Query         036327
Match_columns 525
No_of_seqs    294 out of 1622
Neff          8.3 
Searched_HMMs 46136
Date          Fri Mar 29 11:32:31 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036327.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036327hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK08137 amidase; Provisional  100.0  1E-100  2E-105  821.8  12.1  469   38-525     2-493 (497)
  2 PRK11910 amidase; Provisional  100.0  1E-100  3E-105  815.3  12.5  455   32-524   155-615 (615)
  3 COG0154 GatA Asp-tRNAAsn/Glu-t 100.0  1E-100  3E-105  808.3   9.4  441   38-522     3-474 (475)
  4 PRK06828 amidase; Provisional  100.0  7E-100  1E-104  808.4  12.2  468   40-523    11-490 (491)
  5 PRK06707 amidase; Provisional  100.0 2.1E-99  4E-104  808.7  12.0  468   34-523    63-536 (536)
  6 PRK07042 amidase; Provisional  100.0 1.4E-98  3E-103  799.0  10.6  436   38-525     3-462 (464)
  7 PRK06169 putative amidase; Pro 100.0 2.2E-98  5E-103  797.9  10.5  434   39-522     4-464 (466)
  8 PRK07486 amidase; Provisional  100.0 8.1E-98  2E-102  797.1  10.0  437   38-518     8-474 (484)
  9 PRK06170 amidase; Provisional  100.0 4.6E-98  1E-102  800.8   7.9  442   38-523     8-490 (490)
 10 PRK07488 indole acetimide hydr 100.0 1.2E-97  3E-102  793.4   9.8  436   38-521     7-471 (472)
 11 PRK07487 amidase; Provisional  100.0 3.2E-97  7E-102  788.9   8.8  425   39-518     5-460 (469)
 12 PRK09201 amidase; Provisional  100.0 9.3E-97  2E-101  784.6   7.7  427   38-517     3-457 (465)
 13 PRK06565 amidase; Validated    100.0 3.2E-96  7E-101  776.7  10.3  474   37-525     2-564 (566)
 14 PRK00012 gatA aspartyl/glutamy 100.0 1.6E-96  3E-101  783.4   7.6  429   51-512     1-459 (459)
 15 TIGR00132 gatA glutamyl-tRNA(G 100.0 1.4E-96  3E-101  783.9   7.1  430   47-514     1-460 (460)
 16 TIGR02715 amido_AtzE amidohydr 100.0 2.1E-96  4E-101  779.9   7.0  419   43-514     1-447 (452)
 17 PRK06102 hypothetical protein; 100.0 2.2E-96  5E-101  779.1   7.0  419   39-516     3-450 (452)
 18 PRK07056 amidase; Provisional  100.0 1.1E-95  2E-100  774.3   8.2  414   43-516     7-452 (454)
 19 PRK12470 amidase; Provisional  100.0 7.3E-95 1.6E-99  768.9  12.4  425   39-522     6-460 (462)
 20 PRK06061 amidase; Provisional  100.0 8.7E-95 1.9E-99  772.3  11.3  428   38-518    14-471 (483)
 21 PRK08186 allophanate hydrolase 100.0 8.1E-94 1.8E-98  777.0   8.5  424   40-518     5-451 (600)
 22 PRK07869 amidase; Provisional  100.0 1.6E-93 3.5E-98  761.5   9.7  425   39-518    12-465 (468)
 23 PRK06529 amidase; Provisional  100.0 1.3E-93 2.8E-98  764.4   8.6  425   40-514     2-477 (482)
 24 PRK07235 amidase; Provisional  100.0 7.6E-93 1.6E-97  757.9   9.4  447   36-515    19-501 (502)
 25 PRK05962 amidase; Validated    100.0 2.2E-92 4.8E-97  742.8   6.2  395   62-516     1-422 (424)
 26 PF01425 Amidase:  Amidase;  In 100.0 3.7E-91 8.1E-96  740.1  -6.8  404   60-505     1-441 (441)
 27 TIGR02713 allophanate_hyd allo 100.0 9.4E-87   2E-91  714.8   7.3  389   77-517     2-413 (561)
 28 PRK07139 amidase; Provisional  100.0 7.5E-84 1.6E-88  679.9   7.6  402   61-516     7-434 (439)
 29 PRK08310 amidase; Provisional  100.0 1.3E-82 2.8E-87  662.9   7.5  364   74-515     5-394 (395)
 30 PLN02722 indole-3-acetamide am 100.0 2.9E-82 6.3E-87  662.7   6.1  383   73-513     4-420 (422)
 31 KOG1211 Amidases [Translation, 100.0   1E-77 2.2E-82  617.6   6.8  437   51-513    27-493 (506)
 32 KOG1212 Amidases [Translation, 100.0 3.1E-76 6.7E-81  611.9   6.9  465   26-522    39-558 (560)
 33 PF11268 DUF3071:  Protein of u  35.3      24 0.00053   32.3   1.9   32   41-73     56-90  (170)
 34 COG1049 AcnB Aconitase B [Ener  27.3      26 0.00057   38.1   0.8   39  228-270   383-421 (852)
 35 PF14359 DUF4406:  Domain of un  24.1 1.1E+02  0.0024   24.9   3.8   25  326-350    11-35  (92)
 36 PF14237 DUF4339:  Domain of un  24.0      28  0.0006   24.1   0.1   22   41-62     13-34  (45)
 37 COG3603 Uncharacterized conser  20.9      69  0.0015   27.4   1.9   18  331-348   110-127 (128)

No 1  
>PRK08137 amidase; Provisional
Probab=100.00  E-value=1.1e-100  Score=821.84  Aligned_cols=469  Identities=42%  Similarity=0.652  Sum_probs=380.2

Q ss_pred             eeeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhc---cccceeeeEeCcchhccccchhhhhcccCCCceecccCchhh
Q 036327           38 SIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRL---NPVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVL  114 (525)
Q Consensus        38 ~~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~---~~~lna~~~~~~~al~~A~~~d~~~~~~~g~~~gpL~GvPi~  114 (525)
                      ++..+|+.+|+++|++|++||+||+++||+||+++   |+.+|||++++++|+++|+++|+++  ++|+.+||||||||+
T Consensus         2 ~~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~~~~lna~~~~~~~al~~A~~~d~~~--~~g~~~gpL~GvPi~   79 (497)
T PRK08137          2 TALEERAGALQAAMPAGAAPASQLTRAYLQRIARIDRDGPRLNAVIELNPDAEADAAALDAER--KAGKVRGPLHGIPVL   79 (497)
T ss_pred             chhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceeEEEEeCHHHHHHHHHHHHHH--hcCCCCCCcCCceee
Confidence            56778999999999999999999999999999987   6789999999888999999999988  788888999999999


Q ss_pred             hhhhhccc-ccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecC
Q 036327          115 LKDMIGTK-DKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSAD  193 (525)
Q Consensus       115 vKD~~~~~-gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~  193 (525)
                      |||||+++ | ++||+||..++++++.+||++|+|||+||||++||||||||+++.++.+.+++|++||+|+||||++|+
T Consensus        80 vKD~~~v~~G-~~tt~Gs~~~~~~~~~~DA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~~~~~~  158 (497)
T PRK08137         80 LKDNIDAADP-MPTTAGSLALAGNRPTRDAFLVARLRDAGAVILGKANLSEWANFRSTRSSSGWSARGGLTRNPYALDRS  158 (497)
T ss_pred             eecceeecCC-CCcCcCcHhhcCCCCCcCcHHHHHHHHCCCEEEeecChHHhhccCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence            99999999 8 999999999999999999999999999999999999999999755434567899999999999999999


Q ss_pred             CCCCCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccC
Q 036327          194 PCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSS  273 (525)
Q Consensus       194 ~GGSSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~  273 (525)
                      |||||||||||||+|++|+|+||||||||||||+||||||||||+||||+.|++|+++++|++|||||||  +|+++++ 
T Consensus       159 ~GGSSgGsAaAVAaG~~~~aiGtDtgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv--~D~a~~l-  235 (497)
T PRK08137        159 PCGSSSGSGAAVAAGLAAVAIGTETDGSITCPAAINGLVGLKPTVGLVSRDGIVPISHSQDTAGPMTRTV--ADAAAVL-  235 (497)
T ss_pred             CCcCccHHHHHHHcCCCceeeecCCCCccccchhhcCeeeecCCCCceeCCCCCCcccccCcccCeeCCH--HHHHHHH-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999  9999999 


Q ss_pred             CCceeeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeee
Q 036327          274 NGSSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEI  353 (525)
Q Consensus       274 ~~vl~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~  353 (525)
                       ++|.|+|+.|+.+...+.  ...+|...+....++++||||+.+++   .++++++++++++++.|+++||+|++ +++
T Consensus       236 -~vl~g~d~~d~~~~~~~~--~~~~~~~~~~~~~~~~lrIgv~~~~~---~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~  308 (497)
T PRK08137        236 -TAIAGGDPADPATASAPA--PAVDYVAALDADALRGARLGVARNYL---GYHPEVDAQFERALAELKAAGAVVID-VVD  308 (497)
T ss_pred             -HHHhCCCCCCcccccCCC--CccchhhhccccccCCCEEEEEchhc---cCCHHHHHHHHHHHHHHHHCCCEEEe-ccC
Confidence             999999999866543210  11234333322246889999997643   37999999999999999999999987 566


Q ss_pred             eceeeEeecccccchhhHHHHHHHHHHHHHHHHh-hchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCCCch-h
Q 036327          354 ANIDVILNATASGEATALVAEFKLALNAYVKELV-ASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNT-E  431 (525)
Q Consensus       354 p~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  431 (525)
                      |.++.+.    ..+..++..|+...+..|+.... .....++.+++.+++.+.. .....+++...........++.. +
T Consensus       309 ~~~~~~~----~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  383 (497)
T PRK08137        309 LDDGDWG----EAEKVVLLHEFKAGLNAYLRSTAPHAPVRTLADLIAFNRAQHA-REMPYFGQELFEQAQAAPGLDDPAY  383 (497)
T ss_pred             CchhhHH----HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhhccch-hhhcccCHHHHHHHHccCCCCHHHH
Confidence            6443221    12345566787777776654321 1112334444443322110 11122333333333233333433 3


Q ss_pred             HHHHhhhhhc-chhhhhhhhhhccccccccCCCC----------------ccceeeecCCCCcccCCCCCCCCCcceeec
Q 036327          432 KAALLNLAKL-SRDGFEKAMTVNKLDALVTPRSD----------------IAPVLAIGGFPGINVPAGYDTEGVPFGINF  494 (525)
Q Consensus       432 ~~a~~~~r~~-~~~~~~~~~~~~~~DvLl~Pt~~----------------~t~~~n~~G~PaisvP~G~~~~GlPvGlQi  494 (525)
                      .++++.+++. .++.+.++|+++++|+||+||++                ++.+||++|+|++|||+|+. +|||+||||
T Consensus       384 ~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~~ap~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvQl  462 (497)
T PRK08137        384 LDALADAKRLAGPEGIDAALKEHRLDALVAPTTGPAWLIDLINGDSFGGSSSTPAAVAGYPHLTVPMGQV-QGLPVGLSF  462 (497)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCEEEeCCCCCCcccccccccccccccccccHhhCCCeEEEeCCCC-CCcCeEEEE
Confidence            3443333433 24678899976679999999975                35689999999999999997 899999999


Q ss_pred             CCccCCCcceEeeeeccccceeccCCCCCCC
Q 036327          495 GGLRGTEPKLIEIAYGFEQATMIRKPPSFKP  525 (525)
Q Consensus       495 vg~~~~D~~LL~~A~~lE~~~~~~~~P~~~p  525 (525)
                      +|++|+|++||++|++||+..+||++|.|.|
T Consensus       463 ig~~~~d~~LL~~a~~lE~~~~~~~~p~~~~  493 (497)
T PRK08137        463 IGAAWSEARLLELGYAYEQATHARREPRFVE  493 (497)
T ss_pred             ECCCCCHHHHHHHHHHHHHhcCcCCCCCCCC
Confidence            9999999999999999999999999898764


No 2  
>PRK11910 amidase; Provisional
Probab=100.00  E-value=1.5e-100  Score=815.29  Aligned_cols=455  Identities=33%  Similarity=0.537  Sum_probs=385.4

Q ss_pred             ccceeeeeeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhccc---cceeeeEeCcchhccccchhhhhcccCCCceecc
Q 036327           32 ANSYAFSIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNP---VLNAVIEVNPDALYQADKADYERKVKAPGSLVGL  108 (525)
Q Consensus        32 ~~~~~~~~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~---~lna~~~~~~~al~~A~~~d~~~~~~~g~~~gpL  108 (525)
                      +...+..+.+.++.+|+++|++|++|++||+++||+||+++|+   .+|||++++++|+++|+++|+++  ..+  .|||
T Consensus       155 ~~~~~~~i~~~ti~~L~~~l~~g~lT~~elv~a~L~RI~~~n~~g~~LnA~i~~~~~Al~~A~~lD~~~--~~~--~gPL  230 (615)
T PRK11910        155 LEAKEPLIIGADVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLNLNAITEINPTIIAEAEQLDKEN--TTN--KSAL  230 (615)
T ss_pred             cCcccccchhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceeEEEEcCHHHHHHHHHHHHHh--ccC--CCCc
Confidence            5566677889999999999999999999999999999999997   79999999999999999999887  444  4899


Q ss_pred             cCchhhhhhhhcccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCce
Q 036327          109 RGIPVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPY  188 (525)
Q Consensus       109 ~GvPi~vKD~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~  188 (525)
                      |||||+|||||+++| |+||+||.++.+++|.+||++|+|||+|||||+|||||+||+++.+..+.++||++||+|+|||
T Consensus       231 ~GIPv~VKDni~t~G-~pTTaGS~al~~~~p~~DA~vV~rLr~AGAIIlGKTNm~EfA~~~~~~~~~g~s~~~G~t~NP~  309 (615)
T PRK11910        231 YGMPVLLKDNIGTKE-LPTSAGTVALKDWVIGKDATIVENLKANGALILGKTNMSEWAAGMDEDLPNGYSGKKGQSKNPY  309 (615)
T ss_pred             CCCEEEEEcCcccCC-CccCcccHhhcCCCCCCCHHHHHHHHHCCCEEEEEeCcchhhhCCCCCCCCCCCCCCCCcCCCC
Confidence            999999999999997 9999999999999999999999999999999999999999998665445788999999999999


Q ss_pred             eeecCCCCCCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccc
Q 036327          189 VLSADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDA  268 (525)
Q Consensus       189 ~~~~~~GGSSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~  268 (525)
                      |++|+|||||||||+|||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||||  +|+
T Consensus       310 ~~~r~pGGSSsGSAAAVAaG~a~~AiGTDTgGSIR~PAa~cGvVGlKPT~G~vSr~GviPls~slDtvGPmaRsV--~D~  387 (615)
T PRK11910        310 SSNLDPSGSSSGSATAATSDFAAIAIGTETNGSIITPASAQSAVGYKPSQGLVNNKGIIPLSSRFDTPGPLTRTV--NDA  387 (615)
T ss_pred             CCCCCCCCCCchHHHHHhcCCceEEeecCCCCccccchHHcCceeEecCCCCCCCCCCcCCcCCCCeeccccCCH--HHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999  999


Q ss_pred             eeccCCCceeeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceee
Q 036327          269 KVSSSNGSSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLV  348 (525)
Q Consensus       269 a~~l~~~vl~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vv  348 (525)
                      ++++  ++|.|.++.++.        .         ...++++||||+.+.     .++++.++++++++.|+++|++|+
T Consensus       388 a~ll--~vi~g~~~~~~l--------~---------~~~lkglRIGv~~~~-----~~~~v~~a~~~a~~~L~~~Ga~Vv  443 (615)
T PRK11910        388 YLTT--NALTNTTSNPPL--------S---------TDALKGKRIGLLADG-----ESNEETAVIKKIKLDLQKAGATII  443 (615)
T ss_pred             HHHH--HHhcCCCCcCcc--------C---------cccCCCCEEEEECCC-----CCHHHHHHHHHHHHHHHHCCCEEE
Confidence            9999  999987653321        1         134688999998642     467899999999999999999998


Q ss_pred             eeeeeeceeeEeecccccchhhHHHHHHHHHHHHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCCC
Q 036327          349 DYLEIANIDVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIG  428 (525)
Q Consensus       349 e~~~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (525)
                      +.+++|+++...    ..+..++.+|+...+..|+.. ...+++++.+++.|+..++.  ....+++..++.........
T Consensus       444 e~~~~p~~~~~~----~~~~~l~~~E~~~~l~~yl~~-~~~~v~sL~dl~~fn~~~~~--~~~~~gq~~~~~~~~~~~~~  516 (615)
T PRK11910        444 EGIAVGEFEQKD----TDYASLLNADFKHDLNQFLQV-NHSPMSTLESIIQFNQTNPT--RNMKYGQSELVKSQQSTITK  516 (615)
T ss_pred             eCCCCccHHHHH----HHHHHHHHHHHHHHHHHHHHh-cCCCCCCHHHHHHHHhcCcc--cccCcCHHHHHhhhccCCCH
Confidence            744555443221    234567789999999999864 34567889999999877652  22245665443322211111


Q ss_pred             chhHHHHhhhhhcchhhhhhhhhhccccccccCCCCc--cceeeecCCCCcccCCCCCC-CCCcceeecCCccCCCcceE
Q 036327          429 NTEKAALLNLAKLSRDGFEKAMTVNKLDALVTPRSDI--APVLAIGGFPGINVPAGYDT-EGVPFGINFGGLRGTEPKLI  505 (525)
Q Consensus       429 ~~~~~a~~~~r~~~~~~~~~~~~~~~~DvLl~Pt~~~--t~~~n~~G~PaisvP~G~~~-~GlPvGlQivg~~~~D~~LL  505 (525)
                      .+++...++.++..++.++++|+++++|+||+|+...  ....+++|+|+|+||+|++. +|||+||||+|++|+|++||
T Consensus       517 ~~~~~~~~~~~~~~~~~l~~~~~~~~lDalv~P~~~~~~~~~~~~aG~PaItVP~G~~~~~GlPvGlqliG~~~sE~~LL  596 (615)
T PRK11910        517 QQADNLASNLIQSSQNELDSVLQKDKLDAVVTIGMGGSVMFLAPIAGNPELTIPAGYDEESNQPISLTFITARNSDKILL  596 (615)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEeCCCCCcchhhhhhcCCCeEEecccCCCCCCcCeEEEEECCCCCHHHHH
Confidence            2223334445555577799999877899999998542  23456999999999999986 79999999999999999999


Q ss_pred             eeeeccccceeccCCCCCC
Q 036327          506 EIAYGFEQATMIRKPPSFK  524 (525)
Q Consensus       506 ~~A~~lE~~~~~~~~P~~~  524 (525)
                      ++|++||++++.|++|.|+
T Consensus       597 ~~A~a~Eq~t~~r~~P~~~  615 (615)
T PRK11910        597 NMGYAYEQQSKNRKSPNLK  615 (615)
T ss_pred             HHHHHHHHhcCCCCCCCCC
Confidence            9999999999999999875


No 3  
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
Probab=100.00  E-value=1.2e-100  Score=808.29  Aligned_cols=441  Identities=31%  Similarity=0.434  Sum_probs=360.0

Q ss_pred             eeeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcc-hhc--cccchhhhhcccCCCceecccCchhh
Q 036327           38 SIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALY--QADKADYERKVKAPGSLVGLRGIPVL  114 (525)
Q Consensus        38 ~~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~-al~--~A~~~d~~~~~~~g~~~gpL~GvPi~  114 (525)
                      .+..+++.+|.++++++++|++|+++++|+||+++|+.+|+++++++| ++.  +|+++|+++  ++|+..||||||||+
T Consensus         3 ~~~~~~~~~l~~~~~~~~~s~~e~~~~~l~ri~~~~~~~na~~~~~~e~a~~~~~A~~~d~~~--~~g~~~gpL~GvPia   80 (475)
T COG0154           3 ALTELTAAELAALLRAKELSAVELVEAYLARIEALNPDLNAFVAVDPEAALALAEAAAADARL--AAGEPLGPLAGVPIA   80 (475)
T ss_pred             chhhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeChhhcchHHHHHHHHHHH--hcCCCCCCcCCceEE
Confidence            456789999999999999999999999999999999999999999999 765  999999998  888888999999999


Q ss_pred             hhhhhcccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCC
Q 036327          115 LKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADP  194 (525)
Q Consensus       115 vKD~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~  194 (525)
                      |||||+|+| ++||+||+.+++++|.+||++|+|||++||||+||||||||+|     +..++|++||+|+||||++|+|
T Consensus        81 vKDn~~~~G-~~Tt~gS~~l~~~~p~~DA~vV~rL~~aGaviiGKTNm~Efa~-----g~~~~~s~~G~t~NP~~~~~~p  154 (475)
T COG0154          81 VKDNIDTAG-LPTTAGSKALEDYVPPYDATVVERLRAAGAVILGKTNMDEFAM-----GSSTENSAFGPTRNPWNLERVP  154 (475)
T ss_pred             EeeccccCC-CccCccChhhccCCCCcCcHHHHHHHHCCCEEEeecCCchhhc-----CCCCCCCCCCCCCCCCCCCCCC
Confidence            999999997 9999999999999999999999999999999999999999999     7889999999999999999999


Q ss_pred             CCCCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccCC
Q 036327          195 CGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSN  274 (525)
Q Consensus       195 GGSSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~  274 (525)
                      ||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||  +|+++++  
T Consensus       155 GGSSgGSAaAVAag~~~~alGSDtGGSIR~PAa~cGvvGlKPT~Grvsr~g~~~~a~sld~~GplartV--~D~a~l~--  230 (475)
T COG0154         155 GGSSGGSAAAVAAGLVPLALGSDTGGSIRIPAAFCGLVGLKPTYGRVSRYGVVPLASSLDQIGPLARTV--RDAALLL--  230 (475)
T ss_pred             CcCchHHHHHHHhCCcchhcccCCCCchhhhhhhhCceeeCCCCCccCCCCCccccCCcCccCcccCCH--HHHHHHH--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999  9999999  


Q ss_pred             CceeeeecCCc-ccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeee
Q 036327          275 GSSISVDYNDP-ATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEI  353 (525)
Q Consensus       275 ~vl~g~d~~d~-~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~  353 (525)
                      ++|+|+|+.|. .....    +..+  + .....++++|||++.++....+.++++.++++++++.|+++|++|++ +++
T Consensus       231 ~v~~g~D~~d~~~~~~~----~~~~--~-~~~~~~~~lrigv~~~~~~~~~~~~~v~~~~~~a~~~l~~~Ga~v~~-v~l  302 (475)
T COG0154         231 DVIAGPDPRDSPLPPPP----PVPP--A-LAGKDLKGLRIGVPKELGGGGPLDPDVRAAFEAAVKALEAAGAEVVE-VSL  302 (475)
T ss_pred             HHHcCCCCccccccccc----Cccc--h-hhccCCCCcEEEEECcccccCCCcHHHHHHHHHHHHHHHHCCCEEEe-ccC
Confidence            99999999984 22111    1111  1 22256788999999997664467889999999999999999999997 687


Q ss_pred             eceeeEeecccccchhhHHHHHHHHHHHHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCC-CchhH
Q 036327          354 ANIDVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGI-GNTEK  432 (525)
Q Consensus       354 p~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  432 (525)
                      |.......      .......... ...|-..       . .+.  +.     ......++.++..+...+... ...++
T Consensus       303 p~~~~~~~------~~~~~~~~~~-~~~~~~~-------~-~~~--~~-----~~~~~~~~~~v~~ri~~G~~~~~~~~~  360 (475)
T COG0154         303 PLLSDDYA------LAAYYLARFD-GERYGLR-------A-ADL--YG-----KTRAEGFGPEVKRRIMLGTYLLSAGYY  360 (475)
T ss_pred             Cchhhhhh------hhHHHHHHhh-hhhhhhc-------c-hhh--hh-----hhhhhcccHHHHHHHhccccccchHHH
Confidence            74322111      0000000000 0000000       0 000  00     011123444444333333333 23344


Q ss_pred             HHHhhhh--hcchhhhhhhhhhccccccccCCCC------------------------ccceeeecCCCCcccCCCCCCC
Q 036327          433 AALLNLA--KLSRDGFEKAMTVNKLDALVTPRSD------------------------IAPVLAIGGFPGINVPAGYDTE  486 (525)
Q Consensus       433 ~a~~~~r--~~~~~~~~~~~~~~~~DvLl~Pt~~------------------------~t~~~n~~G~PaisvP~G~~~~  486 (525)
                      .+...+.  .++++.+.++|+  ++|+|++||++                        +|.++|++|+|+||||+|+..+
T Consensus       361 ~a~~~~~~~~~i~~~~~~~f~--~~D~ll~Pt~~~~a~~ig~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~  438 (475)
T COG0154         361 DAYYRRAQKTLIRRAFDKLFE--EVDVLLTPTTPTPAPKIGESESDGDDPLEMYLLDVFTVPANLAGLPAISVPAGFTAD  438 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--hCCEEEeCCCCCCCcccccccccccCHHHHhhhccccccccccCCCeEEeccCCCCC
Confidence            4333322  233567999998  59999999986                        3678999999999999999888


Q ss_pred             CCcceeecCCccCCCcceEeeeeccccceeccCCCC
Q 036327          487 GVPFGINFGGLRGTEPKLIEIAYGFEQATMIRKPPS  522 (525)
Q Consensus       487 GlPvGlQivg~~~~D~~LL~~A~~lE~~~~~~~~P~  522 (525)
                      |||+||||+|++|+|.+||++|++||++++|+++++
T Consensus       439 GlPvGlqlig~~~~d~~LL~~a~~~E~~~~~~~~~~  474 (475)
T COG0154         439 GLPVGLQLIGPAFDDATLLRLAAALEQALGWHRRPP  474 (475)
T ss_pred             CCCeeEEEecCCCCHHHHHHHHHHHHHhhCCCCCCC
Confidence            999999999999999999999999999999876554


No 4  
>PRK06828 amidase; Provisional
Probab=100.00  E-value=6.6e-100  Score=808.44  Aligned_cols=468  Identities=40%  Similarity=0.600  Sum_probs=380.0

