISKIAKEVNITRQTVYRIKHD 198 (209)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHhc
Confidence 36799999999999999999998753
No 353
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=51.59 E-value=8.3 Score=23.93 Aligned_cols=34 Identities=9% Similarity=-0.054 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCcchhhhhhccccchhhHHHHHHH
Q 036324 51 LCMFLHILAHHVKSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 51 vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~ 84 (91)
+.+|.-.=-++.+.+.|+..=|.|+.|+++||..
T Consensus 16 ~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~ 49 (191)
T 1sgm_A 16 SRLSQLQGYHATGLNQIVKESGAPKGSLYHFFPN 49 (191)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHCCCSCHHHHSTTT
T ss_pred HHHHHHcCccccCHHHHHHHHCCCchhHHHHccc
Confidence 3344433335689999999999999999999974
No 354
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=51.52 E-value=13 Score=24.27 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=29.0
Q ss_pred HHHhhcC----cchhhhhhccc-----cchhhHHHHHHHHHHHH
Q 036324 55 LHILAHH----VKSRTIHSRFL-----RSRETISRYFNLVLNAI 89 (91)
Q Consensus 55 L~i~~~~----~~~r~i~~~F~-----~S~eTisr~f~~Vl~ai 89 (91)
|..++.| .++.+|..... .|..||..|...+.+.+
T Consensus 152 L~~l~~~~~~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr~KL 195 (223)
T 2hqr_A 152 LTHLARHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKM 195 (223)
T ss_dssp HHHHHHTCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCCHHHHHHHhcCCccCCCCcCHHHHHHHHHHHH
Confidence 4445556 99999999988 99999999999888765
No 355
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=51.42 E-value=12 Score=23.96 Aligned_cols=36 Identities=11% Similarity=0.081 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 48 EEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 48 eE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+-....|.-.==++.+.++|...=|.|+.|+++||.
T Consensus 17 ~aA~~lf~~~G~~~~s~~~Ia~~Agvskgt~Y~yF~ 52 (197)
T 2f07_A 17 QAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFS 52 (197)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHhCcccCCHHHHHHHhCCCchHHHHhCC
Confidence 334444544444678999999999999999999985
No 356
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=51.35 E-value=11 Score=24.70 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=25.2
Q ss_pred HHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 52 CMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 52 amFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+|.-.=-.+.+.++|+..=|.|+.|+++||.
T Consensus 54 ~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~~F~ 85 (229)
T 3bni_A 54 DLLDEVGYDALSTRAVALRADVPIGSVYRFFG 85 (229)
T ss_dssp HHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHhcChhhccHHHHHHHHCCCchhHHHHcC
Confidence 34443333569999999999999999999994
No 357
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=51.19 E-value=21 Score=24.77 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHHhh---cCcchhhhhhccccchhhHHHHHHHHH
Q 036324 46 SIEEQLCMFLHILA---HHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 46 ~veE~vamFL~i~~---~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
+++..+.|. ..++ .+.+..+|+...+.+++|++|+.+...
T Consensus 12 s~~r~l~iL-~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~ 54 (257)
T 2g7u_A 12 SIERGFAVL-LAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQ 54 (257)
T ss_dssp HHHHHHHHH-HTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455555554 4443 357999999999999999999988654
No 358
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=51.15 E-value=9.3 Score=23.48 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=18.0
Q ss_pred chhhhhhccccchhhHHHHHHHH
Q 036324 63 KSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 63 ~~r~i~~~F~~S~eTisr~f~~V 85 (91)
+-+.++..|+.|+.||.+.+...
T Consensus 35 s~~~La~~~~vSr~tvr~al~~L 57 (113)
T 3tqn_A 35 SIRKISTEYQINPLTVSKAYQSL 57 (113)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 45566789999999998877654
No 359
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=51.06 E-value=11 Score=24.32 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 48 EEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 48 eE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+-....|.-.==++.+.++|+..=|.|+.|+++||.
T Consensus 15 ~aA~~lf~~~Gy~~~s~~~IA~~AGvs~gt~Y~yF~ 50 (206)
T 1vi0_A 15 DAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFK 50 (206)
T ss_dssp HHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHhCcccCCHHHHHHHhCCChhHHHHHcC
Confidence 334455544434578999999999999999999984
No 360
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=51.04 E-value=8.8 Score=25.33 Aligned_cols=33 Identities=21% Similarity=0.195 Sum_probs=25.8
Q ss_pred HHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 51 LCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 51 vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
..+|--.=-++.+.+.|...=|.|..|+++||.
T Consensus 26 ~~l~~~~G~~~~s~~~IA~~agvs~~t~Y~~F~ 58 (216)
T 2oi8_A 26 WEQIATAGASALSLNAIAKRMGMSGPALYRYFD 58 (216)
T ss_dssp HHHHHHHCTTSCCHHHHHHHTTCCHHHHHTTCS
T ss_pred HHHHHhcCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 334433333669999999999999999999985
No 361
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=50.82 E-value=9.7 Score=24.31 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.6
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+.+.++|+..=|.|+.|+++||.
T Consensus 31 ~~~ti~~Ia~~agvs~~t~Y~~F~ 54 (189)
T 3vp5_A 31 HEAKIMHIVKALDIPRGSFYQYFE 54 (189)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred ccccHHHHHHHhCCChHHHHHHCC
Confidence 467899999999999999999994
No 362
>2xpw_A Tetracycline repressor protein class D; transcription, transcription regulator, helix-turn-helix, ME coordination; HET: OTC MES; 1.44A {Escherichia coli} PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2x6o_A* 2x9d_A* 2xps_A* 2xpt_A* 2vke_A* 2xpu_A* 2xpv_A* 2tct_A* 2xb5_A* 2trt_A* 2xrl_A* 1qpi_A* 1a6i_A ...
Probab=50.63 E-value=9 Score=25.39 Aligned_cols=34 Identities=9% Similarity=0.063 Sum_probs=26.1
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+.+|--.=-.+.+.|.|+.+-|.|..|+++||.
T Consensus 12 A~~l~~~~G~~~~s~~~IA~~~Gvs~~slY~hF~ 45 (207)
T 2xpw_A 12 ALELLNETGIDGLTTRKLAQKLGIEQPTLYWHVK 45 (207)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHCC
T ss_pred HHHHHHhcCcccCCHHHHHHHhCCCcchHHHhcC
Confidence 3444433333468999999999999999999985
No 363
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=50.62 E-value=9.6 Score=24.18 Aligned_cols=24 Identities=8% Similarity=0.019 Sum_probs=21.6
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++.+.++|..+=|.|+.|+++||.
T Consensus 23 ~~~t~~~Ia~~agvs~~t~Y~~F~ 46 (185)
T 2yve_A 23 ETLSYDSLAEATGLSKSGLIYHFP 46 (185)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHCS
T ss_pred hhccHHHHHHHhCCChHHHHHhCc
Confidence 458899999999999999999985
No 364
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=50.55 E-value=26 Score=20.91 Aligned_cols=27 Identities=0% Similarity=0.062 Sum_probs=23.6
Q ss_pred cCcchhhhhhcc-ccchhhHHHHHHHHH
Q 036324 60 HHVKSRTIHSRF-LRSRETISRYFNLVL 86 (91)
Q Consensus 60 ~~~~~r~i~~~F-~~S~eTisr~f~~Vl 86 (91)
.+.++.+++... +.|..|+|+.....-
T Consensus 26 ~~~~~~eLa~~l~~is~~tls~~L~~Le 53 (107)
T 2hzt_A 26 GKKRTSELKRLMPNITQKMLTQQLRELE 53 (107)
T ss_dssp CCBCHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 458999999999 999999999987654
No 365
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=50.50 E-value=17 Score=24.73 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhc---CcchhhhhhccccchhhHHHHHHHHH
Q 036324 47 IEEQLCMFLHILAH---HVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 47 veE~vamFL~i~~~---~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
.+|.-.-.+|.+.. ..+..+++..++.|++||++.+...-
T Consensus 3 ~~edYL~~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le 45 (214)
T 3hrs_A 3 NKEDYLKCLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLL 45 (214)
T ss_dssp CHHHHHHHHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHH
Confidence 34555555666543 47899999999999999999987653
No 366
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=50.35 E-value=12 Score=24.09 Aligned_cols=35 Identities=11% Similarity=-0.010 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-...+|.-.==++.+.++|..+=|.|+.||++||.
T Consensus 17 AA~~lf~~~G~~~~s~~~IA~~AGvs~gtlY~~F~ 51 (203)
T 2np5_A 17 ALFDVAAESGLEGASVREVAKRAGVSIGAVQHHFS 51 (203)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHhChhhccHHHHHHHhCCCHHHHHHHcC
Confidence 33444444334669999999999999999999994
No 367
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=50.25 E-value=10 Score=24.30 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=22.1
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++.+.++|+..=|.|..|+++||.
T Consensus 49 ~~~t~~~IA~~aGvs~~t~Y~~F~ 72 (222)
T 3bru_A 49 SSVGVDEILKAARVPKGSFYHYFR 72 (222)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred CcCcHHHHHHHhCCCcchhhhhCC
Confidence 568999999999999999999994
No 368
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=50.16 E-value=34 Score=24.05 Aligned_cols=67 Identities=12% Similarity=0.063 Sum_probs=40.8
Q ss_pred hHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHH-HHHHHHHHhhc-CcchhhhhhccccchhhHHHHHHHHH
Q 036324 13 IECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEE-QLCMFLHILAH-HVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 13 ~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE-~vamFL~i~~~-~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
..|....++....... .+.+...++| +..| .|-.+|+.-+. +.+..+++...+.+.+||++.+...-
T Consensus 131 ~~~~~l~~~~~~~~~~-~~~~~~~~gL------t~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe 199 (250)
T 1p4x_A 131 KDSKEFLNLMMYTMYF-KNIIKKHLTL------SFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLK 199 (250)
T ss_dssp CSHHHHHHHHHHHHHH-HHHHHHHCSS------CHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhhCCC------CHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 3465555544333333 3333333444 3333 34455554442 47999999999999999999987653
No 369
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=50.16 E-value=13 Score=23.74 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=25.4
Q ss_pred HHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 51 LCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 51 vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
...|.-.=-++.+.++|...=|.|+.|+++||.
T Consensus 19 ~~lf~~~G~~~~t~~~Ia~~Agvs~gt~Y~yF~ 51 (204)
T 3anp_C 19 MELFRNRGFQETTATEIAKAAHVSRGTFFNYYP 51 (204)
T ss_dssp HHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHcCcccccHHHHHHHcCCchHHHHHHcC
Confidence 334433333568999999999999999999994
No 370
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=50.08 E-value=11 Score=22.24 Aligned_cols=27 Identities=4% Similarity=-0.119 Sum_probs=22.3
Q ss_pred HhhcCcchhhhhhccccchhhHHHHHH
Q 036324 57 ILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 57 i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.-..|.+...++...|.|.+||+++.+
T Consensus 10 r~~~gltq~~lA~~~gis~~~i~~~e~ 36 (111)
T 1b0n_A 10 RKEKGYSLSELAEKAGVAKSYLSSIER 36 (111)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 345678889999999999999998764
No 371
>2o5h_A Hypothetical protein; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 1.90A {Neisseria meningitidis} SCOP: d.363.1.1
Probab=50.07 E-value=12 Score=24.96 Aligned_cols=39 Identities=23% Similarity=0.199 Sum_probs=27.8
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCC---CC--CccHHHHHHHHHHH
Q 036324 19 LRMDKRTFELLCGLLRINGGLKA---DG--TVSIEEQLCMFLHI 57 (91)
Q Consensus 19 fRM~~~~F~~L~~~L~~~~~l~~---s~--~v~veE~vamFL~i 57 (91)
|==.|..|+.|...|-..+.++= .. .-|++|||.||=-.
