BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036327
(525 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M21|A Chain A, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M21|B Chain B, Crystal Structure Analysis Of The Peptide Amidase Pam In
Complex With The Competitive Inhibitor Chymostatin
pdb|1M22|A Chain A, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
pdb|1M22|B Chain B, X-Ray Structure Of Native Peptide Amidase From
Stenotrophomonas Maltophilia At 1.4 A
Length = 503
Score = 278 bits (711), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 195/507 (38%), Positives = 275/507 (54%), Gaps = 40/507 (7%)
Query: 37 FSIKEATIEGIQLAFRQNQLASRQLVQFY---IGEIRRLNPVLNAVIEVNPDALYQADKA 93
F E + +Q +L S L Q Y I + R P L AVIE+NPDAL +A A
Sbjct: 6 FPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEA--A 63
Query: 94 DYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAG 153
+ +R+ + L GIP+LLKD I T+AGS AL G DA +V +LR AG
Sbjct: 64 ERDRERRDGRLRGPLHGIPLLLKDNINAA-PMATSAGSLALQG-FRPDDAYLVRRLRDAG 121
Query: 154 AIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANLVAVS 213
A+++GK +LSEWA+FR + +G+SARGGQ +NPY +S PCGSSSG A++VAANL +V+
Sbjct: 122 AVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRISHSPCGSSSGSAVAVAANLASVA 181
Query: 214 LGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVXXX 273
+GTETDGSI+CP++ N VVG+KPTVGL S G+IP+S QDT G + S ++DA
Sbjct: 182 IGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARS--VADAAAVLT 239
Query: 274 XXXXXXVDYNDPATKAASYYIPYGGYKQFXXXXXXXXXXXXIVRNPFFNFDKGSALTQAF 333
D DPAT Y Y +++ P + +
Sbjct: 240 AIAGR--DDADPATATMPGRAVY-DYTARLDPQGLRGKRIGLLQTPLLKY---RGMPPLI 293
Query: 334 NYHLQTLRQQGAVLVDYLEIANIDVILNATASGEATALVAEFKLALNAYVKELVASPVRS 393
LR+ GAV+V +E+ N A A E T L+ EFK L Y A P+RS
Sbjct: 294 EQAATELRRAGAVVVP-VELPN----QGAWAEAERTLLLYEFKAGLERYFNTHRA-PLRS 347
Query: 394 LAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAALLNLAK--LSRDGFEKAMT 451
LA++IAFN+ S +++ FGQ++ + A AT G+ + + A+ +G + A+
Sbjct: 348 LADLIAFNQAHSK-QELGLFGQELLVEADATAGLADPAYIRARSDARRLAGPEGIDAALA 406
Query: 452 VNKLDALVTPRSDIA-PV--------------LAIGGFPGINVPAGYDTEGVPFGINFGG 496
++LDALV P + +A P+ A+ G+P + VP G +G+P G+ F G
Sbjct: 407 AHQLDALVAPTTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMG-QIDGLPVGLLFMG 465
Query: 497 LRGTEPKLIEIAYGFEQATMIRKPPSF 523
+EPKLIE+AY +EQ T R+PP F
Sbjct: 466 TAWSEPKLIEMAYAYEQRTRARRPPHF 492
>pdb|3AL0|A Chain A, Crystal Structure Of The Glutamine Transamidosome From
Thermotoga Maritima In The Glutamylation State
Length = 475
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 130/493 (26%), Positives = 208/493 (42%), Gaps = 71/493 (14%)
Query: 47 IQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPDALYQADKADYERKVKAPGSLV 106
I+ + ++ +L Q + I+RL+P + A I V + E+K K
Sbjct: 11 IEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVR-------ENVSVEKKGK------ 57
Query: 107 GLRGIPVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWA 166
GIPV +KD I T + TT S L DA VV K+++AG +++GKA+L E+A
Sbjct: 58 -FWGIPVAIKDNILTLGMR-TTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFA 115
Query: 167 DFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANLVAVSLGTETDGSILCPS 226
S + F R NP+ L P GSS G A +V+A +V +LG++T GS+ P+
Sbjct: 116 MGSSTERSAFFPTR-----NPWDLERVPGGSSGGSAAAVSAGMVVAALGSDTGGSVRQPA 170
Query: 227 SSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVXXXXXXXXXVDYNDPA 286
S VVG KPT GL S G++ + D IG I + + DA + D ND
Sbjct: 171 SLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKT--VRDAAILMEIISGR--DENDAT 226
Query: 287 TKAASYYIPYGGYKQFXXXXXXXXXXXXIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAV 346
T + + + V + D +++ F L+ L + GA
Sbjct: 227 T--VNRKVDF-----LSEIEEGVSGMKFAVPEEIYEHDIEEGVSERFEEALKLLERLGA- 278
Query: 347 LVDYLEIANID---VILNATASGEATALVAEFK-LALNAYVKELVASPVRSLAEVIAFNE 402
V+ ++I +I A EA++ +A F + +KE + L E+
Sbjct: 279 KVERVKIPHIKYSVATYYVIAPAEASSNLARFDGVKYGLRIKE------KGLREMYM--- 329
Query: 403 KFSDIEKIEEFGQDIFLAAQATNGIGNTEKAALLNLAKLSRDGFEKAM--TVNKLDALVT 460
K ++ EE + I + T + A N A R + +++ DA++T