Q ss_pred             eccchhhhhhHhhhhhhhhhhhHHhhhhhhhhcc---ccceeeeEeCcchhccccchhhhhcccCCCceecccCchhhhh
Q 036327           40 KEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLN---PVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLLK  116 (525)
Q Consensus        40 ~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~---~~lna~~~~~~~al~~A~~~d~~~~~~~g~~~gpL~GvPi~vK  116 (525)
                      .++++.+|+++|++|++||+||+++||+||+++|   +.+|||+++++|++++|+++|+++  +.|+.+||||||||+||
T Consensus        11 ~~~~~~~l~~~l~~g~~t~~el~~~~l~ri~~~~~~~~~lna~~~~~~~al~~A~~~d~~~--~~g~~~gpL~GvPv~vK   88 (491)
T PRK06828         11 KELTIHDIQTAMEDGKLTSKELVMYYLHRIAKYDQDGPKINSILEINPDAIFIAEALDHER--KIKGVRGPLHGIPVLLK   88 (491)
T ss_pred             ccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCeeEEEEecCHHHHHHHHHHHHHH--hcCCCCCCccCceeeee
Confidence            3568999999999999999999999999999999   589999999988999999999988  78888899999999999


Q ss_pred             hhhcccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceee---ecC
Q 036327          117 DMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVL---SAD  193 (525)
Q Consensus       117 D~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~---~~~  193 (525)
                      |||+++||++||+||..+.++++.+||++|++||++|||++||||||||+++.+.++..++|++||+|+||||+   +|+
T Consensus        89 D~~~v~gg~~tt~Gs~~~~~~~~~~da~vV~~Lr~aGaii~GKTn~~Efa~~~~~~~~~g~n~~~G~t~NP~d~~~~~r~  168 (491)
T PRK06828         89 DNIETNDSMHTSAGTIALEQHISSEDAFLVTKLREAGAVILGKANMTELANFMSFEMWAGYSARGGQTINPYGTGEDDMF  168 (491)
T ss_pred             eeEEecCCCcCCcCcHHHcCCCCCCChHHHHHHHHCCCEEEeecChHHHhhccCCCCCCCcCCCCCCcCCCCCCccCCcC
Confidence            99999944999999999999999999999999999999999999999999743323468899999999999999   689


Q ss_pred             CCCCCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccC
Q 036327          194 PCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSS  273 (525)
Q Consensus       194 ~GGSSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~  273 (525)
                      |||||||||++||+|++|+|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||+|  +|+++++ 
T Consensus       169 pGGSSgGsAaaVAag~~~~aiGtDtgGSiRiPAa~cGvvGlKPT~G~vs~~G~~p~~~s~d~~Gp~arsv--~D~a~~~-  245 (491)
T PRK06828        169 VGGSSTGSAIAVAANFTVVSVGTETDGSILSPAVQNSVVGIKPTVGLISRRGIIPFTYSQDTAGPFARTV--TDAAILL-  245 (491)
T ss_pred             CCcCchHHHHHHHcCCCceEeecCCCCccccchhhcCceeecCCCCCccCCCCCCCccCCCeeccccCCH--HHHHHHH-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999  9999999 


Q ss_pred             CCceeeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCc--cccCCcchhHHHHHHHHHHHhhccceeeeee
Q 036327          274 NGSSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPF--FNFDKGSALTQAFNYHLQTLRQQGAVLVDYL  351 (525)
Q Consensus       274 ~~vl~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~--~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~  351 (525)
                       ++|.|+|+.|+.+...+.. +..+|...+....++++||||+.+.+  +. .++++++++++++++.|+++||+|++.+
T Consensus       246 -~~l~g~d~~d~~~~~~~~~-~~~~~~~~~~~~~~~~lrigv~~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~~~  322 (491)
T PRK06828        246 -GSLTGVDEKDVVTHKSEGI-AEHDYTKYLDANGLNGAKIGVYNNAPKEYY-ESGEYDEKLFKETIEVLRSEGATVVEDI  322 (491)
T ss_pred             -HHHhCCCccCccccccCcC-CCCchhhhhccccCCCCEEEEEcCcccccc-CCCHHHHHHHHHHHHHHHhcCCEEEecc
Confidence             9999999988655321000 11235443332357899999975421  22 3799999999999999999999998744


Q ss_pred             eeeceeeEeecccccchhhHHHHHHHHHHHHHHHHhh-chhhhHHHHHhhcccccchHHHHHhhhhhhh-hhhhccCCC-
Q 036327          352 EIANIDVILNATASGEATALVAEFKLALNAYVKELVA-SPVRSLAEVIAFNEKFSDIEKIEEFGQDIFL-AAQATNGIG-  428 (525)
Q Consensus       352 ~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-  428 (525)
                      ++|.+...      ....+...|+...+..|+..+.. .+.+++.+++.++..+.  +....+++.... .......++ 
T Consensus       323 ~~p~~~~~------~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~  394 (491)
T PRK06828        323 DIPSFHRE------WSWGVLLYELKHSLDNYLSKLPSTIPVHSISELMEFNENIA--ERALKYGQTKLERRKDFPNTLRN  394 (491)
T ss_pred             cCccchhH------HHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHhhhch--hhhhccCHHHHHHHHhcCCCCCh
Confidence            55543221      11234567777777777653322 23455667776654322  112234433222 122222333 


Q ss_pred             chhHHHHhhhhhc-chhhhhhhhhhccccccccCCCCccceeeecCCCCcccCCCCCCCCCcceeecCCccCCCcceEee
Q 036327          429 NTEKAALLNLAKL-SRDGFEKAMTVNKLDALVTPRSDIAPVLAIGGFPGINVPAGYDTEGVPFGINFGGLRGTEPKLIEI  507 (525)
Q Consensus       429 ~~~~~a~~~~r~~-~~~~~~~~~~~~~~DvLl~Pt~~~t~~~n~~G~PaisvP~G~~~~GlPvGlQivg~~~~D~~LL~~  507 (525)
                      .+|.++++.++.+ .++.++++|+++++|+||+||++...++|++|+|++|||+|+..+|||+||||+|++|+|.+||++
T Consensus       395 ~~y~~a~~~r~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~~~~~~~GlPaisvP~G~~~~GlPvGlQlig~~~~D~~LL~~  474 (491)
T PRK06828        395 PEYLNARLEDIYFSQEQGIDFALEKYNLDAILFPSYIGSTICAKAGYPSIAIPAGYMEGGRPFGITLASTAFSEGTLIKL  474 (491)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHhcCCCEEEeCCCCcccchhhcCCCeEEeecCCCCCCcCeEEEEECCCCCHHHHHHH
Confidence            3444444443333 235799999876799999999998888999999999999999889999999999999999999999


Q ss_pred             eeccccceeccCCCCC
Q 036327          508 AYGFEQATMIRKPPSF  523 (525)
Q Consensus       508 A~~lE~~~~~~~~P~~  523 (525)
                      |++||++.+||++|++
T Consensus       475 A~a~E~~~~~r~~P~~  490 (491)
T PRK06828        475 AYAFEQATKHRKIPGL  490 (491)
T ss_pred             HHHHHHhCCCCCCCCC
Confidence            9999999999888876


No 5  
>PRK06707 amidase; Provisional
Probab=100.00  E-value=2.1e-99  Score=808.68  Aligned_cols=468  Identities=34%  Similarity=0.535  Sum_probs=387.2

Q ss_pred             ceeeeeeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhcc---ccceeeeEeCcchhccccchhhhhcccCCCceecccC
Q 036327           34 SYAFSIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLN---PVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRG  110 (525)
Q Consensus        34 ~~~~~~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~---~~lna~~~~~~~al~~A~~~d~~~~~~~g~~~gpL~G  110 (525)
                      .++..|.++++.+|+++|++|++|++|++++||+||+++|   +.+|||++++++++++|+++|+++  ++|. .+||||
T Consensus        63 ~~~~~i~~~~i~~l~~~~~~g~lt~~el~~~~l~ri~~~~~~~~~lna~~~~~~~al~~A~~~d~~~--~~~~-~~pL~G  139 (536)
T PRK06707         63 IKEKEVVNATVDELQKMIDDGKLSYEELTSIYLFRIQEHDQNGITLNSVTEINPNAMEEARKLDQER--SRNK-KSNLYG  139 (536)
T ss_pred             cchhhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCceEEEEECCHHHHHHHHHHHHHH--hcCC-CCCcCC
Confidence            3445566789999999999999999999999999999998   479999999988999999999987  6665 489999


Q ss_pred             chhhhhhhhcc-cccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCcee
Q 036327          111 IPVLLKDMIGT-KDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYV  189 (525)
Q Consensus       111 vPi~vKD~~~~-~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~  189 (525)
                      |||+|||||++ +| |+||+||..+.++++.+||++|+|||++||||+|||||+||++++++....|+|++||+|+||||
T Consensus       140 iPi~vKD~i~~~~g-~~TtaGs~~l~~~~~~~DA~vV~rLr~AGAiilGKtnm~E~a~~~~~~~~~g~s~~~G~t~NP~~  218 (536)
T PRK06707        140 IPVVVKDNVQTAKV-MPTSAGTYVLKDWIADQDATIVKQLKEEGAFVLGKANMSEWANYLSFTMPSGYSGKKGQNLNPYG  218 (536)
T ss_pred             CeEEEecccccCCC-CccCcccHhhccCCCCCChHHHHHHHHCCCEEEEecCchhhhccCCCCCCCCCCCCCCCCCCCCC
Confidence            99999999999 75 99999999999999999999999999999999999999999976655567899999999999999


Q ss_pred             e-ecCCCCCCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccc
Q 036327          190 L-SADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDA  268 (525)
Q Consensus       190 ~-~~~~GGSSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~  268 (525)
                      + .++|||||||||+|||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||+|  +|+
T Consensus       219 ~~~~~pGGSSsGSAaAVAag~~~~aiGtDtgGSIr~PAs~~GvvGlKPT~G~vs~~Gv~p~s~slDt~Gp~artV--~D~  296 (536)
T PRK06707        219 PIKFDTSGSSSGSATVVAADFAPLAVGTETTGSIVAPAAQQSVVGLRPSLGMVSRTGIIPLAETLDTAGPMARTV--KDA  296 (536)
T ss_pred             cccCCCCCCCchHHHHHhCCCCceEEecCCCCcccccHHHcCeEEEeCCCCcccCCCCcCcccccCeecCeeCCH--HHH
Confidence            9 6899999999999999999999999999999999999999999999999999999999999999999999999  999


Q ss_pred             eeccCCCceeeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHH-HHHHHHHHhhcccee
Q 036327          269 KVSSSNGSSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQA-FNYHLQTLRQQGAVL  347 (525)
Q Consensus       269 a~~l~~~vl~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a-~~~a~~~L~~~G~~V  347 (525)
                      ++++  ++|.|.|+.|+.+...+ ..+..+|...+....++++||||+.++.    .++++.++ ++++++.|+++|++|
T Consensus       297 a~~l--~~~~g~d~~d~~~~~~~-~~~~~~~~~~l~~~~l~~~rigv~~~~~----~~~~~~~a~~~~a~~~L~~~Ga~i  369 (536)
T PRK06707        297 ATLF--NAMIGYDEKDVMTEKVK-DKERIDYTKDLSIDGLKGKKIGLLFSVD----QQDENRKAVAEKIRKDLQDAGAIL  369 (536)
T ss_pred             HHHH--HHHcCCCCCcccccccc-ccCCcchhhhccccCCCCCEEEEECCcC----CCHHHHHHHHHHHHHHHHHcCCEE
Confidence            9999  99999999986554221 0122346554443468899999997642    46788888 599999999999999


Q ss_pred             eeeeeeeceeeEeecccccchhhHHHHHHHHHHHHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCC
Q 036327          348 VDYLEIANIDVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGI  427 (525)
Q Consensus       348 ve~~~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (525)
                      ++.+++|....       ....++..|+..++..|+......+.+++.+++.|+..+.  .....+++............
T Consensus       370 v~~~~l~~~~~-------~~~~~~~~e~~~~l~~y~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~  440 (536)
T PRK06707        370 TDYIQLNNGGV-------DNLQTLEYEFKHNVNDYFSQQKNVPVKSLEEIIAFNKKDS--KRRIKYGQTLIEASEKSAIT  440 (536)
T ss_pred             EeccCCchhhH-------HHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHhcCHHH--HHHHHccchhhhhhhhcccc
Confidence            86335543110       1234567899999988876544444566777777654322  11122344332211111112


Q ss_pred             CchhHHHHhhhhhcchhhhhhhhhhccccccccCCCCccceeeecCCCCcccCCCCCCCCCcceeecCCccCCCcceEee
Q 036327          428 GNTEKAALLNLAKLSRDGFEKAMTVNKLDALVTPRSDIAPVLAIGGFPGINVPAGYDTEGVPFGINFGGLRGTEPKLIEI  507 (525)
Q Consensus       428 ~~~~~~a~~~~r~~~~~~~~~~~~~~~~DvLl~Pt~~~t~~~n~~G~PaisvP~G~~~~GlPvGlQivg~~~~D~~LL~~  507 (525)
                      .+.++...++.|+..++.++++|+++++|+|++|....+.++|++|+|+||||+|++.+|+|+||||+|++|+|.+||++
T Consensus       441 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~Dall~p~~~~t~~an~aG~PaitvP~G~~~~GlP~Glqlig~~~~e~~LL~~  520 (536)
T PRK06707        441 KDEFEKVVQTSQENAKKELDRYLVEKGLDALVMINNEEVLLSAVAGYPELAVPAGYDNNGEPVGAVFVGKQFGEKELFNI  520 (536)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEecCCCcchhhHhcCCCeEEEecccCCCCCCeEEEEECCCCChHHHHHH
Confidence            23444455556666677799999877899999998777889999999999999999889999999999999999999999


Q ss_pred             eeccccceeccCCCCC
Q 036327          508 AYGFEQATMIRKPPSF  523 (525)
Q Consensus       508 A~~lE~~~~~~~~P~~  523 (525)
                      |++||+++++|++|.+
T Consensus       521 A~~~E~~~~~r~~p~~  536 (536)
T PRK06707        521 GYAYEQQSKNRKPPKL  536 (536)
T ss_pred             HHHHHHhCcCCCCCCC
Confidence            9999999999888863


No 6  
>PRK07042 amidase; Provisional
Probab=100.00  E-value=1.4e-98  Score=799.03  Aligned_cols=436  Identities=21%  Similarity=0.305  Sum_probs=351.2

Q ss_pred             eeeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhhhh
Q 036327           38 SIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVLLK  116 (525)
Q Consensus        38 ~~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vK  116 (525)
                      ++..+|+.+|+++|++|++|++||+++||+||+++|+.+|||+++++| |+++|+++|+++  ++|+.+||||||||+||
T Consensus         3 ~~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~--~~g~~~gpL~GvPi~vK   80 (464)
T PRK07042          3 ALHDLSAVELLAGYRARSLSPVEVTEAVLAHIARWEPHLNALYAFDPEAARAAARASTARW--AKGEPLGPLDGVPVTIK   80 (464)
T ss_pred             chhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEcCHHHHHHHHHHHHHHH--HcCCCCCCcCCCEEEEE
Confidence            356789999999999999999999999999999999999999999999 999999999988  77888999999999999


Q ss_pred             hhhcccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCCC
Q 036327          117 DMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCG  196 (525)
Q Consensus       117 D~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~GG  196 (525)
                      |||+++| ++||+||..+.++++.+||++|+|||+|||||+||||||||++     +..|+|++||+|+||||++|+|||
T Consensus        81 D~~~v~G-~~tt~Gs~~~~~~~~~~dA~vV~~Lr~aGAiilGKTn~~Efa~-----~~~~~n~~~G~t~NP~~~~~~~GG  154 (464)
T PRK07042         81 ENIATRG-VPVPLGTAATDLPPAAADAPPAARLREAGAVILAKTTMPDYGM-----LSSGLSSFHGLTRNPWDLDQNPGG  154 (464)
T ss_pred             cccccCC-cccCCCChhhcCCCCCcchHHHHHHHHCCCEEEEecCchHhhc-----CCCCCCCCCCCcCCCCCCCCCCCC
Confidence            9999997 9999999999999999999999999999999999999999999     788999999999999999999999


Q ss_pred             CCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccCCCc
Q 036327          197 SSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGS  276 (525)
Q Consensus       197 SSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~~v  276 (525)
                      |||||||+||+|++++|+|||||||||||||||||||||||+||||+.|..    +.|++|||||+|  +|+++++  ++
T Consensus       155 SSgGsAaaVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~Grv~~~g~~----~~d~~Gp~arsv--~D~a~~l--~v  226 (464)
T PRK07042        155 SSAGAGAAAAAGYGPLHLGTDIGGSVRLPAGWCGIVGLKPSLGRIPIDPPY----TGRCAGPMTRTV--DDAALLM--SV  226 (464)
T ss_pred             ChHHHHHHHHcCCCceeeecCCCCccccchHhhCceeecCCCCccCCCCCc----cccccCCccCCH--HHHHHHH--HH
Confidence            999999999999999999999999999999999999999999999998843    358999999999  9999999  99


Q ss_pred             eeeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeeeece
Q 036327          277 SISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANI  356 (525)
Q Consensus       277 l~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~  356 (525)
                      |+|+|+.|+.+..+    +...|. .+. ..++++||||+.++++...++++|+++++++++.|+++|++|++ ++++..
T Consensus       227 l~g~d~~d~~~~~~----~~~~~~-~~~-~~~~~lrigv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~~~~  299 (464)
T PRK07042        227 LSRPDARDGTSLPP----QDIDWS-DLD-IDVRGLRIGLMLDAGCGLAVDPEVRAAVEAAARRFEAAGAIVEP-VPPFLT  299 (464)
T ss_pred             hcCCCCCCccccCC----CCcChh-hhc-cCcCCCEEEEECcccCCCCCCHHHHHHHHHHHHHHHHCCCEEEE-eCCchh
Confidence            99999988665432    212232 122 35678999999775432358999999999999999999999987 453311


Q ss_pred             eeEeecccccchhhHHHHHHHHHHHHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCCCchhHHHHh
Q 036327          357 DVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAALL  436 (525)
Q Consensus       357 ~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  436 (525)
                      ....    ......+..+....+..+               .   .     +....+.+...........++..++....
T Consensus       300 ~~~~----~~~~~~~~~~~~~~~~~~---------------~---~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~a~  352 (464)
T PRK07042        300 RAML----DGLDRFWRARLWSDLAAL---------------P---P-----ERRAKVLPYIRRWAEGGADLSGVEAVRGF  352 (464)
T ss_pred             HHHH----HHHHHHHHHHHHHHHHHH---------------h---h-----hhhhhcCHHHHHHHHhccCCCHHHHHHHH
Confidence            1110    000001111111111111               0   0     00011222222111222233333333223


Q ss_pred             hhhhcchhhhhhhhhhccccccccCCCC-----------------------ccceeeecCCCCcccCCCCCCCCCcceee
Q 036327          437 NLAKLSRDGFEKAMTVNKLDALVTPRSD-----------------------IAPVLAIGGFPGINVPAGYDTEGVPFGIN  493 (525)
Q Consensus       437 ~~r~~~~~~~~~~~~~~~~DvLl~Pt~~-----------------------~t~~~n~~G~PaisvP~G~~~~GlPvGlQ  493 (525)
                      ..+..+++.+.++|+  ++|+||+||++                       ||.+||++|+|++|||+|+..+|||+|||
T Consensus       353 ~~~~~~~~~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGlQ  430 (464)
T PRK07042        353 NQTFAMRAAAARLFA--EFDYVLSPVAPVPAFPAEWASPTNDPARPFEHIAFTVPWNMSEQPAASINCGFTRDGLPIGLQ  430 (464)
T ss_pred             HHHHHHHHHHHHHHh--cCCEEEcCCCCCCCCCcccccccccchhhhcccccccceeccCCCeEEeecCcCCCCCCeEEE
Confidence            344445677888997  69999999975                       35688999999999999998899999999


Q ss_pred             cCCccCCCcceEeeeeccccceeccCCCCCCC
Q 036327          494 FGGLRGTEPKLIEIAYGFEQATMIRKPPSFKP  525 (525)
Q Consensus       494 ivg~~~~D~~LL~~A~~lE~~~~~~~~P~~~p  525 (525)
                      |+|++|+|++||++|++||++++||++++-.|
T Consensus       431 lvg~~~~D~~lL~~a~~le~~~~~~~~~~~~~  462 (464)
T PRK07042        431 IVGPRFDDLGVLRLAKAFEGWRGPQRPWPEPP  462 (464)
T ss_pred             EecCCCcHHHHHHHHHHHHHhccccccCCCcC
Confidence            99999999999999999999999988755544


No 7  
>PRK06169 putative amidase; Provisional
Probab=100.00  E-value=2.2e-98  Score=797.90  Aligned_cols=434  Identities=22%  Similarity=0.282  Sum_probs=356.7

Q ss_pred             eeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhhhhh
Q 036327           39 IKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVLLKD  117 (525)
Q Consensus        39 ~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD  117 (525)
                      +.++++.+|+++|++|++|++||+++||+||+++|+.+|||+++++| |+++|+++|+++  ++|+.+||||||||+|||
T Consensus         4 ~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~--~~g~~~gpL~GvPi~vKD   81 (466)
T PRK06169          4 LADLTAVELLAAYRRGELSPVEATQAVLDRIDRRDPAVNAFCLVDAEGALAAARASEERW--RRGEPCGLLDGVPVSIKD   81 (466)
T ss_pred             hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCEEEEeCHHHHHHHHHHHHHHH--hcCCCCCCcCCceEEEec
Confidence            56779999999999999999999999999999999999999999999 999999999988  788888999999999999


Q ss_pred             hhcccccCCCCcccceeecccc-ccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCCC
Q 036327          118 MIGTKDKQNTTAGSFALLGSVV-ARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCG  196 (525)
Q Consensus       118 ~~~~~gg~~tt~Gs~~~~~~~~-~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~GG  196 (525)
                      ||+++| ++||+||..++++.| .+||++|++||+||||++||||||||++     +..+.|++||+|+||||++|+|||
T Consensus        82 ~~~v~G-~~tt~Gs~~~~~~~p~~~da~vV~~Lr~aGAii~GKTn~~E~a~-----~~~~~n~~~G~t~NP~~~~~~~GG  155 (466)
T PRK06169         82 IFLTRG-WPTLRGSRAIDADGPWDVDAPAVARLREAGAVLLGKTTTPEFGW-----KGVTDSPLYGITRNPWDTRLTAGG  155 (466)
T ss_pred             ccccCC-cccCccChhhccCCCCCCCHHHHHHHHHCCCEEEEecCchHhhc-----CCCCCCCCCCCCCCCCCCCCCCCc
Confidence            999997 999999999997777 6999999999999999999999999999     788999999999999999999999


Q ss_pred             CCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccCCCc
Q 036327          197 SSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGS  276 (525)
Q Consensus       197 SSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~~v  276 (525)
                      ||||||||||+|++++|+|||||||||+|||||||||||||+||||+.|+.+++ ++|++|||||+|  +|+++++  ++
T Consensus       156 SSgGsAaaVAaG~~~~alGtDtgGSiRiPAa~cGv~G~KPT~G~vs~~g~~~~~-~~d~~Gp~arsv--~D~~~~~--~~  230 (466)
T PRK06169        156 SSGGAAAAVALGMGPLSVGTDGGGSVRIPASFCGTFGFKPTFGRVPLYPASPFG-TLAHVGPMTRTV--ADAALLL--DV  230 (466)
T ss_pred             CcHHHHHHHHcCCCceeeecCCCCcchhchHhhCceeecCCCCccCCCCCCCCc-cccccCCeeCCH--HHHHHHH--HH
Confidence            999999999999999999999999999999999999999999999999998876 899999999999  9999999  99


Q ss_pred             eeeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeeeece
Q 036327          277 SISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANI  356 (525)
Q Consensus       277 l~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~  356 (525)
                      |.|+|+.|+.+...    +...|...+. ...+++||||+.++++. +++++++++++++++.|+++||+|++ ++++ +
T Consensus       231 l~g~~~~d~~~~~~----~~~~~~~~~~-~~~~~lrig~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~~-~  302 (466)
T PRK06169        231 IARPDARDWSALPP----PTTSFLDALD-RDVRGLRIAYSPTLGYV-DVDPEVAALVAQAVQRLAALGARVEE-VDPG-F  302 (466)
T ss_pred             hcCCCCCCCcccCC----CCcchhhhhc-cCCCCCEEEEECCcCCC-CCCHHHHHHHHHHHHHHHHcCCEEEE-eCCC-c
Confidence            99999888655432    2224544333 45688999999776544 58999999999999999999999987 5543 2


Q ss_pred             eeEeecccccchhhHHHHHHHHHHHHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCCCchhHHHHh
Q 036327          357 DVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAALL  436 (525)
Q Consensus       357 ~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  436 (525)
                      +....    .+..++..+....+..+..                       .....+.+...........++..++....
T Consensus       303 ~~~~~----~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~a~  355 (466)
T PRK06169        303 SDPVE----AFHVLWFAGAARLLRALPP-----------------------GQRALLDPGLRRIAERGATYSASDYLDAT  355 (466)
T ss_pred             chHHH----HHHHHHHHHHHHHHHHhhh-----------------------cchhhcCHHHHHHHHhcccCCHHHHHHHH
Confidence            21111    1112222232222211100                       00011222222222222334444444444


Q ss_pred             hhhhcchhhhhhhhhhccccccccCCCC------------------------ccceeeecCCCCcccCCCCCCCCCccee
Q 036327          437 NLAKLSRDGFEKAMTVNKLDALVTPRSD------------------------IAPVLAIGGFPGINVPAGYDTEGVPFGI  492 (525)
Q Consensus       437 ~~r~~~~~~~~~~~~~~~~DvLl~Pt~~------------------------~t~~~n~~G~PaisvP~G~~~~GlPvGl  492 (525)
                      +.|+.+++.+.++|+  ++|+||+||++                        ||.+||++|+|++|||+|+..+|||+||
T Consensus       356 ~~r~~~~~~~~~~~~--~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlPvGl  433 (466)
T PRK06169        356 AVRAALGARMGAFHE--RYDLLLTPTLPIPAFEAGHDVPPGSGLTDWTQWTPFTYPFNLTQQPAASVPCGFTAAGLPVGL  433 (466)
T ss_pred             HHHHHHHHHHHHHHh--cCCEEEeCCCCCCCCCCCccCCCccchhhhhhhhcccccccccCCCeEEEecCcCCCCCceEE
Confidence            455555677889997  69999999975                        3567899999999999999889999999


Q ss_pred             ecCCccCCCcceEeeeeccccceecc-CCCC
Q 036327          493 NFGGLRGTEPKLIEIAYGFEQATMIR-KPPS  522 (525)
Q Consensus       493 Qivg~~~~D~~LL~~A~~lE~~~~~~-~~P~  522 (525)
                      ||+|++|+|++||++|++||++++|. ..|+
T Consensus       434 Qlvg~~~~d~~lL~~a~~le~~~~~~~~~p~  464 (466)
T PRK06169        434 QIVGPRHSDDLVLRVARAYEQALPWPHGAPA  464 (466)
T ss_pred             EEecCCCcHHHHHHHHHHHHhhcCcccCCCC
Confidence            99999999999999999999999886 3344