T Consensus 48 FeErK~~FF~ll~kLL~eG~iKLa~~G~fl~Gs~~EqVe~fR~~ 91 (136)
T 2o5h_A 48 FEEKTEAFFILFKELLRRGHLKLQRDGQIIGHTPEEWEQIFREV 91 (136)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEETTEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcEEecCCCeeccCCHHHHHHHHHHH
Confidence 33357889999999888776643 21 45899999998543
No 372
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=50.05 E-value=8.3 Score=23.12 Aligned_cols=27 Identities=15% Similarity=0.208 Sum_probs=22.7
Q ss_pred HhhcCcchhhhhhccccchhhHHHHHH
Q 036324 57 ILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 57 i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.-..|.+..+++...|.|.+|||++-+
T Consensus 20 r~~~glsq~~lA~~~gis~~~is~~e~ 46 (113)
T 2eby_A 20 LEPLDLKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp TTTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 455678999999999999999998754
No 373
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=49.96 E-value=17 Score=24.53 Aligned_cols=28 Identities=7% Similarity=0.087 Sum_probs=24.4
Q ss_pred cCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
...+...++..++.|.+||++++...-+
T Consensus 32 ~~~s~~eLA~~lglS~stv~~~l~~Le~ 59 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKLKE 59 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4689999999999999999999887543
No 374
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=49.96 E-value=30 Score=21.61 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhcCcchhhhhhcc--ccchhhHHHHHHHHHH
Q 036324 47 IEEQLCMFLHILAHHVKSRTIHSRF--LRSRETISRYFNLVLN 87 (91)
Q Consensus 47 veE~vamFL~i~~~~~~~r~i~~~F--~~S~eTisr~f~~Vl~ 87 (91)
...++--.|-.= ...+...++..+ +.|..+|++++...-+
T Consensus 14 ~d~~IL~~L~~~-g~~s~~eLA~~l~~giS~~aVs~rL~~Le~ 55 (111)
T 3b73_A 14 WDDRILEIIHEE-GNGSPKELEDRDEIRISKSSVSRRLKKLAD 55 (111)
T ss_dssp HHHHHHHHHHHH-SCBCHHHHHTSTTCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 345554444332 378999999999 9999999999987544
No 375
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=49.91 E-value=13 Score=24.04 Aligned_cols=35 Identities=17% Similarity=0.215 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-...+|.-.==++.+.++|...=|.|+.||++||.
T Consensus 17 aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY~yF~ 51 (209)
T 2gfn_A 17 AVLALIAREGISAVTTRAVAEESGWSTGVLNHYFG 51 (209)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHHHSSCHHHHHHHTS
T ss_pred HHHHHHHHhCcccCCHHHHHHHHCCCcchHHhcCC
Confidence 33444444434679999999999999999999994
No 376
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=49.83 E-value=13 Score=24.51 Aligned_cols=35 Identities=14% Similarity=0.025 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-....|.-.==++.+.++|...=|.|..||++||.
T Consensus 15 AA~~lF~e~G~~~ts~~~IA~~AGvs~~tlY~hF~ 49 (235)
T 2fbq_A 15 AAEQLFAEKGFAETSLRLITSKAGVNLAAVNYHFG 49 (235)
T ss_dssp HHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHTC
T ss_pred HHHHHHHHcCccccCHHHHHHHhCCCHHHHHHHcC
Confidence 33445543333679999999999999999999994
No 377
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=49.65 E-value=14 Score=24.27 Aligned_cols=30 Identities=13% Similarity=0.162 Sum_probs=24.6
Q ss_pred HHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 53 MFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 53 mFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
||-+. ..|.+.+.|+..++.|.+||+|+..
T Consensus 151 i~~~~-~~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 151 VLNMW-QQGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp HHHHH-HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHH-HCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 45433 4678999999999999999999864
No 378
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=49.42 E-value=9.5 Score=25.28 Aligned_cols=34 Identities=9% Similarity=0.012 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 48 EEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 48 eE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+-.+.+| ..-| +.|.+.|+.+-|.|..|+++||.
T Consensus 18 ~aA~~l~-~~~G-~~s~~~IA~~aGvs~~tlY~hF~ 51 (213)
T 2g7g_A 18 EAALELV-DRDG-DFRMPDLARHLNVQVSSIYHHAK 51 (213)
T ss_dssp HHHHHHH-HHHS-SCCHHHHHHHTTSCHHHHHTTSC
T ss_pred HHHHHHH-HHcC-CCCHHHHHHHhCCCHhHHHHHcC
Confidence 3344444 3456 99999999999999999999995
No 379
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=49.27 E-value=8.5 Score=21.52 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=18.1
Q ss_pred cchhhhhhccccchhhHHHHHH
Q 036324 62 VKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 62 ~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+..+++..++.|..||.+...
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~ 24 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQE 24 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHH
Confidence 3567889999999999998753
No 380
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=49.08 E-value=22 Score=21.92 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=19.3
Q ss_pred CcchhhhhhccccchhhHHHHHHHH
Q 036324 61 HVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 61 ~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
+.+-.+++..++.|..+++|.|++.
T Consensus 27 ~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 27 PLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp CCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4566677888888888888888875
No 381
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=49.01 E-value=13 Score=27.54 Aligned_cols=74 Identities=5% Similarity=-0.015 Sum_probs=46.6
Q ss_pred HHhhcCChhHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHH-HHHHHHHHh-hcCcchhhhhhccccchhhHHHHH
Q 036324 5 SRSIIGSDIECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEE-QLCMFLHIL-AHHVKSRTIHSRFLRSRETISRYF 82 (91)
Q Consensus 5 ~~ll~~~~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE-~vamFL~i~-~~~~~~r~i~~~F~~S~eTisr~f 82 (91)
.+++...-..|....+..+.. .++.+.+...+ ++|..| .|...||.- +.+.+...++.+.+.+..||+|.+
T Consensus 369 ~~~l~~~~~~~~~l~~~~~~~-~~~~~~~~~~~------~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~ 441 (487)
T 1hsj_A 369 AAEFMSKINDINDLVNATFQV-KKFFRDTKKKF------NLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKAL 441 (487)
T ss_dssp TCCCCCCCCSHHHHHHHHHHH-HHHHHHHSSSC------CCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc------CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHH
Confidence 344555666777777644333 33343333323 356655 344455442 135899999999999999999998
Q ss_pred HHH
Q 036324 83 NLV 85 (91)
Q Consensus 83 ~~V 85 (91)
...
T Consensus 442 ~~l 444 (487)
T 1hsj_A 442 QKL 444 (487)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 382
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=48.95 E-value=3.6 Score=28.58 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
++-.|+-+.-++.+++.++.+.+.|++|||+.+.+.
T Consensus 5 ~L~~F~~v~~~gls~s~AA~~L~isq~avS~~I~~L 40 (324)
T 1al3_A 5 QLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRML 40 (324)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHcccCHHHHHHHhCCCchHHHHHHHHH
Confidence 455555555544499999999999999999998764
No 383
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=48.59 E-value=8.5 Score=25.61 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 48 EEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 48 eE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+-.+.+|.-.=-.+.+.+.|+.+-|.|..|+++||.
T Consensus 32 ~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~~F~ 67 (211)
T 3fiw_A 32 TEALDLLDEVGLDGVSTRRLAKRLGVEQPSLYWYFR 67 (211)
T ss_dssp HHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHTTCS
T ss_pred HHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcC
Confidence 334444443333458999999999999999999984
No 384
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=48.57 E-value=8 Score=24.11 Aligned_cols=34 Identities=3% Similarity=-0.135 Sum_probs=26.0
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
...+|.-.=-++.+.++|+..=|.|+.|+++||.
T Consensus 17 a~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 50 (183)
T 1zk8_A 17 AAEIADANGVQEVTLASLAQTLGVRSPSLYNHVK 50 (183)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCS
T ss_pred HHHHHHhcCccccCHHHHHHHcCCCchHHHHHcC
Confidence 3344443333568999999999999999999984
No 385
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=48.48 E-value=12 Score=23.71 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.8
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+.+.+.|...=|.|+.|+++||.
T Consensus 50 ~~~tv~~Ia~~agvs~~t~Y~~F~ 73 (218)
T 3dcf_A 50 YATSLDDIADRIGFTKPAIYYYFK 73 (218)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred ccCcHHHHHHHhCCCHHHHHHHcC
Confidence 458999999999999999999985
No 386
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=48.47 E-value=9.3 Score=24.69 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 47 IEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 47 veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++-...+|.-.=-++.+.++|...=|.|+.|+++||.
T Consensus 17 l~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~ 53 (219)
T 2w53_A 17 LDAAEACFHEHGVARTTLEMIGARAGYTRGAVYWHFK 53 (219)
T ss_dssp HHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHTTCS
T ss_pred HHHHHHHHHHhCcccCCHHHHHHHhCCCchHHhhcCC
Confidence 4445556654444679999999999999999999984
No 387
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=48.47 E-value=33 Score=23.01 Aligned_cols=44 Identities=9% Similarity=0.056 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHH
Q 036324 24 RTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 24 ~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~ 84 (91)
.+...|.+.+.. +.+++...++.|.. ++..||.|+.||-.-+..
T Consensus 11 ~v~~~l~~~I~~-g~l~pG~~LPsE~e----------------La~~~gVSR~tVReAL~~ 54 (239)
T 1hw1_A 11 FAEEYIIESIWN-NRFPPGTILPAERE----------------LSELIGVTRTTLREVLQR 54 (239)
T ss_dssp HHHHHHHHHHHT-TSSCTTSBCCCHHH----------------HHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCCCCCCCCCHHH----------------HHHHHCCCHHHHHHHHHH
Confidence 344455555544 66777777776665 467999999999666554
No 388
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=48.46 E-value=14 Score=23.63 Aligned_cols=28 Identities=11% Similarity=0.000 Sum_probs=24.6
Q ss_pred HHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 56 HILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 56 ~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
..-..|.+.++++...|.|.+|||++-+
T Consensus 76 ~R~~~glTq~elA~~lGis~s~is~~E~ 103 (141)
T 3kxa_A 76 LRMKKGFTQSELATAAGLPQPYLSRIEN 103 (141)
T ss_dssp HHHHTTCCHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4467889999999999999999999865
No 389
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=48.43 E-value=15 Score=23.83 Aligned_cols=35 Identities=9% Similarity=0.169 Sum_probs=28.3
Q ss_pred HHHhhcC----cchhhhhhccc-----cchhhHHHHHHHHHHHH
Q 036324 55 LHILAHH----VKSRTIHSRFL-----RSRETISRYFNLVLNAI 89 (91)
Q Consensus 55 L~i~~~~----~~~r~i~~~F~-----~S~eTisr~f~~Vl~ai 89 (91)
|..++.| .++.+|+.... .|..||..|...+.+.+
T Consensus 160 L~~l~~~~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~~Kl 203 (225)
T 1kgs_A 160 LEYLVMNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKV 203 (225)
T ss_dssp HHHHHHTTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcccCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHh
Confidence 3445555 89999999887 89999999999887765
No 390
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=48.43 E-value=14 Score=24.11 Aligned_cols=34 Identities=9% Similarity=-0.034 Sum_probs=26.0
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+.+|.-.=-++.+.++|...=|.|+.|+++||.