Sbjct: 330 KTRNVGFGEEVRRRIMI---GTFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILT 386
Query: 461 PRS-------------------DIAPVLA-IGGFPGINVPAGYDTEGVPFGINFGGLRGT 500
P S DI + A + G P I+VP G+ + +P G+ G R
Sbjct: 387 PTSPVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGF-SNNLPVGVQVIGRRFA 445
Query: 501 EPKLIEIAYGFEQ 513
+ K+ IA E+
Sbjct: 446 DGKVFRIARAIEK 458
>pdb|2GI3|A Chain A, Crystal Structure Of Glutamyl-Trna(Gln) Amidotransferase
Subunit A (Tm1272) From Thermotoga Maritima At 1.80 A
Resolution
Length = 476
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 108/217 (49%), Gaps = 20/217 (9%)
Query: 47 IQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPDALYQADKADYERKVKAPGSLV 106
I+ + ++ +L Q + I+RL+P + A I V + E+K K
Sbjct: 12 IEECLKLSEEEREKLPQLSLETIKRLDPHVKAFISVR-------ENVSVEKKGK------ 58
Query: 107 GLRGIPVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWA 166
GIPV +KD I T + TT S L DA VV K ++AG +++GKA+L E+A
Sbjct: 59 -FWGIPVAIKDNILTLGXR-TTCASRILENYESVFDATVVKKXKEAGFVVVGKANLDEFA 116
Query: 167 DFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANLVAVSLGTETDGSILCPS 226
S + F R NP+ L P GSS G A +V+A V +LG++T GS+ P+
Sbjct: 117 XGSSTERSAFFPTR-----NPWDLERVPGGSSGGSAAAVSAGXVVAALGSDTGGSVRQPA 171
Query: 227 SSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSL 263
S VVG KPT GL S G++ + D IG I ++
Sbjct: 172 SLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTV 208
>pdb|3H0L|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0L|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0M|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|D Chain D, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|G Chain G, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|J Chain J, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|M Chain M, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|P Chain P, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|S Chain S, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
pdb|3H0R|V Chain V, Structure Of Trna-Dependent Amidotransferase Gatcab From
Aquifex Aeolicus
Length = 478
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 83/150 (55%), Gaps = 6/150 (4%)
Query: 108 LRGIPVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWAD 167
L GIP+ +KD I + + TT S L V DA V+ +L+KAGA+I+GK +L E+A
Sbjct: 64 LFGIPIAVKDNILV-EGEKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEFAM 122
Query: 168 FRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSS 227
S + F KNP+ L P GSS G A SVA VSLG++T GSI P+S
Sbjct: 123 GSSTEYSAFFPT-----KNPWDLERVPGGSSGGSAASVAVLSAPVSLGSDTGGSIRQPAS 177
Query: 228 SNSVVGIKPTVGLTSLAGVIPVSPRQDTIG 257
V+GIKPT G S G++ + D IG
Sbjct: 178 FCGVIGIKPTYGRVSRYGLVAFASSLDQIG 207
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 463 SDIAPVLA-IGGFPGINVPAGYDTEGVPFGINFGGLRGTEPKLIEIAYGFEQ 513
SDI V A + G P I++P + +G+P G G E L++I+Y +EQ
Sbjct: 417 SDILTVPANLAGLPAISIPIAWK-DGLPVGGQLIGKHWDETTLLQISYLWEQ 467
>pdb|2DC0|A Chain A, Crystal Structure Of Amidase
pdb|2DC0|B Chain B, Crystal Structure Of Amidase
Length = 434
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 83/164 (50%), Gaps = 23/164 (14%)
Query: 108 LRGIPVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWAD 167
L G+P+ +KD+ K T AG+ A L + +A V +LR+AGA++ K + E A
Sbjct: 65 LHGLPLTVKDLFPVKG-MPTRAGTKAPL-PPLPEEARAVRRLREAGALLFAKTNXHEIA- 121
Query: 168 FRSLQAPNGFSARGGQGKNPYVL----SADPC----GSSSGPAISVAANLVAVSLGTETD 219
G G+NP+ + DP GSS G A++VA + SLGT+T
Sbjct: 122 ------------LGITGENPWTGPVRNAVDPSRQAGGSSGGSAVAVALGIGLASLGTDTG 169
Query: 220 GSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSL 263
GSI P+ N VVG KP+ G SL G +P+S D G + S+
Sbjct: 170 GSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSV 213
>pdb|2DF4|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Mn2+
pdb|2DQN|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Asn
pdb|2G5H|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
pdb|2G5I|A Chain A, Structure Of Trna-dependent Amidotransferase Gatcab
Complexed With Adp-alf4
