BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036326
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 13/125 (10%)
Query: 74 CDIASVLIERAKLVEHEDEELESGVGASRQTIRMTNQVKHTALHQAVFHITVDVVKILTR 133
D+ L+E A+ + ++ + GA + T+ + HT LH A +++V++L +
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD---VNATDWLGHTPLHLAAKTGHLEIVEVLLK 68
Query: 134 EDPDYPYSANNYSKTPLCMAAEYKDARVVEAIISR----NPECYELVDNWGWNFLHYAVF 189
D + +NY TPL +AA+ +VE ++ N + YE G+ LH A +
Sbjct: 69 YGADVN-AWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYE-----GFTPLHLAAY 122
Query: 190 SFEVE 194
+E
Sbjct: 123 DGHLE 127
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 92/225 (40%), Gaps = 50/225 (22%)
Query: 13 LLDNNGEISQSQIDPNLFKATAAGNSEPFKDMAREICPSLLLQVNAKGDSRSLLN----- 67
LL+NN +PNL AT AG++ P ARE +L + K S++ +
Sbjct: 99 LLENNA-------NPNL--ATTAGHT-PLHIAAREGHVETVLALLEKEASQACMTKKGFT 148
Query: 68 ----ATKFGHCDIASVLIERAKLVEHEDEELESGVGASRQTIRMTNQVKHTALHQAVFHI 123
A K+G +A +L+ER H + ++G+ T LH AV H
Sbjct: 149 PLHVAAKYGKVRVAELLLERD---AHPNAAGKNGL---------------TPLHVAVHHN 190
Query: 124 TVDVVKILTREDPDYPYSANNYSKTPLCMAAEYKDARVVEAII----SRNPECYELVDNW 179
+D+VK+L P+S TPL +AA+ V +++ S N E +
Sbjct: 191 NLDIVKLLLPRG-GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ----- 244
Query: 180 GWNFLHYAVFSFEVEELRNLVDNMLASSLMNEGDAKGKSNVHFFA 224
G LH A E + L+ +L G+ G + +H A
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQANGNL---GNKSGLTPLHLVA 286
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 82/200 (41%), Gaps = 26/200 (13%)
Query: 20 ISQSQIDPNLFKATAAGNSEPFKDMAREICPSLLLQVNAKG--DSRSLLNATKFGHCDIA 77
+S +++ L A AG++E K + + +VNAK D L A + GH ++
Sbjct: 42 VSNVKVETPLHMAARAGHTEVAKYLLQNKA-----KVNAKAKDDQTPLHCAARIGHTNMV 96
Query: 78 SVLIER------AKLVEHEDEELESGVGASRQTIRM---------TNQVKHTALHQAVFH 122
+L+E A H + + G + + + T LH A +
Sbjct: 97 KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY 156
Query: 123 ITVDVVKILTREDPDYPYSANNYSKTPLCMAAEYKDARVVEAIISRNPECYELVDNW-GW 181
V V ++L D +P +A TPL +A + + +V+ ++ R + W G+
Sbjct: 157 GKVRVAELLLERD-AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS--PAWNGY 213
Query: 182 NFLHYAVFSFEVEELRNLVD 201
LH A +VE R+L+
Sbjct: 214 TPLHIAAKQNQVEVARSLLQ 233
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 20/133 (15%)
Query: 62 SRSLLNATKFGHCDIASVLIERAKLVEHEDEELESGVGASRQTIRMTNQVKHTALHQAVF 121
+ LL A + G D +L+ V ED+ SG T LH A
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDD---SG---------------KTPLHLAAI 56
Query: 122 HITVDVVKILTREDPDYPYSANNYSKTPLCMAAEYKDARVVEAIISRNPECYELVDNWGW 181
+++V++L + D +A+ TPL +AA Y +VE ++ +N D +G+
Sbjct: 57 KGHLEIVEVLLKHGADVN-AADKMGDTPLHLAALYGHLEIVEVLL-KNGADVNATDTYGF 114
Query: 182 NFLHYAVFSFEVE 194
LH A + +E
Sbjct: 115 TPLHLAADAGHLE 127
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 28/153 (18%)