T Consensus 37 A~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~F~ 70 (217)
T 3hta_A 37 AIRVVGQKGIAGLSHRTVAAEADVPLGSTTYHFA 70 (217)
T ss_dssp HHHHHHHHTGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHcCcccCCHHHHHHHcCCCcchhhhcCC
Confidence 3344433333578999999999999999999984
No 391
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=48.37 E-value=22 Score=21.15 Aligned_cols=39 Identities=13% Similarity=0.265 Sum_probs=32.8
Q ss_pred cHHHHHHHHHHHhhcCcchhhhhhccccchh-hHHHHHHHH
Q 036324 46 SIEEQLCMFLHILAHHVKSRTIHSRFLRSRE-TISRYFNLV 85 (91)
Q Consensus 46 ~veE~vamFL~i~~~~~~~r~i~~~F~~S~e-Tisr~f~~V 85 (91)
+..+++..+|..-| +.+-.+|+...+.+.. +|.+++...
T Consensus 11 ~~~~~IL~~Lk~~g-~~ta~eiA~~Lgit~~~aVr~hL~~L 50 (79)
T 1xmk_A 11 EIKEKICDYLFNVS-DSSALNLAKNIGLTKARDINAVLIDM 50 (79)
T ss_dssp HHHHHHHHHHHHTC-CEEHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcC-CcCHHHHHHHcCCCcHHHHHHHHHHH
Confidence 56788888888877 6789999999999999 999887654
No 392
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=48.25 E-value=15 Score=23.18 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=25.8
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-...+|.- -|-..+.++|...=|.|+.|+++||.
T Consensus 23 aA~~lf~~-~G~~~s~~~IA~~agvs~~tlY~~F~ 56 (194)
T 2q24_A 23 AAVRVFSE-EGLDAHLERIAREAGVGSGTLYRNFP 56 (194)
T ss_dssp HHHHHHHH-HCTTCCHHHHHHHTTCCHHHHHHHCC
T ss_pred HHHHHHHh-cCcCCCHHHHHHHhCCChHHHHHHcC
Confidence 33444433 34348999999999999999999984
No 393
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=48.18 E-value=12 Score=22.97 Aligned_cols=37 Identities=14% Similarity=0.099 Sum_probs=29.9
Q ss_pred ccHHHHHHHHH--HHhhcCcchhhhhhccccchhhHHHH
Q 036324 45 VSIEEQLCMFL--HILAHHVKSRTIHSRFLRSRETISRY 81 (91)
Q Consensus 45 v~veE~vamFL--~i~~~~~~~r~i~~~F~~S~eTisr~ 81 (91)
-.+.|+++--| +....|.++.+++.+-|.|..||+++
T Consensus 31 ~~l~~~lG~~ir~~R~~~glTQ~eLA~~~gvs~~~is~~ 69 (101)
T 4ghj_A 31 AALAEEIGDRLKQARLNRDLTQSEVAEIAGIARKTVLNA 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHH
Confidence 34556666555 56688999999999999999999986
No 394
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=48.17 E-value=6.8 Score=24.96 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-...+|.-.=-++.+.++|+..=|.|..|+++||.
T Consensus 21 aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~ 55 (217)
T 3nrg_A 21 VLLDEFAQNDYDSVSINRITERAGIAKGSFYQYFA 55 (217)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTCCTTGGGGTCS
T ss_pred HHHHHHHhcCcccCCHHHHHHHhCCcHHHHHHHcC
Confidence 33444444333468999999999999999999984
No 395
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=48.16 E-value=15 Score=24.04 Aligned_cols=28 Identities=11% Similarity=0.160 Sum_probs=25.1
Q ss_pred cchhhhhhcc-----ccchhhHHHHHHHHHHHH
Q 036324 62 VKSRTIHSRF-----LRSRETISRYFNLVLNAI 89 (91)
Q Consensus 62 ~~~r~i~~~F-----~~S~eTisr~f~~Vl~ai 89 (91)
.++.+|.... ..|..||..|...+.+.+
T Consensus 176 ~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~Kl 208 (230)
T 2oqr_A 176 LTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKI 208 (230)
T ss_dssp EEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHH
T ss_pred EcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHH
Confidence 8999999987 889999999999988765
No 396
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=48.09 E-value=10 Score=24.94 Aligned_cols=35 Identities=14% Similarity=0.039 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-.+.+|.-.=-++.+.++|+..=|.|..||++||.
T Consensus 52 aA~~lf~e~G~~~~t~~~IA~~aGvs~~tlY~~F~ 86 (236)
T 3q0w_A 52 TAENLLEDRPLADISVDDLAKGAGISRPTFYFYFP 86 (236)
T ss_dssp HHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHHcCcccCCHHHHHHHhCCcHHHHHHHCC
Confidence 33444443333478999999999999999999984
No 397
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=47.95 E-value=11 Score=23.96 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=21.7
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++.+.++|...=|.|+.|+++||.
T Consensus 27 ~~~t~~~IA~~agvs~~tlY~~F~ 50 (199)
T 2o7t_A 27 DSLTMENIAEQAGVGVATLYRNFP 50 (199)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcC
Confidence 457999999999999999999985
No 398
>2iu5_A DHAS, YCEG, HTH-type dhaklm operon transcriptional activator; synthase, TETR family; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=47.90 E-value=4.3 Score=25.89 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.5
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++.+.++|...=|.|+.|+++||.
T Consensus 32 ~~~tv~~Ia~~agvs~~t~Y~~F~ 55 (195)
T 2iu5_A 32 HQISVSDIMQTAKIRRQTFYNYFQ 55 (195)
T ss_dssp GGCCHHHHHHHHTSCGGGGGGTCS
T ss_pred CeeCHHHHHHHhCCCHHHHHHHcC
Confidence 458899999999999999999984
No 399
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=47.89 E-value=13 Score=23.25 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=18.8
Q ss_pred chhhhhhccccchhhHHHHHHHH
Q 036324 63 KSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 63 ~~r~i~~~F~~S~eTisr~f~~V 85 (91)
+-+.++..|+.|+.||.+.+...
T Consensus 39 s~~~La~~~~vSr~tvr~Al~~L 61 (125)
T 3neu_A 39 SVREMGVKLAVNPNTVSRAYQEL 61 (125)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 46677889999999998887654
No 400
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=47.88 E-value=10 Score=25.28 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=22.2
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++.+.++|...=|.|..|+++||.
T Consensus 65 ~~~t~~~IA~~aGvs~~t~Y~~F~ 88 (245)
T 3aqt_A 65 DNVGIAEITEGANIGTGTFYNYFP 88 (245)
T ss_dssp GGCCHHHHHHHTTSCGGGGGGTCS
T ss_pred ccCcHHHHHHHhCCChHHHHHHcC
Confidence 578999999999999999999994
No 401
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=47.68 E-value=6.4 Score=24.82 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=25.1
Q ss_pred HHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 51 LCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 51 vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
..+|.-.=-.+.+.++|..+=|.|+.|+++||.
T Consensus 26 ~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 58 (211)
T 3him_A 26 IEVFAAKGYGATTTREIAASLDMSPGAVYPHYK 58 (211)
T ss_dssp HHHHHHHCSTTCCHHHHHHHTTCCTTSSTTTCS
T ss_pred HHHHHHcCCCcCCHHHHHHHhCCCcChhhhcCC
Confidence 334433333568999999999999999999984
No 402
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=47.65 E-value=27 Score=23.87 Aligned_cols=41 Identities=10% Similarity=-0.083 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHHHHHH
Q 036324 48 EEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLVLNAI 89 (91)
Q Consensus 48 eE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ai 89 (91)
-.++..|+.+.- ..++..++...+.|.+++|+.+++.-+.+
T Consensus 22 ~~~l~~f~~v~~-~gs~~~aa~~l~~s~~~~s~~i~~le~~l 62 (265)
T 1b9m_A 22 PRRISLLKHIAL-SGSISQGAKDAGISYKSAWDAINEMNQLS 62 (265)
T ss_dssp HHHHHHHHHHHH-HSSHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 456777776555 45899999999999999999998876654
No 403
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=47.63 E-value=18 Score=26.26 Aligned_cols=28 Identities=21% Similarity=0.192 Sum_probs=23.6
Q ss_pred CChhHHHHHhCCCHHHHHHHHHHHHhCC
Q 036324 10 GSDIECVNQLRMDKRTFELLCGLLRING 37 (91)
Q Consensus 10 ~~~~~c~~~fRM~~~~F~~L~~~L~~~~ 37 (91)
++|...++.|+||+.+|.+-...|-..+
T Consensus 246 S~pe~I~~~f~~SK~~FKrAiG~L~K~~ 273 (285)
T 3go5_A 246 SSPDDIKATFGISKGQFKKALGGLMKAG 273 (285)
T ss_dssp SCHHHHHHHHSSCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHhhCC
Confidence 6899999999999999998777765443
No 404
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=47.59 E-value=11 Score=23.72 Aligned_cols=34 Identities=15% Similarity=0.034 Sum_probs=25.8
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
...+|.=.=-++.+.++|...=|.|..|+++||.
T Consensus 23 a~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~ 56 (215)
T 3e7q_A 23 TLACLKRHGFQGASVRKICAEAGVSVGLINHHYD 56 (215)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 3334433333578999999999999999999984
No 405
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=47.54 E-value=16 Score=23.67 Aligned_cols=32 Identities=6% Similarity=-0.092 Sum_probs=25.2
Q ss_pred HHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 52 CMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 52 amFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
..|.-.==++.+.++|...=|.|+.|+++||.
T Consensus 14 ~lf~~~G~~~~s~~~IA~~AGvskgtlY~hF~ 45 (208)
T 2g3b_A 14 TAIAQRGIRGLRVNDVAEVAGVSPGLLYYHFK 45 (208)
T ss_dssp HHHHHHHHHHCCHHHHHHHHTSCHHHHHHHHC
T ss_pred HHHHHhCcccCCHHHHHHHhCCCHHHHHHHCC
Confidence 34433333568999999999999999999994
No 406
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=47.52 E-value=15 Score=20.98 Aligned_cols=37 Identities=5% Similarity=0.166 Sum_probs=27.5
Q ss_pred ccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 45 VSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 45 v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
..+-++|.- +.-..+.+..+++..-+.|..||+++-+
T Consensus 12 ~~~~~~l~~--~r~~~glsq~~lA~~~gis~~~is~~e~ 48 (91)
T 1x57_A 12 LEVGKVIQQ--GRQSKGLTQKDLATKINEKPQVIADYES 48 (91)
T ss_dssp CHHHHHHHH--HHHTTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 344444433 3456788999999999999999999865
No 407
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=47.38 E-value=9.3 Score=24.57 Aligned_cols=35 Identities=6% Similarity=0.005 Sum_probs=27.0
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-....|.-.==++.+.++|+..=|.|+.||++||.
T Consensus 20 aA~~lf~~~G~~~~s~~~IA~~aGvsk~tlY~hF~ 54 (200)
T 2hyj_A 20 RAAEIASEEGLDGITIGRLAEELEMSKSGVHKHFG 54 (200)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHTTCS
T ss_pred HHHHHHHHcCcccCCHHHHHHHhCCChHHHHHHcC
Confidence 33444444444679999999999999999999984
No 408
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=47.27 E-value=14 Score=24.02 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=25.5
Q ss_pred HHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 51 LCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 51 vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+.+|.=.=-.+.+.++|+..=|.|..||++||.
T Consensus 45 ~~lf~~~G~~~~t~~~IA~~AGvs~~tlY~~F~ 77 (221)
T 3g7r_A 45 TRIFYAEGIHSVGIDRITAEAQVTRATLYRHFS 77 (221)
T ss_dssp HHHHHHHCSTTSCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHhCcccCCHHHHHHHhCCCHHHHHHHCC
Confidence 334433333568999999999999999999994
No 409
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=47.17 E-value=14 Score=23.58 Aligned_cols=25 Identities=24% Similarity=0.115 Sum_probs=22.1
Q ss_pred hcCcchhhhhhccccchhhHHHHHH
Q 036324 59 AHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 59 ~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
|.+.+.++|+..=|.|+.|+++||.