No 8  
>PRK07486 amidase; Provisional
Probab=100.00  E-value=8.1e-98  Score=797.14  Aligned_cols=437  Identities=23%  Similarity=0.289  Sum_probs=351.6

Q ss_pred             eeeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCc-c-hhccccchhhhhcccCCCceecccCchhhh
Q 036327           38 SIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNP-D-ALYQADKADYERKVKAPGSLVGLRGIPVLL  115 (525)
Q Consensus        38 ~~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~-~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~v  115 (525)
                      ++..+++.+|+++|++|++|++||+++||+||+++|+.+|||+++++ + ++++|+++|+++  ++|+.+||||||||+|
T Consensus         8 ~~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~~na~~~~~~~~~al~~A~~~d~~~--~~g~~~gpL~GvPi~v   85 (484)
T PRK07486          8 PIVRLSAHALSRAIRRRQVSCVEVMRAYLAHIERVNPAVNAIVALRDRDALLAEAAEKDAAL--ARGEYRGWLHGMPQAP   85 (484)
T ss_pred             hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCceEEEeCccHHHHHHHHHHHHHH--hcCCCCCCcCCCeEEE
Confidence            46778999999999999999999999999999999999999999977 4 699999999988  7888899999999999


Q ss_pred             hhhhcccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCC
Q 036327          116 KDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPC  195 (525)
Q Consensus       116 KD~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~G  195 (525)
                      ||||+++| ++||+||..+++++|.+||++|+|||++||||+||||||||++     +..+.|++||+|+||||++|+||
T Consensus        86 KD~~~v~G-~~tt~Gs~~~~~~~~~~dA~vV~rLr~AGaii~GKTn~~Efa~-----~~~~~n~~~G~t~NP~~~~~~pG  159 (484)
T PRK07486         86 KDLAPTKG-IRTTLGSPIFADQVPQEDAIVVERMRAAGAIFIGKTNTPEFGL-----GSHTYNPVYGATRNPYDPSRSAG  159 (484)
T ss_pred             ecccccCC-cCcccccHhhCCCCCCCcHHHHHHHHHCCCeeEEecCchHHhc-----CCCCCCCCCCCCCCCCCCCCCCC
Confidence            99999997 9999999999999999999999999999999999999999999     78899999999999999999999


Q ss_pred             CCCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccce-ecCCCCccccceeeeeeeccceeccCC
Q 036327          196 GSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVI-PVSPRQDTIGDICLSLFISDAKVSSSN  274 (525)
Q Consensus       196 GSSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~-~~~~~~d~~GpmaRsV~~~D~a~~l~~  274 (525)
                      ||||||||+||+|++++|+||||||||||||+||||||||||+||||+.|.+ ++++++|++|||||||  +|+++++  
T Consensus       160 GSSgGsAaaVAaG~~~~aiGtDtgGSIRiPAa~cGvvGlKPT~G~vs~~g~~~~~~~s~d~~Gp~arsv--~D~a~~~--  235 (484)
T PRK07486        160 GSSGGAAAALALRMLPVADGSDMMGSLRNPAAFNNVYGFRPSQGRVPHGPGGDVFVQQLGTEGPMGRTV--EDVALLL--  235 (484)
T ss_pred             cCcHHHHHHHHcCCCceEeecCCCCCeecchhhhCceeecCCCCcccCCCCcccccccccccCCeeCCH--HHHHHHH--
Confidence            9999999999999999999999999999999999999999999999999755 6889999999999999  9999999  


Q ss_pred             CceeeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeeee
Q 036327          275 GSSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIA  354 (525)
Q Consensus       275 ~vl~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p  354 (525)
                      ++|.|+|+.|+.+...    +...|...+. ...+++||||+.+++....++++++++++++++.|+++|++|++ +.++
T Consensus       236 ~~l~g~d~~d~~~~~~----~~~~~~~~~~-~~~~~lrigv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~~  309 (484)
T PRK07486        236 AVQAGYDPRDPLSLAE----DPARFAQPLE-ADLRGKRIAWLGDWGGYLPMEAGVLELCEAALATLRELGCDVEA-ALPA  309 (484)
T ss_pred             HHHhCCCCCCCccccC----CCcchhhHhc-cCCCCCEEEEeCcccCCCCCCHHHHHHHHHHHHHHHHCCCEEEE-eCCC
Confidence            9999999998665422    1113433332 35688999999765432257999999999999999999999976 3433


Q ss_pred             ceeeEeecccccchhhHHHHHHHHHHHHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCCCchhHHH
Q 036327          355 NIDVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAA  434 (525)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  434 (525)
                       ++.. .. ...+......+....+..+               ..   . .  .....+.+...........++...+..
T Consensus       310 -~~~~-~~-~~~~~~~~~~~~~~~~~~~---------------~~---~-~--~~~~~~~~~~~~~~~~g~~~~~~~~~~  365 (484)
T PRK07486        310 -FPPE-RL-WRAWLTLRHFLVGGSLLAL---------------YR---D-P--ARRALLKPEAIWEIEGGLALTAAQVYE  365 (484)
T ss_pred             -cchH-HH-HHHHHHHHHHHHHHhHHHH---------------hc---c-c--cchhhcCHHHHHHHHhccCCCHHHHHH
Confidence             1100 00 0000011001111111000               00   0 0  000112222221112222334333333


Q ss_pred             HhhhhhcchhhhhhhhhhccccccccCCCCc---------------------------cceeeecCCCCcccCCCCCCCC
Q 036327          435 LLNLAKLSRDGFEKAMTVNKLDALVTPRSDI---------------------------APVLAIGGFPGINVPAGYDTEG  487 (525)
Q Consensus       435 ~~~~r~~~~~~~~~~~~~~~~DvLl~Pt~~~---------------------------t~~~n~~G~PaisvP~G~~~~G  487 (525)
                      ..+.|+.+++.+.++|+  ++|+||+||++.                           |.+||++|+|+++||+|++.+|
T Consensus       366 a~~~r~~~~~~~~~~~~--~~D~ll~Pt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~g  443 (484)
T PRK07486        366 ASVIRSAWYQALLRLFE--RYDFLALPTAQVFPFDAEWRWPRAIAGRAMDTYHRWMEVVVPATLAGLPAISVPVGFNAAG  443 (484)
T ss_pred             HHHHHHHHHHHHHHHHh--cCCEEEcCCCCCCCCccccccccccccchhhhhhhhhcccccccccCCCeEEEECCcCCCC
Confidence            34455555777999997  699999999752                           3378999999999999998899


Q ss_pred             CcceeecCCccCCCcceEeeeeccccceecc
Q 036327          488 VPFGINFGGLRGTEPKLIEIAYGFEQATMIR  518 (525)
Q Consensus       488 lPvGlQivg~~~~D~~LL~~A~~lE~~~~~~  518 (525)
                      ||+||||+|++|+|++||++|++||++++|+
T Consensus       444 lPvGlQlvg~~~~D~~lL~~a~~le~~~~~~  474 (484)
T PRK07486        444 LPMGMQIIGPPRADLAVLQLAHAYEQATDWV  474 (484)
T ss_pred             CceEEEEECCCCCHHHHHHHHHHHHhccCcc
Confidence            9999999999999999999999999999885


No 9  
>PRK06170 amidase; Provisional
Probab=100.00  E-value=4.6e-98  Score=800.78  Aligned_cols=442  Identities=22%  Similarity=0.263  Sum_probs=351.1

Q ss_pred             eeeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhhhh
Q 036327           38 SIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVLLK  116 (525)
Q Consensus        38 ~~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vK  116 (525)
                      ++..+|+.+|+++|++|++|++||+++||+||+++|+.+|||+++++| |+++|+++|+++  ++| ..||||||||+||
T Consensus         8 ~~~~~s~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~--~~g-~~gpL~GvPv~VK   84 (490)
T PRK06170          8 EWSFLPATELAAALAAGEVSSVELTDLAIARIERHDGKINAIVVRDFDRARAAARAADAAR--ARG-ERGPLLGIPVTVK   84 (490)
T ss_pred             hhhhcCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEECCHHHHHHHHHHHHHHH--hcC-CCCCcCCceEEEe
Confidence            577889999999999999999999999999999999999999999999 999999999988  667 4699999999999


Q ss_pred             hhhcccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCCC
Q 036327          117 DMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCG  196 (525)
Q Consensus       117 D~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~GG  196 (525)
                      |+|+++| ++||+||..++++++.+||++|+|||+||||++||||||||++     +..+.|++||+|+||||++|+|||
T Consensus        85 D~~~v~G-~~tt~Gs~~~~~~~~~~da~vV~rLr~aGAii~GKTn~~E~~~-----~~~~~n~~~G~t~NP~~~~~~~GG  158 (490)
T PRK06170         85 ESFNVAG-LPTTWGFPDLRDYVPAEDAVAVARLKAAGAVILGKTNVPLGLQ-----DWQSYNEIYGTTNNPWDLARTPGG  158 (490)
T ss_pred             cccccCC-cccCCCChhhcCCCCCccHHHHHHHHHCCCEEEEecCChhhcc-----CCCccCCCCCCCCCCCCCCCCCCC
Confidence            9999997 9999999999999999999999999999999999999999998     778999999999999999999999


Q ss_pred             CCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeeccccccccccccee-----c--CCCCccccceeeeeeeccce
Q 036327          197 SSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIP-----V--SPRQDTIGDICLSLFISDAK  269 (525)
Q Consensus       197 SSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~-----~--~~~~d~~GpmaRsV~~~D~a  269 (525)
                      ||||||||||+|++++|+|||||||||||||||||||||||+||||+.|++|     +  +.++|++|||||||  +|++
T Consensus       159 SSgGsAaAVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~Grv~~~G~~~~~~~~~~~~~~~d~~Gp~arsv--~D~a  236 (490)
T PRK06170        159 SSGGSAAALAAGFGALSIGSDIGGSLRVPAHYCGVYAHKPTLGLVPLRGHIPPPAPALPGQADLAVAGPMARSA--RDLA  236 (490)
T ss_pred             ChHHHHHHHHcCCCceeeecCCCCccccChHHhCceeecCCCCcCcCCCcCCccccccccccccccccCccCCH--HHHH
Confidence            9999999999999999999999999999999999999999999999999988     4  34689999999999  9999


Q ss_pred             eccCCCceeeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeee
Q 036327          270 VSSSNGSSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVD  349 (525)
Q Consensus       270 ~~l~~~vl~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve  349 (525)
                      +++  ++|.|+|+.|+...... ..|...      ...++++|||++.+++.. .++++++++++++++.|+++||+|++
T Consensus       237 ~~l--~~l~g~d~~d~~~~~~~-~~~~~~------~~~~~~lrig~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~  306 (490)
T PRK06170        237 LLL--DVMAGPDPLDGGVAYRL-ALPPAR------HGRLKDFRVLVLDEHPLL-PTDAAVRAAIERLAAALADAGARVVR  306 (490)
T ss_pred             HHH--HHHhCCCcccccccccc-CCCccc------ccccCCCEEEEECCcCCC-CCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence            999  99999998873311000 001000      124578999999876543 68999999999999999999999987


Q ss_pred             eee--eeceeeEeecccccchhhHHHHHHHHHHHHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCC
Q 036327          350 YLE--IANIDVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGI  427 (525)
Q Consensus       350 ~~~--~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (525)
                       ++  +++++....    .+..++..+....+....          ..+...  ..    .....+.............+
T Consensus       307 -~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~----------~~~~~~--~~----~~~~~~~~~~~~~~~~g~~~  365 (490)
T PRK06170        307 -HSPLLPDLAESAR----LYMRLLFAASAARFPPDA----------YADAQA--RA----AGLSADDRSLAAERLRGAVL  365 (490)
T ss_pred             -cCCCCCchHHHHH----HHHHHHHHHHhhccchhH----------HHHhhh--cc----ccccchhHHHHHHHhccccC
Confidence             44  232221110    111111112111110000          000000  00    00001111111111222233


Q ss_pred             CchhHHHHhhhhhcchhhhhhhhhhccccccccCCCCc-------------------------------cceeeecCCCC
Q 036327          428 GNTEKAALLNLAKLSRDGFEKAMTVNKLDALVTPRSDI-------------------------------APVLAIGGFPG  476 (525)
Q Consensus       428 ~~~~~~a~~~~r~~~~~~~~~~~~~~~~DvLl~Pt~~~-------------------------------t~~~n~~G~Pa  476 (525)
                      +..++....+.|+.+++.+.++|+  ++|+||+||++.                               |.+||++|+|+
T Consensus       366 ~~~~~~~a~~~r~~~~~~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~Pa  443 (490)
T PRK06170        366 SHRDWLFADAAREELRAAWRRFFA--EFDVVLCPVTPTPAFPHDHAPDPLERRIDIDGVSYPYWDQLVWAGLATLPGLPA  443 (490)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHh--cCCEEEeCCCCCCCCCCCccccccccccccCCcccchhhhhhhcceecccCCCe
Confidence            434444444555556777999997  699999998752                               34789999999


Q ss_pred             cccCCCCCCCCCcceeecCCccCCCcceEeeeeccccceeccCCCCC
Q 036327          477 INVPAGYDTEGVPFGINFGGLRGTEPKLIEIAYGFEQATMIRKPPSF  523 (525)
Q Consensus       477 isvP~G~~~~GlPvGlQivg~~~~D~~LL~~A~~lE~~~~~~~~P~~  523 (525)
                      +|||+|+..+|||+||||+|++|+|++||++|++||+.++.+++|++
T Consensus       444 isvP~g~~~~GlPvGlQlig~~~~D~~LL~~a~~lE~~~~~~~~~~~  490 (490)
T PRK06170        444 TAIPIGLSATGLPVGVQIVGPALEDRTPLRLAELLEEEFGGFRPPPL  490 (490)
T ss_pred             EEEECCcCCCCCceeEEEecCCCCHHHHHHHHHHHHHhcCCCCCCCC
Confidence            99999998899999999999999999999999999999776677764


No 10 
>PRK07488 indole acetimide hydrolase; Validated
Probab=100.00  E-value=1.2e-97  Score=793.43  Aligned_cols=436  Identities=31%  Similarity=0.434  Sum_probs=359.8

Q ss_pred             eeeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhhhh
Q 036327           38 SIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVLLK  116 (525)
Q Consensus        38 ~~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vK  116 (525)
                      ++.++|+.+|+++|++|++|++||+++||+||++++ .+|||+++++| |+++|+++|+++  ++|+.++ ||||||+||
T Consensus         7 ~~~~~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~-~lna~~~~~~~~al~~A~~~d~~~--~~g~~~g-L~GvPi~vK   82 (472)
T PRK07488          7 DVASLSLTEAAAALRSGRLSCLELVEALLARAAALA-PLNAFTTVDAEGALAAARRIDAQR--AAGAALL-LAGVPIVIK   82 (472)
T ss_pred             hhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-cCCEEEEcCHHHHHHHHHHHHHHH--hcCCCCC-cCceEEEEE
Confidence            467889999999999999999999999999999986 59999999999 999999999988  7787777 999999999


Q ss_pred             hhhcccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCCC
Q 036327          117 DMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCG  196 (525)
Q Consensus       117 D~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~GG  196 (525)
                      |||+++| ++||+||..+++++|.+||++|+|||++|||++||||||||++     +..+.|++||+|+||||++++|||
T Consensus        83 D~~~v~G-~~tt~Gs~~~~~~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~-----~~~~~n~~~G~t~NP~~~~~~~GG  156 (472)
T PRK07488         83 DNINTAG-MPTTAGTPALLGFVPATDAPVVQRLLDAGAVPLGKANMHELAF-----GITSNNGAFGAVRNPYDPARIAGG  156 (472)
T ss_pred             cccccCC-CccCcCChhhccCCCCCCHHHHHHHHHCCCeeeeccChhHHhc-----CCCCCCCCCCCCCCCCCCCCCCCC
Confidence            9999997 9999999999999999999999999999999999999999999     788899999999999999999999


Q ss_pred             CCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccCCCc
Q 036327          197 SSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGS  276 (525)
Q Consensus       197 SSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~~v  276 (525)
                      |||||||+||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||||  +|+++++  ++
T Consensus       157 SSgGsAaaVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~G~vs~~G~~p~~~~~d~~Gp~arsv--~D~a~~~--~v  232 (472)
T PRK07488        157 SSGGTAAAVAARLAPAGLGTDTGGSVRIPAALCGVVGLRPTVGRYSGDGVVPISHTRDTVGPIARSV--ADLALLD--AV  232 (472)
T ss_pred             CchHHHHHHHcCCCceeeecCCCCCeecChHhhCceeeccCCCCCCCCCcccccccCCcccCccCCH--HHHHHHH--HH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999  9999999  99


Q ss_pred             eeeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeeeece
Q 036327          277 SISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANI  356 (525)
Q Consensus       277 l~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~  356 (525)
                      |.|+|+.++         +          .+++++||||+.++++. .++++++++++++++.|+++|++|++ +++|++
T Consensus       233 l~g~d~~~~---------~----------~~~~~lrig~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~~~~  291 (472)
T PRK07488        233 ITGDAALPA---------P----------VALAGLRLGVPAAPFWD-GLDPDVAAVAEAALAKLAAAGVTFVE-LDLPGL  291 (472)
T ss_pred             hcCCCCCCC---------C----------cCcCCCEEEEEcchhcc-CCCHHHHHHHHHHHHHHHHCCCEEEe-eCCcCH
Confidence            999876431         1          13577999999876544 58999999999999999999999987 676654


Q ss_pred             eeEeecccccchhhHHHHHHHHHHHHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCCCc-hhHHHH
Q 036327          357 DVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGN-TEKAAL  435 (525)
Q Consensus       357 ~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~  435 (525)
                      .++..   ..+..+...|+...+.+|+.... .+. .+.+++.... .+   .    ....+........++. ++.+++
T Consensus       292 ~~~~~---~~~~~~~~~e~~~~~~~~~~~~~-~~~-~~~~~~~~~~-~~---~----~~~~~~~~~~~~~~~~~~~~~a~  358 (472)
T PRK07488        292 HELNE---AVGFPIALYEALADLRAYLRENG-AGV-SFEELVARIA-SP---D----VRAIFRDLLDPPQISEDAYRAAL  358 (472)
T ss_pred             HHHhh---hHHHHHHHHHHHHHHHHHHHhcC-CCC-CHHHHHhhcc-CH---H----HHHHHHHHhhcccCCHHHHHHHH
Confidence            33211   11234455677777766654321 111 1222221110 00   0    0111111111112232 344444


Q ss_pred             hhhhhcchhhhhhhhhhccccccccCCCCc---------------------------cceeeecCCCCcccCCCCCCCCC
Q 036327          436 LNLAKLSRDGFEKAMTVNKLDALVTPRSDI---------------------------APVLAIGGFPGINVPAGYDTEGV  488 (525)
Q Consensus       436 ~~~r~~~~~~~~~~~~~~~~DvLl~Pt~~~---------------------------t~~~n~~G~PaisvP~G~~~~Gl  488 (525)
                      +..|+.+++.+.++|+++++|+||+||++.                           |.++|++|+|+||||+|++.+||
T Consensus       359 ~~~r~~~~~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~G~PaisvP~g~~~~gl  438 (472)
T PRK07488        359 DVGRPRLQAWYRQAFARHGLDAILFPTTPLTAPPIGDDDTVILNGAAVPTFARVIRNTDPASNAGLPGLSLPAGLTPHGL  438 (472)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCEEEeCCCCCCCccccccccccccccchhhhhhhhcccccccccCCCeEEEecCCCCCCC
Confidence            442555577799999866799999999752                           45789999999999999988999


Q ss_pred             cceeecCCccCCCcceEeeeeccccceeccCCC
Q 036327          489 PFGINFGGLRGTEPKLIEIAYGFEQATMIRKPP  521 (525)
Q Consensus       489 PvGlQivg~~~~D~~LL~~A~~lE~~~~~~~~P  521 (525)
                      |+||||+|++|+|.+||++|++||+.++++++|
T Consensus       439 PvGlqlig~~~~d~~LL~~A~~lE~~~~~~~~~  471 (472)
T PRK07488        439 PVGLELDGPAGSDRRLLAIGRALERVLGRLPAP  471 (472)
T ss_pred             CeeEEEeCCCCCHHHHHHHHHHHHHhhCCCCCC
Confidence            999999999999999999999999999887766


No 11 
>PRK07487 amidase; Provisional
Probab=100.00  E-value=3.2e-97  Score=788.95  Aligned_cols=425  Identities=22%  Similarity=0.259  Sum_probs=351.8

Q ss_pred             eeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhhhhh
Q 036327           39 IKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVLLKD  117 (525)
Q Consensus        39 ~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD  117 (525)
                      +..+++.+|+++|++|++|++|++++||+||+++|+.+|||+++++| |+++|+++|+++  ++|+.+||||||||+|||
T Consensus         5 ~~~~~~~~l~~~l~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~~--~~g~~~gpL~GvPi~vKD   82 (469)
T PRK07487          5 LWRLSAAELAAAVRSRDVSAREAAEAALARLDAVNPAINAVVDHRPEEALAQADAVDAAR--ARGDDPGPLAGVPVTVKV   82 (469)
T ss_pred             hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHhHHHH--hcCCCCCCcCCCEEEEec
Confidence            56779999999999999999999999999999999999999999999 999999999988  778888999999999999


Q ss_pred             hhcccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCCCC
Q 036327          118 MIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGS  197 (525)
Q Consensus       118 ~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~GGS  197 (525)
                      +|+++| ++||+||..+.++++.+||++|+|||+||||++||||||||++     +..+.|++||+|+||||++|+||||
T Consensus        83 ~~~v~G-~~tt~Gs~~~~~~~~~~da~vV~rLr~aGAii~GKTn~~Efa~-----~~~~~n~~~G~t~NP~d~~~~~GGS  156 (469)
T PRK07487         83 NVDQAG-FATTNGVRLQKDLIAPADSPVVDNLRKAGAVIIGRTNTPAFSY-----RWFTDNPLHGRTLNPWDPSLTPGGS  156 (469)
T ss_pred             ccccCC-CccCcchHHhcCCCCCCchHHHHHHHHCCCEEEEecChhhhhc-----CCCCCCCCCCCCCCCCCCCCCCCcc
Confidence            999997 9999999999999999999999999999999999999999999     7889999999999999999999999


Q ss_pred             CCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeeccccccccccccee----cC-CCCccccceeeeeeeccceecc
Q 036327          198 SSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIP----VS-PRQDTIGDICLSLFISDAKVSS  272 (525)
Q Consensus       198 SgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~----~~-~~~d~~GpmaRsV~~~D~a~~l  272 (525)
                      |||||||||+|++|+|+|||||||||||||||||||||||+||||+.|+++    +. .++|++|||||||  +|+++++
T Consensus       157 SgGsAaAVAaG~~~~alGtDtgGSIRiPAa~cGvvGlKPT~G~is~~g~~~~~~~l~~~~~~~~Gplarsv--~D~a~~~  234 (469)
T PRK07487        157 SGGAAAAVAAGIGAIAHGTDIGGSIRYPAYACGVHGLRPTLGRVPAYNASSPERPIGAQLMSVQGPLARTV--ADLRLAL  234 (469)
T ss_pred             hHHHHHHHHcCCCceeeecCCCCccccchhhcCceeecCCCCccCCCCCCccccccccccccccCCeeCCH--HHHHHHH
Confidence            999999999999999999999999999999999999999999999999873    33 4789999999999  9999999


Q ss_pred             CCCceeeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeee-
Q 036327          273 SNGSSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYL-  351 (525)
Q Consensus       273 ~~~vl~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~-  351 (525)
                        ++|.|+|+.|+.+.+.    |   +    . ...+++|||++.+++.. .++++++++++++++.|+++||+|++ + 
T Consensus       235 --~~l~g~d~~d~~~~~~----~---~----~-~~~~~lrig~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~  298 (469)
T PRK07487        235 --AAMAAPDPRDPWWVPA----P---L----E-GPPRPKRVALCVRPDGL-DVDPEVEAALRDAARRLEDAGWTVEE-VD  298 (469)
T ss_pred             --HHHhCCCCCCCccCCC----C---c----c-CCCCCcEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHCCCEEEe-cC
Confidence              9999999888654321    1   1    0 23578999999876543 68999999999999999999999987 5 


Q ss_pred             eeeceeeEeecccccchhhHHHHHHHHHHHHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCCCchh
Q 036327          352 EIANIDVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTE  431 (525)
Q Consensus       352 ~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (525)
                      ++|+++....    .+..++..|....+.+++.....                   +.   +.............++..+
T Consensus       299 ~~~~~~~~~~----~~~~~~~~e~~~~~~~~~~~~~~-------------------~~---~~~~~~~~~~~~~~~~~~~  352 (469)
T PRK07487        299 DTPPLREAAE----LQERLWLGDGYEALLAAAEAEGD-------------------PG---ALAALRGQRAKARPLDLAG  352 (469)
T ss_pred             CCCchHHHHH----HHHHHHHHHHHHHHHHHHHhhch-------------------hh---hhHHHHHHHHhccCCCHHH
Confidence            5665433211    12233444544444333221100                   00   1111111111222334444


Q ss_pred             HHHHhhhhhcchhhhhhhhhhccccccccCCCCc------------------------cceeeecCCCCcccCCCCCCCC
Q 036327          432 KAALLNLAKLSRDGFEKAMTVNKLDALVTPRSDI------------------------APVLAIGGFPGINVPAGYDTEG  487 (525)
Q Consensus       432 ~~a~~~~r~~~~~~~~~~~~~~~~DvLl~Pt~~~------------------------t~~~n~~G~PaisvP~G~~~~G  487 (525)
                      +...++.|+.+++.+.++|+  ++|+||+||++.                        +.++|++|+|++|||+|+. +|
T Consensus       353 ~~~a~~~r~~~~~~~~~~~~--~~D~ll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~G  429 (469)
T PRK07487        353 YMNALARRATLTRQWQLFFE--DYPLLLMPVSAELPFPDDLDRQGAEGFRRVWEAQLPQIALPFMGLPGLSVPTGLV-GG  429 (469)
T ss_pred             HHHHHHHHHHHHHHHHHHHh--cCCEEEcCCCCCCCCCCCCcCCchhhhhHHHHhhcccccccccCCCeEEEECccC-CC
Confidence            44445555556777999997  699999999862                        2357999999999999986 69