Query: 23 SQIDPNLFKATAAGNSEPFKDMAREICPSLLLQVNAKGDSRSL---LNATKFGHCDIASV 79
S + L +A AG + + I + VNA+ DS L A K GH +I V
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-----ILMANGADVNAEDDSGKTPLHLAAIK-GHLEIVEV 65
Query: 80 LIERAKLVEHEDEELESGVGASRQTIRMTNQVKHTALHQAVFHITVDVVKILTREDPDYP 139
L++ + +++ T LH A + +++V++L + D
Sbjct: 66 LLKHG------------------ADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVN 107
Query: 140 YSANNYSKTPLCMAAEYKDARVVEAIISRNPEC 172
+ + Y TPL +AA+ +VE ++ +
Sbjct: 108 -ATDTYGFTPLHLAADAGHLEIVEVLLKYGADV 139
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 26/152 (17%)
Query: 23 SQIDPNLFKATAAGNSEPFKDMAREICPSLLLQVNAK-GDSRS-LLNATKFGHCDIASVL 80
S++ L +A GN + KD+ VNA D R+ L +A + GH ++ +L
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLIENGA-----DVNASDSDGRTPLHHAAENGHKEVVKLL 56
Query: 81 IERAKLVEHEDEELESGVGASRQTIRMTNQVKHTALHQAVFHITVDVVKILTREDPDYPY 140
I + V +D + T LH A + +VVK+L + D
Sbjct: 57 ISKGADVNAKDSD------------------GRTPLHHAAENGHKEVVKLLISKGADV-N 97
Query: 141 SANNYSKTPLCMAAEYKDARVVEAIISRNPEC 172
+ ++ +TPL AAE VV+ +IS+ +
Sbjct: 98 AKDSDGRTPLHHAAENGHKEVVKLLISKGADV 129
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 126 DVVKILTREDPDYPYSANNYSKTPLCMAAEYKDARVVEAIISRNPECYELVDNWGWNFLH 185
D VK L D S ++ +TPL AAE VV+ +IS+ + D+ G LH
Sbjct: 18 DRVKDLIENGADVNAS-DSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLH 75
Query: 186 YAVFSFEVEELRNLVDNMLASSLMNEGDAKGKSNVHFFA 224
+A + E ++ L+ + +N D+ G++ +H A
Sbjct: 76 HAAENGHKEVVKLLISK---GADVNAKDSDGRTPLHHAA 111
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 102 RQTIRMTNQVKHTALHQAVFHITVDVVKILTREDPDYPYSANNYSKTPLCMAAEYKDARV 161
R + N HT LH AV H ++V++L D +TPL +A E + A V
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASV 207
Query: 162 VEAII 166
+E ++
Sbjct: 208 LELLL 212
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%)
Query: 102 RQTIRMTNQVKHTALHQAVFHITVDVVKILTREDPDYPYSANNYSKTPLCMAAEYKDARV 161
R + N HT LH AV H ++V++L D +TPL +A E + A V
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASV 207
Query: 162 VEAII 166
+E ++
Sbjct: 208 LELLL 212
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 114 TALHQAVFHITVDVVKILTREDPDYPYSANNYSKTPLCMAAEYKDARVVEAIISRNPECY 173
T LH A + +VVK+L + D P + ++ KTPL +AAE VV+ ++S+ +
Sbjct: 39 TPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 97
Query: 174 ELVDNWGWNFLHYAV 188
D+ G LH A
Sbjct: 98 -AKDSDGKTPLHLAA 111
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 126 DVVKILTREDPDYPYSANNYSKTPLCMAAEYKDARVVEAIISRNPECYELVDNWGWNFLH 185
D VK L D ++++ KTPL +AAE VV+ ++S+ + D+ G LH
Sbjct: 18 DRVKDLLENGADV-NASDSDGKTPLHLAAENGHKEVVKLLLSQGADPN-AKDSDGKTPLH 75
Query: 186 YAVFSFEVEELRNLVDNMLASSLMNEGDAKGKSNVHFFA 224
A + E ++ L+ + N D+ GK+ +H A
Sbjct: 76 LAAENGHKEVVKLLLSQ---GADPNAKDSDGKTPLHLAA 111