T Consensus 30 G~~~t~~~IA~~agvs~~tlY~~F~ 54 (196)
T 2qwt_A 30 GLGVPMDEIARRAGVGAGTVYRHFP 54 (196)
T ss_dssp CTTSCHHHHHHHTTSCHHHHHHHCS
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHCC
Confidence 3468999999999999999999984
No 410
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=47.14 E-value=7.8 Score=24.31 Aligned_cols=24 Identities=8% Similarity=0.070 Sum_probs=22.0
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++.+.+.|+.+=|.|+.|+++||.
T Consensus 22 ~~~ti~~IA~~agvs~~t~Y~~F~ 45 (189)
T 3geu_A 22 DGTTLDDIAKSVNIKKASLYYHFD 45 (189)
T ss_dssp HHCCHHHHHHHTTCCHHHHTTTCS
T ss_pred ccCCHHHHHHHhCCCHHHHHHHhC
Confidence 568999999999999999999984
No 411
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=47.00 E-value=16 Score=23.94 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=25.1
Q ss_pred cCcchhhhhhccccchhhHHHHHH---HHHHHHh
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN---LVLNAIL 90 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~---~Vl~ai~ 90 (91)
++.+.+.|+.+=|.|+.||++||. +++.|++
T Consensus 58 ~~~tv~~IA~~AGvs~~tlY~~F~sKe~Ll~av~ 91 (214)
T 2guh_A 58 REITLKDIAEDAGVSAPLIIKYFGSKEQLFDALV 91 (214)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHSSHHHHHHHHT
T ss_pred hhcCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 458999999999999999999995 4444443
No 412
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=46.88 E-value=45 Score=21.34 Aligned_cols=26 Identities=8% Similarity=0.138 Sum_probs=23.0
Q ss_pred cchhhhhhccccchhhHHHHHHHHHH
Q 036324 62 VKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 62 ~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
.+...++.+++.|..+|.+.+....+
T Consensus 52 ps~~~LA~~~~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 52 PTPNQLQEGMSISVEECTNRLRMFIQ 77 (135)
T ss_dssp CCHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 58889999999999999999987664
No 413
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=46.72 E-value=10 Score=23.61 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 46 SIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 46 ~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
=++-.+.+|.-.=-.+.+.+.|...=|.|+.|+++||.
T Consensus 16 il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~ 53 (196)
T 3he0_A 16 ILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIYRYFS 53 (196)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHTTCS
T ss_pred HHHHHHHHHHHhCcccCCHHHHHHHhCCCcchHHHhcC
Confidence 34444555554433669999999999999999999985
No 414
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=46.58 E-value=14 Score=24.53 Aligned_cols=33 Identities=12% Similarity=0.086 Sum_probs=25.6
Q ss_pred HHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 51 LCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 51 vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
..+|.-.--++.+.++|+.+=|.|+.||++||.
T Consensus 33 ~~lf~~~G~~~~s~~~IA~~agvs~~tlY~~F~ 65 (231)
T 2zcx_A 33 RELGTERGIREITLTDIAATVGMHKSALLRYFE 65 (231)
T ss_dssp HHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHhCCcccCCHHHHHHHhCCCHHHHHHhCC
Confidence 334433333579999999999999999999984
No 415
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=46.57 E-value=9.2 Score=23.84 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=25.6
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
...+|.-.=-++.+.++|+..=|.|+.|+++||.
T Consensus 19 a~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~ 52 (197)
T 3rd3_A 19 GYRIMAVKGFSGVGLNEILQSAGVPKGSFYHYFK 52 (197)
T ss_dssp HHHHHHHHCSTTCCHHHHHHHHTCCHHHHTTTCS
T ss_pred HHHHHHHCCcccCCHHHHHHHhCCChhhHHHHcC
Confidence 3344443333468999999999999999999984
No 416
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=46.44 E-value=9.9 Score=26.02 Aligned_cols=37 Identities=8% Similarity=0.150 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 47 IEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 47 veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++-.+.+|.-.=-.+.+.+.|..+-|.|..|+++||.
T Consensus 25 l~AA~~l~~e~G~~~~S~~~IA~~aGvs~~tlY~hF~ 61 (243)
T 2g7l_A 25 VDTAVALMRAEGLEKVTMRRLAQELDTGPASLYVYVA 61 (243)
T ss_dssp HHHHHHHHHHHCSSSCCHHHHHHHTTSCHHHHTTTCC
T ss_pred HHHHHHHHHhcCchhcCHHHHHHHHCCChhHHHHHcC
Confidence 3344444443333569999999999999999999984
No 417
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=46.44 E-value=10 Score=24.29 Aligned_cols=35 Identities=14% Similarity=0.063 Sum_probs=26.9
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
-....|.-.==++.+.++|...=|.|+.|+++||.
T Consensus 20 aA~~lf~~~Gy~~ts~~~IA~~agvs~gtlY~yF~ 54 (205)
T 1rkt_A 20 AAKTVFKRKGFELTTMKDVVEESGFSRGGVYLYFS 54 (205)
T ss_dssp HHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHTTCS
T ss_pred HHHHHHHHcCcccCCHHHHHHHHCCCcchhhhhCC
Confidence 34445544433679999999999999999999984
No 418
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=46.39 E-value=16 Score=23.83 Aligned_cols=36 Identities=11% Similarity=0.293 Sum_probs=28.0
Q ss_pred HHHHhhcC----cchhhhhhccc-----cchhhHHHHHHHHHHHH
Q 036324 54 FLHILAHH----VKSRTIHSRFL-----RSRETISRYFNLVLNAI 89 (91)
Q Consensus 54 FL~i~~~~----~~~r~i~~~F~-----~S~eTisr~f~~Vl~ai 89 (91)
.|..++.| .++.+|..... .|..||..|...+.+.+
T Consensus 167 vL~~l~~g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl 211 (233)
T 1ys7_A 167 LLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKL 211 (233)
T ss_dssp HHHHHHHTTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHh
Confidence 34455566 89999998887 89999999999888765
No 419
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=46.32 E-value=5.1 Score=25.47 Aligned_cols=24 Identities=13% Similarity=0.214 Sum_probs=21.1
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++.+.++|+..=|.|+.|+++||.
T Consensus 44 ~~~t~~~Ia~~agvs~~t~Y~~F~ 67 (212)
T 3nxc_A 44 QRITTAKLAASVGVSEAALYRHFP 67 (212)
T ss_dssp --CCHHHHHHHTTSCHHHHHTTCS
T ss_pred hhcCHHHHHHHhCCChhHHHHHCC
Confidence 569999999999999999999985
No 420
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=46.23 E-value=12 Score=22.79 Aligned_cols=39 Identities=8% Similarity=0.083 Sum_probs=29.5
Q ss_pred CccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 44 TVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 44 ~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+++-|.|.-- +.-..|.+..+++..-|.|..|||++.+
T Consensus 11 ~~~pG~~Lk~~-lr~~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 11 PIHPGEILAEE-LGFLDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp CCCHHHHHHHH-HHHTTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred CCCHHHHHHHH-HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 45566666531 2456789999999999999999999864
No 421
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=45.97 E-value=17 Score=23.14 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=26.5
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
....|.-.==++.+.++|+..=|.|+.|+++||.
T Consensus 14 A~~lf~~~Gy~~~s~~~IA~~AgvskgtlY~yF~ 47 (202)
T 2id6_A 14 AVEVFGKKGYDRATTDEIAEKAGVAKGLIFHYFK 47 (202)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTCCTHHHHHHHS
T ss_pred HHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 3344444334679999999999999999999994
No 422
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=45.91 E-value=14 Score=22.15 Aligned_cols=28 Identities=18% Similarity=0.225 Sum_probs=23.3
Q ss_pred HHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 56 HILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 56 ~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+.-..|.+..+++..-|.|..||+++-+
T Consensus 17 ~r~~~glsq~~lA~~~gis~~~i~~~e~ 44 (114)
T 3op9_A 17 LKKEHGLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp HHHHHTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3455678999999999999999999865
No 423
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=45.82 E-value=13 Score=23.93 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=22.0
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++.+.+.|...=|.|+.|+++||.
T Consensus 47 ~~~tv~~IA~~agvs~~t~Y~~F~ 70 (215)
T 2qko_A 47 RGLTFRAVDVEANVPKGTASNYFP 70 (215)
T ss_dssp TTCCHHHHHHHSSSTTTCHHHHCS
T ss_pred hhccHHHHHHHcCCCcchHHHhCC
Confidence 568999999999999999999994
No 424
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=45.63 E-value=7.7 Score=25.21 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=21.8
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++.+.++|..+=|.|+.|+++||.
T Consensus 39 ~~~tv~~Ia~~Agvs~~t~Y~~F~ 62 (185)
T 3o60_A 39 ESISIKDLCEQARVSRATFYRHHK 62 (185)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCS
T ss_pred ccCCHHHHHHHhCCCHHHHHHHcC
Confidence 458899999999999999999995
No 425
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=45.62 E-value=22 Score=21.51 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=14.9
Q ss_pred CcchhhhhhccccchhhHHHHHHH
Q 036324 61 HVKSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 61 ~~~~r~i~~~F~~S~eTisr~f~~ 84 (91)
+.+..+++..++.|..+++|.|++
T Consensus 23 ~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 23 EWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp CCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 345555666666666666666654
No 426
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=45.46 E-value=47 Score=20.81 Aligned_cols=67 Identities=13% Similarity=0.224 Sum_probs=39.1
Q ss_pred hhHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHH-HHHHHHHHhh----cCcchhhhhhccccchhhHHHHHHHH
Q 036324 12 DIECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEE-QLCMFLHILA----HHVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 12 ~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE-~vamFL~i~~----~~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
+.-|+..-|..+..-..+-+.|++. + ++..+ .+-..|+... .+.+..+++...+.+++||++.+...
T Consensus 5 ~cl~f~l~ra~r~~~~~~~~~l~~~-g------Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~L 76 (148)
T 4fx0_A 5 ECACYTTRRAARQLGQAYDRALRPS-G------LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVM 76 (148)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHGGG-T------CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHc-C------CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 3445555565555544455556553 3 34333 2222333221 23689999999999999999998764
No 427
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=45.39 E-value=25 Score=21.44 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHhhcCcchhhhhhcccc----chhhHHHHHHHHHH
Q 036324 46 SIEEQLCMFLHILAHHVKSRTIHSRFLR----SRETISRYFNLVLN 87 (91)
Q Consensus 46 ~veE~vamFL~i~~~~~~~r~i~~~F~~----S~eTisr~f~~Vl~ 87 (91)
..|..|-.+||.-+ +.+.++|.+.++. |..||++.+....+
T Consensus 35 ~~e~~VL~~L~~~~-~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~ 79 (99)
T 2k4b_A 35 NAELIVMRVIWSLG-EARVDEIYAQIPQELEWSLATVKTLLGRLVK 79 (99)
T ss_dssp CSCSHHHHHHHHHS-CEEHHHHHHTCCGGGCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CCCHHHHHHHHhcccCCCHhhHHHHHHHHHH
Confidence 34567888899844 7999999999974 68999998876543
No 428
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=45.06 E-value=23 Score=21.35 Aligned_cols=41 Identities=12% Similarity=0.111 Sum_probs=29.3
Q ss_pred CccHHHHHHHHHHHhh---cCcchhhhhhccccchhhHHHHHHHH
Q 036324 44 TVSIEEQLCMFLHILA---HHVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 44 ~v~veE~vamFL~i~~---~~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
.++.+|. .++-++.. .+.+.++++...+.+..||++++...