pdb|3IP4|A Chain A, The High Resolution Structure Of Gatcab
pdb|2F2A|A Chain A, Structure Of Trna-Dependent Amidotransferase Gatcab
Complexed With Gln
Length = 485
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 119/223 (53%), Gaps = 11/223 (4%)
Query: 37 FSIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADY 95
SI+ ++E + + ++ +V+ I +P + + + ++ + A+ +A + D
Sbjct: 1 MSIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELD- 59
Query: 96 ERKVKAPGSLVG-LRGIPVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGA 154
+++A + G L GIP+ +KD I T + TT S L G V ++ V+ KL K A
Sbjct: 60 --ELQAKDQMDGKLFGIPMGIKDNIITNGLE-TTCASKMLEGFVPIYESTVMEKLHKENA 116
Query: 155 IIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANLVAVSL 214
+++GK ++ E+A S + ++ + NP+ A P GSS G A +VAA LV +SL
Sbjct: 117 VLIGKLNMDEFAMGGSTE-----TSYFKKTVNPFDHKAVPGGSSGGSAAAVAAGLVPLSL 171
Query: 215 GTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIG 257
G++T GSI P++ VVG+KPT G S G++ + D IG
Sbjct: 172 GSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIG 214
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 12/86 (13%)
Query: 427 IGNTEKAALLNLAKLSRDGFEKAMTVNKLDALVTPRSDIAPVLAIGGFPGINVPAGYDTE 486
+G T NL + D +T+ D L TP + + G PGI+VP G +
Sbjct: 400 VGPTAPTTAFNLGEEIDD----PLTMYANDLLTTP-------VNLAGLPGISVPCG-QSN 447
Query: 487 GVPFGINFGGLRGTEPKLIEIAYGFE 512
G P G+ F G E L +AY +E
Sbjct: 448 GRPIGLQFIGKPFDEKTLYRVAYQYE 473
>pdb|3KFU|E Chain E, Crystal Structure Of The Transamidosome
pdb|3KFU|H Chain H, Crystal Structure Of The Transamidosome
Length = 471
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 68/211 (32%), Positives = 112/211 (53%), Gaps = 15/211 (7%)
Query: 53 QNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIP 112
+ +++ ++ Q Y+ ++ L+P L A + +N L +A+ D PG + L G+
Sbjct: 12 RGEVSPLEVAQAYLKRVQELDPGLGAFLSLNERLLEEAEAVD-------PG--LPLAGLV 62
Query: 113 VLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQ 172
V +KD I T+ + TTAGS L V +A V +L+ GA+++GK +L E+ S +
Sbjct: 63 VAVKDNIATRGLR-TTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTE 121
Query: 173 APNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVV 232
F KNP+ P GSS G A ++AA+L ++LG++T GS+ P++ V
Sbjct: 122 HSAFFPT-----KNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVY 176
Query: 233 GIKPTVGLTSLAGVIPVSPRQDTIGDICLSL 263
G+KPT G S G+I + D IG + S+
Sbjct: 177 GLKPTYGRVSRFGLIAYASSLDQIGPMARSV 207
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 454 KLDALVTPRSDIAPVLA-IGGFPGINVPAGYDTEGVPFGINFGGLRGTEPKLIEIAYGFE 512
+ D L R D+ V A + G P ++ PAG++ +P G+ G + +L+ A FE
Sbjct: 397 RRDPLAMYREDLYTVGANLTGLPALSFPAGFEGH-LPVGLQLLAPWGEDERLLRAALAFE 455
Query: 513 QAT 515
+AT
Sbjct: 456 EAT 458
>pdb|1OBL|A Chain A, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1OBL|B Chain B, Crystal Structure Of The S133a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 90/182 (49%), Gaps = 17/182 (9%)
Query: 77 NAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTAGSFALLG 136
+A IE ++ + D + +A G L RGI V +KD+I T + T GS G
Sbjct: 26 HAAIEAREKEVHAFVRHDKSARAQASGPL---RGIAVGIKDIIDTAN-MPTEMGSEIYRG 81
Query: 137 SVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGK-NPYVLSADPC 195
DA VVM L++AGA I+GK + + F++R NP+ P
Sbjct: 82 WQPRSDAPVVMMLKRAGATIIGKTTTT------------AFASRDPTATLNPHNTGHSPG 129
Query: 196 GSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDT 255
GSS+G A +V A ++ ++LGT+T GS++ P++ IKP+ + GV S DT
Sbjct: 130 GSSAGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDT 189
Query: 256 IG 257
+G
Sbjct: 190 VG 191
>pdb|1O9O|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9O|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonamate From Bradyrhizobium Japonicum
pdb|1O9P|A Chain A, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
pdb|1O9P|B Chain B, Crystal Structure Of The S131a Mutant Of Malonamidase E2
Complexed With Malonate From Bradyrhizobium Japonicum
Length = 414
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 90/182 (49%), Gaps = 17/182 (9%)
Query: 77 NAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTAGSFALLG 136