Q ss_pred             CcceeecCCccCCCcceEeeeeccccceecc
Q 036327          488 VPFGINFGGLRGTEPKLIEIAYGFEQATMIR  518 (525)
Q Consensus       488 lPvGlQivg~~~~D~~LL~~A~~lE~~~~~~  518 (525)
                      ||+||||+|++|+|++||++|++||++++..
T Consensus       430 lPvGlQlvg~~~~D~~lL~~a~~lE~~~~~~  460 (469)
T PRK07487        430 VPVGVQLVAGRFREDLCLAAGEAIEARGGPP  460 (469)
T ss_pred             cceeEEEeCCCCCHHHHHHHHHHHHHhhCCC
Confidence            9999999999999999999999999987653


No 12 
>PRK09201 amidase; Provisional
Probab=100.00  E-value=9.3e-97  Score=784.63  Aligned_cols=427  Identities=25%  Similarity=0.312  Sum_probs=348.6

Q ss_pred             eeeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhhhh
Q 036327           38 SIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVLLK  116 (525)
Q Consensus        38 ~~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vK  116 (525)
                      ++.++++.+|+++|++|++|++||+++||+||+++|+.+|||+++++| |+++|+++|+++  ++|+.+||||||||+||
T Consensus         3 ~~~~~~~~~l~~~~~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~d~al~~A~~~d~~~--~~g~~~gpL~GvPi~vK   80 (465)
T PRK09201          3 NLSSLSAAEIAAAVRAGELSARAVAQATLARIARANPQLNAFTAVTAERALAEAARIDAAR--AAGEPLGPLAGVPFAVK   80 (465)
T ss_pred             ccccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEcCHHHHHHHHHHHHHHH--HcCCCCCCcCCceEEEE
Confidence            356789999999999999999999999999999999999999999999 999999999998  78888999999999999


Q ss_pred             hhhcccccCCCCcccceeecccc-ccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCC
Q 036327          117 DMIGTKDKQNTTAGSFALLGSVV-ARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPC  195 (525)
Q Consensus       117 D~~~~~gg~~tt~Gs~~~~~~~~-~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~G  195 (525)
                      |||+++| ++||+||..++++++ .+||++|+|||++|||++||||||||++     +..+.|++||+|+||||++|+||
T Consensus        81 D~~~v~G-~~tt~Gs~~~~~~~~~~~dA~vV~~Lr~aGAii~GKTn~~Efa~-----~~~~~n~~~G~t~NP~~~~~~pG  154 (465)
T PRK09201         81 NLFDVAG-LTTLAGSKINRDRPPATRDATAVRRLEAAGAVLVGALNMDEYAY-----GFTTENSHYGATRNPHDLTRIAG  154 (465)
T ss_pred             eccccCC-cccCcCChhhccCCCCCCChHHHHHHHHCCCEEEEecChHHHhc-----CCCCCCCCCCCCCCCCCCCCCCC
Confidence            9999997 999999999999998 6999999999999999999999999999     78899999999999999999999


Q ss_pred             CCCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccCCC
Q 036327          196 GSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNG  275 (525)
Q Consensus       196 GSSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~~  275 (525)
                      |||||||++||+|++++|+|||||||||||||||||||||||+||||+.|++|+++++|++|||||+|  +|+++++  +
T Consensus       155 GSSgGsAaaVAaG~~~~alGtDtgGSIRiPAa~cGv~G~KPT~Grvs~~G~~~~~~s~d~~Gp~arsv--~D~a~~l--~  230 (465)
T PRK09201        155 GSSGGSAAAVAAGLVPFTLGSDTNGSIRVPASLCGIFGLKPTYGRLSRAGSFPFVASLDHIGPFARSV--ADLALVY--D  230 (465)
T ss_pred             cchHHHHHHHHcCCCceEEecCCCCcchhhhHHhCceeeeCCCCccCCCCCCCcccccCcccCccCCH--HHHHHHH--H
Confidence            99999999999999999999999999999999999999999999999999999999999999999999  9999999  9


Q ss_pred             ceeeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeeeec
Q 036327          276 SSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIAN  355 (525)
Q Consensus       276 vl~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p~  355 (525)
                      +|.|+|+.|+.+...    |...|...+. ...+++||||+.+.+.. .++++++++++++++.|+..  ++   ++++.
T Consensus       231 ~l~g~d~~d~~~~~~----~~~~~~~~~~-~~~~~lrig~~~~~~~~-~~~~~v~~a~~~a~~~L~~~--~~---v~~~~  299 (465)
T PRK09201        231 VLQGPDPQDPFQADR----PAEPTAPLLD-RGAEGLRIAVLGGYFAQ-WADPEARAAVDRVAKALGAT--RE---VELPE  299 (465)
T ss_pred             HhcCCCCCCcccccC----CCcchhhhhc-cCCCCCEEEEECccccC-CCCHHHHHHHHHHHHHccCc--ee---ecCCc
Confidence            999999888655432    2112322222 34678999999776533 58999999999999999543  22   33443


Q ss_pred             eeeEeecccccchhhHHHHHHHHHHHHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCCCchhHHHH
Q 036327          356 IDVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAAL  435 (525)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  435 (525)
                      .+...    ..++.+...|....+..++..                       ....+.+........+..++..++...
T Consensus       300 ~~~~~----~~~~~~~~~e~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~a  352 (465)
T PRK09201        300 AARAR----AAAFIITASEGGNLHLPALRT-----------------------RPQDFDPASRDRLLAGAMLPAAWYVQA  352 (465)
T ss_pred             hhHHH----HHHHHHHHHHHHHHHHHHHhh-----------------------hhhhcCHHHHHHHHhhcCCCHHHHHHH
Confidence            22111    111223334443332222110                       001122222222222223444444444


Q ss_pred             hhhhhcchhhhhhhhhhccccccccCCCC--------------------------ccceeeecCCCCcccCCCCCCCCCc
Q 036327          436 LNLAKLSRDGFEKAMTVNKLDALVTPRSD--------------------------IAPVLAIGGFPGINVPAGYDTEGVP  489 (525)
Q Consensus       436 ~~~r~~~~~~~~~~~~~~~~DvLl~Pt~~--------------------------~t~~~n~~G~PaisvP~G~~~~GlP  489 (525)
                      .+.|+.+++.+.++|+  ++|+||+||++                          ||.+||++|+|++|||+|+ .+|||
T Consensus       353 ~~~r~~~~~~~~~~~~--~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlP  429 (465)
T PRK09201        353 QRFRRWFRQAVLELFE--HVDVLIAPATPCSAPLIGQETMRIDGVELPVRANLGILTQPISFIGLPVVAVPLRT-PGGLP  429 (465)
T ss_pred             HHHHHHHHHHHHHHHh--cCCEEEeCCCCCCCCcccccccccCcchhhhhhhHHHhCccccccCCCeEEEeCCC-CCCcC
Confidence            5556666777999997  69999999864                          3568899999999999996 46999


Q ss_pred             ceeecCCccCCCcceEeeeeccccceec
Q 036327          490 FGINFGGLRGTEPKLIEIAYGFEQATMI  517 (525)
Q Consensus       490 vGlQivg~~~~D~~LL~~A~~lE~~~~~  517 (525)
                      +||||+|++|+|++||++|+.||++...
T Consensus       430 vGlQivg~~~~D~~lL~~A~~le~~~~~  457 (465)
T PRK09201        430 IGVQLIAAPWREDLALRAAAALEQQGVA  457 (465)
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHhhCcc
Confidence            9999999999999999999999997643


No 13 
>PRK06565 amidase; Validated
Probab=100.00  E-value=3.2e-96  Score=776.70  Aligned_cols=474  Identities=24%  Similarity=0.323  Sum_probs=377.6

Q ss_pred             eeeeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhcc-----ccceeeeEeCcchhccccchhhhhcccCCCceecccCc
Q 036327           37 FSIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLN-----PVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGI  111 (525)
Q Consensus        37 ~~~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~-----~~lna~~~~~~~al~~A~~~d~~~~~~~g~~~gpL~Gv  111 (525)
                      |++.++|+.+|+++|++|++|++||+++||+||+++|     +.+||++.++++|+++|+++|+++  ++|+.+||||||
T Consensus         2 ~~i~~~si~~L~~~l~~g~~t~~elv~a~l~ri~~~~~~~~~~~lna~~~~~~~Al~~A~~~D~~~--~~g~~~gpL~GI   79 (566)
T PRK06565          2 IEVTEVSIAELRAALESGRTTAVELVKAYLARIDAYDGPATGTALNAVVVRNPDALKEAEASDARR--ARGETLGPLDGI   79 (566)
T ss_pred             CccccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccCcceEEEEecCHHHHHHHHHHHHHH--hcCCCCCCCCCC
Confidence            6788999999999999999999999999999999999     689999998888999999999998  788888999999


Q ss_pred             hhhhhhhhcccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeee
Q 036327          112 PVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLS  191 (525)
Q Consensus       112 Pi~vKD~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~  191 (525)
                      ||+|||||+++| ++||+||..+.++++.+||++|++||+||||++||||||||++     +..+ |.+||+|+||||+.
T Consensus        80 Pi~vKD~~~v~G-~~TT~Gs~~l~~~~~~~DA~vV~rLr~AGAIilGKTnm~E~a~-----g~~~-~~~~G~t~NP~n~~  152 (566)
T PRK06565         80 PYTAKDSYLVKG-LTAASGSPAFKDLVAQRDAFTIERLRAAGAICLGKTNMPPMAN-----GGMQ-RGVYGRAESPYNAA  152 (566)
T ss_pred             EEEEecccccCC-CCcccccHhhcCCCCCCCHHHHHHHHHCCCEEEEecccchhhh-----CCCC-CCCCCCcCCCcCcc
Confidence            999999999997 9999999999999999999999999999999999999999997     3434 67999999999999


Q ss_pred             c----CCCCCCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeecc
Q 036327          192 A----DPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISD  267 (525)
Q Consensus       192 ~----~~GGSSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D  267 (525)
                      |    +|||||||||++||+|++++|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||||  +|
T Consensus       153 ~~~~~~pGGSSgGsAaAVAag~~~~alGtDtgGSIR~PAa~~GivG~KPT~G~vs~~Gv~p~~~s~D~vGp~aRsV--~D  230 (566)
T PRK06565        153 YLTAPFASGSSNGAGTATAASFSAFGLAEETWSSGRGPASNNGLCAYTPSRGVISVRGNWPLTPTMDVVVPYARTM--AD  230 (566)
T ss_pred             cCcCCCCCCCCccHHHHHhCCCCcceeecCCCCchhhhHHHcCeeEEeCCCCccCCCCcccccCCCCeecceeCCH--HH
Confidence            9    59999999999999999999999999999999999999999999999999999999999999999999999  99


Q ss_pred             ceeccCCCceeeeecCCccc---------ccceeeeecchHHHHH-HHhccCCceeeeeeCCcccc--------------
Q 036327          268 AKVSSSNGSSISVDYNDPAT---------KAASYYIPYGGYKQFL-KLYGLKGKRLGIVRNPFFNF--------------  323 (525)
Q Consensus       268 ~a~~l~~~vl~g~d~~d~~~---------~~~~~~~p~~~~~~~~-~~~~~~~lrIGv~~~~~~~~--------------  323 (525)
                      +++++  ++|.|.|+.|...         .+.....+..+|...+ ....++++||||+..+++..              
T Consensus       231 ~a~~l--~vl~g~D~~d~~~~~~~~~~~~~p~~~~~~~~~y~~~~~~~~~l~g~RIGv~~~~~~~~~~~~~~~~~~~~~~  308 (566)
T PRK06565        231 LLEVL--DVIVADDPDTRGDLWRLQPWVPIPKASEVRPASYLALAAGADALKGKRFGVPRMYINADPDAGTSENPGIGGP  308 (566)
T ss_pred             HHHHH--HHhcCCCcccccchhhccccccCccccccCccchhhhhccccCCCCCEEEEEChhhccccccccccccccccc
Confidence            99999  9999999877421         0100111222455432 12467899999987654321              


Q ss_pred             -----CCcchhHHHHHHHHHHHhhccceeeeeeeeeceeeEeecccc----cchhhHHHHHH---------HHHHHHHHH
Q 036327          324 -----DKGSALTQAFNYHLQTLRQQGAVLVDYLEIANIDVILNATAS----GEATALVAEFK---------LALNAYVKE  385 (525)
Q Consensus       324 -----~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~~~~~~~~~~----~~~~~~~~e~~---------~~~~~~l~~  385 (525)
                           .++++|.++++++++.|+++|++|++ +++|.+.........    .....+.+||.         ..++.||..
T Consensus       309 ~~~~~~~~~~v~~~~~~a~~~L~~~Ga~vv~-v~~p~~~~~e~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~yL~~  387 (566)
T PRK06565        309 TGQRIHTRPSVIDLWEAARRALEAAGAEVIE-VDFPLVSNCEGDRPGAPTVFNRGLVSPEFLHDELWELSGWAFDDFLRA  387 (566)
T ss_pred             cccccCCCHHHHHHHHHHHHHHHHCCCEEEE-eecCCccccccccccccccccccccchhhhhccccchhHHHHHHHHHh
Confidence                 14689999999999999999999997 688754321110000    11123445664         348899988


Q ss_pred             HhhchhhhHHHHHhhcccccchH-----HHHHh--hhhhhhhhhhc--c--CCCchhHHHHhhhhhcchhhhhhhhhhcc
Q 036327          386 LVASPVRSLAEVIAFNEKFSDIE-----KIEEF--GQDIFLAAQAT--N--GIGNTEKAALLNLAKLSRDGFEKAMTVNK  454 (525)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~--~--~~~~~~~~a~~~~r~~~~~~~~~~~~~~~  454 (525)
                      .....++++.++.. +..++..+     ....+  .+..+......  .  .....+.+.++.++...+..++++|++++
T Consensus       388 ~~~~~~~sl~di~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~~~~~  466 (566)
T PRK06565        388 NGDPKLNRLADVDG-PQIFPHDPGTLPNREGDLAAGMDEYVNMAKRGLKSWDQIPTLPDGLRGLEKTRKLDLEDWMDGLG  466 (566)
T ss_pred             cCCCCCCCHHHhhh-hhcccCcccccccchhhhhhhHHHHHHHhhcCCCChhhccchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            77667788888876 32221100     00001  11111111000  0  11122334444444443446888999999


Q ss_pred             ccccccCCCCccc--------------------------eeeecCCCCcccCCCCC-CCCCcceeecCCccCCCcceEee
Q 036327          455 LDALVTPRSDIAP--------------------------VLAIGGFPGINVPAGYD-TEGVPFGINFGGLRGTEPKLIEI  507 (525)
Q Consensus       455 ~DvLl~Pt~~~t~--------------------------~~n~~G~PaisvP~G~~-~~GlPvGlQivg~~~~D~~LL~~  507 (525)
                      +|+||+|+.+...                          ..+++|+|+||||+|+. ..||||||+|+|++|+|.+||++
T Consensus       467 lDalv~P~~~~~~~~~~~~~~~~~~~~~~~g~~~~ng~~a~~~~G~P~vtVP~G~~~~~G~PvGl~~~G~a~~e~~Ll~~  546 (566)
T PRK06565        467 LDAVLFPTVADVGPADADVNPASADIAWSNGVWVANGNLAIRHLGVPTVTVPMGVMADIGMPVGLTFAGRAYDDNALLRF  546 (566)
T ss_pred             CCEEEeCCCCCCccccccccchhhhhccccCcccccchhhHHhcCCCeeEeeccccCCCCCCeeEEeecCCcchHHHHHH
Confidence            9999999764321                          24889999999999998 47999999999999999999999


Q ss_pred             eeccccceeccCCCCCCC
Q 036327          508 AYGFEQATMIRKPPSFKP  525 (525)
Q Consensus       508 A~~lE~~~~~~~~P~~~p  525 (525)
                      |++||++.+.|.+|+.+|
T Consensus       547 A~a~E~~~~~r~~p~~~~  564 (566)
T PRK06565        547 AAAFEATGSRRMVPPRTP  564 (566)
T ss_pred             HHHHHHHhcCCCCCCCCC
Confidence            999999999999998877


No 14 
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed
Probab=100.00  E-value=1.6e-96  Score=783.37  Aligned_cols=429  Identities=31%  Similarity=0.444  Sum_probs=346.0

Q ss_pred             hhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhhhhhhhcccccCCCCc
Q 036327           51 FRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTA  129 (525)
Q Consensus        51 ~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD~~~~~gg~~tt~  129 (525)
                      |++|++|++||+++||+||+++|+.+|||+++++| ++++|+++|+++  ++|+ +||||||||+|||||+++| ++||+
T Consensus         1 i~~g~~t~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~--~~g~-~gpL~GvPv~vKD~~~v~G-~~tt~   76 (459)
T PRK00012          1 LKNKEISAVELTQAYLDRIEEVDPKLNAFITVTEEEALAQAKAADAKL--AAGE-AGPLAGIPIAIKDNICTKG-IRTTC   76 (459)
T ss_pred             CCCCcCCHHHHHHHHHHHHHHhcccCCeEEEeCHHHHHHHHHHHHHHH--hcCC-CCccCCeEEEEecccccCC-CccCc
Confidence            57899999999999999999999999999999999 999999999988  6777 8999999999999999997 99999


Q ss_pred             ccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCCCCCCCCceeeeeee
Q 036327          130 GSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANL  209 (525)
Q Consensus       130 Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~  209 (525)
                      ||..+++++|.+|+++|+|||+||||++||||||||++     +..++|++||+|+||||++|+|||||||||||||+|+
T Consensus        77 Gs~~~~~~~~~~da~vV~~Lr~aGAiilGkTn~~E~~~-----~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~  151 (459)
T PRK00012         77 ASKILENYVPPYDATVVEKLKAAGAVILGKTNMDEFAM-----GSSTENSAFGPTKNPWDLERVPGGSSGGSAAAVAAGL  151 (459)
T ss_pred             cCHhhccCCCCcchHHHHHHHHCCCEEEeeccchhhhc-----CCCCCCCCCCCcCCCCCCCCCCCCCcHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999     7889999999999999999999999999999999999


Q ss_pred             eeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccCCCceeeeecCCccccc
Q 036327          210 VAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGSSISVDYNDPATKA  289 (525)
Q Consensus       210 ~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~~vl~g~d~~d~~~~~  289 (525)
                      +|+|+||||||||||||+||||||||||+|+||+.|++|+++++|++|||||||  +|+++++  ++|.|+|+.|+.+..
T Consensus       152 ~~~alGtDtgGSiRiPAa~cGvvG~KPT~G~vp~~G~~~~~~~~d~~Gp~arsv--~D~a~~~--~~l~g~d~~d~~~~~  227 (459)
T PRK00012        152 APAALGSDTGGSIRQPAAFCGVVGLKPTYGRVSRYGLIAFASSLDQIGPFARTV--EDAALLL--NAIAGHDPKDSTSAD  227 (459)
T ss_pred             CceEEeeCCCCccchhHHHcCceeecCCCCcccCCCCcCcccCCCcccCccCCH--HHHHHHH--HHHhCCCCCCccccc
Confidence            999999999999999999999999999999999999999999999999999999  9999999  999999988865442


Q ss_pred             ceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeeeeceeeEeecccccchh
Q 036327          290 ASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANIDVILNATASGEAT  369 (525)
Q Consensus       290 ~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~~~~~~~~~~~~~~  369 (525)
                      .    +..+|...+. ...+++||||+.+.+.. .++++++++++++++.|+++||+|++ +++|.+.....    .+..
T Consensus       228 ~----~~~~~~~~~~-~~~~~lrig~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~~~~~~~~~----~~~~  296 (459)
T PRK00012        228 V----PVPDYTAALG-KDIKGLKIGVPKEYFGE-GLDPEVKEAVEAAIKKLEDLGAEIVE-VSLPHTKYALP----AYYI  296 (459)
T ss_pred             C----CCCchhhhhc-ccccccEEEEEcccccc-cCCHHHHHHHHHHHHHHHHCCCEEEE-eCCCchHHHHH----HHHH
Confidence            2    2223544333 35688999999876543 58999999999999999999999987 67665433221    1233


Q ss_pred             hHHHHHHHHHHHHHHHHhh---chhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhc-----cCCCchhHHHHhhhhhc
Q 036327          370 ALVAEFKLALNAYVKELVA---SPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQAT-----NGIGNTEKAALLNLAKL  441 (525)
Q Consensus       370 ~~~~e~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~a~~~~r~~  441 (525)
                      ++..|+...+..|......   ....++.+++....       ...+++.........     ......++....+.|..
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~  369 (459)
T PRK00012        297 IAPAEASSNLARYDGVRYGYRAEDAKDLEEMYEKTR-------SEGFGEEVKRRIMLGTYVLSAGYYDAYYLKAQKVRTL  369 (459)
T ss_pred             HHHHHHHHHHhhcccccccccccccccHHHHHhhhh-------hhccCHHHHHHHHhCcchhccccchHHHHHHHHHHHH
Confidence            4455655555443211000   00111222221100       011222221111111     11112223333444555


Q ss_pred             chhhhhhhhhhccccccccCCCC---------------------ccceeeecCCCCcccCCCCCCCCCcceeecCCccCC
Q 036327          442 SRDGFEKAMTVNKLDALVTPRSD---------------------IAPVLAIGGFPGINVPAGYDTEGVPFGINFGGLRGT  500 (525)
Q Consensus       442 ~~~~~~~~~~~~~~DvLl~Pt~~---------------------~t~~~n~~G~PaisvP~G~~~~GlPvGlQivg~~~~  500 (525)
                      +++.+.++|+  ++|+||+||++                     ||.+||++|+|+||||+|+..+|+|+||||+|++|+
T Consensus       370 ~~~~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~n~~G~PaisvP~g~~~~glPvGlqlvg~~~~  447 (459)
T PRK00012        370 IKQDFEKAFE--KVDVILGPTAPTTAFKIGEKTDDPLAMYLSDIFTVPANLAGLPAISVPAGFDDGGLPVGLQLIGKYFD  447 (459)
T ss_pred             HHHHHHHHHh--cCCEEEeCCCCCCCcccccccCchHhhhccccccccccccCCCcEEEecCCCCCCCCEEEEEECCCCc
Confidence            5677999997  59999999975                     356799999999999999998899999999999999


Q ss_pred             CcceEeeeeccc
Q 036327          501 EPKLIEIAYGFE  512 (525)
Q Consensus       501 D~~LL~~A~~lE  512 (525)
                      |++||++|++||
T Consensus       448 D~~LL~~a~~~E  459 (459)
T PRK00012        448 EETLLNVAYAFE  459 (459)
T ss_pred             hHHHHHHHHHhC
Confidence            999999999987


No 15 
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.
Probab=100.00  E-value=1.4e-96  Score=783.86  Aligned_cols=430  Identities=29%  Similarity=0.409  Sum_probs=345.9

Q ss_pred             hhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhhhhhhhcccccC
Q 036327           47 IQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQ  125 (525)
Q Consensus        47 l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD~~~~~gg~  125 (525)
                      |+++|++|++||+||+++||+||+++|+.+|||+++++| |+++|+++|+++  +     ||||||||+|||+|+++| +
T Consensus         1 l~~~~~~g~~s~~ev~~~~l~ri~~~~~~~na~~~~~~~~al~~A~~~d~~~--~-----gpL~GvPv~vKD~~~v~G-~   72 (460)
T TIGR00132         1 LRQLLKKKEISIKEVLEASLDRIEANKDKINAFLEVTVEKALKQAKKLDKAI--L-----TPLAGIPIAVKDNISTKG-I   72 (460)
T ss_pred             ChhHHhcCCCCHHHHHHHHHHHHHHhcccCCeEEEcCHHHHHHHHHHHHHhc--c-----CCcCCcEEEEecccccCC-c
Confidence            578999999999999999999999999999999999999 999999999876  3     799999999999999997 9


Q ss_pred             CCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCCCCCCCCceee
Q 036327          126 NTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISV  205 (525)
Q Consensus       126 ~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaV  205 (525)
                      +||+||..+++++|.+||++|+|||++|||++||||||||++     +..+.|++||+|+||||++|+||||||||||+|
T Consensus        73 ~tt~Gs~~~~~~~~~~dA~vV~~L~~aGAii~GKTn~~E~a~-----~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaV  147 (460)
T TIGR00132        73 VTTCASKILENYIPPYDATVIERLKQAGALIIGKTNMDEFAM-----GSSTETSAFGPTKNPWNLDRVPGGSSGGSAAAV  147 (460)
T ss_pred             ccCcCChhhccCCCCCchHHHHHHHHCCCEEEEEechhHHhc-----CCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHH
Confidence            999999999999999999999999999999999999999999     788999999999999999999999999999999


Q ss_pred             eeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccCCCceeeeecCCc
Q 036327          206 AANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGSSISVDYNDP  285 (525)
Q Consensus       206 Aag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~~vl~g~d~~d~  285 (525)
                      |+|++|+|+|||||||||+||+||||||||||+|+||+.|++|+++++|++|||||||  +|+++++  ++|.|+|+.|+
T Consensus       148 AaG~~~~alGtDtgGSIRiPAa~cGv~G~KPT~G~vs~~G~~~~~~~~d~~Gp~arsv--~D~a~~~--~~l~g~~~~d~  223 (460)
T TIGR00132       148 AADLAPFSLGSDTGGSIRQPASFCGVVGFKPTYGRVSRYGLVAYASSLDQIGPFARTV--EDIALLL--DVISGHDKRDS  223 (460)
T ss_pred             HcCCCCeEeecCCCCcchhhhHhcCceeECCCCCcCCCCCCcCcccCCCcccCeeCCH--HHHHHHH--HHHcCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999  9999999  99999999886


Q ss_pred             ccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeeeeceeeEeecccc
Q 036327          286 ATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANIDVILNATAS  365 (525)
Q Consensus       286 ~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~~~~~~~~~~  365 (525)
                      .+...    |..+|...+. ...+++||||+.+.+.  .++++++++++++++.|+++||+|++ +++|.++....    
T Consensus       224 ~~~~~----~~~~~~~~~~-~~~~~lrig~~~~~~~--~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~p~~~~~~~----  291 (460)
T TIGR00132       224 TSAKV----PDPEFFEELK-KDLKGLKVGVVKEFSE--EMDKEVQEKFENALEVLEELGAEIVE-VSFPHVKYALP----  291 (460)
T ss_pred             cccCC----Cccchhhhhh-cccCCCEEEEECcccc--cCCHHHHHHHHHHHHHHHHCCCEEEE-eCCCcHHHHHH----
Confidence            55432    2223544333 3568899999977553  37999999999999999999999987 67765433211    