T Consensus 17 ~Lt~~q~-~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~L 60 (91)
T 2dk5_A 17 GSDNQEK-LVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNL 60 (91)
T ss_dssp CSCSSHH-HHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHH-HHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4555443 33333332 26999999999999999999988764
No 429
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=45.03 E-value=15 Score=24.65 Aligned_cols=35 Identities=20% Similarity=0.142 Sum_probs=27.2
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~ 84 (91)
.+.+|.-.=-.+.+.++|...=|.|..||++||..
T Consensus 57 A~~lf~e~G~~~~Ti~~IA~~AGvs~~t~Y~yF~s 91 (260)
T 2of7_A 57 TYGLIRQQGYEATTVEQIAERAEVSPSTVLRYFPT 91 (260)
T ss_dssp HHHHHHHHCSTTCCHHHHHHHHTSCHHHHHHHCSS
T ss_pred HHHHHHHhCcccccHHHHHHHhCCChHHHHHHcCC
Confidence 34445444345689999999999999999999953
No 430
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=45.00 E-value=12 Score=24.59 Aligned_cols=36 Identities=11% Similarity=0.222 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 48 EEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 48 eE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+-.+.+|.-.==++.+.+.|..+=|.|+.||++||.
T Consensus 42 ~AA~~lf~~~G~~~~s~~~IA~~AGvs~~tlY~~F~ 77 (237)
T 3kkd_A 42 DAAMRLIVRDGVRAVRHRAVAAEAQVPLSATTYYFK 77 (237)
T ss_dssp HHHHHHHHHHCGGGCCHHHHHHHHTSCTTTC-----
T ss_pred HHHHHHHHhcChhhcCHHHHHHHhCCChhHHHHHcC
Confidence 334445444333679999999999999999999996
No 431
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=44.86 E-value=17 Score=25.42 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHhh--cCcchhhhhhccccchhhHHHHHHHHH
Q 036324 46 SIEEQLCMFLHILA--HHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 46 ~veE~vamFL~i~~--~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
+++..+.|.-+.-. .+.+..+|+...+-+++|++|+.+...
T Consensus 19 sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~ 61 (265)
T 2ia2_A 19 SLARGLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLV 61 (265)
T ss_dssp HHHHHHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45555555444332 357899999999999999999988654
No 432
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=44.82 E-value=17 Score=23.78 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 48 EEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 48 eE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+-...+|.-.=-++.+.+.|...=|.|+.||++||.
T Consensus 21 ~AA~~lf~~~G~~~~s~~~IA~~AGvs~~tlY~~F~ 56 (208)
T 3v6g_A 21 EAAERVIARQGLGGLSHRRVAAEANVPVGSTTYYFN 56 (208)
T ss_dssp HHHHHHHHHHCTTCCCHHHHHHHHTSCHHHHHHHCS
T ss_pred HHHHHHHHHhCcccCCHHHHHHHhCCCchhHHHHcC
Confidence 334444444444678999999999999999999994
No 433
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=44.44 E-value=15 Score=25.37 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=22.1
Q ss_pred hhcCcchhhhhhccccchhhHHHHHH
Q 036324 58 LAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 58 ~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.-+|.+.+++++..|.|.+|||++.+
T Consensus 40 ~~~gitQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 40 QQHNIPQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCChHHHHHHHh
Confidence 44678889999999999999999964
No 434
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=44.41 E-value=38 Score=21.12 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=23.0
Q ss_pred cchhhhhhccccchhhHHHHHHHHHH
Q 036324 62 VKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 62 ~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
.+...|+.+.+.|..||.+.++...+
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~ 77 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQ 77 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 68899999999999999999887654
No 435
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=44.33 E-value=48 Score=22.77 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=23.1
Q ss_pred CCCCCCCCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHH
Q 036324 37 GGLKADGTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 37 ~~l~~s~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
+.+++...++.|..| +..|+.|+.||.+.+...
T Consensus 25 g~~~~g~~lPse~~L----------------a~~~~vSr~tvr~Al~~L 57 (236)
T 3edp_A 25 DEYKTGMLMPNETAL----------------QEIYSSSRTTIRRAVDLL 57 (236)
T ss_dssp TSSCCCC--CCHHHH----------------HHHTTCCHHHHHHHHHHH
T ss_pred CCCCCcCCCcCHHHH----------------HHHHCcCHHHHHHHHHHH
Confidence 556666667666654 679999999998877654
No 436
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=44.30 E-value=48 Score=22.80 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=17.2
Q ss_pred hhhhhhccccchhhHHHHHHHH
Q 036324 64 SRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 64 ~r~i~~~F~~S~eTisr~f~~V 85 (91)
-+.++..|+.|+.||.+.+...
T Consensus 37 e~~La~~~~vSr~tvr~Al~~L 58 (243)
T 2wv0_A 37 EREYAEQFGISRMTVRQALSNL 58 (243)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHH
Confidence 3456789999999998877654
No 437
>2y2z_A SIM16, SIMR, putative repressor simreg2; transcription, simocyclinone regulator, TETR-family; 1.95A {Streptomyces antibioticus} PDB: 2y30_A* 2y31_A* 3zql_A
Probab=44.17 E-value=11 Score=26.27 Aligned_cols=39 Identities=8% Similarity=0.123 Sum_probs=28.2
Q ss_pred ccHHHHHHHHHHHhh----cCcchhhhhhccccchhhHHHHHH
Q 036324 45 VSIEEQLCMFLHILA----HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 45 v~veE~vamFL~i~~----~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+-++-|.-.+-.+. .+.+.+.|+.+-|.|..|+++||.
T Consensus 27 ~tr~~Il~AA~~L~~e~G~~~~Smr~IA~~aGVs~~tlY~hF~ 69 (267)
T 2y2z_A 27 LSRDQIVRAAVKVADTEGVEAASMRRVAAELGAGTMSLYYYVP 69 (267)
T ss_dssp ECHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHhcCcccCCHHHHHHHhCCCHHHHHHHcC
Confidence 444444444443332 458999999999999999999984
No 438
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=44.15 E-value=27 Score=20.05 Aligned_cols=29 Identities=14% Similarity=0.062 Sum_probs=25.1
Q ss_pred hhHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 036324 12 DIECVNQLRMDKRTFELLCGLLRINGGLK 40 (91)
Q Consensus 12 ~~~c~~~fRM~~~~F~~L~~~L~~~~~l~ 40 (91)
-..|-+.++++|+.-..+...|.++|.++
T Consensus 28 I~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 28 IEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 35788999999999999999999988643
No 439
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=44.12 E-value=14 Score=20.56 Aligned_cols=22 Identities=9% Similarity=-0.102 Sum_probs=17.4
Q ss_pred chhhhhhccccchhhHHHHHHH
Q 036324 63 KSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 63 ~~r~i~~~F~~S~eTisr~f~~ 84 (91)
+-.+++...+.|.+||++..++
T Consensus 12 ~~~eva~~lgvsrstiy~~~~~ 33 (66)
T 1z4h_A 12 DLKFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHC
Confidence 4456778889999999998764
No 440
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=44.09 E-value=15 Score=24.23 Aligned_cols=27 Identities=15% Similarity=0.022 Sum_probs=24.1
Q ss_pred CcchhhhhhccccchhhHHHHHHHHHH
Q 036324 61 HVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 61 ~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
..++..++..++.|.+||++.+....+
T Consensus 41 ~~s~~eLA~~lglS~~tv~~rl~~L~~ 67 (171)
T 2e1c_A 41 KAPLREISKITGLAESTIHERIRKLRE 67 (171)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 489999999999999999999887654
No 441
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=44.09 E-value=10 Score=24.16 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=26.0
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
....|.-.==++.+.++|...=|.|+.|+++||.
T Consensus 23 A~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~yF~ 56 (203)
T 3ccy_A 23 AAAMFARQGYSETSIGDIARACECSKSRLYHYFD 56 (203)
T ss_dssp HHHHHHHTCTTTSCHHHHHHHTTCCGGGGTTTCS
T ss_pred HHHHHHHcCcccCCHHHHHHHhCCCcCeeeeeeC
Confidence 3334443333678999999999999999999984
No 442
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=44.03 E-value=16 Score=23.60 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=25.9
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
...+|.-.=-++.+.+.|..+=|.|+.|+++||.
T Consensus 14 A~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~ 47 (228)
T 3nnr_A 14 SLELFNDKGERNITTNHIAAHLAISPGNLYYHFR 47 (228)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHhChhhcCHHHHHHHhCCCCccchhcCC
Confidence 3344443333568999999999999999999994
No 443
>1z0x_A Transcriptional regulator, TETR family; structural genomics, PSI, P structure initiative; 2.40A {Enterococcus faecalis} SCOP: a.4.1.9 a.121.1.1
Probab=44.01 E-value=9 Score=25.48 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=21.9
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+.+.+.|...=|.|+.|+++||.
T Consensus 25 ~~~s~~~IA~~aGvs~~tlY~~F~ 48 (220)
T 1z0x_A 25 EQLSMRKVAKQLGVQAPAIYWYFK 48 (220)
T ss_dssp GGCCHHHHHHHHTSCHHHHHTTCS
T ss_pred ccCCHHHHHHHcCCCHHHHHHhcC
Confidence 358999999999999999999985
No 444
>2vpr_A Tetracycline resistance repressor protein; transcription, metal-binding, antibiotic resistance, transcr regulator; HET: TDC; 2.49A {Pasteurella multocida}
Probab=43.71 E-value=8.3 Score=25.69 Aligned_cols=36 Identities=8% Similarity=0.139 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 48 EEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 48 eE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+-.+.+|.-.=-.+.+.+.|..+-|.|..|+++||.
T Consensus 11 ~aA~~l~~~~G~~~~s~~~IA~~agvs~~tlY~~f~ 46 (207)
T 2vpr_A 11 DNALILLNEVGIEGLTTRKLAQKIGVEQPTLYWHVK 46 (207)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHTTTCC
T ss_pred HHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcC
Confidence 334444443333468999999999999999999985
No 445
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=43.47 E-value=4.8 Score=25.99 Aligned_cols=24 Identities=13% Similarity=0.033 Sum_probs=22.0
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++.+.++|...=|.|+.|+++||.
T Consensus 31 ~~~ti~~Ia~~Agvs~~t~Y~~F~ 54 (220)
T 3lsj_A 31 GSLSLREVTRAAGIVPAGFYRHFS 54 (220)
T ss_dssp GGCCHHHHHHHHTSCGGGGTTTCS
T ss_pred ccCCHHHHHHHhCCChhHHHHHcC
Confidence 568999999999999999999996
No 446
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=43.42 E-value=10 Score=24.59 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=24.0
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
....|.-.=-++.+.++|+.+=|.|+.||++||.
T Consensus 33 A~~lf~e~G~~~~s~~~IA~~aGvskgtlY~yF~ 66 (214)
T 2oer_A 33 AVQVLASEGAQRFTTARVAERAGVSIGSLYQYFP 66 (214)
T ss_dssp HHHC------CCCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHhhCcccccHHHHHHHhCCCCchHHHhCC
Confidence 3444444444678999999999999999999994
No 447
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=43.21 E-value=36 Score=21.68 Aligned_cols=28 Identities=0% Similarity=0.031 Sum_probs=24.2
Q ss_pred cCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
...++..++...+.|..|+|+..+..-+
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~Le~ 63 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRNLVE 63 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4589999999999999999999887543
No 448
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=43.13 E-value=16 Score=21.68 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=23.5
Q ss_pred HHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 56 HILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 56 ~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+.-..+.+..+++..-+.|..||+++-+
T Consensus 32 lR~~~glTq~eLA~~~GiS~~tis~iE~ 59 (88)
T 3t76_A 32 LLIDRDMKKGELREAVGVSKSTFAKLGK 59 (88)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3456788999999999999999998754
No 449
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=42.86 E-value=11 Score=25.69 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=29.9
Q ss_pred CccHHHHHHHHHHHhhc----CcchhhhhhccccchhhHHHHHH
Q 036324 44 TVSIEEQLCMFLHILAH----HVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 44 ~v~veE~vamFL~i~~~----~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
..+-++-|.-.+-.+.. +.+.|.|+.+=|.|..|+++||.