+A IE ++ + D + +A G L RGI V +KD+I T + T GS G
Sbjct: 26 HAAIEAREKEVHAFVRHDKSARAQASGPL---RGIAVGIKDIIDTAN-MPTEMGSEIYRG 81
Query: 137 SVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGK-NPYVLSADPC 195
DA VVM L++AGA I+GK + + F++R NP+ P
Sbjct: 82 WQPRSDAPVVMMLKRAGATIIGKTTTT------------AFASRDPTATLNPHNTGHSPG 129
Query: 196 GSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDT 255
G+SSG A +V A ++ ++LGT+T GS++ P++ IKP+ + GV S DT
Sbjct: 130 GASSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDT 189
Query: 256 IG 257
+G
Sbjct: 190 VG 191
>pdb|4GYR|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYR|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase Apo
pdb|4GYS|A Chain A, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
pdb|4GYS|B Chain B, Granulibacter Bethesdensis Allophanate Hydrolase
Co-crystallized With Malonate
Length = 621
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 73/224 (32%), Positives = 110/224 (49%), Gaps = 21/224 (9%)
Query: 43 TIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPDALYQADKADYERKVKAP 102
T+EGIQ Q + + + Y R + + + + L +A D +P
Sbjct: 35 TLEGIQAFLAQGGTIEQVVTEAYDRITRYGDKAVWIALRPREEVLAEARALD-----ASP 89
Query: 103 GSLVGLRGIPVLLKDMIGTKDKQNTTAG-SFALLGSVVARDAGVVMKLRKAGAIIMGKAS 161
+ L G+P +KD I + A +F RDA VV +LR AGAI++GK +
Sbjct: 90 ATGKPLYGVPFAVKDNIDVAGLPCSAACPAFTYEPD---RDATVVARLRAAGAIVLGKTN 146
Query: 162 LSEWAD-FRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANLVAVSLGTETDG 220
L ++A ++P F A Y+ SSSG A++VAA LVA SLGT+T G
Sbjct: 147 LDQFATGLVGTRSP--FGAPRCVFDQDYISGG----SSSGSAVAVAAGLVAFSLGTDTAG 200
Query: 221 SILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLF 264
S P++ N++VG+KPT GL S +GV+P D C+++F
Sbjct: 201 SGRVPAAFNNLVGVKPTKGLLSTSGVVPACRSLD-----CVTVF 239
>pdb|1OBI|A Chain A, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBI|B Chain B, Crystal Structure Of The G130a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 17/182 (9%)
Query: 77 NAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTAGSFALLG 136
+A IE ++ + D + +A G L RGI V +KD+I T + T GS G
Sbjct: 26 HAAIEAREKEVHAFVRHDKSARAQASGPL---RGIAVGIKDIIDTAN-MPTEMGSEIYRG 81
Query: 137 SVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGK-NPYVLSADPC 195
DA VVM L++AGA I+GK + + F++R NP+ P
Sbjct: 82 WQPRSDAPVVMMLKRAGATIIGKTTTT------------AFASRDPTATLNPHNTGHSPG 129
Query: 196 GSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDT 255
SSSG A +V A ++ ++LGT+T GS++ P++ IKP+ + GV S DT
Sbjct: 130 ASSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDT 189
Query: 256 IG 257
+G
Sbjct: 190 VG 191
>pdb|1OCK|A Chain A, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCK|B Chain B, The Crystal Structure Of Malonamidase E2 From
Bradyrhizobium Japonicum
pdb|1OCL|A Chain A, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCL|B Chain B, The Crystal Structure Of Malonamidase E2 Complexed With
Malonate From Bradyrhizobium Japonicum
pdb|1OCM|A Chain A, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
pdb|1OCM|B Chain B, The Crystal Structure Of Malonamidase E2 Covalently
Complexed With Pyrophosphate From Bradyrhizobium
Japonicum
Length = 412
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 90/182 (49%), Gaps = 17/182 (9%)
Query: 77 NAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTAGSFALLG 136
+A IE ++ + D + +A G L RGI V +KD+I T + T GS G
Sbjct: 26 HAAIEAREKEVHAFVRHDKSARAQASGPL---RGIAVGIKDIIDTAN-MPTEMGSEIYRG 81
Query: 137 SVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGK-NPYVLSADPC 195
DA VVM L++AGA I+GK + + F++R NP+ P
Sbjct: 82 WQPRSDAPVVMMLKRAGATIIGKTTTT------------AFASRDPTATLNPHNTGHSPG 129
Query: 196 GSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDT 255
GSSSG A +V A ++ ++LGT+T GS++ P++ IKP+ + GV S DT
Sbjct: 130 GSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDT 189
Query: 256 IG 257
+G
Sbjct: 190 VG 191
>pdb|1OBK|A Chain A, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBK|B Chain B, Crystal Structure Of The R158q Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 90/182 (49%), Gaps = 17/182 (9%)
