BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>036326
MNYVSIETEEASLLDNNGEISQSQIDPNLFKATAAGNSEPFKDMAREICPSLLLQVNAKG
DSRSLLNATKFGHCDIASVLIERAKLVEHEDEELESGVGASRQTIRMTNQVKHTALHQAV
FHITVDVVKILTREDPDYPYSANNYSKTPLCMAAEYKDARVVEAIISRNPECYELVDNWG
WNFLHYAVFSFEVEELRNLVDNMLASSLMNEGDAKGKSNVHFFAA

High Scoring Gene Products

Symbol, full name Information P value
AT1G03670 protein from Arabidopsis thaliana 8.1e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  036326
        (225 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2020833 - symbol:AT1G03670 "AT1G03670" species...    94  8.1e-05   2


>TAIR|locus:2020833 [details] [associations]
            symbol:AT1G03670 "AT1G03670" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR002110 PROSITE:PS50088 SMART:SM00248
            EMBL:CP002684 Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796
            SUPFAM:SSF48403 PROSITE:PS50297 InterPro:IPR027001
            PANTHER:PTHR24177 InterPro:IPR027002 InterPro:IPR026961
            PANTHER:PTHR24177:SF1 Pfam:PF13962 IPI:IPI01019841
            RefSeq:NP_171863.1 UniGene:At.51471 ProteinModelPortal:F4I2G1
            SMR:F4I2G1 EnsemblPlants:AT1G03670.1 GeneID:839438
            KEGG:ath:AT1G03670 OMA:ISMEQAT Uniprot:F4I2G1
        Length = 616

 Score = 94 (38.1 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
 Identities = 22/82 (26%), Positives = 42/82 (51%)

Query:   140 YSANNYSKTPLCMAAEYKDARVVEAIISRNPECYELVDNWGWNFLHYAVFSFEVEELRNL 199
             Y A++   TP+ MAA+    R+++  +   P+  EL++N   N  H A  + + + ++ L
Sbjct:   281 YVADDDGFTPIHMAAKEGHVRIIKEFLKHCPDSRELLNNQCQNIFHVAAIAGKSKVVKYL 340

Query:   200 VDNMLASSLMNEGDAKGKSNVH 221
             +       +MNE D  G + +H
Sbjct:   341 LKLDEGKRMMNEQDINGNTPLH 362

 Score = 70 (29.7 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
 Identities = 29/106 (27%), Positives = 47/106 (44%)

Query:    50 PSLLLQVNAKGDSRSLLNATKFGHCDIASVLIERAKLVEHEDEELESGVGASRQTIRMTN 109
             P+LL  VN  G++ +L  A + G  +I  +L+   + +  E    ++ + A  +      
Sbjct:    96 PNLLQNVNLMGET-TLHVAARAGSLNIVEILV---RFIT-ESSSYDAFIAAKSKN----- 145

Query:   110 QVKHTALHQAVFHITVDVVKILTREDPDYPYSANNYSKTPLCMAAE 155
                 TALH A+    V+V   L     D  +  NN   +PL MA E
Sbjct:   146 --GDTALHAALKGKHVEVAFCLVSVKHDVSFDKNNDEASPLYMAVE 189


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.130   0.373    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      225       225   0.00077  113 3  11 22  0.42    33
                                                     32  0.41    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  178 KB (2104 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.42u 0.12s 20.54t   Elapsed:  00:00:01
  Total cpu time:  20.42u 0.12s 20.54t   Elapsed:  00:00:01
  Start:  Sat May 11 10:36:14 2013   End:  Sat May 11 10:36:15 2013

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