T Consensus 28 ~~tr~~Il~aA~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~hF~ 71 (241)
T 2hxi_A 28 RWSTEQILDAAAELLLAGDAETFSVRKLAASLGTDSSSLYRHFR 71 (241)
T ss_dssp CCCHHHHHHHHHHHHSSSSCCCCCHHHHHHHTTSCHHHHHHHTS
T ss_pred hhHHHHHHHHHHHHHHhcCcccCCHHHHHHHhCcCHHHHHHHcC
Confidence 34555555555555433 57999999999999999999994
No 450
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=42.79 E-value=5.1 Score=26.65 Aligned_cols=35 Identities=9% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
+|-.|+ .++...+++.++..-+.|+++||+.+.+.
T Consensus 2 ~L~~f~-~v~~~~s~s~AA~~L~isq~avS~~i~~L 36 (300)
T 3mz1_A 2 GMRAFL-RVVETGNFTRASASLNMPKATVTNLIQGL 36 (300)
T ss_dssp ------------------------------------
T ss_pred cHHHHH-HHHhcCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 344444 45566799999999999999999998764
No 451
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=42.75 E-value=16 Score=23.57 Aligned_cols=26 Identities=8% Similarity=-0.024 Sum_probs=23.2
Q ss_pred cchhhhhhccccchhhHHHHHHHHHH
Q 036324 62 VKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 62 ~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
.++..++...+.|.+||.+.++...+
T Consensus 18 ~s~~~la~~lg~s~~tv~~rl~~L~~ 43 (162)
T 3i4p_A 18 LAVADLAKKVGLSTTPCWRRIQKMEE 43 (162)
T ss_dssp SCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 68999999999999999999987654
No 452
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=42.71 E-value=17 Score=25.35 Aligned_cols=41 Identities=10% Similarity=0.041 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHhh--cCcchhhhhhccccchhhHHHHHHHHH
Q 036324 46 SIEEQLCMFLHILA--HHVKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 46 ~veE~vamFL~i~~--~~~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
+++..+.|.-+.-. .+.+..+|+...+.+++|++|+.+...
T Consensus 21 sl~r~l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~ 63 (260)
T 2o0y_A 21 SVTRVIDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMC 63 (260)
T ss_dssp HHHHHHHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45555555433322 468999999999999999999988654
No 453
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=42.59 E-value=12 Score=25.34 Aligned_cols=34 Identities=9% Similarity=0.081 Sum_probs=25.6
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+.+|.-.=-.+.+.+.|...=|.|..|+++||.
T Consensus 25 A~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~hF~ 58 (237)
T 2hxo_A 25 AVELLDTVGERGLTFRALAERLATGPGAIYWHIT 58 (237)
T ss_dssp HHHHHHHTTTTTCCHHHHHHHHTSCGGGGGGTCC
T ss_pred HHHHHHhcCcccCCHHHHHHHHCCChHHHHHhcC
Confidence 3344433333458999999999999999999984
No 454
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=42.59 E-value=16 Score=22.23 Aligned_cols=28 Identities=14% Similarity=0.049 Sum_probs=23.7
Q ss_pred HHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 56 HILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 56 ~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+.-..|.+..+++..-|.|..||+++-+
T Consensus 31 ~R~~~gltq~elA~~~gis~~~is~~E~ 58 (111)
T 3mlf_A 31 LRTDYGLTQKELGDLFKVSSRTIQNMEK 58 (111)
T ss_dssp HHHHTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 4456788999999999999999999754
No 455
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=42.48 E-value=12 Score=24.58 Aligned_cols=38 Identities=8% Similarity=-0.002 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 46 SIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 46 ~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
=++-.+.+|.-.=-.+.+.++|+..=|.|..|+++||.
T Consensus 35 Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~ 72 (230)
T 2iai_A 35 LLSVAVQVFIERGYDGTSMEHLSKAAGISKSSIYHHVT 72 (230)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHTTTCS
T ss_pred HHHHHHHHHHHcCccccCHHHHHHHHCCChhHHHHhCC
Confidence 35555566655444679999999999999999999984
No 456
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=42.21 E-value=25 Score=23.25 Aligned_cols=43 Identities=9% Similarity=0.041 Sum_probs=30.5
Q ss_pred ccHHHHHHHHHHHhhcC----cchhhhhhcc-----ccchhhHHHHHHHHHHHH
Q 036324 45 VSIEEQLCMFLHILAHH----VKSRTIHSRF-----LRSRETISRYFNLVLNAI 89 (91)
Q Consensus 45 v~veE~vamFL~i~~~~----~~~r~i~~~F-----~~S~eTisr~f~~Vl~ai 89 (91)
.|..|.= .|..++.| .++.+|.... ..|..||..+...+.+.+
T Consensus 154 LT~rE~~--vL~~l~~~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL 205 (238)
T 2gwr_A 154 LTPLEFD--LLVALARKPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKV 205 (238)
T ss_dssp CCHHHHH--HHHHHHHSTTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHH
T ss_pred cCHHHHH--HHHHHHHCCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHh
Confidence 4444532 23444455 9999999987 889999999999888765
No 457
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=41.99 E-value=34 Score=22.38 Aligned_cols=27 Identities=7% Similarity=0.130 Sum_probs=23.8
Q ss_pred CcchhhhhhccccchhhHHHHHHHHHH
Q 036324 61 HVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 61 ~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
..++..++...+.|.+||++.+....+
T Consensus 31 ~~s~~eLA~~lglS~~tv~~~l~~L~~ 57 (171)
T 2ia0_A 31 RLTISELSEQLKKPESTIHFRIKKLQE 57 (171)
T ss_dssp TCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 479999999999999999999887644
No 458
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=41.76 E-value=20 Score=21.86 Aligned_cols=28 Identities=4% Similarity=-0.057 Sum_probs=23.0
Q ss_pred HHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 56 HILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 56 ~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
..-..|.+..+++..-|.|.+|||++-+
T Consensus 20 ~R~~~glsq~~lA~~~gis~~~is~~E~ 47 (126)
T 3ivp_A 20 ARKKQGLTREQVGAMIEIDPRYLTNIEN 47 (126)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHhCcCHHHHHHHHC
Confidence 3456788899999999999999998754
No 459
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=41.47 E-value=37 Score=20.20 Aligned_cols=40 Identities=18% Similarity=0.023 Sum_probs=29.9
Q ss_pred CccHHHHHHHHHH--HhhcCcchhhhhhccccchhhHHHHHH
Q 036324 44 TVSIEEQLCMFLH--ILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 44 ~v~veE~vamFL~--i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.....+.++--|- .-..|.+..+++..-|.|..|||++-+
T Consensus 22 ~~~~~~~~g~~l~~~R~~~glsq~~lA~~~gis~~~is~~E~ 63 (117)
T 3f52_A 22 EPLLREALGAALRSFRADKGVTLRELAEASRVSPGYLSELER 63 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 3445555655543 456789999999999999999998753
No 460
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=41.40 E-value=26 Score=21.56 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=29.3
Q ss_pred ccHHHHHHHHHHHhhc-----CcchhhhhhccccchhhHHHHHHH
Q 036324 45 VSIEEQLCMFLHILAH-----HVKSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 45 v~veE~vamFL~i~~~-----~~~~r~i~~~F~~S~eTisr~f~~ 84 (91)
-+.|.++|=|+ +.| +.+-+.++..=+.|..||.|-.+.
T Consensus 20 s~~e~~ia~yi--l~~~~~~~~~si~elA~~~~vS~aTv~Rf~kk 62 (111)
T 2o3f_A 20 PPSERKLADYI--LAHPHXAIESTVNEISALANSSDAAVIRLCXS 62 (111)
T ss_dssp CHHHHHHHHHH--HHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHH--HHChHHHHhcCHHHHHHHHCCCHHHHHHHHHH
Confidence 34567766654 544 689999999999999999997654
No 461
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=41.38 E-value=18 Score=21.63 Aligned_cols=37 Identities=11% Similarity=0.073 Sum_probs=26.5
Q ss_pred HHHHHHHHH--HHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 47 IEEQLCMFL--HILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 47 veE~vamFL--~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
..+.++--| +....|.+..+++..-+.|..||+++-+
T Consensus 25 ~~~~ig~~lr~~R~~~gltq~elA~~~gis~~~is~iE~ 63 (99)
T 3g5g_A 25 LLSKVSFVIKKIRLEKGMTQEDLAYKSNLDRTYISGIER 63 (99)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 344444333 3456788899999999999999998753
No 462
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=41.36 E-value=30 Score=21.87 Aligned_cols=27 Identities=11% Similarity=0.078 Sum_probs=23.5
Q ss_pred hhcCcchhhhhhccccchhhHHHHHHH
Q 036324 58 LAHHVKSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 58 ~~~~~~~r~i~~~F~~S~eTisr~f~~ 84 (91)
-..+.++..++..++.|..|+++++++
T Consensus 153 ~~~~~~~~~ia~~l~is~~tv~~~l~~ 179 (184)
T 3rqi_A 153 AENNNNISATARALNMHRRTLQRKLAK 179 (184)
T ss_dssp HHTTSCHHHHHHHHTSCHHHHHHHHCC
T ss_pred HhccccHHHHHHHcCCcHHHHHHHHHh
Confidence 356788999999999999999999864
No 463
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=41.33 E-value=39 Score=20.07 Aligned_cols=29 Identities=3% Similarity=0.049 Sum_probs=23.9
Q ss_pred hcCcchhhhhhcc-ccchhhHHHHHHHHHH
Q 036324 59 AHHVKSRTIHSRF-LRSRETISRYFNLVLN 87 (91)
Q Consensus 59 ~~~~~~r~i~~~F-~~S~eTisr~f~~Vl~ 87 (91)
..+.++..++... +.|..|+|++....-+
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~ 65 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCG 65 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHH
Confidence 3458999999999 4999999999886543
No 464
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=40.35 E-value=16 Score=23.94 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=21.6
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++.+.++|...=|.|+.|+++||.
T Consensus 32 ~~~tv~~IA~~agvs~~t~Y~~F~ 55 (231)
T 2qib_A 32 DEVSIDEIASAAGISRPLVYHYFP 55 (231)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHCS
T ss_pred hhcCHHHHHHHhCCCHHHHHHHCC
Confidence 468899999999999999999985
No 465
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=40.30 E-value=18 Score=21.76 Aligned_cols=37 Identities=8% Similarity=0.013 Sum_probs=27.0
Q ss_pred cHHHHHHHHH--HHhhcCcchhhhhhccccchhhHHHHH
Q 036324 46 SIEEQLCMFL--HILAHHVKSRTIHSRFLRSRETISRYF 82 (91)
Q Consensus 46 ~veE~vamFL--~i~~~~~~~r~i~~~F~~S~eTisr~f 82 (91)
...+.++--| ..-..|.+..+++..-|.|.+||+++-
T Consensus 17 ~~~~~~g~~lr~~R~~~gltq~elA~~~gis~~~is~~E 55 (114)
T 3vk0_A 17 DLRAVLAYNMRLFRVNKGWSQEELARQCGLDRTYVSAVE 55 (114)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHH
Confidence 3344444444 345678899999999999999999874
No 466
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=40.25 E-value=5.9 Score=26.47 Aligned_cols=29 Identities=7% Similarity=0.012 Sum_probs=0.0
Q ss_pred hcCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 59 AHHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 59 ~~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
..|.+.+.|+..++.|.+|++|+..+.-.