Query: 77 NAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTAGSFALLG 136
+A IE ++ + D + +A G L RGI V +KD+I T + T GS G
Sbjct: 26 HAAIEAREKEVHAFVRHDKSARAQASGPL---RGIAVGIKDIIDTAN-MPTEMGSEIYRG 81
Query: 137 SVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGK-NPYVLSADPC 195
DA VVM L++AGA I+GK + + F++R NP+ P
Sbjct: 82 WQPRSDAPVVMMLKRAGATIIGKTTTT------------AFASRDPTATLNPHNTGHSPG 129
Query: 196 GSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDT 255
GSSSG A +V A ++ ++LGT+T GS++ P++ IKP+ + GV S DT
Sbjct: 130 GSSSGSAAAVGAGMIPLALGTQTGGSVIQPAAYCGTAAIKPSFRMLPTVGVKCYSWALDT 189
Query: 256 IG 257
+G
Sbjct: 190 VG 191
>pdb|1O9Q|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9Q|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|A Chain A, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OCH|B Chain B, Crystal Structure Of The S155c Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 17/182 (9%)
Query: 77 NAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTAGSFALLG 136
+A IE ++ + D + +A G L RGI V +KD+I T + T GS G
Sbjct: 26 HAAIEAREKEVHAFVRHDKSARAQASGPL---RGIAVGIKDIIDTAN-MPTEMGSEIYRG 81
Query: 137 SVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGK-NPYVLSADPC 195
DA VVM L++AGA I+GK + + F++R NP+ P
Sbjct: 82 WQPRSDAPVVMMLKRAGATIIGKTTTT------------AFASRDPTATLNPHNTGHSPG 129
Query: 196 GSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDT 255
GSSSG A +V A ++ ++LGT+T G ++ P++ IKP+ + GV S DT
Sbjct: 130 GSSSGSAAAVGAGMIPLALGTQTGGXVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDT 189
Query: 256 IG 257
+G
Sbjct: 190 VG 191
>pdb|1OBJ|A Chain A, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1OBJ|B Chain B, Crystal Structure Of The T150a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 17/182 (9%)
Query: 77 NAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTAGSFALLG 136
+A IE ++ + D + +A G L RGI V +KD+I T + T GS G
Sbjct: 26 HAAIEAREKEVHAFVRHDKSARAQASGPL---RGIAVGIKDIIDTAN-MPTEMGSEIYRG 81
Query: 137 SVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGK-NPYVLSADPC 195
DA VVM L++AGA I+GK + + F++R NP+ P
Sbjct: 82 WQPRSDAPVVMMLKRAGATIIGKTTTT------------AFASRDPTATLNPHNTGHSPG 129
Query: 196 GSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDT 255
GSSSG A +V A ++ ++LG +T GS++ P++ IKP+ + GV S DT
Sbjct: 130 GSSSGSAAAVGAGMIPLALGAQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDT 189
Query: 256 IG 257
+G
Sbjct: 190 VG 191
>pdb|3A2P|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Length = 493
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 95/193 (49%), Gaps = 17/193 (8%)
Query: 52 RQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGI 111
R +++ +L++ I ++ +NP +NAVI + +KA E ++ A G G +
Sbjct: 18 RSGEISRTELLEATIAHVQAVNPEINAVI------IPLFEKARRESEL-ASGPFAG---V 67
Query: 112 PVLLKDM--IGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFR 169
P LLKD+ + D ++ G DA V ++R AG +++GK + E +
Sbjct: 68 PYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQV 127
Query: 170 SLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSN 229
+ + P + G +NP+ L GSS G +VAA L V+ G + GS+ P+S
Sbjct: 128 TTE-PEAW----GATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGSVRIPASVC 182
Query: 230 SVVGIKPTVGLTS 242
VVG+KPT G S
Sbjct: 183 GVVGLKPTRGRIS 195
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 11/122 (9%)
Query: 407 IEKIEEFGQDIFLAAQATNGIGNTEKAALLNLAK-LSRDGFEKAMTVNKLDALVTPRSDI 465
+E+ E G D+ + T T + L LAK +G + A L L
Sbjct: 373 VERWWEAGWDLLILPTVTR---QTPEIGELMLAKGTDLEGRQSAFISGSLQMLA-----F 424
Query: 466 APVLAIGGFPGINVPAGYDTEGVPFGINFGGLRGTEPKLIEIAYGFEQA--TMIRKPPSF 523
+ G P I++P G ++G+P G+ G E L+++A E A + R+P
Sbjct: 425 TVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLEGALPWVARRPQLL 484
Query: 524 KP 525
P
Sbjct: 485 NP 486
>pdb|1O9N|A Chain A, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
pdb|1O9N|B Chain B, Crystal Structure Of The K62a Mutant Of Malonamidase E2
From Bradyrhizobium Japonicum
Length = 414
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 17/182 (9%)