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 112 KHTALHQAVFHITVDVVKILTREDPDYPYSANNYSKTPLCMAAEYKDARVVEAIISRNPE 171
K T LH A + V +V++L + D ++ + PL A Y V E ++ ++
Sbjct: 58 KSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLL-KHGA 115
Query: 172 CYELVDNWGWNFLHYAVFSFEVEELRNLVDNMLASSLMNEGDAKGKSNV 220
C +D W + LH A VE L+ + +L+N GKS V
Sbjct: 116 CVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN---CHGKSAV 161
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 74 CDIASVLIERAKLVEHEDEELESGVGASRQTIRMTNQVKHTALHQAVFHITVDVVKILTR 133
D+ L+E A+ + ++ + + GA + + HT LH A +++V++L +
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILTANGAD---VNANDYWGHTPLHLAAMLGHLEIVEVLLK 68
Query: 134 EDPDYPYSANNYSKTPLCMAAEYKDARVVEAIISRNPEC 172
D + N +TPL +AA +VE ++ +
Sbjct: 69 NGADVNATGNT-GRTPLHLAAWADHLEIVEVLLKHGADV 106
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 126 DVVKILTREDPDYPYSANNYSKTPLCMAAEYKDARVVEAIISRNPECYELVDNWGWNFLH 185
D V+IL D +A+N TPL +AA +VE ++ + + D +G+ LH
Sbjct: 28 DEVRILMANGADVN-AADNTGTTPLHLAAYSGHLEIVEVLLKHGADV-DASDVFGYTPLH 85
Query: 186 YAVFSFEVEELRNLVDNMLASSLMNEGDAKGKSNVHFFA 224
A + +E + L+ N + +N D+ G + +H A
Sbjct: 86 LAAYWGHLEIVEVLLKN---GADVNAMDSDGMTPLHLAA 121
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 114 TALHQAVFHITVDVVKILTREDPDYPYSANNYSKTPLCMAAEYKDARVVEAIISRNPECY 173
T LH AV D+V++L R D P TP +AA ++++ +S+ +
Sbjct: 41 TPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVN 99
Query: 174 ELVDNWGWN-FLHYAVFS 190
E D +G+ F+ AV+
Sbjct: 100 E-CDFYGFTAFMEAAVYG 116
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 114 TALHQAVFHITVDVVKILTREDPDYPYSANNYSKTPLCMAAEYKDARVVEAIISRNPECY 173
T LH AV D+V++L R D P TP +AA ++++ +S+ +
Sbjct: 61 TPLHNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVN 119
Query: 174 ELVDNWGWN-FLHYAVFS 190
E D +G+ F+ AV+
Sbjct: 120 E-CDFYGFTAFMEAAVYG 136
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 74 CDIASVLIERAKLVEHEDEELESGVGASRQTIRMTNQVKHTALHQAVFHITVDVVKILTR 133
D+ L+E A+ ++ + GA + + V T LH A + +++V++L +
Sbjct: 12 SDLGKKLLEAARAGRDDEVRILMANGAD---VNAADVVGWTPLHLAAYWGHLEIVEVLLK 68
Query: 134 EDPDYPYSANNYSKTPLCMAAEYKDARVVEAIISRNPECYELVDNWGWNFLHYA 187
D + + TPL +AA + +VE ++ + DN G LH A
Sbjct: 69 NGADVN-AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDN-GITPLHLA 120
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 5/107 (4%)
Query: 118 QAVFHITVDVVKILTREDPDYPYSANNYSKTPLCMAAEYKDARVVEAIISRNPECYELVD 177
+A + D VK L D P ++++ +TPL AAE +V+ ++S+ + D
Sbjct: 10 EAAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSKGADP-NAKD 67
Query: 178 NWGWNFLHYAVFSFEVEELRNLVDNMLASSLMNEGDAKGKSNVHFFA 224
+ G LHYA + E ++ L+ + N D+ G++ +H+ A
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSK---GADPNAKDSDGRTPLHYAA 111