Q ss_pred             cchhhHHHHHHHHHHHHHHHHhhc---hhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhcc-----CCCchhHHHHhh
Q 036327          366 GEATALVAEFKLALNAYVKELVAS---PVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATN-----GIGNTEKAALLN  437 (525)
Q Consensus       366 ~~~~~~~~e~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~a~~~  437 (525)
                      .+..++..|....+..|.......   ...++.+++....       ...+++..........     .....++....+
T Consensus       292 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~  364 (460)
T TIGR00132       292 IYYIISPSEASSNLARYDGIRYGYRIEEPNSLKELYAKTR-------AEGFGEEVKRRIMLGNYALSAGYYDKYYLKAQK  364 (460)
T ss_pred             HHHHHHHHHHHHHHhccccccccccccccccHHHHHhhcc-------hhhcCHHHHHHHHccccccccchhhHHHHHHHH
Confidence            123344455554444332110000   0111222222110       0112222111111111     111122333344


Q ss_pred             hhhcchhhhhhhhhhccccccccCCCC---------------------ccceeeecCCCCcccCCCCCCCCCcceeecCC
Q 036327          438 LAKLSRDGFEKAMTVNKLDALVTPRSD---------------------IAPVLAIGGFPGINVPAGYDTEGVPFGINFGG  496 (525)
Q Consensus       438 ~r~~~~~~~~~~~~~~~~DvLl~Pt~~---------------------~t~~~n~~G~PaisvP~G~~~~GlPvGlQivg  496 (525)
                      .|..+++.+.++|+  ++|+||+||++                     +|.+||++|+|++|||+|+..+|+|+||||+|
T Consensus       365 ~r~~~~~~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~~GlPvGlqlig  442 (460)
T TIGR00132       365 VRTLIIDDFLKLFE--EVDVIVSPTAPTLPFKIGEKLDDPLEMYLSDILTVPANLAGLPAISVPCGVKEKGLPIGLQIIG  442 (460)
T ss_pred             HHHHHHHHHHHHHh--cCCEEEeCCCCCCCCCcccccCchHhhhcccceeccccccCCCcEEEecCcCCCCCCeeEEEEC
Confidence            45555677999997  69999999975                     35679999999999999998899999999999


Q ss_pred             ccCCCcceEeeeeccccc
Q 036327          497 LRGTEPKLIEIAYGFEQA  514 (525)
Q Consensus       497 ~~~~D~~LL~~A~~lE~~  514 (525)
                      ++|+|++||++|++||+.
T Consensus       443 ~~~~D~~lL~~A~~le~~  460 (460)
T TIGR00132       443 KCFDDKTLLQVSYAFEQA  460 (460)
T ss_pred             CCCchHHHHHHHHHHhhC
Confidence            999999999999999974


No 16 
>TIGR02715 amido_AtzE amidohydrolase, AtzE family. Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.
Probab=100.00  E-value=2.1e-96  Score=779.93  Aligned_cols=419  Identities=24%  Similarity=0.311  Sum_probs=342.4

Q ss_pred             chhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhhhhhhhcc
Q 036327           43 TIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGT  121 (525)
Q Consensus        43 s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD~~~~  121 (525)
                      |+.+|+++|++|++|++||+++||+||+++|+.+|||+++++| |+++|+++|+++  ++|+.+||||||||+|||||++
T Consensus         1 ~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~--~~g~~~gpL~GvPv~vKD~~~v   78 (452)
T TIGR02715         1 SIVEIAGAIRSGRVSARAVAEATLARINQADGGLNAFTAVTAERALADAARIDADL--AAGSPLGPLAGVPFAVKNLFDV   78 (452)
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCccEEEEeCHHHHHHHHHHHHHHH--HCCCCCCCcCCCeEEEEecccc
Confidence            5789999999999999999999999999999999999999999 999999999998  7788889999999999999999


Q ss_pred             cccCCCCcccceeecccc-ccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCCCCCCC
Q 036327          122 KDKQNTTAGSFALLGSVV-ARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSG  200 (525)
Q Consensus       122 ~gg~~tt~Gs~~~~~~~~-~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgG  200 (525)
                      +| ++||+||..+.+++| .+||++|+|||+||||++||||||||++     +..+.|++||+|+||||++|+|||||||
T Consensus        79 ~G-~~tt~Gs~~~~~~~p~~~dA~vV~rL~~AGAii~GkTn~~Ef~~-----~~~~~n~~~G~t~NP~~~~~~~GGSSgG  152 (452)
T TIGR02715        79 AG-LTTLAGAKINRDLAPAKRDATLVQRLSAAGAVLVGALNMDEFAY-----GFTTENAHYGPTRNPHDLTRIAGGSSGG  152 (452)
T ss_pred             CC-ceeCcCChhhccCCCCCCCHHHHHHHHHCCCEEEEeccCHhhhc-----CCCCCCCCCCCCCCCCCCCCCCCcchHH
Confidence            97 999999999999988 6999999999999999999999999999     7889999999999999999999999999


Q ss_pred             CceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccCCCceeee
Q 036327          201 PAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGSSISV  280 (525)
Q Consensus       201 saaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~~vl~g~  280 (525)
                      |||+||+|++++|+|||||||||||||||||||||||+||||+.|++|+++++|++|||||||  +|+++++  ++|.|+
T Consensus       153 sAaaVAag~~~~alGtDtgGSiRiPAa~cGv~GlKPT~Grvs~~G~~~~~~s~d~~Gp~arsv--~D~a~~l--~~l~g~  228 (452)
T TIGR02715       153 SAAAVAAGLVPFSLGSDTNGSIRVPASLCGVFGLKPTYGRLSRQGVFPFVASLDHVGPFARSV--EDLALAY--DVMQGP  228 (452)
T ss_pred             HHHHHHCCCCceEEeeCCCCcchhhHHHhCceeeeCCCCCccCCCCCCCccccCcccCeeCCH--HHHHHHH--HHhcCC
Confidence            999999999999999999999999999999999999999999999999999999999999999  9999999  999999


Q ss_pred             ecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeeeeceeeEe
Q 036327          281 DYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANIDVIL  360 (525)
Q Consensus       281 d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~~~~~  360 (525)
                      |+.|+.+...    |...|...+. ..++++||||+.+.+.. .++++++++++++++.|+.+  .+   +++|..+...
T Consensus       229 ~~~d~~~~~~----p~~~~~~~~~-~~~~~lrig~~~~~~~~-~~~~~v~~a~~~a~~~L~~~--~~---v~~~~~~~~~  297 (452)
T TIGR02715       229 DPQDPFCTDR----PAEPTVPLLP-AGISGLRIAVLGGWFQQ-NADPEALAAVGRVAKALGAT--TI---VELPDAERAR  297 (452)
T ss_pred             CCCCcccccC----CCcchhhhhh-cCCCCCEEEEECccccC-CCCHHHHHHHHHHHHhcCCe--ee---ecCCchHHHH
Confidence            9988655432    2222322222 35688999999765533 58999999999999999653  22   2334322111


Q ss_pred             ecccccchhhHHHHHHHHHHHHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCCCchhHHHHhhhhh
Q 036327          361 NATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAALLNLAK  440 (525)
Q Consensus       361 ~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~  440 (525)
                          ..++.++..|....+.+++..                       ....+++...........++..++...++.|+
T Consensus       298 ----~~~~~~~~~e~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~  350 (452)
T TIGR02715       298 ----AAAFVITASEGGNLHLDALRT-----------------------RPQDFDPATRDRLLAGALLPASWYAQAQRFRH  350 (452)
T ss_pred             ----HHHHHHHHHHHHHHHHHHhhh-----------------------chhhcCHHHHHHHHcccCCCHHHHHHHHHHHH
Confidence                111223333433322222110                       00112222221222222234444444455566


Q ss_pred             cchhhhhhhhhhccccccccCCCC--------------------------ccceeeecCCCCcccCCCCCCCCCcceeec
Q 036327          441 LSRDGFEKAMTVNKLDALVTPRSD--------------------------IAPVLAIGGFPGINVPAGYDTEGVPFGINF  494 (525)
Q Consensus       441 ~~~~~~~~~~~~~~~DvLl~Pt~~--------------------------~t~~~n~~G~PaisvP~G~~~~GlPvGlQi  494 (525)
                      .+++.+.++|+  ++|+||+||++                          ||.+||++|+|++|||+|+. +|||+||||
T Consensus       351 ~~~~~~~~~~~--~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlQi  427 (452)
T TIGR02715       351 WFRDAIRELFQ--RVDVLIAPATPCSAPLIGQETMIIDGVPVPVRANLGIFTQPISFAGLPVLAAPLPRP-GRLPIGVQL  427 (452)
T ss_pred             HHHHHHHHHHh--cCCEEEeCCCCCCCCcCcccccccCccchhhhhhHHhcCccchhcCCCeEEEeCCCC-CCCCeEEEE
Confidence            66778999997  69999999874                          35678999999999999984 899999999


Q ss_pred             CCccCCCcceEeeeeccccc
Q 036327          495 GGLRGTEPKLIEIAYGFEQA  514 (525)
Q Consensus       495 vg~~~~D~~LL~~A~~lE~~  514 (525)
                      +|++|+|++||++|++||+.
T Consensus       428 vg~~~~D~~lL~~a~~le~~  447 (452)
T TIGR02715       428 IAAPWREDLCLRAAAVLERQ  447 (452)
T ss_pred             ECCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999985


No 17 
>PRK06102 hypothetical protein; Provisional
Probab=100.00  E-value=2.2e-96  Score=779.15  Aligned_cols=419  Identities=25%  Similarity=0.348  Sum_probs=343.5

Q ss_pred             eeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhhhhh
Q 036327           39 IKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVLLKD  117 (525)
Q Consensus        39 ~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD  117 (525)
                      +..+++.+|+++|++|++|++|++++||+||+++|+ +|||+++++| |+++|+++|+++  ++|+.+||||||||+|||
T Consensus         3 ~~~~~~~~l~~~l~~g~~s~~ev~~~~l~ri~~~~~-~na~~~~~~~~al~~A~~~d~~~--~~g~~~gpL~GvPi~vKD   79 (452)
T PRK06102          3 TGAKSAAQLAVLIQSGALDPVQVAEQALDAIASYAD-QAVFISLTEERAMREAEASSARW--RAGRSLGLLDGIPIAWKD   79 (452)
T ss_pred             ccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCC-CCEEEEeCHHHHHHHHHHHHHHH--HCCCCCCCcCCCeEEEEe
Confidence            456789999999999999999999999999999986 8999999999 999999999998  788889999999999999


Q ss_pred             hhcccccCCCCcccceeecccc-ccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceee--ecCC
Q 036327          118 MIGTKDKQNTTAGSFALLGSVV-ARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVL--SADP  194 (525)
Q Consensus       118 ~~~~~gg~~tt~Gs~~~~~~~~-~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~--~~~~  194 (525)
                      ||+++| ++||+||..++++++ .+||++|+|||++|||++||||||||++     +..+.|++||+|+||||+  +|+|
T Consensus        80 ~~~v~G-~~tt~Gs~~~~~~~~~~~dA~vV~rL~~aGAii~GKTn~~E~a~-----~~~~~n~~~G~t~NP~~~~~~~~~  153 (452)
T PRK06102         80 LFDVAG-SVTTAGSVVLANAAPASRDAAVVALLARAGMVSIGRTNMSEFAF-----SGLGLNPHYGTPVNPRSTDVPRIP  153 (452)
T ss_pred             ccccCC-CccCcCChhhccCCCCCCCHHHHHHHHHCCCEEEEeechHhHhc-----CCCCCCCCCCCCCCCCCCCCCcCC
Confidence            999997 999999999999887 7999999999999999999999999999     788999999999999986  7999


Q ss_pred             CCCCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccCC
Q 036327          195 CGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSN  274 (525)
Q Consensus       195 GGSSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~  274 (525)
                      ||||||||||||+|++++|+||||||||||||+||||||||||+||||+.|++|+++++|++|||||||  +|+++++  
T Consensus       154 GGSSgGsAaaVAaG~~~~alGtDtgGSiRiPAa~cGv~G~KPT~G~v~~~G~~~~~~s~d~~Gp~arsv--~D~a~~~--  229 (452)
T PRK06102        154 GGSSSGSAVAVAAGLVPVAMGTDTGGSVRIPAAFNGLVGYKATRGRYSMDGVFPLAKSLDSLGPLCRSV--RDAVWID--  229 (452)
T ss_pred             CCCcHHHHHHHHcCCCceEEecCCCCcchhhhHHhCceeEecCCCcccCCCCcccccccCcccCccCCH--HHHHHHH--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999  9999999  


Q ss_pred             CceeeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeeee
Q 036327          275 GSSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIA  354 (525)
Q Consensus       275 ~vl~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p  354 (525)
                      ++|.|.++.|..        +          .+++++|||+..+.+.. .++|+++++++++++.|+++||+|++ +++|
T Consensus       230 ~~l~g~~~~~~~--------~----------~~~~~~ri~~~~~~~~~-~~~~~v~~~~~~a~~~L~~~G~~v~~-~~~~  289 (452)
T PRK06102        230 AAMRGLTAPDVV--------R----------RPLAGLRLVVPETVVFD-DAEPGVRAAFEAAVERLQAAGALVER-QAFP  289 (452)
T ss_pred             HHHcCCCCcccc--------c----------cCCCCCEEEEecchhcc-cCCHHHHHHHHHHHHHHHhCCCEEEe-cCCc
Confidence            999998654311        0          23467899998775543 58999999999999999999999987 6766


Q ss_pred             ceeeEeecccccchhhHHHHHHHHHHHHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCCCchhHHH
Q 036327          355 NIDVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAA  434 (525)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  434 (525)
                      .+.+..... ..+..+...|....+..++..                      .....+.............++..++..
T Consensus       290 ~~~~~~~~~-~~~~~~~~~e~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~  346 (452)
T PRK06102        290 AFQEILDLI-ARHGWLVTAEAFALHQERLDG----------------------PDAARMDPRVVKRTRLGRKITASDYIA  346 (452)
T ss_pred             cHHHHHHHH-HHHHHHHHHHHHHHHHHHhhc----------------------cchhhCCHHHHHHHHhccCCCHHHHHH
Confidence            543221100 001112223332222211110                      000112222211112222333333333


Q ss_pred             HhhhhhcchhhhhhhhhhccccccccCCCC-------------------------ccceeeecCCCCcccCCCCCCCCCc
Q 036327          435 LLNLAKLSRDGFEKAMTVNKLDALVTPRSD-------------------------IAPVLAIGGFPGINVPAGYDTEGVP  489 (525)
Q Consensus       435 ~~~~r~~~~~~~~~~~~~~~~DvLl~Pt~~-------------------------~t~~~n~~G~PaisvP~G~~~~GlP  489 (525)
                      ..+.|..+++.+.++|+   +|+||+||++                         ||.+||++|+|++|||+|+..+|||
T Consensus       347 a~~~r~~~~~~~~~~~~---~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~~glP  423 (452)
T PRK06102        347 LLEARERLIAQVTRELG---GALLATPTVAHVAPPLAPLEADDDLFFATNLKTLRNTMPGNFLDMCGVSLPCGTGAAGMP  423 (452)
T ss_pred             HHHHHHHHHHHHHHHHc---CCEEEeCCCCCCCCCccccccCchhhhhhhhhhhhcCccccccCCCeEEEecCCCCCCCC
Confidence            34445555677888886   7999999965                         3568899999999999999889999


Q ss_pred             ceeecCCccCCCcceEeeeecccccee
Q 036327          490 FGINFGGLRGTEPKLIEIAYGFEQATM  516 (525)
Q Consensus       490 vGlQivg~~~~D~~LL~~A~~lE~~~~  516 (525)
                      +||||+|++|+|++||++|++||++++
T Consensus       424 vGlQivg~~~~D~~lL~~a~~le~~l~  450 (452)
T PRK06102        424 VGLLLSAPAGRDERLLRAALAVEAVIR  450 (452)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999873


No 18 
>PRK07056 amidase; Provisional
Probab=100.00  E-value=1.1e-95  Score=774.29  Aligned_cols=414  Identities=25%  Similarity=0.353  Sum_probs=344.2

Q ss_pred             chhhhhhHhhhhhhhhhhhHHhhhhhhhhccc-cceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhhhhhhhc
Q 036327           43 TIEGIQLAFRQNQLASRQLVQFYIGEIRRLNP-VLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIG  120 (525)
Q Consensus        43 s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~-~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD~~~  120 (525)
                      ++.+|+++|++|++|++|++++||+||+++|+ .+|||+++++| ++++|+++|+++  ++|+.+||||||||+|||+|+
T Consensus         7 ~~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~~lna~~~~~~~~al~~A~~~d~~~--~~g~~~gpL~GvPi~vKD~~~   84 (454)
T PRK07056          7 TLAALAADLAAGRTTSRALVEAALARIADPAGEGARVFTHVDADAARAAADAADALR--AAGAAPSPLAGIPVSVKDLFD   84 (454)
T ss_pred             CHHHHHHHHHcCCCCHHHHHHHHHHHHHhhCCCCccEEEEeCHHHHHHHHHHHHHHH--hCCCCCCCcCCCeEEEEeeec
Confidence            89999999999999999999999999999997 49999999999 999999999988  788889999999999999999


Q ss_pred             ccccCCCCcccceeecccc-ccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCce----eeecCCC
Q 036327          121 TKDKQNTTAGSFALLGSVV-ARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPY----VLSADPC  195 (525)
Q Consensus       121 ~~gg~~tt~Gs~~~~~~~~-~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~----~~~~~~G  195 (525)
                      ++| ++||+||..+.++++ .+||++|+|||++|||++||||||||++     +.++.|++||+|+|||    |++|+||
T Consensus        85 v~G-~~tt~Gs~~~~~~~~~~~dA~vV~rLr~aGAii~GKTn~~E~~~-----~~~~~n~~~G~t~NP~~~~~~~~~~~G  158 (454)
T PRK07056         85 VAG-QVTRAGSRVLADAPPAAADAPAVARLRRAGAVLIGRTNMTEFAF-----SGLGLNPHYGTPRNPWRRDVGDGRIPG  158 (454)
T ss_pred             cCC-CccCCCChhhccCCCCCCCHHHHHHHHHCCCEEEEeccchhHhh-----CCCCCCCCCCCCCCCCCCCCCCCcCCC
Confidence            997 999999999999988 6899999999999999999999999999     7889999999999999    8999999


Q ss_pred             CCCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccCCC
Q 036327          196 GSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNG  275 (525)
Q Consensus       196 GSSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~~  275 (525)
                      |||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++|||||+|  +|+++++  +
T Consensus       159 GSSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~~~d~~Gp~arsv--~D~a~~~--~  234 (454)
T PRK07056        159 GSSSGAAVSVADGMAAAALGTDTGGSIRIPAALCGLTGFKPTARRVPLQGAVPLSTTLDSIGPLARSV--ACCALVD--A  234 (454)
T ss_pred             CcchHHHHHHHcCCCceEEeeCCCCccccchHhhCceeeccCCCccCCCCcccCccccCcccCccCCH--HHHHHHH--H
Confidence            99999999999999999999999999999999999999999999999999999999999999999999  9999999  9


Q ss_pred             ceeeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeeeec
Q 036327          276 SSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIAN  355 (525)
Q Consensus       276 vl~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p~  355 (525)
                      +|.|+|+.|+..                  .+.+++||||+.+++.. .++++++++++++++.|+++||+|++ +++|.
T Consensus       235 vl~g~d~~d~~~------------------~~~~~lrig~~~~~~~~-~~~~~v~~~~~~a~~~L~~~G~~v~~-~~~~~  294 (454)
T PRK07056        235 VLAGEEPVVPAA------------------RPLEGLRLAVPTTVVLD-GLDATVAAAFERALKRLSAAGAIIEE-IAFPE  294 (454)
T ss_pred             HhcCCCCCCccc------------------ccccCcEEEEcchhhcc-CCCHHHHHHHHHHHHHHHHCCCEEEE-ecCcc
Confidence            999988776321                  13467999999876543 58999999999999999999999987 67664


Q ss_pred             eeeEeecccccchhhHHHHHHHHHHHHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCCCchhHHHH
Q 036327          356 IDVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAAL  435 (525)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  435 (525)
                      +.......  ....+...|....+..++.                       .....+.+...........++...+...
T Consensus       295 ~~~~~~~~--~~~~~~~~e~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~a  349 (454)
T PRK07056        295 LAELAEIN--AKGGFSAAESYAWHRPLLA-----------------------RHRDQYDPRVAARILRGEPMSAADYIDL  349 (454)
T ss_pred             hHHHHHHH--HhhhHHHHHHHHHHHHHHh-----------------------hhhhhCCHHHHHHHHcCCCCCHHHHHHH
Confidence            43221100  0011222333322222111                       0111222222222222233343334444


Q ss_pred             hhhhhcchhhhhhhhhhccccccccCCCC-------------------------ccceeeecCCCCcccCCCCCCCCCcc
Q 036327          436 LNLAKLSRDGFEKAMTVNKLDALVTPRSD-------------------------IAPVLAIGGFPGINVPAGYDTEGVPF  490 (525)
Q Consensus       436 ~~~r~~~~~~~~~~~~~~~~DvLl~Pt~~-------------------------~t~~~n~~G~PaisvP~G~~~~GlPv  490 (525)
                      .+.|..+++.+.++|+  ++|+||+|+++                         +|.+||++|+|++|||+|. .+|||+
T Consensus       350 ~~~r~~~~~~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~-~~glPv  426 (454)
T PRK07056        350 LAARAAWIARAAARLA--RFDALVMPTVPIVPPRIADLEADDAAFFRTNALLLRNPSLINFLDGCALSLPCHA-PGEAPV  426 (454)
T ss_pred             HHHHHHHHHHHHHHHc--cCCEEEECCCCCCCCCcccccccchhhHHHHHHHhhcCccchhcCCCEEEEeCCC-CCCCCE
Confidence            4455555677999996  69999999975                         2457899999999999996 479999


Q ss_pred             eeecCCccCCCcceEeeeecccccee
Q 036327          491 GINFGGLRGTEPKLIEIAYGFEQATM  516 (525)
Q Consensus       491 GlQivg~~~~D~~LL~~A~~lE~~~~  516 (525)
                      ||||+|++|+|++||++|++||+.++
T Consensus       427 Glqivg~~~~D~~lL~~a~~le~~l~  452 (454)
T PRK07056        427 GLMLAGAPGRDDRLLAIALAVEAVLR  452 (454)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999864


No 19 
>PRK12470 amidase; Provisional
Probab=100.00  E-value=7.3e-95  Score=768.88  Aligned_cols=425  Identities=24%  Similarity=0.276  Sum_probs=342.0

Q ss_pred             eeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhhhhh
Q 036327           39 IKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVLLKD  117 (525)
Q Consensus        39 ~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD  117 (525)
                      +..+|+.+|+++|++|++|++|++++||+||+++|+.+|||+++++| ++++|+++|+++  ++|+.+ |||||||+|||
T Consensus         6 ~~~~s~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~~~a~~~A~~~d~~~--~~g~~~-pL~GvPi~vKD   82 (462)
T PRK12470          6 LAFAGAAAQARMLADGELTAPMLLEVYLQRIERLDSHLRAYRVVLFDRARAEAEAAQQRL--DAGERL-PLLGVPIAIKD   82 (462)
T ss_pred             hhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCCcCEEEEeCHHHHHHHHHHhHHHH--hcCCCC-CcCCCeEEEec
Confidence            56679999999999999999999999999999999999999999999 999999999988  778777 99999999999


Q ss_pred             hhcccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCCCC
Q 036327          118 MIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGS  197 (525)
Q Consensus       118 ~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~GGS  197 (525)
                      ||+++| ++||+||..+ ++++.+||++|+|||++|||++||||||||++     +..+.|++||+|+||||++|+||||
T Consensus        83 ~~~v~G-~~tt~Gs~~~-~~~~~~dA~vV~rLr~aGaii~GKTn~~Efa~-----~~~~~n~~~G~t~NP~~~~~~~GGS  155 (462)
T PRK12470         83 DVDVAG-EVTTYGSAGH-GPAATSDAEVVRRLRAAGAVIIGKTNVPELMI-----MPFTESLAFGATRNPWDPNRTPGGS  155 (462)
T ss_pred             CcccCC-ceeCCCCccc-CCCCCccHHHHHHHHHCCCeEEEEeChHhHhc-----CCCCCCCCCCCCCCCCCCCCCCCcc
Confidence            999997 9999999985 58889999999999999999999999999999     7888999999999999999999999


Q ss_pred             CCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccCCCce
Q 036327          198 SSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGSS  277 (525)
Q Consensus       198 SgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~~vl  277 (525)
                      |||||+|||+|++|+|+|||||||||||||||||||||||+||||+.|++|+++++|++|||||+|  +|+++++  ++|
T Consensus       156 SgGsAaAVAaG~~~~alGtDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~ld~~Gp~ar~v--~D~a~~~--~vl  231 (462)
T PRK12470        156 SGGSAAAVAAGLAPVALGSDGGGSIRIPSTWCGLFGLKPQRDRISLEPHDGAWQGLSVNGPIARSV--MDAALLL--DAT  231 (462)
T ss_pred             hhHHHHHHHcCCCceEEecCCCCchhhchhhhCceeecCCCCCcCCCCCCCcccCccccCCeeCCH--HHHHHHH--HHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999  9999999  999


Q ss_pred             eeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCcc--ccCCcchhHHHHHHHHHHHhhccceeeeeeeeec
Q 036327          278 ISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFF--NFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIAN  355 (525)
Q Consensus       278 ~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~--~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p~  355 (525)
                      .+.+..+.            .|...+. ...+++||||+.+++.  ...++++|+++++++++.|+++|++|++ +++ +
T Consensus       232 ~~~~~~~~------------~~~~~~~-~~~~~lrig~~~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~-~  296 (462)
T PRK12470        232 TTVPGPEG------------EFVAAAA-REPGRLRIALSTRVPTPLPVRCGKQELAAVHQAGALLRDLGHDVVV-RDP-D  296 (462)
T ss_pred             cCCCCCCc------------chhhhhc-cCCCCCEEEEECCccccCCCCCCHHHHHHHHHHHHHHHhCCCEEEE-eCC-C
Confidence            98654331            1221111 3457799999976431  1358999999999999999999999976 442 2