Query: 77 NAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTAGSFALLG 136
+A IE ++ + D + +A G L RGI V + D+I T + T GS G
Sbjct: 26 HAAIEAREKEVHAFVRHDKSARAQASGPL---RGIAVGIADIIDTAN-MPTEMGSEIYRG 81
Query: 137 SVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGK-NPYVLSADPC 195
DA VVM L++AGA I+GK + + F++R NP+ P
Sbjct: 82 WQPRSDAPVVMMLKRAGATIIGKTTTT------------AFASRDPTATLNPHNTGHSPG 129
Query: 196 GSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDT 255
GSSSG A +V A ++ ++LGT+T GS++ P++ IKP+ + GV S DT
Sbjct: 130 GSSSGSAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDT 189
Query: 256 IG 257
+G
Sbjct: 190 VG 191
>pdb|3A2Q|A Chain A, Structure Of 6-Aminohexanoate Cyclic Dimer Hydrolase
Complexed With Substrate
Length = 493
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 17/193 (8%)
Query: 52 RQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGI 111
R +++ +L++ I ++ +NP +NAVI + +KA E ++ A G G +
Sbjct: 18 RSGEISRTELLEATIAHVQAVNPEINAVI------IPLFEKARRESEL-ASGPFAG---V 67
Query: 112 PVLLKDM--IGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFR 169
P LLKD+ + D ++ G DA V ++R AG +++GK + E +
Sbjct: 68 PYLLKDLTVVSQGDINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGNQV 127
Query: 170 SLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSN 229
+ + P + G +NP+ L GSS G +VAA L V+ G + G++ P+S
Sbjct: 128 TTE-PEAW----GATRNPWNLGRSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVC 182
Query: 230 SVVGIKPTVGLTS 242
VVG+KPT G S
Sbjct: 183 GVVGLKPTRGRIS 195
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 11/122 (9%)
Query: 407 IEKIEEFGQDIFLAAQATNGIGNTEKAALLNLAK-LSRDGFEKAMTVNKLDALVTPRSDI 465
+E+ E G D+ + T T + L LAK +G + A L L
Sbjct: 373 VERWWEAGWDLLILPTVTR---QTPEIGELMLAKGTDLEGRQSAFISGSLQMLA-----F 424
Query: 466 APVLAIGGFPGINVPAGYDTEGVPFGINFGGLRGTEPKLIEIAYGFEQA--TMIRKPPSF 523
+ G P I++P G ++G+P G+ G E L+++A E A + R+P
Sbjct: 425 TVPFNVSGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLEGALPWVARRPQLL 484
Query: 524 KP 525
P
Sbjct: 485 NP 486
>pdb|3A1K|A Chain A, Crystal Structure Of Rhodococcus Sp. N771 Amidase
Length = 521
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 102/421 (24%), Positives = 155/421 (36%), Gaps = 67/421 (15%)
Query: 130 GSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYV 189
GS + G +RDA VV +L AGA + GKA + F + F+ G +NP+
Sbjct: 109 GSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLC-FSG----SSFTPASGPVRNPWD 163
Query: 190 LSADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPV 249
+ GSS G A VA V ++G + GSI P++ VVG KPT GL G P+
Sbjct: 164 RQREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPI 223
Query: 250 SPRQDTIGDICLSLFISDAKVXXXXXXXXXVDYNDPATKAASYYIPYGGYKQFXXXXXXX 309
D +G I + + DA + D NDP + + G Y
Sbjct: 224 ERTIDHLGPITRT--VHDAALMLSVIAGR--DGNDPRQADS---VEAGDYLS-TLDSDVD 275
Query: 310 XXXXXIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANIDVILNA------- 362
IVR F + + A +L + G +E NI L+A
Sbjct: 276 GLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGCT----VEEVNIPWHLHAFHIWNVI 331
Query: 363 TASGEATALVAEFKLALNA---YVKELVAS-PVRSLAEVIAFNEKFSDIEKIEEFGQDIF 418
G A ++ +NA Y EL+A R + A +E + G
Sbjct: 332 ATDGGAYQMLDGNGYGMNAEGLYDPELMAHFASRRIQHADALSETVKLVALTGHHG---- 387
Query: 419 LAAQATNGIGNTEKAALLNLAKLSRDGFEKAMTVNKLDALVTPR---------------- 462
+G NL L+R ++ A+ + D LV P
Sbjct: 388 -----ITTLGGASYGKARNLVPLARAAYDTAL--RQFDVLVMPTLPYVASELPAKDVDRA 440
Query: 463 ----------SDIAPVLAIGGFPGINVPAGYDTEGVPFGINFGGLRGTEPKLIEIAYGFE 512
++ AP + G P ++VPAG G+P G+ G + ++ + FE
Sbjct: 441 TFITKALGMIANTAP-FDVTGHPSLSVPAGL-VNGLPVGMMITGRHFDDATVLRVGRAFE 498
Query: 513 Q 513
+
Sbjct: 499 K 499
>pdb|3A1I|A Chain A, Crystal Structure Of Rhodococcus Sp. N-771 Amidase
Complexed With Benzamide
Length = 521
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 101/421 (23%), Positives = 155/421 (36%), Gaps = 67/421 (15%)
Query: 130 GSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYV 189
GS + G +RDA VV +L AGA + GKA + F + F+ G +NP+
Sbjct: 109 GSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLC-FSG----SSFTPASGPVRNPWD 163