T Consensus 156 ~~G~s~~~Ia~~l~vs~~T~yr~l~~~~~ 184 (193)
T 3plo_X 156 AQGIPRKQVALIYDVALSTLYKKHPAKRA 184 (193)
T ss_dssp -----------------------------
T ss_pred HCCCCHHHHHHHHCcCHHHHHHHHhhhHH
Confidence 35789999999999999999999876433
No 467
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=40.00 E-value=70 Score=22.49 Aligned_cols=21 Identities=10% Similarity=0.025 Sum_probs=16.5
Q ss_pred hhhhhccccchhhHHHHHHHH
Q 036324 65 RTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 65 r~i~~~F~~S~eTisr~f~~V 85 (91)
+.++..|+.|+.||.+.+...
T Consensus 57 ~~La~~~~vSr~tvr~Al~~L 77 (272)
T 3eet_A 57 ARIREEYGVSDTVALEARKVL 77 (272)
T ss_dssp HHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 445689999999998877654
No 468
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=39.83 E-value=7.4 Score=24.27 Aligned_cols=34 Identities=12% Similarity=-0.037 Sum_probs=20.8
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+.+|.-.--++.+.+.|..+=|.|+.|+++||.
T Consensus 21 A~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~F~ 54 (199)
T 3on2_A 21 AESTLEKDGVDGLSLRQLAREAGVSHAAPSKHFR 54 (199)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHTC-----CCCSSS
T ss_pred HHHHHHhcChhhhhHHHHHHHhCCChHHHHHHhC
Confidence 3444443333458999999999999999999984
No 469
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=39.71 E-value=61 Score=19.73 Aligned_cols=27 Identities=11% Similarity=0.048 Sum_probs=22.7
Q ss_pred CcchhhhhhccccchhhHHHHHHHHHH
Q 036324 61 HVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 61 ~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
..+-+.|+..++.|..||.+.+...-+
T Consensus 26 ~~s~~ela~~~~i~~~~v~~il~~L~~ 52 (129)
T 2y75_A 26 PTSLKSIAQTNNLSEHYLEQLVSPLRN 52 (129)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 467888999999999999998876544
No 470
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=39.61 E-value=48 Score=20.77 Aligned_cols=33 Identities=9% Similarity=0.062 Sum_probs=25.9
Q ss_pred HHHhh-cCcchhhhhhcc-ccchhhHHHHHHHHHH
Q 036324 55 LHILA-HHVKSRTIHSRF-LRSRETISRYFNLVLN 87 (91)
Q Consensus 55 L~i~~-~~~~~r~i~~~F-~~S~eTisr~f~~Vl~ 87 (91)
|+.+. .+.++..++... +.|..|+|++....-+
T Consensus 41 L~~L~~g~~~~~eLa~~l~gis~~tls~~L~~Le~ 75 (131)
T 1yyv_A 41 LVALRDGTHRFSDLRRXMGGVSEXMLAQSLQALEQ 75 (131)
T ss_dssp HHHGGGCCEEHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 34443 348999999999 7999999999887543
No 471
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=39.59 E-value=22 Score=22.01 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=22.8
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISR 80 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr 80 (91)
+.-+..|-.++ +.+++.++..-|.+.+||||
T Consensus 12 ~~es~il~~la-~~gq~~vA~~iGV~~StISR 42 (97)
T 1xwr_A 12 RIESALLNKIA-MLGTEKTAEAVGVDKSQISR 42 (97)
T ss_dssp HHHHHHHHHHH-HHCHHHHHHHHTCCTTTHHH
T ss_pred HHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHH
Confidence 33334444443 57889999999999999999
No 472
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=39.38 E-value=13 Score=21.49 Aligned_cols=24 Identities=8% Similarity=0.173 Sum_probs=20.8
Q ss_pred hcCcchhhhhhccccchhhHHHHH
Q 036324 59 AHHVKSRTIHSRFLRSRETISRYF 82 (91)
Q Consensus 59 ~~~~~~r~i~~~F~~S~eTisr~f 82 (91)
..|.+...++..-|.|.+|||+..
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~ 43 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANAL 43 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 667899999999999999999764
No 473
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=39.30 E-value=15 Score=22.10 Aligned_cols=24 Identities=8% Similarity=0.141 Sum_probs=21.5
Q ss_pred hcCcchhhhhhccccchhhHHHHH
Q 036324 59 AHHVKSRTIHSRFLRSRETISRYF 82 (91)
Q Consensus 59 ~~~~~~r~i~~~F~~S~eTisr~f 82 (91)
..|.+..+++..-+.|.+||+++-
T Consensus 47 ~~glsq~elA~~~gis~~~is~~E 70 (107)
T 2jvl_A 47 EPTMTQAELGKEIGETAATVASYE 70 (107)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 668899999999999999999875
No 474
>4ac0_A Tetracycline repressor protein class B from trans TN1 0; transcription; HET: MIY; 2.45A {Escherichia coli}
Probab=39.09 E-value=12 Score=24.95 Aligned_cols=34 Identities=9% Similarity=0.103 Sum_probs=25.9
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+.+|--.=-.+.+.+.|..+=|.|..|+++||.
T Consensus 12 A~~l~~~~G~~~~s~~~IA~~aGvs~~tlY~~F~ 45 (202)
T 4ac0_A 12 ALELLNEVGIEGLTTRKLAQKLGVEQPTLYWHVK 45 (202)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHTSCHHHHHTTCS
T ss_pred HHHHHHhcCcccCCHHHHHHHhCCCchhHHhhcC
Confidence 3344433333468999999999999999999984
No 475
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=38.72 E-value=6.5 Score=25.36 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=0.0
Q ss_pred hcCcchhhhhhccccchhhHHHHH
Q 036324 59 AHHVKSRTIHSRFLRSRETISRYF 82 (91)
Q Consensus 59 ~~~~~~r~i~~~F~~S~eTisr~f 82 (91)
..|.+..+++...+.|++||||+-
T Consensus 12 ~~gltq~elA~~lgis~~~vs~~e 35 (158)
T 2p5t_A 12 THDLTQLEFARIVGISRNSLSRYE 35 (158)
T ss_dssp ------------------------
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHH
Confidence 456788999999999999999873
No 476
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=38.61 E-value=31 Score=24.27 Aligned_cols=68 Identities=9% Similarity=0.098 Sum_probs=47.1
Q ss_pred ChhHHHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHH-HHHHHHHHhh-cCcchhhhhhccccchhhHHHHHHHH
Q 036324 11 SDIECVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEE-QLCMFLHILA-HHVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 11 ~~~~c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE-~vamFL~i~~-~~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
+-..|...++.++ .+.++.+.+...++ +|..+ .|-.+||.-+ .+.+..+++...+.+..||++.+...
T Consensus 5 ~~~~~~~l~~~~~-~~~~~~~~~l~~~~------lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rL 74 (250)
T 1p4x_A 5 NHDKIRDFIIIEA-YMFRFKKKVKPEVD------MTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVL 74 (250)
T ss_dssp CCSHHHHHHHHHH-HHHHHHHHHTTTCS------SCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHH
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHhhhcC------CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHH
Confidence 4567888888666 44444444433343 55555 4666666654 36899999999999999999988764
No 477
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=38.49 E-value=21 Score=24.81 Aligned_cols=34 Identities=24% Similarity=0.171 Sum_probs=26.3
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
.+.+|.-.--.+.+.+.|+.+=|.|..|+++||.
T Consensus 129 a~~l~~~~G~~~~T~~~IA~~AGvs~gtlY~yF~ 162 (311)
T 4ich_A 129 AWRLIARRGYHNVRIHDIASELGTSNATIHYHFP 162 (311)
T ss_dssp HHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHHHHHHcCCccCCHHHHHHHhCCCchhHHHhCC
Confidence 3444443333568999999999999999999995
No 478
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=38.26 E-value=5.1 Score=25.86 Aligned_cols=37 Identities=8% Similarity=0.075 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 47 IEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 47 veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++-.+.+|.-.=-.+.+.+.|..+=|.|..|+++||.
T Consensus 36 l~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~ 72 (212)
T 2np3_A 36 LTAARVCFAERGFDATSLRRIAETAGVDQSLVHHFYG 72 (212)
T ss_dssp HHHHHHHC---------------------------CC
T ss_pred HHHHHHHHHHcCcccccHHHHHHHcCCCHHHHHHHhC
Confidence 3334444443333468999999999999999999984
No 479
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=37.96 E-value=15 Score=22.98 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=17.8
Q ss_pred chhhhhhccccchhhHHHHHHHH
Q 036324 63 KSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 63 ~~r~i~~~F~~S~eTisr~f~~V 85 (91)
+-+.++..|+.|+.||.+.+...
T Consensus 37 s~~~La~~~~vSr~tvr~Al~~L 59 (126)
T 3ic7_A 37 SVREYASIVEVNANTVMRSYEYL 59 (126)
T ss_dssp CTTTTTTCC-CCSGGGHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 55678899999999998877653
No 480
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=37.88 E-value=68 Score=22.66 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=36.4
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhhcCcchhhhhhccccch
Q 036324 15 CVNQLRMDKRTFELLCGLLRINGGLKADGTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSR 75 (91)
Q Consensus 15 c~~~fRM~~~~F~~L~~~L~~~~~l~~s~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~ 75 (91)
|...|-.+|. +=...|.+++.+++. ..+.+|-||+....+..-..|++..+...
T Consensus 30 ~~~~FN~~Pk---kGI~~L~~~g~l~~~----~~~~iA~fL~~~~~~L~k~~iGeyLg~~~ 83 (230)
T 1ku1_A 30 CTNAFNEKPK---KGIPMLIEKGFIASD----SDKDIAEFLFNNNNRMNKKTIGLLLCHPD 83 (230)
T ss_dssp HHHHHHHCHH---HHHHHHHHTTSSSCS----SHHHHHHHHHHTTTTSCHHHHHHHHTCGG
T ss_pred HHHHHhcCHH---HHHHHHHHCCCcCCC----CHHHHHHHHHHcCcccCHHHHHHHHcCcc
Confidence 3444444442 223456777766642 24899999998877789999999998543
No 481
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=37.84 E-value=56 Score=22.90 Aligned_cols=28 Identities=7% Similarity=0.014 Sum_probs=24.3
Q ss_pred cCcchhhhhhccccchhhHHHHHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFNLVLN 87 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~~Vl~ 87 (91)
.+.+...++...+.|++||+|.....-+
T Consensus 165 ~~~s~~eLA~~lglsksTv~r~L~~Le~ 192 (244)
T 2wte_A 165 KGTGITELAKMLDKSEKTLINKIAELKK 192 (244)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4689999999999999999999886543
No 482
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=37.57 E-value=61 Score=21.25 Aligned_cols=25 Identities=8% Similarity=0.032 Sum_probs=21.6
Q ss_pred chhhhhhccccc-hhhHHHHHHHHHH
Q 036324 63 KSRTIHSRFLRS-RETISRYFNLVLN 87 (91)
Q Consensus 63 ~~r~i~~~F~~S-~eTisr~f~~Vl~ 87 (91)
+.++++..++.| ..||+++.....+
T Consensus 27 s~~elA~~lgiss~~tv~~~~~~l~~ 52 (202)
T 1jhf_A 27 TRAEIAQRLGFRSPNAAEEHLKALAR 52 (202)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 899999999998 9999999876443
No 483
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=37.28 E-value=21 Score=22.22 Aligned_cols=28 Identities=14% Similarity=0.074 Sum_probs=23.8
Q ss_pred HHhhcCcchhhhhhccccchhhHHHHHH
Q 036324 56 HILAHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 56 ~i~~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
+.-..|.+..+++..-+.|..|||++-+
T Consensus 48 ~R~~~glTQ~eLA~~lGis~~~Is~iE~ 75 (120)
T 2o38_A 48 VIDRARLSQAAAAARLGINQPKVSALRN 75 (120)
T ss_dssp HHHHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 3456788999999999999999999764
No 484
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=37.01 E-value=24 Score=24.49 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=18.0
Q ss_pred chhhhhhccccchhhHHHHHHHH
Q 036324 63 KSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 63 ~~r~i~~~F~~S~eTisr~f~~V 85 (91)
+-+.++..|+.|+.||-+.+.+.