Q ss_pred             eeeEeecccccchhhHHHHHHHHHHHHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCCCchhHHHH
Q 036327          356 IDVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAAL  435 (525)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  435 (525)
                      +....       ...+...+...+..+               ... ..     ....+.+...........++..++.+.
T Consensus       297 ~~~~~-------~~~~~~~~~~~~~~~---------------~~~-~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~  348 (462)
T PRK12470        297 YPAAT-------YANYLPRFFRGISDD---------------ADA-QA-----HPDRLEARTRAIARLGSFFSDRRMAAL  348 (462)
T ss_pred             chhHH-------HHHHHHHHHHHHHHh---------------hcc-cc-----ChhhcCHHHHHHHHhcccCCHHHHHHH
Confidence            21100       000000000000000               000 00     001122222212222222333333444


Q ss_pred             hhhhhcchhhhhhhhhhccccccccCCCC--------------------------ccceeeecCCCCcccCCCCCCCCCc
Q 036327          436 LNLAKLSRDGFEKAMTVNKLDALVTPRSD--------------------------IAPVLAIGGFPGINVPAGYDTEGVP  489 (525)
Q Consensus       436 ~~~r~~~~~~~~~~~~~~~~DvLl~Pt~~--------------------------~t~~~n~~G~PaisvP~G~~~~GlP  489 (525)
                      ..++..++..+.++|+  ++|+||+||+|                          ||.++|++|+|+||||+|+..+|||
T Consensus       349 ~~~~~~~~~~~~~~~~--~~D~ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlP  426 (462)
T PRK12470        349 RAAEVVLSARIQSIFD--DVDVVVTPGTATGPSRIGAYQRRGAVSTLLLVVQRVPYFQVWNLTGQPAAVVPWDFDGDGLP  426 (462)
T ss_pred             HHHHHHHHHHHHHHHh--CCCEEeCCCCCCCCCCCCccCCCcchhhhhhhhhccCcCccchhcCCCeEEEecCcCCCCCc
Confidence            4444344677999997  69999999875                          2457899999999999999889999


Q ss_pred             ceeecCCccCCCcceEeeeeccccceecc-CCCC
Q 036327          490 FGINFGGLRGTEPKLIEIAYGFEQATMIR-KPPS  522 (525)
Q Consensus       490 vGlQivg~~~~D~~LL~~A~~lE~~~~~~-~~P~  522 (525)
                      +||||+|++|+|.+||++|++||++.+|+ +.|+
T Consensus       427 vGlqlvg~~~~D~~LL~~A~~le~~~~~~~~~p~  460 (462)
T PRK12470        427 MSVQLVGRPYDEATLLALAAQIESARPWAHRRPP  460 (462)
T ss_pred             eEEEEECCCCcHHHHHHHHHHHHccCCccccCCC
Confidence            99999999999999999999999998885 4343


No 20 
>PRK06061 amidase; Provisional
Probab=100.00  E-value=8.7e-95  Score=772.33  Aligned_cols=428  Identities=22%  Similarity=0.278  Sum_probs=343.5

Q ss_pred             eeeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhhhh
Q 036327           38 SIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVLLK  116 (525)
Q Consensus        38 ~~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vK  116 (525)
                      +...+|+.+|+++|++|++|++||+++||+||+++|+.+|||+++++| ++++|+++|+++  ++|.. +|||||||+||
T Consensus        14 ~~~~~s~~~l~~~l~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~--~~g~~-~pL~GvPv~vK   90 (483)
T PRK06061         14 NDRLPGLTDQAYQLASGAVTSVELVRRSLRRIEASQPTLNAFRVVRAEAALAEAAEADRRR--AAGDR-LPLLGVPIAVK   90 (483)
T ss_pred             CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCCEEEEeChHHHHHHHHHHHHHH--hcCCC-CCcCCCeEEEE
Confidence            456789999999999999999999999999999999999999999999 999999999988  66665 49999999999


Q ss_pred             hhhcccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCCC
Q 036327          117 DMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCG  196 (525)
Q Consensus       117 D~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~GG  196 (525)
                      |||+++| ++||+||... ..++.+||++|+|||+||||++||||||||++     +..+.|++||+|+||||++|+|||
T Consensus        91 D~~~v~G-~~tt~Gs~~~-~~~a~~dA~vV~~Lr~AGAii~GKTn~~Efa~-----~~~~~n~~~G~t~NP~~~~~~~GG  163 (483)
T PRK06061         91 DDVDVAG-VPTAFGTAGE-VPPATADSEVVRRLRAAGAVIVGKTNTCELGQ-----WPFTSGPAFGHTRNPWSRDHTPGG  163 (483)
T ss_pred             cccccCC-ceecCCCccc-CCCCCCCHHHHHHHHHCCCEEEEecCcchhcc-----CCCCCCCCCCCCCCCCCCCCCCCC
Confidence            9999997 9999999843 22336999999999999999999999999999     788899999999999999999999


Q ss_pred             CCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccCCCc
Q 036327          197 SSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGS  276 (525)
Q Consensus       197 SSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~~v  276 (525)
                      ||||||++||+|++|+|+||||||||||||+||||||||||+||||+.|+.+..+++|++|||||||  +|+++++  ++
T Consensus       164 SSgGsAaAVAaG~~~~alGtDtgGSIRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~d~~Gp~arsv--~D~a~~~--~~  239 (483)
T PRK06061        164 SSGGSAAAVAAGLVTAAIGSDGAGSVRIPAAWTHLVGIKPQRGRISTWPLPEAFNGLTVNGPLARTV--ADAALLL--DA  239 (483)
T ss_pred             ChHHHHHHHHcCCCceEeecCCCCcchhchhhcCceeecCCCCccCCCCCCcccccCceeCCEeCCH--HHHHHHH--HH
Confidence            9999999999999999999999999999999999999999999999999999889999999999999  9999999  99


Q ss_pred             eeeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCcc---ccCCcchhHHHHHHHHHHHhhccceeeeeeee
Q 036327          277 SISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFF---NFDKGSALTQAFNYHLQTLRQQGAVLVDYLEI  353 (525)
Q Consensus       277 l~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~---~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~  353 (525)
                      |.|+|+.|+.+...    +  .+..... ...+++||||+.+..+   ...++|+++++++++++.|+++||+|++ +++
T Consensus       240 l~g~d~~d~~~~~~----~--~~~~~~~-~~~~~lrig~~~~~~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~v~~-~~~  311 (483)
T PRK06061        240 ASGNHPGDRHRPPP----V--TVSDAVG-RAPGPLRIALSTRFPFTGFPAKLHPEIRAAVRRVAEQLALLGHTVVP-ADP  311 (483)
T ss_pred             HhCCCCCCCcccCC----c--cchhhhc-cCCCCcEEEEECCccccccccCCCHHHHHHHHHHHHHHHHCCCEEEE-eCC
Confidence            99999888554221    1  0111111 3457899999876432   1247999999999999999999999976 443


Q ss_pred             eceeeEeecccccchhhHHHHHHHHHHHHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCCCchhHH
Q 036327          354 ANIDVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKA  433 (525)
Q Consensus       354 p~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (525)
                      + +....       ...+..+....+..++...                ..     ...+.+...........++..++.
T Consensus       312 ~-~~~~~-------~~~~~~~~~~~~~~~~~~~----------------~~-----~~~~~~~~~~~~~~g~~~~~~~~~  362 (483)
T PRK06061        312 D-YGLRL-------GLNFLPRSTAGLRDWAERL----------------GD-----PVLLDPRTVSNARMGRLLSQAILR  362 (483)
T ss_pred             c-hhhHH-------HHHHHHHHHHHHHHHHhhc----------------cC-----hhhCCHHHHHHHHhcccCCHHHHH
Confidence            2 11100       0000011111111111100                00     001122221111222233444444


Q ss_pred             HHhhhhhcchhhhhhhhhhccccccccCCCC--------------------------ccceeeecCCCCcccCCCCCCCC
Q 036327          434 ALLNLAKLSRDGFEKAMTVNKLDALVTPRSD--------------------------IAPVLAIGGFPGINVPAGYDTEG  487 (525)
Q Consensus       434 a~~~~r~~~~~~~~~~~~~~~~DvLl~Pt~~--------------------------~t~~~n~~G~PaisvP~G~~~~G  487 (525)
                      ...+.|+.+++.+.++|+  ++|+||+||++                          ||.+||++|+|++|||+|+..+|
T Consensus       363 ~a~~~r~~~~~~~~~~~~--~~D~ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PaisvP~g~~~~G  440 (483)
T PRK06061        363 LARAAEAAAQRRVGSIFD--IVDVVLAPTTAQPPPRVGAFDRLGGWATDRAMIAACPYTWPWNVLGWPSINVPAGFTSDG  440 (483)
T ss_pred             HHHHHHHHHHHHHHHHHh--cCCEEEcCCCCCCCCCcccccccccchhhhhhhhcccccccccccCCCeEEEecCcCCCC
Confidence            445555656777999997  69999999975                          34578999999999999998899


Q ss_pred             CcceeecCCccCCCcceEeeeeccccceecc
Q 036327          488 VPFGINFGGLRGTEPKLIEIAYGFEQATMIR  518 (525)
Q Consensus       488 lPvGlQivg~~~~D~~LL~~A~~lE~~~~~~  518 (525)
                      ||+||||+|++|+|++||++|++||++++|+
T Consensus       441 lPvGlQivg~~~~D~~LL~~A~~le~~~~~~  471 (483)
T PRK06061        441 LPIGAQLMGPANSEPLLISLAAQLEAVSGWA  471 (483)
T ss_pred             CCeeeEEECCCCCHHHHHHHHHHHHhhcCcc
Confidence            9999999999999999999999999999884


No 21 
>PRK08186 allophanate hydrolase; Provisional
Probab=100.00  E-value=8.1e-94  Score=776.95  Aligned_cols=424  Identities=27%  Similarity=0.361  Sum_probs=344.9

Q ss_pred             eccchhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCc-c-hhccccchhhhhcccCCCceecccCchhhhhh
Q 036327           40 KEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNP-D-ALYQADKADYERKVKAPGSLVGLRGIPVLLKD  117 (525)
Q Consensus        40 ~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~-~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD  117 (525)
                      ..+|+.+|+++|++|++|++|++++|++||++ ++.+|+|+++++ + ++++|+++|+++  +   ..+|||||||+|||
T Consensus         5 ~~~t~~~l~~~~~~g~~t~~evv~a~l~ri~~-~~~~~a~i~~~~~~~a~~~A~~ld~~~--~---~~gPL~GVP~aVKD   78 (600)
T PRK08186          5 TDLTLASLRAAYRAGTLTPRAVVAALYARIAA-VDDPEVWIHLRPEADLLAQAAALEARD--P---AALPLYGVPFAVKD   78 (600)
T ss_pred             ccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHh-cCCCCEEEEeCchHHHHHHHHHHhhhc--c---ccCCCCCCeEEeec
Confidence            34599999999999999999999999999998 568999999987 5 999999999876  3   36899999999999


Q ss_pred             hhcccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCCCC
Q 036327          118 MIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGS  197 (525)
Q Consensus       118 ~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~GGS  197 (525)
                      |||++| ++||+||..+. ++|.+||++|+|||+||||++||||||||++     +..|.|+.||+|+||||++|+||||
T Consensus        79 nidvaG-~pTTaGs~~~~-~~p~~DA~vV~rLr~AGAIilGKTN~~Efa~-----g~~g~n~~yG~t~NP~~~~~~~GGS  151 (600)
T PRK08186         79 NIDVAG-LPTTAACPAFA-YTPERDATVVARLRAAGAIVIGKTNLDQFAT-----GLVGTRSPYGAVRNAFDPEYVSGGS  151 (600)
T ss_pred             ceecCC-cccCcCCHhHc-CCCCcChHHHHHHHHCCCEEEeeecchhhhc-----CCCCCCCCCCCCCCCCCCCCCCCCC
Confidence            999997 99999999986 7889999999999999999999999999999     7889999999999999999999999


Q ss_pred             CCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccCCCce
Q 036327          198 SSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGSS  277 (525)
Q Consensus       198 SgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~~vl  277 (525)
                      |||||++||+|++++|+|||||||||+||+||||||||||+|+||+.|++|.++++|++|||||||  +|+++++  ++|
T Consensus       152 SsGSAaAVAaG~~~~alGTDtgGSiRiPAa~cGlvGlKPT~G~vs~~Gv~p~~~slD~vGp~Arsv--~D~~~~l--~vl  227 (600)
T PRK08186        152 SSGSAVAVALGLVSFALGTDTAGSGRVPAAFNNIVGLKPTLGLLSTRGVVPACRTLDCVSVFALTV--DDADAVL--AVM  227 (600)
T ss_pred             cHHHHHHHHcCCcceEeeecCCCcchhhhHHhCceEEeCCCCcccCCCcccccccCCceecccCCH--HHHHHHH--HHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999  9999999  999


Q ss_pred             eeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeeeecee
Q 036327          278 ISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANID  357 (525)
Q Consensus       278 ~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~~  357 (525)
                      .|+|+.|+.+...    |. .+.    ....+++||||+.+..+....+++++++++++++.|+++|++|++ +++|.+.
T Consensus       228 ~g~d~~D~~s~~~----p~-~~~----~~~~~~lrIgv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~e-i~~~~~~  297 (600)
T PRK08186        228 AGFDPADPYSRAN----PA-DAP----AALPAGPRVGVPRAAQLEFFGDAEAEAAFAAALARLEALGAELVE-IDFSPFL  297 (600)
T ss_pred             cCCCCCCcccccC----Cc-ccc----cccCCCCEEEEEcchhccccCCHHHHHHHHHHHHHHHHcCCeEEE-ecchhHH
Confidence            9999988665432    21 110    123567999998643222225889999999999999999999987 6766432


Q ss_pred             eEeecccccchhhHHHHHHHHHHHHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCCCchhHHHHhh
Q 036327          358 VILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAALLN  437 (525)
Q Consensus       358 ~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  437 (525)
                      +...   ..+...+..|....+.+++..                  ++  +   .+.+...........++..++...++
T Consensus       298 ~~~~---~~~~~~~~ae~~~~~~~~~~~------------------~~--~---~~~p~~~~~i~~g~~~sa~~~~~a~~  351 (600)
T PRK08186        298 EAAR---LLYEGPWVAERYAAVGEFLEA------------------HP--D---AVDPVVRGIIAGAAAFSAADAFRALY  351 (600)
T ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHhh------------------Ch--h---hcCHHHHHHHHhCcCCCHHHHHHHHH
Confidence            1110   011122223333333222210                  00  1   11121111112222334333334444


Q ss_pred             hhhcchhhhhhhhhhccccccccCCCC---------------------ccceeeecCCCCcccCCCCCCCCCcceeecCC
Q 036327          438 LAKLSRDGFEKAMTVNKLDALVTPRSD---------------------IAPVLAIGGFPGINVPAGYDTEGVPFGINFGG  496 (525)
Q Consensus       438 ~r~~~~~~~~~~~~~~~~DvLl~Pt~~---------------------~t~~~n~~G~PaisvP~G~~~~GlPvGlQivg  496 (525)
                      .++.++++++++|+  ++|+||+||++                     ||.++|++|+|+++||+|+..+|||+||||+|
T Consensus       352 ~r~~l~~~~~~~~~--~~D~Ll~Pt~p~~~~~~~~~~~~~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig  429 (600)
T PRK08186        352 RLAELRRAAEAVLA--GIDALLVPTAPTHPTIAEVAADPIGLNSRLGTYTNFVNLLDLCALAVPAGFRADGLPFGVTLIA  429 (600)
T ss_pred             HHHHHHHHHHHHhc--CCCEEEeCCCCCCCCchhhcCCchhhhhhhhhccccccccCCCeEEEecccCCCCCCeeEEEEc
Confidence            55555777999997  69999999975                     56789999999999999999999999999999


Q ss_pred             ccCCCcceEeeeeccccceecc
Q 036327          497 LRGTEPKLIEIAYGFEQATMIR  518 (525)
Q Consensus       497 ~~~~D~~LL~~A~~lE~~~~~~  518 (525)
                      ++|+|++||++|+.||+.++|+
T Consensus       430 ~~~~D~~LL~~A~~le~~~~~~  451 (600)
T PRK08186        430 PAFADQALADLAARLQAALALP  451 (600)
T ss_pred             CCCCHHHHHHHHHHHHhhcccc
Confidence            9999999999999999998763


No 22 
>PRK07869 amidase; Provisional
Probab=100.00  E-value=1.6e-93  Score=761.50  Aligned_cols=425  Identities=21%  Similarity=0.261  Sum_probs=332.0

Q ss_pred             eeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhhhhh
Q 036327           39 IKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVLLKD  117 (525)
Q Consensus        39 ~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD  117 (525)
                      +..+++.+|+++|++|++|++||+++||+||+++|+.+|||+++++| |+++|+++|.        ..||||||||+|||
T Consensus        12 ~~~~~~~~l~~~~~~g~~s~~el~~~~l~ri~~~~~~lna~~~~~~e~a~~~A~~~d~--------~~gpL~GvPi~vKD   83 (468)
T PRK07869         12 LGDLDAVGLAEAIRAGRVSAAEVVEAAIARAEAVNPALNALAYAAFDRARDRAARPGS--------QGGFFSGVPTFIKD   83 (468)
T ss_pred             hhcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCcCEEEEcCHHHHHHHHHhcCC--------CCCCcCCCeEEEec
Confidence            56679999999999999999999999999999999999999999999 9999988763        24799999999999


Q ss_pred             hhcccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCCCC
Q 036327          118 MIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGS  197 (525)
Q Consensus       118 ~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~GGS  197 (525)
                      ||+++| ++||+||..+.+++|.+||++|+|||+||||++||||||||++     +..+.|++||+|+||||++|+||||
T Consensus        84 ~~~v~G-~~tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~-----~~~~~n~~~G~t~NP~d~~~~pGGS  157 (468)
T PRK07869         84 NVDVAG-LPTMHGSDAWTPRPAKADSDFARQFLATGLISLGKTQLPEFGF-----SASTEHPRLGPVRNPWNTDYSAGAS  157 (468)
T ss_pred             CcccCC-cccCcccHhhcCCCCCCcHHHHHHHHHCCCEEEEecCchHhhc-----CCCCCCCCCCCcCCCCCCCCCCCCC
Confidence            999997 9999999999999999999999999999999999999999999     7889999999999999999999999


Q ss_pred             CCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceec-CCCCccccceeeeeeeccceeccCCCc
Q 036327          198 SSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPV-SPRQDTIGDICLSLFISDAKVSSSNGS  276 (525)
Q Consensus       198 SgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~-~~~~d~~GpmaRsV~~~D~a~~l~~~v  276 (525)
                      |||||||||+|++|+|+|||||||||||||||||||||||+||||+.|+.+. ..++|++|||||||  +|+++++  ++
T Consensus       158 SgGsAaAVAaG~~~~alGTDtgGSiRiPAa~cGvvG~KPT~G~vs~~g~~~~~~~~~d~~Gp~arsv--~D~a~l~--~v  233 (468)
T PRK07869        158 SGGSAALVAAGVVPIAHANDGGGSIRIPAACCGLVGLKPSRGRLPLDPELRRLPVNIVANGVLTRTV--RDTAAFY--RE  233 (468)
T ss_pred             chHHHHHHHcCCCceeeecCCCCccccchhhcCeeeecCCCCcccCCCCcccCccccceecCeeCcH--HHHHHHH--HH
Confidence            9999999999999999999999999999999999999999999999998774 34689999999999  9999999  99


Q ss_pred             eeeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeeeece
Q 036327          277 SISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANI  356 (525)
Q Consensus       277 l~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~  356 (525)
                      |.|.++.+...       +. .+.   .....+++||||+.++++...++|+++++++++++.|+++|++|++ +++|..
T Consensus       234 ~~g~~~~~~~~-------~~-~~~---~~~~~~~lrigv~~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~v~~-~~~~~~  301 (468)
T PRK07869        234 AERYYRNPKLP-------PI-GDV---TGPGKQRLRIAVVTDSVTGREADPEVREAVLATARLLEELGHRVEP-VDLPVP  301 (468)
T ss_pred             HhccCccCCCC-------ch-hhh---cccCCCCCEEEEECCccCCCCCCHHHHHHHHHHHHHHHHCCCEEEE-eCCCch
Confidence            99987654211       10 010   1123578999999776541258999999999999999999999987 565532


Q ss_pred             eeEeecccccchhhHHHHHHHHHHHHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCCCchhHHHHh
Q 036327          357 DVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAALL  436 (525)
Q Consensus       357 ~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  436 (525)
                      +.....+ ..++.....+..    .+........         +   .  ......+........   ......+.++.+
T Consensus       302 ~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~---------~---~--~~~~~~~~~~~~~~~---~~~~~~~~~a~~  359 (468)
T PRK07869        302 ASFVDDF-LLYWGFLAFALV----RGGRRTFGPS---------F---D--RTRLDNLTLGLARHA---RRNLHRLPLAIA  359 (468)
T ss_pred             HHHHHHH-HHHHHHHHHHHH----hhhhhhcccc---------c---C--HHHhhHHHHHHHHHH---hhhHHHHHHHHH
Confidence            1111000 000000000000    0000000000         0   0  000111111111000   000112233333


Q ss_pred             hhhhcchhhhhhhhhhccccccccCCCC---------------------------ccceeeecCCCCcccCCCCCCCCCc
Q 036327          437 NLAKLSRDGFEKAMTVNKLDALVTPRSD---------------------------IAPVLAIGGFPGINVPAGYDTEGVP  489 (525)
Q Consensus       437 ~~r~~~~~~~~~~~~~~~~DvLl~Pt~~---------------------------~t~~~n~~G~PaisvP~G~~~~GlP  489 (525)
                      .+++ .++.+.++|+  ++|+||+||++                           ||.++|++|+|++|||+|+..+|||
T Consensus       360 ~~~~-~~~~~~~~~~--~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~~GlP  436 (468)
T PRK07869        360 RLRR-LRRVYARFFG--TYDVVLTPTLAHTTPEIGYLDPTQDFDTVLDRLISYVAFTPLQNATGEPAISLPLGQSSDGLP  436 (468)
T ss_pred             HHHH-HHHHHHHHHh--cCCEEecCCCCCCCCCCCccCccccchhhhHHHhcccccCccccccCCCceeeecCcCCCCCC
Confidence            3333 3567899997  69999999975                           2457899999999999999889999


Q ss_pred             ceeecCCccCCCcceEeeeeccccceecc
Q 036327          490 FGINFGGLRGTEPKLIEIAYGFEQATMIR  518 (525)
Q Consensus       490 vGlQivg~~~~D~~LL~~A~~lE~~~~~~  518 (525)
                      +||||+|++|+|++||++|++||++.+|+
T Consensus       437 vGlQivg~~~~D~~lL~~A~~le~~~~~~  465 (468)
T PRK07869        437 VGMMFSADVGDEATLLELAYELEEAQPWP  465 (468)
T ss_pred             eeEEEecCCCchHHHHHHHHHHHhcCCCc
Confidence            99999999999999999999999987764


No 23 
>PRK06529 amidase; Provisional
Probab=100.00  E-value=1.3e-93  Score=764.39  Aligned_cols=425  Identities=22%  Similarity=0.263  Sum_probs=336.2

Q ss_pred             eccchhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhhhhhh
Q 036327           40 KEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVLLKDM  118 (525)
Q Consensus        40 ~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD~  118 (525)
                      .++++.+|+++|++|++|++|++++||+||+++|+.+|||+++++| |+++|+++|++     |   +|||||||+||||
T Consensus         2 ~~~~~~~l~~~~~~g~~s~~e~~~~~l~ri~~~~~~lna~~~~~~e~al~~A~~~d~~-----~---~PL~GvPi~vKD~   73 (482)
T PRK06529          2 TYKDATAMAQAVQQGQVTPLELVTQAIYKAKKLNPTLNAIVSERYEEALEEAKQRDFS-----G---KPFAGVPIFLKDL   73 (482)
T ss_pred             CcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHCCcccEEEecChHHHHHHHHhcccc-----C---CCcCCCeEEEecC
Confidence            4678999999999999999999999999999999999999999999 99999988842     2   4999999999998


Q ss_pred             -hcccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCCCC
Q 036327          119 -IGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGS  197 (525)
Q Consensus       119 -~~~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~GGS  197 (525)
                       |+++| ++||+||..++++++.+||++|+|||+|||||+||||||||++     +..+.|++||+|+||||++|+||||
T Consensus        74 ~~~v~G-~~tt~Gs~~~~~~~~~~Da~vV~rLr~AGAiilGKTn~~E~~~-----~~~~~n~~~G~t~NP~~~~~~~GGS  147 (482)
T PRK06529         74 GQELKG-QLSTSGSRLFKNYQATKTDLYVKRLEDLGFIILGRSNTPEFGF-----KNISDSSLHGPVNLPFDNSRNAGGS  147 (482)
T ss_pred             CcccCC-CccCcchHHhcCCCCCcchHHHHHHHHCCCeEEEecCchHhhc-----CCCCCCcCCCCCCCCCCCCCCCCcC
Confidence             79997 9999999999999999999999999999999999999999999     7888999999999999999999999


Q ss_pred             CCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccc-cceeeeeeeccceeccCCCc
Q 036327          198 SSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTI-GDICLSLFISDAKVSSSNGS  276 (525)
Q Consensus       198 SgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~-GpmaRsV~~~D~a~~l~~~v  276 (525)
                      ||||||+||+|++|+|+|||||||||+|||||||||||||+||||..+..+.+++.|++ |||||||  +|+++++  ++
T Consensus       148 SgGsAaaVAaG~~~~aiGtDtgGSIRiPAa~cGvvGlKPT~Grvp~~~~~~~~~~~~~~~Gpiarsv--~D~a~~l--~~  223 (482)
T PRK06529        148 SGGAAALVSSGIVALAAASDGGGSIRIPASFNGLIGLKPSRGRIPVGPGSYRGWQGASVHFALTKSV--RDTRRLL--YY  223 (482)
T ss_pred             cHHHHHHHHcCCCceeeecCCCCCeecChHhhCceeEccCCCccCCCCCCccccccccccCCccCcH--HHHHHHH--HH
Confidence            99999999999999999999999999999999999999999999987765556666765 7999999  9999999  99


Q ss_pred             eeeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeee-ee-
Q 036327          277 SISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLE-IA-  354 (525)
Q Consensus       277 l~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~-~p-  354 (525)
                      |+|+|+.|+.+....   +...+    .....+++||||+.++++...++|+|+++++++++.|+++||+|+| ++ +| 
T Consensus       224 ~~g~~~~~~~~~~~~---~~~~~----~~~~~~~lrIg~~~~~~~~~~~~p~v~~a~~~a~~~L~~~G~~v~e-v~~~p~  295 (482)
T PRK06529        224 LQMYQMESPFPLATL---SKESL----FQSLQRPLKIAFYQRSPDGSPVSLDAAKALKQAVTFLREQGHEVVE-LEEFPL  295 (482)
T ss_pred             hhCCCCCCCcccCCc---ccchh----ccccCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE-cCCCCC
Confidence            999987775443210   00011    1112478999999875432358999999999999999999999987 54 34 