Query: 190 LSADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPV 249
+ GSS G A VA V ++G + G+I P++ VVG KPT GL G P+
Sbjct: 164 RQREAGGSSGGSAALVANGDVDFAIGGDQGGAIRIPAAFCGVVGHKPTFGLVPYTGAFPI 223
Query: 250 SPRQDTIGDICLSLFISDAKVXXXXXXXXXVDYNDPATKAASYYIPYGGYKQFXXXXXXX 309
D +G I + + DA + D NDP + + G Y
Sbjct: 224 ERTIDHLGPITRT--VHDAALMLSVIAGR--DGNDPRQADS---VEAGDYLS-TLDSDVD 275
Query: 310 XXXXXIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANIDVILNA------- 362
IVR F + + A +L + G +E NI L+A
Sbjct: 276 GLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGCT----VEEVNIPWHLHAFHIWNVI 331
Query: 363 TASGEATALVAEFKLALNA---YVKELVAS-PVRSLAEVIAFNEKFSDIEKIEEFGQDIF 418
G A ++ +NA Y EL+A R + A +E + G
Sbjct: 332 ATDGGAYQMLDGNGYGMNAEGLYDPELMAHFASRRIQHADALSETVKLVALTGHHG---- 387
Query: 419 LAAQATNGIGNTEKAALLNLAKLSRDGFEKAMTVNKLDALVTPR---------------- 462
+G NL L+R ++ A+ + D LV P
Sbjct: 388 -----ITTLGGASYGKARNLVPLARAAYDTAL--RQFDVLVMPTLPYVASELPAKDVDRA 440
Query: 463 ----------SDIAPVLAIGGFPGINVPAGYDTEGVPFGINFGGLRGTEPKLIEIAYGFE 512
++ AP + G P ++VPAG G+P G+ G + ++ + FE
Sbjct: 441 TFITKALGMIANTAP-FDVTGHPSLSVPAGL-VNGLPVGMMITGRHFDDATVLRVGRAFE 498
Query: 513 Q 513
+
Sbjct: 499 K 499
>pdb|3E3P|A Chain A, Glycogen Synthase Kinase From Leishmania Major
pdb|3E3P|B Chain B, Glycogen Synthase Kinase From Leishmania Major
Length = 360
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 64 FY-IGEIRRLNPVLNAVIEVNPDALYQADKADYERKVKAPGSLV 106
FY +GE R + LN V+E PD L++ + Y R+V P L+
Sbjct: 88 FYTLGERDRRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILI 131
>pdb|3CBD|A Chain A, Directed Evolution Of Cytochrome P450 Bm3, To Octane
Monoxygenase 139-3
pdb|3CBD|B Chain B, Directed Evolution Of Cytochrome P450 Bm3, To Octane
Monoxygenase 139-3
Length = 455
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 51 FRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNP-DALYQADKADYERKVKAPGSLV 106
+R N Q F I IR L+ V+N + NP D Y +K ++ +K LV
Sbjct: 160 YRFNSFYRDQPHPFIISMIRALDEVMNKLQRANPDDPAYDENKRQFQEDIKVMNDLV 216
>pdb|2PKE|A Chain A, Crystal Structure Of Haloacid Delahogenase-Like Family
Hydrolase (Np_639141.1) From Xanthomonas Campestris At
1.81 A Resolution
pdb|2PKE|B Chain B, Crystal Structure Of Haloacid Delahogenase-Like Family
Hydrolase (Np_639141.1) From Xanthomonas Campestris At
1.81 A Resolution
Length = 251
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 15/51 (29%)
Query: 462 RSDIAPVLAIGGFPGINVPAGYDTEGVPFGINFG-----GLRGTEPKLIEI 507
RSD+ PVLAIGG+ GI P+ + + G+ EP+L E+
Sbjct: 190 RSDVEPVLAIGGW-GIY---------TPYAVTWAHEQDHGVAADEPRLREV 230
>pdb|2WAP|A Chain A, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
pdb|2WAP|B Chain B, 3d-Crystal Structure Of Humanized-Rat Fatty Acid Amide
Hydrolase (Faah) Conjugated With The Drug-Like Urea
Inhibitor Pf-3845
Length = 543
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 76/182 (41%), Gaps = 15/182 (8%)
Query: 65 YIGEIRRLNPVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDK 124
Y+G+ +N N V D Q +A + L G+PV LK+ K
Sbjct: 70 YLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQGL---------LYGVPVSLKECFSYKGH 120
Query: 125 QNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQG 184
+T S G D VV L+ GA+ ++ + S+ + + + GQ
Sbjct: 121 DSTLGLSLNE-GMPSESDCVVVQVLKLQGAVPFVHTNVPQ-----SMFSYDCSNPLFGQT 174
Query: 185 KNPYVLSADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLA 244
NP+ S P GSS G + + + LGT+ GSI PS+ + G+KPT S +
Sbjct: 175 MNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKS 234
Query: 245 GV 246
G+
Sbjct: 235 GL 236