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 63/148 (42%), Gaps = 26/148 (17%)
Query: 23 SQIDPNLFKATAAGNSEPFKDMAREICPSLLLQVNAK-GDSRSLLN-ATKFGHCDIASVL 80
S++ L +A GN + KD+ NA D R+ L+ A + GH +I +L
Sbjct: 2 SELGKRLIEAAENGNKDRVKDLLENGA-----DPNASDSDGRTPLHYAAENGHKEIVKLL 56
Query: 81 IERAKLVEHEDEELESGVGASRQTIRMTNQVKHTALHQAVFHITVDVVKILTREDPDYPY 140
+ + +D + T LH A + ++VK+L + D P
Sbjct: 57 LSKGADPNAKDSD------------------GRTPLHYAAENGHKEIVKLLLSKGAD-PN 97
Query: 141 SANNYSKTPLCMAAEYKDARVVEAIISR 168
+ ++ +TPL AAE +V+ ++S+
Sbjct: 98 AKDSDGRTPLHYAAENGHKEIVKLLLSK 125
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 126 DVVKILTREDPDYPYSANNYSKTPLCMAAEYKDARVVEAIISRNPECYELVDNWGWNFLH 185
D V+IL D + ++Y +TPL MAA +VE ++ RN VD G LH
Sbjct: 16 DEVRILMANGAD-ANAYDHYGRTPLHMAAAVGHLEIVEVLL-RNGADVNAVDTNGTTPLH 73
Query: 186 YA 187
A
Sbjct: 74 LA 75
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 26/154 (16%)
Query: 47 EICPSLLLQVNAKGDSRS------LLNATKFGHCDIASVLIERAKLVEHEDEELESGVGA 100
+IC +L+Q A D+ S L+ A + H + LI+ LV+ +D E
Sbjct: 25 DIC-HMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAE------- 76
Query: 101 SRQTIRMTNQVKHTALHQAVFHITVDVVKILTREDPDYPYSANNYSKTPLCMAAEYKDAR 160
T LH A +VV+ L ++ TP+ A EYK
Sbjct: 77 -----------GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVD 125
Query: 161 VVEAIISRNPECYELVDNWGWNFLHYAVFSFEVE 194
+V+ ++S+ + + DN LH+A FS V+
Sbjct: 126 LVKLLLSKGSD-INIRDNEENICLHWAAFSGCVD 158
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 19/105 (18%)
Query: 62 SRSLLNATKFGHCDIASVLIERAKLVEHEDEELESGVGASRQTIRMTNQVKHTALHQAVF 121
+ LL AT+ G D +L+ V D+ +GV T LH A
Sbjct: 15 GKKLLEATRAGQDDEVRILMANGADVNAMDD---AGV---------------TPLHLAAK 56
Query: 122 HITVDVVKILTREDPDYPYSANNYSKTPLCMAAEYKDARVVEAII 166
+++V++L + D S +++ +TPL +AA +VE ++
Sbjct: 57 RGHLEIVEVLLKHGADVNAS-DSWGRTPLHLAATVGHLEIVEVLL 100
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 114 TALHQAVFHITVDVVKILTREDPDYPYSANNYSKTPLCMAAEYKDARVVEAIISRNPEC 172
T LH A +++V++L + D + +N TPL +AA+Y +VE ++ +
Sbjct: 82 TPLHLAAATGHLEIVEVLLKHGADVN-AYDNDGHTPLHLAAKYGHLEIVEVLLKHGADV 139
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 92 EELESGVGASRQTIRMTNQVKHTALHQAVFHITVDVVKILTREDPDYPYS-ANNYSKTPL 150
EEL+ + A + T+Q TALH A ++V+ L + P + ++ +PL
Sbjct: 21 EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPL 78
Query: 151 CMAAEYKDARVVEAIISRNPECYELVDNWGWNFLHYA 187
+AA +V+A++ + + + N G LHYA
Sbjct: 79 HIAASAGRDEIVKALLGKGAQVNAVNQN-GCTPLHYA 114
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 92 EELESGVGASRQTIRMTNQVKHTALHQAVFHITVDVVKILTREDPDYPYS-ANNYSKTPL 150
EEL+ + A + T+Q TALH A ++V+ L + P + ++ +PL
Sbjct: 20 EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPL 77
Query: 151 CMAAEYKDARVVEAIISRNPECYELVDNWGWNFLHYA 187
+AA +V+A++ + + + N G LHYA
Sbjct: 78 HIAASAGRDEIVKALLGKGAQVNAVNQN-GCTPLHYA 113