Q ss_pred             ceeeEeecccccchhhHHHHHHHHHHHHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCCCchhHHH
Q 036327          355 NIDVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAA  434 (525)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  434 (525)
                      +++...    ..++.++..|....+..+.... ..+.            .  .+   .+....+.....+..++..++..
T Consensus       296 ~~~~~~----~~~~~~~~~e~~~~~~~~~~~~-~~~~------------~--~~---~~~~~~~~~~~~g~~~~~~~~~~  353 (482)
T PRK06529        296 DMTEVM----RSYYIMNSVETAAMFDDIEDAL-GRPM------------T--KD---DMETMTWAIYQSGQDIPAKRYSQ  353 (482)
T ss_pred             CHHHHH----HHHHHHHHHHHHHHHHHHHHhc-CCCC------------C--hh---hcCHHHHHHHHHhhcCCHHHHHH
Confidence            222211    1122333444433332221100 0000            0  00   01111110111122233334444


Q ss_pred             HhhhhhcchhhhhhhhhhccccccccCCCC----------------------------------------------ccce
Q 036327          435 LLNLAKLSRDGFEKAMTVNKLDALVTPRSD----------------------------------------------IAPV  468 (525)
Q Consensus       435 ~~~~r~~~~~~~~~~~~~~~~DvLl~Pt~~----------------------------------------------~t~~  468 (525)
                      ..+.|..+++++.++|+  ++|+||+||++                                              ||.+
T Consensus       354 a~~~r~~~~~~~~~~f~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  431 (482)
T PRK06529        354 VLQKWDTYSATMASFHE--TYDLLLTFTTNTPAPKHGQLDPDSKLMANLAQAEIFSSEEQQNLVETMFEKSLAITPYTAL  431 (482)
T ss_pred             HHHHHHHHHHHHHHHHc--CCCEEEcCCCCCCCCCCCccCcccchhhhccccccccchhhhhhhhhhhhhhhhccccccc
Confidence            44455555677999997  69999999874                                              3457


Q ss_pred             eeecCCCCcccCCCCCCCCCcceeecCCccCCCcceEeeeeccccc
Q 036327          469 LAIGGFPGINVPAGYDTEGVPFGINFGGLRGTEPKLIEIAYGFEQA  514 (525)
Q Consensus       469 ~n~~G~PaisvP~G~~~~GlPvGlQivg~~~~D~~LL~~A~~lE~~  514 (525)
                      ||++|+|++|||+|+..+|||+||||+|++|+|++||++|++||++
T Consensus       432 ~Nl~G~PaisvP~g~~~~GlPvGlQlvg~~~~D~~lL~~a~~le~~  477 (482)
T PRK06529        432 ANLTGQPAISLPTYETKEGLPMGVQLIAAKGREDLLLGIAEQFEAA  477 (482)
T ss_pred             ccccCCCeEEeecCcCCCCCceeEEEecCCCcHHHHHHHHHHHHhc
Confidence            8999999999999998899999999999999999999999999986


No 24 
>PRK07235 amidase; Provisional
Probab=100.00  E-value=7.6e-93  Score=757.92  Aligned_cols=447  Identities=24%  Similarity=0.303  Sum_probs=354.1

Q ss_pred             eeeeeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhh
Q 036327           36 AFSIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVL  114 (525)
Q Consensus        36 ~~~~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~  114 (525)
                      .+++.++++.+++++++ +++++.|+++++++||+..++..|++....+| +...|...+.+   .+|+..||||||||+
T Consensus        19 ~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~---~~g~~~gpL~GvPia   94 (502)
T PRK07235         19 GLDLTDEELASYLSLMQ-ASLDAYDRIDELPDEIPPVKYPRTPGYRPEAEENPYGAWYVKTS---IKGAAEGKLAGKTVA   94 (502)
T ss_pred             CCCCChhhHHHHHHHHH-hccCHHHHHHHHhhcccccCCCcccccccCcccChhcChhhhhc---cCCCCCCCcCCceEE
Confidence            35788999999999999 99999999999999999999999999999988 88888887765   468889999999999


Q ss_pred             hhhhhcccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCC
Q 036327          115 LKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADP  194 (525)
Q Consensus       115 vKD~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~  194 (525)
                      |||||+++| ++||+||..+++++|.+||++|+|||+|||||+||||||||++     +..+.|++||+|+||||++|+|
T Consensus        95 vKD~i~v~G-~ptt~Gs~~~~~~~p~~DA~vV~rL~~AGAii~GKTn~~Ef~~-----~~~t~n~~~G~t~NP~~~~~~~  168 (502)
T PRK07235         95 LKDNVAVAG-VPMMNGSSTLEGFVPSFDATVVTRLLDAGATIVGKATCEDLCF-----SGGSHTSDPGPVHNPRDPGYSA  168 (502)
T ss_pred             EecccccCC-cccCccChhhcCCCCCCCHHHHHHHHHCCCEEEEEecchhhhc-----CCCCCCCCCCCCCCCCCCCCCC
Confidence            999999997 9999999999999999999999999999999999999999999     7788999999999999999999


Q ss_pred             CCCCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccCC
Q 036327          195 CGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSN  274 (525)
Q Consensus       195 GGSSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~  274 (525)
                      |||||||||+||+|++++|+||||||||||||+||||||||||+||||+.|++|+++++|++|||||||  +|+++++  
T Consensus       169 GGSSgGsAAaVAaG~v~~aiGtDtGGSIRiPAa~cGvvGlKPT~G~vp~~G~~~~~~sld~~Gpmarsv--~D~a~ll--  244 (502)
T PRK07235        169 GGSSSGSAALVAAGEVDMAIGGDQGGSIRIPSAWCGIYGMKPTHGLVPYTGAFPIERTIDHLGPMTATV--RDNALLL--  244 (502)
T ss_pred             CCCcHHHHHHHHcCCCCeEEecCCCCCcCccHHHcCcceecCCCcccCCCCCCCcccccCeeeceeCCH--HHHHHHH--
Confidence            999999999999999999999999999999999999999999999999999999999999999999999  9999999  


Q ss_pred             CceeeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeeee
Q 036327          275 GSSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIA  354 (525)
Q Consensus       275 ~vl~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p  354 (525)
                      ++|+|+|+.|+.+...+   +..+|...+. ...+++||||+.+.+....++++|+++++++++.|+++|++|++ +++|
T Consensus       245 ~viag~d~~d~~~~~~~---~~~~~~~~l~-~~~~~lrIgv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~V~~-v~~p  319 (502)
T PRK07235        245 EVIAGRDGLDPRQPAQP---PVDDYTAALD-RGVKGLKIGILREGFGLPNSEPEVDEAVRAAAKRLEDLGATVEE-VSIP  319 (502)
T ss_pred             HHHcCCCCCCccccccC---CccchhHHhc-cCCcCCEEEEeccccCCCCCCHHHHHHHHHHHHHHHHCCCEEEE-eCCC
Confidence            99999999886654311   2224655443 45788999999876542357999999999999999999999987 6766


Q ss_pred             ceeeEeecccccchhhHHHHHHHHHHHHHHHHh-hchhh-----hHHHHHhhcccccchHHHHHhhhhhhhhhhhcc---
Q 036327          355 NIDVILNATASGEATALVAEFKLALNAYVKELV-ASPVR-----SLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATN---  425 (525)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  425 (525)
                      .......    . +.++..+....  ..+.... ....+     .+.+.......    +....++.........+.   
T Consensus       320 ~~~~~~~----~-~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~  388 (502)
T PRK07235        320 LHRLALA----I-WNPIATEGATA--QMMLGNGYGFNWKGLYDTGLLDAFGAGWR----ERADDLSETVKLVMLLGQYGL  388 (502)
T ss_pred             chhhHHH----H-HHHHHHHHHHH--HhhhccccccccccccchhHHHHHhhhhh----cchhhcCHHHHHHHHhccccc
Confidence            4321111    0 11111111100  0000000 00000     00011100000    011123333221111111   


Q ss_pred             -CCCchhHHHHhhhhhcchhhhhhhhhhccccccccCCCC-------------------------ccceeeecCCCCccc
Q 036327          426 -GIGNTEKAALLNLAKLSRDGFEKAMTVNKLDALVTPRSD-------------------------IAPVLAIGGFPGINV  479 (525)
Q Consensus       426 -~~~~~~~~a~~~~r~~~~~~~~~~~~~~~~DvLl~Pt~~-------------------------~t~~~n~~G~Paisv  479 (525)
                       .++..++...++.|+.+++.++++|+  ++|+||+||+|                         +|.+||++|+|++||
T Consensus       389 ~~~~~~~y~~a~~~r~~~~~~~~~~~~--~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~Palsv  466 (502)
T PRK07235        389 ERYHGRYYAKARNLARRLRAAYDEALR--KYDLLVMPTTPMVATPLPAPDASREEYVSRALEMIANTAPFDVTGHPAMSV  466 (502)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHh--cCCEEeeCCCCCCCCCcccccCchHHHHHHHHhhhccCccchhhCCCeEEE
Confidence             23334444445556666778999997  69999999975                         356789999999999


Q ss_pred             CCCCCCCCCcceeecCCccCCCcceEeeeeccccce
Q 036327          480 PAGYDTEGVPFGINFGGLRGTEPKLIEIAYGFEQAT  515 (525)
Q Consensus       480 P~G~~~~GlPvGlQivg~~~~D~~LL~~A~~lE~~~  515 (525)
                      |+|+. +|||+||||||++|+|++||++|++||++.
T Consensus       467 P~g~~-~GlPvGlQlvg~~~~D~~lL~~A~~~E~~~  501 (502)
T PRK07235        467 PCGLV-DGLPVGLMLVGRHFDEATILRAAAAFEASG  501 (502)
T ss_pred             ECCcC-CCCCeEEEEeCCCCCHHHHHHHHHHHHhhh
Confidence            99995 899999999999999999999999999864


No 25 
>PRK05962 amidase; Validated
Probab=100.00  E-value=2.2e-92  Score=742.78  Aligned_cols=395  Identities=23%  Similarity=0.314  Sum_probs=322.7

Q ss_pred             HHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhhhhhhhcccccCCCCcccceeecccc-
Q 036327           62 VQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTAGSFALLGSVV-  139 (525)
Q Consensus        62 ~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD~~~~~gg~~tt~Gs~~~~~~~~-  139 (525)
                      ++++|+||+++|+.+|||+++++| |+++|+++|+++  ++|+.+||||||||+|||||+++| ++||+||..++++++ 
T Consensus         1 ~~~~l~ri~~~~~~lna~~~~~~~~al~~A~~~d~~~--~~g~~~gpL~GvPi~vKD~~~v~G-~~tt~Gs~~~~~~~~~   77 (424)
T PRK05962          1 LEATLARLAARAGEEHVFSKLYAERARAEADAADARR--RAGRSLGPLDGRIVSIKDLFDVAG-EPTLAGSVIRRDAPPA   77 (424)
T ss_pred             CHHHHHHHHhhCCcccEEEEECHHHHHHHHHHHHHHH--HcCCCCCCCCCCEEEEEeeeecCC-cccCCCChhhhcCCCC
Confidence            468999999999999999999999 999999999998  788889999999999999999997 999999999999988 


Q ss_pred             ccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCCCCCCCCceeeeeeeeeeeecccCC
Q 036327          140 ARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANLVAVSLGTETD  219 (525)
Q Consensus       140 ~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~p~alGtDtg  219 (525)
                      .+||++|+|||++|||++||||||||++     +..+.|++||+|+||||++|+|||||||||||||+|++++|+|||||
T Consensus        78 ~~dA~vV~rL~~aGAiilGKTn~~E~~~-----~~~~~n~~~G~t~NP~~~~~~~GGSSgGsAaaVAaG~~~~alGtDtg  152 (424)
T PRK05962         78 GADALIVQRLRNAGAVIIGKTHMTEFAF-----TPVGLNPHYGEPGNAIDPARIPGGSSSGAAVSVAEGTSEIAIGSDTG  152 (424)
T ss_pred             cCChHHHHHHHHCCCEEEEecCchHHhc-----CCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEEeeCCC
Confidence            6899999999999999999999999999     78899999999999999999999999999999999999999999999


Q ss_pred             CeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccCCCceeeeecCCcccccceeeeecchH
Q 036327          220 GSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGSSISVDYNDPATKAASYYIPYGGY  299 (525)
Q Consensus       220 GSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~~vl~g~d~~d~~~~~~~~~~p~~~~  299 (525)
                      ||||+||+||||||||||+||||+.|++|+++++|++|||||||  +|+++++  ++|.|+|+.|...            
T Consensus       153 GSiRiPAa~cGv~GlKPT~G~v~~~G~~~~~~s~d~~Gp~arsv--~D~~~~~--~vl~g~~~~~~~~------------  216 (424)
T PRK05962        153 GSVRIPAALNGLVGFKPTARRIPLEGAFPLSPSLDSIGPLARTV--ADCAAAD--AVMAGEKPIPLEV------------  216 (424)
T ss_pred             CcchhhhHhhCceeeecCCCceeCCCcccCccccCccccccCCH--HHHHHHH--HHHcCCCCCcccc------------
Confidence            99999999999999999999999999999999999999999999  9999999  9999987654210            


Q ss_pred             HHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeeeeceeeEeecccccchhhHHHHHHHHH
Q 036327          300 KQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANIDVILNATASGEATALVAEFKLAL  379 (525)
Q Consensus       300 ~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~~~~~~~~~~~~~~~~~~e~~~~~  379 (525)
                            ...+++|||++.+++.. .++++|+++++++++.|+++||+|++ +++|++.+..... .....+...|....+
T Consensus       217 ------~~~~~lrig~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~~~~~~~~~~~-~~~~~~~~~e~~~~~  287 (424)
T PRK05962        217 ------LPVAGLRIGLPKGYLLA-DMEPDVAAAFEASLAALEKAGARIAD-LAIDDLIARLAEA-TRIGSIAGIEASHIH  287 (424)
T ss_pred             ------cCcCCcEEEEEcccccc-cCCHHHHHHHHHHHHHHHHCCCEEEE-eccchHHHHHHHH-HHHhHHHHHHHHHHH
Confidence                  12467999999876543 58999999999999999999999987 5665321110000 000012222332222


Q ss_pred             HHHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCCCchhHHHHhhhhhcchhhhhhhhhhccccccc
Q 036327          380 NAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAALLNLAKLSRDGFEKAMTVNKLDALV  459 (525)
Q Consensus       380 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~~~~~~~~~~~~~~DvLl  459 (525)
                      ..++..                       ....+++...........++..++...++.|..+++.+.++|+  ++|+||
T Consensus       288 ~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~--~~D~ll  342 (424)
T PRK05962        288 ADWLAD-----------------------LDANVDIRVKRPLSRRIKVPLEAYHRLMRTRAALARAMDERLA--GFDMFA  342 (424)
T ss_pred             HHHHhh-----------------------chhhCCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHhc--CCCEEE
Confidence            221110                       0011222222121222233444444445555556777999997  699999


Q ss_pred             cCCCC-------------------------ccceeeecCCCCcccCCCCCCCCCcceeecCCccCCCcceEeeeeccccc
Q 036327          460 TPRSD-------------------------IAPVLAIGGFPGINVPAGYDTEGVPFGINFGGLRGTEPKLIEIAYGFEQA  514 (525)
Q Consensus       460 ~Pt~~-------------------------~t~~~n~~G~PaisvP~G~~~~GlPvGlQivg~~~~D~~LL~~A~~lE~~  514 (525)
                      +||++                         ||.++|++|+|++|||+|.  +|||+||||+|++|+|++||++|++||++
T Consensus       343 ~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~G~Pa~svP~g~--~glPvGlqlvg~~~~D~~lL~~a~~le~~  420 (424)
T PRK05962        343 LPATPIVAPTIASVSEDEEEYDRVENLLLRNTQVANQFDLCSITLPMPG--MALPAGLMLTARNGSDRRLLAAAASVEKL  420 (424)
T ss_pred             eCCCCCCCCCccccccchHHHHHHHHHHHhhCcCccccCCCeEEEECCC--CCCCEEEEEECCCCCHHHHHHHHHHHHHH
Confidence            99875                         2456799999999999984  69999999999999999999999999998


Q ss_pred             ee
Q 036327          515 TM  516 (525)
Q Consensus       515 ~~  516 (525)
                      +.
T Consensus       421 l~  422 (424)
T PRK05962        421 LE  422 (424)
T ss_pred             hc
Confidence            74


No 26 
>PF01425 Amidase:  Amidase;  InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence. They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include:  Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....
Probab=100.00  E-value=3.7e-91  Score=740.10  Aligned_cols=404  Identities=32%  Similarity=0.459  Sum_probs=309.5

Q ss_pred             hhHHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhhhhhhhcccccCCCCcccceeeccc
Q 036327           60 QLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTAGSFALLGSV  138 (525)
Q Consensus        60 ev~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD~~~~~gg~~tt~Gs~~~~~~~  138 (525)
                      ||+++||+||+++|+.+||+++++++ |+++|+++|+++  ++|+.++|||||||+|||+|+++| ++||+||..+.+.+
T Consensus         1 e~~~~~~~ri~~~~~~~na~~~~~~~~a~~~A~~~d~~~--~~~~~~~pL~Gip~~vKD~~~~~g-~~tt~G~~~~~~~~   77 (441)
T PF01425_consen    1 ELVEAYLARIEAYNPELNAFVEVDFDEALAQARELDARR--ARGKPRGPLHGIPISVKDNIDVAG-LPTTAGSPALADNP   77 (441)
T ss_dssp             HHHHHHHHHHHHHHHHH--EEEEEHHHHHHHHHHHHHHH--HTTSSSSTTTT-EEEEETTBSBTT-SBB-TTSGGGTTBB
T ss_pred             CHHHHHHHHHHHhCcccCEEEEECcHHHHHHHHHHHHHH--hhcCCCCCCCCCceeccccccccc-cccccccccccCcC
Confidence            79999999999999999999999998 999999999998  789999999999999999999997 99999999999999


Q ss_pred             cccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCCCCCCCCceeeeeeeeeeeecccC
Q 036327          139 VARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANLVAVSLGTET  218 (525)
Q Consensus       139 ~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~p~alGtDt  218 (525)
                      +++||.+|++||+||||++||||||||++     +..+.|+.||+|+||||+.++|||||||||++||+|++++|+||||
T Consensus        78 ~~~~a~~v~~L~~aGai~~gkt~~~e~~~-----~~~~~~~~~g~~~Np~~~~~~~GGSS~Gsaaavaag~~~~a~GtDt  152 (441)
T PF01425_consen   78 PTEDAPVVQRLRAAGAIIIGKTNMPEFAM-----GPTTSNPLYGRTRNPWNPSRTPGGSSGGSAAAVAAGFVPLAIGTDT  152 (441)
T ss_dssp             BSSS-HHHHHHHHTT-EEEEEE--SGGGC-----SSSSTTTTTEE-EBTTBTTBE--SSSHHHHHHHHTTSSSEEEEEES
T ss_pred             cccccchhhheecccccceeeecccceec-----cccccccccccccCcccccccccccccccccccceecccccccccc
Confidence            99999999999999999999999999999     7889999999999999999999999999999999999999999999


Q ss_pred             CCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccCCCceeeeecCCcccccceeeeecch
Q 036327          219 DGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGSSISVDYNDPATKAASYYIPYGG  298 (525)
Q Consensus       219 gGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~~vl~g~d~~d~~~~~~~~~~p~~~  298 (525)
                      |||||+||+||||||||||+|+||++|++|+++++|++|||||||  +|+++++  ++|+|++++|..+...+  .+...
T Consensus       153 gGSiR~PAa~~Gv~GlkPT~G~vs~~G~~~~~~~~d~~GpmaRsv--~Dl~~~l--~vl~g~~~~d~~~~~~~--~~~~~  226 (441)
T PF01425_consen  153 GGSIRIPAAFCGVVGLKPTRGRVSRDGVFPLSPSFDTVGPMARSV--EDLALLL--DVLAGPDPWDPDSLPVP--PPPPD  226 (441)
T ss_dssp             SSTTHHHHHHHTSEEEE-STTSS--TTB-CSSTTT-EEEEEESSH--HHHHHHH--HHHBSCBTTBTTSCSTT----SS-
T ss_pred             cccccCchhccccceeccccccccccccccccccccccccccCcH--HHHHHHH--HHhcCCCccCCCccccc--ccccc
Confidence            999999999999999999999999999999999999999999999  9999999  99999999885544311  01111


Q ss_pred             HHHHHHHhccCCceeeeeeCCc-cccCCcchhHHHHHHHHHHHhhccceeeeeeeeeceeeEeecccccchhhHHHHHHH
Q 036327          299 YKQFLKLYGLKGKRLGIVRNPF-FNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANIDVILNATASGEATALVAEFKL  377 (525)
Q Consensus       299 ~~~~~~~~~~~~lrIGv~~~~~-~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~~~~~~~~~~~~~~~~~~e~~~  377 (525)
                      +... ....++++||||+.+++ +. .++++++++++++++.|+++|++|++ +++|++++...    .+..++..|+..
T Consensus       227 ~~~~-~~~~~~~lrIGv~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~vv~-~~~p~~~~~~~----~~~~~~~~e~~~  299 (441)
T PF01425_consen  227 FDAP-LPKSLKGLRIGVPRDDGQWV-PVDPEVRRAFEEAAEALEAAGAEVVE-VDLPDLDEAMD----AYYRIFVSEGAA  299 (441)
T ss_dssp             CSTT-TTSTTTT-EEEEEGGGG-SS-TSSHHHHHHHHHHHHHHHHTT-EEEE-E--TTGGHHHH----HHHHHHHHHHHH
T ss_pred             cccc-ccccccCccccccccccccc-cccHHHHHHHHHHHHhhccccccccc-ccCchHHHHHH----HHhhhHHHHHHH
Confidence            2211 23567899999999876 44 68999999999999999999999998 68876654322    122333444443


Q ss_pred             HHH------HHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhh--hccCCCchhHHHHhhhhhcchhhhhhh
Q 036327          378 ALN------AYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQ--ATNGIGNTEKAALLNLAKLSRDGFEKA  449 (525)
Q Consensus       378 ~~~------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~r~~~~~~~~~~  449 (525)
                      .+.      .++.....   ..+.+                .....+....  ........++...++.+..+++.+.++
T Consensus       300 ~~~~~~~~~~~~~~~~~---~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~  360 (441)
T PF01425_consen  300 NLARYKDFARLLAKWRD---PPLSP----------------IVRSRLEQGAAISSAEDDSEYYLQAQRRRARLRRRFDEL  360 (441)
T ss_dssp             HHTTTCSHHHHHHHHHH---HHSHH----------------HHHHHHHHHHHHHCTTTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHhhhcccc---ccccc----------------chhhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            321      11110000   00000                0000111100  111111223444455555567789999


Q ss_pred             hhhccccccccCCCC---------------------------ccceeeecCCCCcccCCCCCCCCCcceeecCCccCCCc
Q 036327          450 MTVNKLDALVTPRSD---------------------------IAPVLAIGGFPGINVPAGYDTEGVPFGINFGGLRGTEP  502 (525)
Q Consensus       450 ~~~~~~DvLl~Pt~~---------------------------~t~~~n~~G~PaisvP~G~~~~GlPvGlQivg~~~~D~  502 (525)
                      |++  +|+||+|+++                           +|.++|++|+|+++||+|+..+|||+||||+|++|+|+
T Consensus       361 ~~~--~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~g~PaisvP~g~~~~GlPvGvqlvg~~~~D~  438 (441)
T PF01425_consen  361 FEE--YDALLTPTTPVPAPPIGEPSPLGPDYTALWNLLDFTAYTSPANLAGLPAISVPVGFDPDGLPVGVQLVGRPGSDE  438 (441)
T ss_dssp             HHH--SSEEEEESSSSS-BBTTTTCCCTSCHHHHHHHHTTTTTTHHHHHHTHHEEEEEEEEETTTEEEEEEEEESTTBHH
T ss_pred             Hhh--cceecccCCCcCCCccccccccccchhhhhhhhhhhccccccccccCcceeeecCCCCCCcCEeEEEECCCCCcc
Confidence            984  9999999875                           24689999999999999999899999999999999999


Q ss_pred             ceE
Q 036327          503 KLI  505 (525)
Q Consensus       503 ~LL  505 (525)
                      +||
T Consensus       439 ~LL  441 (441)
T PF01425_consen  439 KLL  441 (441)
T ss_dssp             HHH
T ss_pred             CcC
Confidence            986


No 27 
>TIGR02713 allophanate_hyd allophanate hydrolase. Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.
Probab=100.00  E-value=9.4e-87  Score=714.79  Aligned_cols=389  Identities=27%  Similarity=0.355  Sum_probs=309.6

Q ss_pred             eeeeEeCc-c-hhccccchhhhhcccCCCceecccCchhhhhhhhcccccCCCCcccceeeccccccccceeeeeeccce
Q 036327           77 NAVIEVNP-D-ALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGA  154 (525)
Q Consensus        77 na~~~~~~-~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGa  154 (525)
                      |+|+++.. | ++++|+++|+++  ++|. .+|||||||+||||||++| ++||+||+.+. ++|.+||++|+|||+|||
T Consensus         2 ~a~i~~~~~e~al~~A~~ld~~~--~~~~-~~PL~GvP~aVKD~idvaG-~pTTaGs~~~~-~~p~~DA~vV~rLr~AGA   76 (561)
T TIGR02713         2 EAWISLLSEEDLLAQAAALDARD--ARPE-RLPLYGVPFAVKDNIDVAG-LPTTAACPAFA-YTPEEDATVVALLRAAGA   76 (561)
T ss_pred             cEEEEeCCHHHHHHHHHHHHHHH--hcCC-CCCccCCeEEEEcccccCC-CccCcCCHhHc-CCCCcCHHHHHHHHHCCC
Confidence            68999865 6 999999999987  5565 5899999999999999997 99999999986 789999999999999999