T Consensus 38 se~~La~~~~vSr~tvr~Al~~L 60 (248)
T 3f8m_A 38 AEREIAEQFEVARETVRQALREL 60 (248)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHH
Confidence 44556789999999998877654
No 485
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=36.58 E-value=58 Score=23.54 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=25.6
Q ss_pred HhhcCcchhhhhhccccchhhHHHHHHHH
Q 036324 57 ILAHHVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 57 i~~~~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
....+.+-..++..++.|..|++|.|++.
T Consensus 317 ~~~~~~~~~~~a~~~~~s~~~l~r~f~~~ 345 (412)
T 4fe7_A 317 HACKGIKVDQVLDAVGISRSNLEKRFKEE 345 (412)
T ss_dssp HGGGTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hccCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34567899999999999999999999987
No 486
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=36.17 E-value=7.5 Score=26.68 Aligned_cols=35 Identities=11% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
++-.|+ .++...++..++++.+.|++|||+.+.+.
T Consensus 5 ~L~~F~-~va~~gs~s~AA~~L~isq~avS~~I~~L 39 (312)
T 2h9b_A 5 HLRYFV-AVVEEQSFTKAADKLCIAQPPLSRQIQNL 39 (312)
T ss_dssp ------------------------------------
T ss_pred HHHHHH-HHHHhCCHHHHHHHhcCCccHHHHHHHHH
Confidence 344444 45566699999999999999999998764
No 487
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=36.01 E-value=71 Score=20.47 Aligned_cols=21 Identities=10% Similarity=0.240 Sum_probs=18.7
Q ss_pred chhhhhhccccchhhHHHHHH
Q 036324 63 KSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 63 ~~r~i~~~F~~S~eTisr~f~ 83 (91)
+.++++...|.|..||+++.+
T Consensus 22 tq~elA~~~Gis~~~i~~~e~ 42 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYT 42 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHH
T ss_pred CHHHHHHHhCcCHHHHHHHHh
Confidence 888999999999999999864
No 488
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=35.89 E-value=22 Score=24.37 Aligned_cols=24 Identities=21% Similarity=0.141 Sum_probs=21.8
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++.+.+.|...=|.|+.|+++||.
T Consensus 60 ~~~S~~~IA~~AGVs~~tlY~hF~ 83 (273)
T 3c07_A 60 DRTTMRAIAQEAGVSVGNAYYYFA 83 (273)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHCS
T ss_pred cccCHHHHHHHHCCCHHHHHHHcC
Confidence 558999999999999999999984
No 489
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=35.19 E-value=8 Score=26.82 Aligned_cols=35 Identities=11% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHH
Q 036324 50 QLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 50 ~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
++-.|+ .++...++..++...+.|++|||+.+.+.
T Consensus 5 ~L~~F~-~vae~gS~s~AA~~L~isq~avS~~I~~L 39 (313)
T 2h98_A 5 HLRYFV-TVVEEQSISKAAEKLCIAQPPLSRQIQKL 39 (313)
T ss_dssp ------------------------------------
T ss_pred HHHHHH-HHHHhCCHHHHHHHhCCCccHHHHHHHHH
Confidence 344444 45566799999999999999999998764
No 490
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=35.18 E-value=59 Score=19.02 Aligned_cols=24 Identities=4% Similarity=-0.054 Sum_probs=19.9
Q ss_pred CcchhhhhhccccchhhHHHHHHH
Q 036324 61 HVKSRTIHSRFLRSRETISRYFNL 84 (91)
Q Consensus 61 ~~~~r~i~~~F~~S~eTisr~f~~ 84 (91)
+.....++...|.|+.|++|+.++
T Consensus 64 ~gn~~~aA~~LGIsr~tL~rklkk 87 (91)
T 1ntc_A 64 QGHKQEAARLLGWGAATLTAKLKE 87 (91)
T ss_dssp TTCTTHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 445568899999999999999875
No 491
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=35.11 E-value=26 Score=21.29 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRY 81 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~ 81 (91)
+.-+..|-.++. ..++.+++.-|.+.+||||.
T Consensus 13 ~ies~iL~~La~-~gQ~~vAe~~GvdeStISR~ 44 (83)
T 1zs4_A 13 RIESALLNKIAM-LGTEKTAEAVGVDKSQISRW 44 (83)
T ss_dssp HHHHHHHHHHHH-HCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHH-HhhHHHHHHhCCCHHHHhhh
Confidence 444455555554 67899999999999999993
No 492
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=34.92 E-value=82 Score=19.59 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=19.4
Q ss_pred Ccchhhhhhcc-----ccchhhHHHHHHHHHHH
Q 036324 61 HVKSRTIHSRF-----LRSRETISRYFNLVLNA 88 (91)
Q Consensus 61 ~~~~r~i~~~F-----~~S~eTisr~f~~Vl~a 88 (91)
..+-.+|.... ..|..||+|..+...++
T Consensus 34 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~ 66 (136)
T 1mzb_A 34 HMSAEDVYKALMEAGEDVGLATVYRVLTQFEAA 66 (136)
T ss_dssp SBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHC
Confidence 34555555555 68999999998876543
No 493
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=34.79 E-value=43 Score=23.29 Aligned_cols=39 Identities=10% Similarity=0.217 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHH
Q 036324 47 IEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 47 veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
.+|+-.-.+|.+....+.++++...+.|..||+..+...
T Consensus 16 s~EdYLk~I~~L~~~V~~~~LA~~LgvS~~SV~~~lkkL 54 (200)
T 2p8t_A 16 TVEDVLAVIFLLKEPLGRKQISERLELGEGSVRTLLRKL 54 (200)
T ss_dssp CHHHHHHHHHHTTSCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCccHHHHHHHhCCCHHHHHHHHHHH
Confidence 456666677888888999999999999999999877653
No 494
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=34.43 E-value=16 Score=24.36 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=21.9
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++.+.++|+..=|.|..|+++||.
T Consensus 62 ~~~t~~~IA~~aGvs~~tlY~~F~ 85 (255)
T 3g1o_A 62 ADISVDDLAKGAGISRPTFYFYFP 85 (255)
T ss_dssp GGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred ccCcHHHHHHHhCCCHHHHHHHcC
Confidence 358999999999999999999985
No 495
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=34.31 E-value=57 Score=18.05 Aligned_cols=32 Identities=19% Similarity=0.001 Sum_probs=19.7
Q ss_pred HHHHHHHhhcCcchhhhhhccccchhhHHHHH
Q 036324 51 LCMFLHILAHHVKSRTIHSRFLRSRETISRYF 82 (91)
Q Consensus 51 vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f 82 (91)
++--|-..-...+..+++..-|.|.+||+++-
T Consensus 17 ~g~~l~~~R~~~sq~~lA~~~gis~~~is~~E 48 (86)
T 2ofy_A 17 LGELLRSARGDMSMVTVAFDAGISVETLRKIE 48 (86)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHhCCCHHHHHHHH
Confidence 33333333333366777777788888888764
No 496
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=33.81 E-value=8.7 Score=29.02 Aligned_cols=44 Identities=18% Similarity=0.186 Sum_probs=0.0
Q ss_pred CCCccHHHHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHH
Q 036324 42 DGTVSIEEQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 42 s~~v~veE~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
++.+..-.|+||||-.--.+.++.+|+..|+|...||..-.+.|
T Consensus 368 ~~~~~~~r~i~~yl~r~l~~~s~~~IG~~~~rdhstv~~a~~~i 411 (440)
T 2z4s_A 368 NVKALTARRIGMYVAKNYLKSSLRTIAEKFNRSHPVVVDSVKKV 411 (440)
T ss_dssp --------------------------------------------
T ss_pred CcccchHHHHHHHHHHHHhCCCHHHHHHHhCCChhHHHHHHHHH
Confidence 45677888999999888889999999999999999997655544
No 497
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=32.76 E-value=20 Score=24.02 Aligned_cols=25 Identities=8% Similarity=0.220 Sum_probs=21.5
Q ss_pred hcCcchhhhhhccccchhhHHHHHH
Q 036324 59 AHHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 59 ~~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
..|.+.++++...+.|..||+++.+
T Consensus 28 ~~g~t~~~lA~~~gis~~~i~~~~~ 52 (236)
T 3bdn_A 28 ELGLSQESVADKMGMGQSGVGALFN 52 (236)
T ss_dssp TTTCCSHHHHHHHTSCHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4567899999999999999999864
No 498
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=32.61 E-value=37 Score=23.81 Aligned_cols=37 Identities=11% Similarity=0.169 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcC-cchhhhhhccccchhhHHHHHHHHH
Q 036324 50 QLCMFLHILAHH-VKSRTIHSRFLRSRETISRYFNLVL 86 (91)
Q Consensus 50 ~vamFL~i~~~~-~~~r~i~~~F~~S~eTisr~f~~Vl 86 (91)
+-++-+|.+.++ +++..++++.+-|.+||+-+..+.-
T Consensus 166 ~~~~l~~~l~~~~~t~~~la~~~~l~~~~V~~~l~~L~ 203 (232)
T 2qlz_A 166 QLAILHYLLLNGRATVEELSDRLNLKEREVREKISEMA 203 (232)
T ss_dssp HHHHHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCHHHHHHHhCcCHHHHHHHHHHHH
Confidence 777778888855 8889999999999999999887643
No 499
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=32.48 E-value=18 Score=23.78 Aligned_cols=24 Identities=29% Similarity=0.402 Sum_probs=21.4
Q ss_pred cCcchhhhhhccccchhhHHHHHH
Q 036324 60 HHVKSRTIHSRFLRSRETISRYFN 83 (91)
Q Consensus 60 ~~~~~r~i~~~F~~S~eTisr~f~ 83 (91)
++.+.+.|...=|.|..|+++||.
T Consensus 26 ~~~tv~~Ia~~agvs~~t~y~~F~ 49 (213)
T 3ni7_A 26 EAVRLYDIAARLAVSLDEIRLYFR 49 (213)
T ss_dssp TTCCHHHHHHHTTSCHHHHHHHCS
T ss_pred cccCHHHHHHHhCCCHHHHHHHCC
Confidence 458889999999999999999994
No 500
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=32.14 E-value=9.6 Score=26.24 Aligned_cols=36 Identities=11% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCcchhhhhhccccchhhHHHHHHHH
Q 036324 49 EQLCMFLHILAHHVKSRTIHSRFLRSRETISRYFNLV 85 (91)
Q Consensus 49 E~vamFL~i~~~~~~~r~i~~~F~~S~eTisr~f~~V 85 (91)
+++-.|+-+ +...++..++...+.|++|||+.+.+.
T Consensus 17 ~~L~~f~~v-~~~gs~t~AA~~L~isq~avS~~I~~L 52 (315)
T 1uth_A 17 NLLVVFNQL-LLDRSVSTAGEKLGLTQPAVSNSLKRL 52 (315)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHH-HHcCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 456666644 455699999999999999999998764
Done!