>pdb|1MT5|A Chain A, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|B Chain B, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|C Chain C, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|D Chain D, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|E Chain E, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|F Chain F, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|G Chain G, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|H Chain H, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|I Chain I, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|J Chain J, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|K Chain K, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|L Chain L, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|M Chain M, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|N Chain N, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|O Chain O, Crystal Structure Of Fatty Acid Amide Hydrolase
pdb|1MT5|P Chain P, Crystal Structure Of Fatty Acid Amide Hydrolase
Length = 537
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 76/182 (41%), Gaps = 15/182 (8%)
Query: 65 YIGEIRRLNPVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDK 124
Y+G+ +N N V D Q +A + L G+PV LK+ K
Sbjct: 64 YLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQGL---------LYGVPVSLKECFSYKGH 114
Query: 125 QNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQG 184
+T S G D VV L+ GA+ ++ + S+ + + + GQ
Sbjct: 115 DSTLGLSLNE-GMPSESDCVVVQVLKLQGAVPFVHTNVPQ-----SMLSFDCSNPLFGQT 168
Query: 185 KNPYVLSADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLA 244
NP+ S P GSS G + + + LGT+ GSI PS+ + G+KPT S +
Sbjct: 169 MNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKS 228
Query: 245 GV 246
G+
Sbjct: 229 GL 230
>pdb|3UE3|A Chain A, Crystal Structure Of Acinetobacter Baumanni Pbp3
Length = 554
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 433 AALLNLAK----LSRDGFEKAMTVNKLDALVTPRSDIAPVLA---IGGFPGINVPAGYDT 485
A +L LA+ L+ G E ++++KLD + R + P +A + + +P G
Sbjct: 399 ATILQLAQGYAMLANHGVEMPLSLHKLDQVPEGRQVLDPKIADQVLMMLEQVTLPGGTAK 458
Query: 486 EGVPFGINFGGLRGTEPKL 504
+ V G GG GT KL
Sbjct: 459 QAVIPGYRVGGKTGTAHKL 477
>pdb|4DO3|A Chain A, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
pdb|4DO3|B Chain B, Structure Of Faah With A Non-steroidal Anti-inflammatory
Drug
Length = 571
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 76/182 (41%), Gaps = 15/182 (8%)
Query: 65 YIGEIRRLNPVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDK 124
Y+G+ +N N V D Q +A + L G+PV LK+ K
Sbjct: 90 YLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQGL---------LYGVPVSLKECFSYKGH 140
Query: 125 QNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQG 184
+T S G D VV L+ GA+ ++ + S+ + + + GQ
Sbjct: 141 DSTLGLSLNE-GMPSESDCVVVQVLKLQGAVPFVHTNVPQ-----SMLSFDCSNPLFGQT 194
Query: 185 KNPYVLSADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLA 244
NP+ S P GSS G + + + LGT+ GSI PS+ + G+KPT S +
Sbjct: 195 MNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKS 254
Query: 245 GV 246
G+
Sbjct: 255 GL 256
>pdb|4HBP|A Chain A, Crystal Structure Of Faah In Complex With Inhibitor
pdb|4HBP|B Chain B, Crystal Structure Of Faah In Complex With Inhibitor
Length = 550
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 76/182 (41%), Gaps = 15/182 (8%)
Query: 65 YIGEIRRLNPVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDK 124
Y+G+ +N N V D Q +A + L G+PV LK+ K
Sbjct: 71 YLGKAWEVNKGTNCVTSYLTDCETQLSQAPRQGL---------LYGVPVSLKECFSYKGH 121
Query: 125 QNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQG 184
+T S G D VV L+ GA+ ++ + S+ + + + GQ
Sbjct: 122 DSTLGLSLNE-GMPSESDCVVVQVLKLQGAVPFVHTNVPQ-----SMLSFDCSNPLFGQT 175
Query: 185 KNPYVLSADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLA 244
NP+ S P GSS G + + + LGT+ GSI PS+ + G+KPT S +
Sbjct: 176 MNPWKSSKSPGGSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKS 235
Query: 245 GV 246
G+
Sbjct: 236 GL 237
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,765,009
Number of Sequences: 62578
Number of extensions: 543362
Number of successful extensions: 1256
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1191
Number of HSP's gapped (non-prelim): 43
length of query: 525
length of database: 14,973,337
effective HSP length: 103
effective length of query: 422
effective length of database: 8,527,803
effective search space: 3598732866
effective search space used: 3598732866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)