>pdb|2XCB|A Chain A, Crystal Structure Of Pcrh In Complex With The Chaperone
Binding Region Of Popd
pdb|2XCB|B Chain B, Crystal Structure Of Pcrh In Complex With The Chaperone
Binding Region Of Popd
pdb|2XCC|A Chain A, Crystal Structure Of Pcrh From Pseudomonas Aeruginosa
pdb|2XCC|B Chain B, Crystal Structure Of Pcrh From Pseudomonas Aeruginosa
Length = 142
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 15/99 (15%)
Query: 44 MAREICPSLLLQVNAKGDSRSLLNATKFGHCDIASVLIERAKLVEHEDEELESGVGASRQ 103
M R + L Q+ A G N + G D A + + +++H D G+GA RQ
Sbjct: 9 MLRGLSEDTLEQLYALG-----FNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ 63
Query: 104 TIRMTNQVKHTALHQAVFHITVDVVKILTREDPDYPYSA 142
++ + Q + + A+ I +P +P+ A
Sbjct: 64 SLGLYEQALQSYSYGALMDIN----------EPRFPFHA 92
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 26/152 (17%)
Query: 23 SQIDPNLFKATAAGNSEPFKDMAREICPSLLLQVNAKGDSRS--LLNATKFGHCDIASVL 80
S + L +A AG + + I + VNA D S L A GH +I VL
Sbjct: 12 SDLGKKLLEAARAGQDDEVR-----ILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVL 66
Query: 81 IERAKLVEHEDEELESGVGASRQTIRMTNQVKHTALHQAVFHITVDVVKILTREDPDYPY 140
++ V D + T LH A + +++V++L + D
Sbjct: 67 LKHGADVNARDTD------------------GWTPLHLAADNGHLEIVEVLLKYGADV-N 107
Query: 141 SANNYSKTPLCMAAEYKDARVVEAIISRNPEC 172
+ + Y TPL +AA+ +VE ++ +
Sbjct: 108 AQDAYGLTPLHLAADRGHLEIVEVLLKHGADV 139
>pdb|1R8W|A Chain A, Native Structure Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R8W|B Chain B, Native Structure Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9D|A Chain A, Glycerol Bound Form Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9D|B Chain B, Glycerol Bound Form Of The B12-Independent Glycerol
Dehydratase From Clostridium Butyricum
pdb|1R9E|A Chain A, Structure Of The B12-Independent Glycerol Dehydratase With
1,2-Propanediol Bound
pdb|1R9E|B Chain B, Structure Of The B12-Independent Glycerol Dehydratase With
1,2-Propanediol Bound
Length = 787
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 20/129 (15%)
Query: 44 MAREICPSLLLQVNAKGDSRSLLNATKFGHCDIASVLIERAKLVEHEDEELESGVGASRQ 103
A+E+ + +++N R ++ FG + LI + E +D
Sbjct: 306 FAQELIDCIWIKLNDINKVRDEISTKHFGGYPMYQNLIVGGQNSEGKD------------ 353
Query: 104 TIRMTNQVKHTALHQAVFHITVD----VVKILTREDPDYPYSANNYSKTPLCMAAEYKDA 159
TN+V + AL AV H+ + V+I + ++ A ++ L + A Y D
Sbjct: 354 ---ATNKVSYMALEAAV-HVKLPQPSLSVRIWNKTPDEFLLRAAELTREGLGLPAYYNDE 409
Query: 160 RVVEAIISR 168
++ A++SR
Sbjct: 410 VIIPALVSR 418
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,218,899
Number of Sequences: 62578
Number of extensions: 229615
Number of successful extensions: 608
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 588
Number of HSP's gapped (non-prelim): 46
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)