Q ss_pred             eEeeccccccccccccccCCCCcccCCCCCCCceeeecCCCCCCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeee
Q 036327          155 IIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGI  234 (525)
Q Consensus       155 Ii~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~Gl  234 (525)
                      |++||||||||++     +..|.|++||+|+||||++|+|||||||||+|||+|++++|+||||||||||||+|||||||
T Consensus        77 IiiGKTN~~Efa~-----g~~g~n~~~G~t~NP~d~~~~~GGSSsGSAaAVAaG~v~~alGTDtgGSiRiPAa~cGlvGl  151 (561)
T TIGR02713        77 IVVGKTNLDQFAT-----GLVGTRSPYGAVRNAFDPAYISGGSSSGSAVAVARGLVPFALGTDTAGSGRVPAALNNIVGL  151 (561)
T ss_pred             EEEEEeCchHhhc-----CCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHcCCCceEEeecCCCcchhhhHHhCceeE
Confidence            9999999999998     78899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccceecCCCCccccceeeeeeeccceeccCCCceeeeecCCcccccceeeeecchHHHHHHHhccCCceee
Q 036327          235 KPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGSSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLG  314 (525)
Q Consensus       235 KPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~~vl~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIG  314 (525)
                      |||+|+||+.|++|.++++|++|||||||  +|+++++  ++|.|+|+.|+.+...    |.   . .+. ...+++|||
T Consensus       152 KPT~G~vs~~Gv~p~~~slD~vG~~Arsv--~D~~~~l--~v~~g~d~~d~~s~~~----p~---~-~~~-~~~~~lrig  218 (561)
T TIGR02713       152 KPTKGLVSTTGVVPACRSLDCVSIFALTV--ADAEQVL--RIAAAPDARDPYSRPL----PA---A-ALR-RLPPPPRVG  218 (561)
T ss_pred             ecCCCCccCCCccccccCCCeeechhCCH--HHHHHHH--HhhcCCCCcCccccCC----Cc---h-hhc-ccCCCCEEE
Confidence            99999999999999999999999999999  9999999  9999999988665432    21   0 011 224678999


Q ss_pred             eeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeeeeceeeEeecccccchhhHHHHHHHHHHHHHHHHhhchhhhH
Q 036327          315 IVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANIDVILNATASGEATALVAEFKLALNAYVKELVASPVRSL  394 (525)
Q Consensus       315 v~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~  394 (525)
                      |+..+......+++++++++++++.|+++|++|++ ++++.+.+....   .+...+..|....+..++.          
T Consensus       219 v~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v~~-v~~~~~~~~~~~---l~~~~~~~e~~~~~~~~~~----------  284 (561)
T TIGR02713       219 VPRAAQLEFFGDSQAEAAFAAAVERLEALGVEVVE-IDFAPFLETAAL---LYEGPWVAERYAAVGEFVE----------  284 (561)
T ss_pred             EECchhcCCCCCHHHHHHHHHHHHHHHHCCCEEEE-ecchhHHHHHHH---HHHHHHHHHHHHHHHHHHh----------
Confidence            99732211124789999999999999999999987 676643211100   0011122232222222221          


Q ss_pred             HHHHhhcccccchHHHHHhhhhhhhhhhhccCCCchhHHHHhhhhhcchhhhhhhhhhccccccccCCCC----------
Q 036327          395 AEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAALLNLAKLSRDGFEKAMTVNKLDALVTPRSD----------  464 (525)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~~~~~~~~~~~~~~DvLl~Pt~~----------  464 (525)
                              .++  +   .+.+...........++..++...++.++.+++.++++|+  ++|+||+||++          
T Consensus       285 --------~~~--~---~~~p~~~~~l~~g~~~sa~~~~~a~~~r~~l~~~~~~~~~--~~DvLl~Pt~p~~~~~~~~~~  349 (561)
T TIGR02713       285 --------AQP--D---ALDPVVRGIITSATRFSAADAFAAQYRLAALRRKAEALLA--GVDVLLVPTAPTHPTIEEVLA  349 (561)
T ss_pred             --------hCh--h---hcCHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHh--cCCEEEeCCCCCCCCchhccC
Confidence                    010  1   1112111111122233433333334445555677999997  69999999975          


Q ss_pred             -----------ccceeeecCCCCcccCCCCCCCCCcceeecCCccCCCcceEeeeeccccceec
Q 036327          465 -----------IAPVLAIGGFPGINVPAGYDTEGVPFGINFGGLRGTEPKLIEIAYGFEQATMI  517 (525)
Q Consensus       465 -----------~t~~~n~~G~PaisvP~G~~~~GlPvGlQivg~~~~D~~LL~~A~~lE~~~~~  517 (525)
                                 ||.++|++|+|+++||+|+..+|||+||||+|++|+|++||++|+.||++.++
T Consensus       350 ~~~~~~~~~~~yT~~~Nl~glPAisvP~g~~~~GlPvGvqlig~~~~D~~LL~~A~~le~~~~~  413 (561)
T TIGR02713       350 DPVGLNSRLGTYTNFVNLLDLCAVAVPAGFRSDGLPFGVTLIGPAFHDAALASLGRRLQAASAL  413 (561)
T ss_pred             CchhhhhhhhcccccccccCCceEEeecccCCCCCCEEEEEEcCCCChHHHHHHHHHHHhccCc
Confidence                       46789999999999999998899999999999999999999999999998765


No 28 
>PRK07139 amidase; Provisional
Probab=100.00  E-value=7.5e-84  Score=679.87  Aligned_cols=402  Identities=21%  Similarity=0.206  Sum_probs=302.8

Q ss_pred             hHHhhhhhhhhccccceeeeEeCcchhccccchhhhhcccCCCceecccCchhhhhhhhcccccCCCCcccceeeccccc
Q 036327           61 LVQFYIGEIRRLNPVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTAGSFALLGSVVA  140 (525)
Q Consensus        61 v~~~~l~ri~~~~~~lna~~~~~~~al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD~~~~~gg~~tt~Gs~~~~~~~~~  140 (525)
                      ..+.+|+|++.  ..+|++++...+..               ...||||||||+|||||+++| ++||+||..+++++|.
T Consensus         7 ~~~~~~~~~~~--~~~~~~~~~~~~~~---------------~~~gpL~GvPvavKD~~~v~G-~~tt~Gs~~l~~~~~~   68 (439)
T PRK07139          7 NFQKALEELKN--DKNNAVSYVFDEKN---------------NKDGPLANCVFTIKDNFATSE-GPTHASSKSLENFKPS   68 (439)
T ss_pred             hHHHHHHHhhc--cccCeEEEEecccC---------------CCCCCcCCcEEEEEcceecCC-CccCcChHHHccCCCC
Confidence            56777888765  46899988754411               125799999999999999997 9999999999999999


Q ss_pred             cccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCCCCCCCCceeeeeeeeeeeecccCCC
Q 036327          141 RDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANLVAVSLGTETDG  220 (525)
Q Consensus       141 ~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~p~alGtDtgG  220 (525)
                      +||++|+|||+||||++||||||||++     +..+.|++||+|+||||++|+||||||||||+||+| +++|+||||||
T Consensus        69 ~dA~vV~rLr~AGAIilGKTn~~Efa~-----~~~~~n~~~G~t~NP~~~~~~pGGSSgGSAAaVAag-~~~alGtDtgG  142 (439)
T PRK07139         69 YNATVVQKLINAGAKPVAKVHCDELGL-----GGTGLFSAFGLIKNPLDSSKLVGGSSSGSAATFNKN-ISFAIGSDTGD  142 (439)
T ss_pred             CchHHHHHHHHCCCEEEEeechhhHhc-----CCCCCCCCCCCcCCCCCCCCCCCCCchHHHHHHHCC-CCEEEEcCCCc
Confidence            999999999999999999999999999     788899999999999999999999999999999997 69999999999


Q ss_pred             eeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccCCCceeeeecCCcccccceeeeecchHH
Q 036327          221 SILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGSSISVDYNDPATKAASYYIPYGGYK  300 (525)
Q Consensus       221 SiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~~vl~g~d~~d~~~~~~~~~~p~~~~~  300 (525)
                      |||+|||||||||||||+||||+.|++|+++++|++|||||+|  +|+++++  ++|+|+|+.|+.+...    |...+ 
T Consensus       143 SIRiPAa~cGvvGlKPT~G~vs~~G~~p~~~sld~~Gp~arsv--~D~a~~~--~vl~g~d~~d~~~~~~----~~~~~-  213 (439)
T PRK07139        143 SVRLPASFIGKVGFKPSYGAISRYGLFAYASSLDTVAYFTHNV--NDAIILS--KVLFGKDENDLTSVDV----KINNV-  213 (439)
T ss_pred             chhhhHHHcCeEEEeCCCCCcCCCCcccCcccCCccccccCCH--HHHHHHH--HHHcCCCcCCcccccc----Ccccc-
Confidence            9999999999999999999999999999999999999999999  9999999  9999999888665432    21111 


Q ss_pred             HHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeeeeceeeEeecccccchhhHHHHHHHHHH
Q 036327          301 QFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANIDVILNATASGEATALVAEFKLALN  380 (525)
Q Consensus       301 ~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~~~~~~~~~~~~~~~~~~e~~~~~~  380 (525)
                           ..++++|||+... + . .++++++++++++++.|+++|++|++ +++|..  ........+..+...|....+.
T Consensus       214 -----~~~~~lrig~~~~-~-~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~~~~--~~~~~~~~~~~~~~~e~~~~~~  282 (439)
T PRK07139        214 -----KKTKPKKVAYLDC-F-K-ELEEYVAKKYKKLINILKSENIEVEK-IKIDEK--LLKAIKPVYKIISYSEASSNLA  282 (439)
T ss_pred             -----cccCCCEEEEECc-c-c-cCCHHHHHHHHHHHHHHHHCCCEEEE-eCCChh--HHHHHHHHHHHHHHHHHHHHHH
Confidence                 2457899999743 2 2 57999999999999999999999987 565521  0000000111222233333332


Q ss_pred             HHHHHHhh--chhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCCC-----chhHHHHhhhhhcchhhhhhhhhhc
Q 036327          381 AYVKELVA--SPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIG-----NTEKAALLNLAKLSRDGFEKAMTVN  453 (525)
Q Consensus       381 ~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~a~~~~r~~~~~~~~~~~~~~  453 (525)
                      ++......  .....+.+++....       ...++............+.     ..++....+.|+..++.+.++|+  
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~r~~~~~~~~~~f~--  353 (439)
T PRK07139        283 NLNGIAFGNREKGSSWEEIMINTR-------SEGFGKMVQKRLILGSYFLEEENQEKYFLKAKKVRRVIKNYYESIHN--  353 (439)
T ss_pred             hhcccccccccccccHHHHHHhcc-------hhccCHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            22110000  00011111111000       0112222211111111111     12233334455555677999997  


Q ss_pred             cccccccCCCCc-------------------cceeeecCCCCcccCCCCCCCCCcceeecCCccCCCcceEeeeeccccc
Q 036327          454 KLDALVTPRSDI-------------------APVLAIGGFPGINVPAGYDTEGVPFGINFGGLRGTEPKLIEIAYGFEQA  514 (525)
Q Consensus       454 ~~DvLl~Pt~~~-------------------t~~~n~~G~PaisvP~G~~~~GlPvGlQivg~~~~D~~LL~~A~~lE~~  514 (525)
                      ++|+||+||++.                   +.++|++|+|+||||+| ..+|||+||||+|++|+|.+||++|++||++
T Consensus       354 ~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g-~~~glPiGlqivg~~~~D~~LL~~A~~lE~~  432 (439)
T PRK07139        354 KFDIVIYPAYADIAPDIDENENKSDNYMDYILTISNLVGNPSLSIPLG-KYNNLPFNLAIDSKIYDDEKLLSYSLYIEEL  432 (439)
T ss_pred             cCCEEEeCCCCCCCCcccccccchhhhhhhcccCcccCCCCeEEEeCC-CCCCCCeEEEEECCCCChHHHHHHHHHHHHH
Confidence            599999999762                   35689999999999999 6789999999999999999999999999998


Q ss_pred             ee
Q 036327          515 TM  516 (525)
Q Consensus       515 ~~  516 (525)
                      ++
T Consensus       433 ~~  434 (439)
T PRK07139        433 IK  434 (439)
T ss_pred             hc
Confidence            75


No 29 
>PRK08310 amidase; Provisional
Probab=100.00  E-value=1.3e-82  Score=662.90  Aligned_cols=364  Identities=26%  Similarity=0.299  Sum_probs=286.5

Q ss_pred             ccceeeeEeCcchhccccchhhhhcccCCCceecccCchhhhhhhhcccccCCCCcccceeec--cccccccceeeeeec
Q 036327           74 PVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTAGSFALLG--SVVARDAGVVMKLRK  151 (525)
Q Consensus        74 ~~lna~~~~~~~al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD~~~~~gg~~tt~Gs~~~~~--~~~~~da~~V~~Lr~  151 (525)
                      +.+|||+.....        +     ..|+..||||||||+|||||+++| ++||+||..+.+  .++.+||++|+|||+
T Consensus         5 ~~~~a~~~~~~~--------~-----~~~~~~gpL~GvPi~vKD~~~v~G-~~tt~Gs~~~~~~~~~~~~dA~vV~~L~~   70 (395)
T PRK08310          5 DPFNAFIAKPDK--------P-----LPHAASGPLAGLRFAVKDVFDVAG-YVTGCGNPDWLAESPVATRTAPAVEKLLA   70 (395)
T ss_pred             CccccccccCCC--------C-----CCCCCCCCcCCCeEEEeeccccCC-CccCCCCHHHHhcCCCCCCCHHHHHHHHH
Confidence            458898877421        1     235667899999999999999997 999999999844  677899999999999


Q ss_pred             cceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCCCCCCCCceeeeeeeeeeeecccCCCeeeccCCCCce
Q 036327          152 AGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSV  231 (525)
Q Consensus       152 aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv  231 (525)
                      ||||++||||||||++     +..+.|++||+|+||||++|+|||||||||||||+|++++|+|||||||||+||+||||
T Consensus        71 aGAii~GKTn~~E~~~-----~~~~~n~~~G~t~NP~~~~~~pGGSSgGsAaaVAag~~~~aiGtDtGGSIRiPAa~cGv  145 (395)
T PRK08310         71 AGARFVGKTQTDELAF-----SLNGQNAHYGTPVNPAAPDRVPGGSSSGSAAAVAGGLADFALGTDTGGSVRAPASFCGL  145 (395)
T ss_pred             CCCEEEEeccchHHhc-----CCCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHcCCcceEEecCCCCCeecchHhcCe
Confidence            9999999999999999     77889999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecccccccccccceecCCCCccccceeeeeeeccceeccCCCceeeeecCCcccccceeeeecchHHHHHHHhccCCc
Q 036327          232 VGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGSSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGK  311 (525)
Q Consensus       232 ~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~~vl~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~l  311 (525)
                      ||||||+||||+.|+.|+++++|++|||||+|  +|+++++  ++|.|.|+.+.                      ..++
T Consensus       146 ~G~KPT~Grvs~~G~~~~~~~~d~~Gp~arsv--~D~~~~~--~~l~g~~~~~~----------------------~~~~  199 (395)
T PRK08310        146 YGLRPTHGRISLEGVMPLAPSFDTVGWFARDI--ALLERVG--EVLLGDDAQEF----------------------PLTQ  199 (395)
T ss_pred             eEeecCCCcccCCCCcccccCCCeeeeeeCCH--HHHHHHH--HHHcCCCcccC----------------------CcCc
Confidence            99999999999999999999999999999999  9999999  99999876541                      0236


Q ss_pred             eeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeeeec--eeeEeecccccchhhHHHHHHHHHHHHHHHHhhc
Q 036327          312 RLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIAN--IDVILNATASGEATALVAEFKLALNAYVKELVAS  389 (525)
Q Consensus       312 rIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p~--~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~  389 (525)
                      ||++..+.+ . .++++++++++++++.|+++|.+|++ ++.+.  ++...    ..+..+...|....+..+.+.    
T Consensus       200 ri~~~~~~~-~-~~~~~v~~a~~~a~~~L~~~~g~vv~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----  268 (395)
T PRK08310        200 RLLIPVDLF-A-LLDPAVRAALEAALARLRPHLGPAKP-ASVPPLSLDEWY----EAFRVLQAAEAWETHGAWISS----  268 (395)
T ss_pred             eEEEecccc-c-cCCHHHHHHHHHHHHHHHHhCCceee-ecCCcccHHHHH----HHHHHHHHHHHHHHHHHHHHh----
Confidence            899986643 3 58999999999999999986447766 44331  11110    011112222322222211110    


Q ss_pred             hhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCCCchhHHHHhhhhhcchhhhhhhhhhccccccccCCCC-----
Q 036327          390 PVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAALLNLAKLSRDGFEKAMTVNKLDALVTPRSD-----  464 (525)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~~~~~~~~~~~~~~DvLl~Pt~~-----  464 (525)
                                    +     ...+.+...........++..++....+.|+.+++.+.++|+  ++|+||+|+++     
T Consensus       269 --------------~-----~~~~~~~~~~~~~~g~~~~~~~~~~a~~~r~~~~~~~~~~~~--~~Dvll~Pt~~~~a~~  327 (395)
T PRK08310        269 --------------G-----NPQLGPGVADRFAAGAEVTADQVEAARARRAAFARELAALLG--PDAVLLLPTVPGAAPL  327 (395)
T ss_pred             --------------c-----hhhcCHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEeCCCCCCCcc
Confidence                          0     011222221111222334444444445556656777999997  69999999975     


Q ss_pred             -----------------ccceeeecCCCCcccCCCCCCCCCcceeecCCccCCCcceEeeeeccccce
Q 036327          465 -----------------IAPVLAIGGFPGINVPAGYDTEGVPFGINFGGLRGTEPKLIEIAYGFEQAT  515 (525)
Q Consensus       465 -----------------~t~~~n~~G~PaisvP~G~~~~GlPvGlQivg~~~~D~~LL~~A~~lE~~~  515 (525)
                                       ||.+||++|+|+++||+|. .+|||+||||+|++++|++||++|++||++.
T Consensus       328 ~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisvP~g~-~~glPvglQivg~~~~D~~lL~~a~~le~~~  394 (395)
T PRK08310        328 RGAPFEALEAYRERALRLLCIAGLAGLPQISLPLAS-VDGAPFGLSLIGPRGSDRSLLALAQTIAAAR  394 (395)
T ss_pred             CCCccchHHHHHHHHHhhceeehhcCCCeEEEECCC-CCCCCEEEEEECCCCCHHHHHHHHHHHHhhh
Confidence                             3568999999999999997 5799999999999999999999999999864


No 30 
>PLN02722 indole-3-acetamide amidohydrolase
Probab=100.00  E-value=2.9e-82  Score=662.73  Aligned_cols=383  Identities=22%  Similarity=0.274  Sum_probs=289.1

Q ss_pred             cccceeeeEeCcchhccccchhhhhcccCCCceecccCchhhhhhhhcccccCCCCcccceeec-cc-cccccceeeeee
Q 036327           73 NPVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNTTAGSFALLG-SV-VARDAGVVMKLR  150 (525)
Q Consensus        73 ~~~lna~~~~~~~al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD~~~~~gg~~tt~Gs~~~~~-~~-~~~da~~V~~Lr  150 (525)
                      |..+|||++....     +.       ..+...||||||||+|||||+++| ++||+||+.+.+ ++ +.+||++|+|||
T Consensus         4 ~~~~~a~~~~~~~-----~~-------~~~~~~gpL~GvPiaVKD~~~v~G-~~Tt~GS~~~~~~~~~~~~dA~vV~rL~   70 (422)
T PLN02722          4 NPDYGAFMEKFVL-----SP-------TSSSHDLPLHGLTFAVKDIFDVEG-YVTGFGNPDWARTHSAATSTAPAVLAVL   70 (422)
T ss_pred             CCCCCcceeeccc-----cC-------CCCCCCCCCCCCeEEEEcccccCC-CccCCCCHHHHhcCCCCCCChHHHHHHH
Confidence            4568999987421     10       112346899999999999999997 999999998875 44 578999999999


Q ss_pred             ccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCCCCCCCCceeeeeeeeeeeecccCCCeeeccCCCCc
Q 036327          151 KAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNS  230 (525)
Q Consensus       151 ~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~G  230 (525)
                      +||||++|||||+||++     +..|.|++||+|+||||+.|+|||||||||||||+|++|+|+|||||||||+||||||
T Consensus        71 ~AGAiilGKTn~~Efa~-----~~~g~n~~~G~t~NP~~~~r~pGGSSsGSAaAVAaG~~p~AlGtDtgGSIRiPAa~cG  145 (422)
T PLN02722         71 RGGATCVGKTIMDEMAY-----SINGENAHYGTPTNPIAPDRVPGGSSSGSAVAVGAKLVDFSLGTDTGGSVRVPASYCG  145 (422)
T ss_pred             HCCCEEEEEechhhHhh-----CCCCCCCCCCCCCCCCCCCCCCCcCcHHHHHHHHcCCCceEeecCCCcccccChhHcc
Confidence            99999999999999999     7889999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecccccccccccceecCCCCccccceeeeeeeccceeccCCCceeeeecCCcccccceeeeecchHHHHHHHhccCC
Q 036327          231 VVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGSSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKG  310 (525)
Q Consensus       231 v~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~~vl~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~  310 (525)
                      |||||||+|+||+.|++|+++++|++|||||+|  +|+++++  ++|.|+++.|.                      ...
T Consensus       146 vvG~KPT~G~vp~~G~~pla~sld~~G~~ar~v--~D~a~~~--~~l~g~~~~d~----------------------~~~  199 (422)
T PLN02722        146 IFGFRPSHGAVSTVGVIPMAQSFDTVGWFARDP--VILKRVG--HVLLQQPDVNP----------------------IKP  199 (422)
T ss_pred             eEEEecCCCccCCCCCCcccCCCCcccceeCCH--HHHHHHH--HHHcCCCCCCC----------------------cCC
Confidence            999999999999999999999999999999999  9999999  99999876551                      134


Q ss_pred             ceeeeeeCCccc-cCCcchhHHHHHHHHHHHhhccceeeeeeeeec-eeeEeecccc--------cchhhHHHHHHHHHH
Q 036327          311 KRLGIVRNPFFN-FDKGSALTQAFNYHLQTLRQQGAVLVDYLEIAN-IDVILNATAS--------GEATALVAEFKLALN  380 (525)
Q Consensus       311 lrIGv~~~~~~~-~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p~-~~~~~~~~~~--------~~~~~~~~e~~~~~~  380 (525)
                      +||++..+.+.. ...++++.++++++++.|+++|++|++ ++++. .+.....+..        ....+...+......
T Consensus       200 ~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  278 (422)
T PLN02722        200 SQIIIAEDCFQLSSIPHDRLVQVLVKSVEKLFGGGDIVKH-VNLGDYVEDKVPSLKHFMSKEIKEQEYNIPSLAALSSAM  278 (422)
T ss_pred             ceEEechhhhhhcccccHHHHHHHHHHHHHHhcCCCeeee-cchhHHHHHhHHHHHHHhhcccccceecchhHHHHHHHH
Confidence            799998765431 134688999999999999999999876 45531 1110000000        000000000000000


Q ss_pred             HHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCCCchhHHHHhhhhhcchhhhhhhhhhcccccccc
Q 036327          381 AYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAALLNLAKLSRDGFEKAMTVNKLDALVT  460 (525)
Q Consensus       381 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~~~~~~~~~~~~~~~~DvLl~  460 (525)
                      .++...  +......+++.        .....+++.+..+......++..++...++.|..+++++.++|+  ++|+||+
T Consensus       279 ~~~~~~--e~~~~~~~~~~--------~~~~~~~~~v~~~~~~g~~~s~~~y~~a~~~r~~~~~~~~~~~~--~~D~Ll~  346 (422)
T PLN02722        279 RLLQRY--EFKINHGEWIT--------AVKPEFGPGISERIWEAVRTTEEKIDACQSVKTELRAALTTLLG--EFGVLVI  346 (422)
T ss_pred             HHHHHH--HHHHHHHHHHH--------hhhhhCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEe
Confidence            000000  00001111110        11123444444444444455555555555556666778999997  6999999


Q ss_pred             CCCC----------------------ccceeeecCCCCcccCCCCCCCCCcceeecCCccCCCcceEeeeecccc
Q 036327          461 PRSD----------------------IAPVLAIGGFPGINVPAGYDTEGVPFGINFGGLRGTEPKLIEIAYGFEQ  513 (525)
Q Consensus       461 Pt~~----------------------~t~~~n~~G~PaisvP~G~~~~GlPvGlQivg~~~~D~~LL~~A~~lE~  513 (525)
                      ||+|                      +|.++|++|+|+||||+|+. +|||+||||+|++++|.+||++|+.|.+
T Consensus       347 Pt~p~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~glPvGlqivg~~~~D~~lL~~a~~l~~  420 (422)
T PLN02722        347 PTVPGPPPKLQADPTTLESFRARAFSLLSIAGVSGFCQVSIPLGLH-DNLPVSVSLLAKHGSDGFLLNLVESLYG  420 (422)
T ss_pred             CCCCCCCCCcccCcchHHHHHHHHHHhhhcccccCCCEEEEeCCCC-CCCCEEEEEECCCCChHHHHHHHHHHHh
Confidence            9986                      24689999999999999987 7999999999999999999999988764


No 31 
>KOG1211 consensus Amidases [Translation, ribosomal structure and biogenesis]
Probab=100.00  E-value=1e-77  Score=617.64  Aligned_cols=437  Identities=30%  Similarity=0.415  Sum_probs=347.1

Q ss_pred             hhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcchhccccchhhhhcccCCCceecccCchhhhhhhhcccccCCC-Cc
Q 036327           51 FRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIGTKDKQNT-TA  129 (525)
Q Consensus        51 ~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD~~~~~gg~~t-t~  129 (525)
                      +.+|.+++.++++.+++++...++..+.+..++++++.+|++.|.++  +++...+||+||||+|||||+++| ++| |+
T Consensus        27 l~~~~l~~~~~ie~~l~~~~~~~~~~~~i~~~~~~~~~~a~~~~~~~--~~~~~~~~L~Gv~i~IKDnf~tk~-~~t~t~  103 (506)
T KOG1211|consen   27 LSSGLLTSKRIIESYLERINKWKPLNAKITVINEEALKQAEEVTRRR--KNGMEKGPLQGVPIAIKDNFDTKD-KPTTTA  103 (506)
T ss_pred             hcccccchHHHHHHHHHHHhhcccccceeeeccHHHHHHhhhccccc--cCCCcCCCcCCceEEEeeceecCC-ccCCch
Confidence            89999999999999999999999988888888888999999999988  889999999999999999999997 898 99


Q ss_pred             ccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCCCCCCCCceeeeeee
Q 036327          130 GSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSGPAISVAANL  209 (525)
Q Consensus       130 Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgGsaaaVAag~  209 (525)
                      +|..+.++.++.||++|++||++||||+|||||+||+|     +..+.+.+||+|+|||++.+.|||||||||+|||+++
T Consensus       104 ~S~~l~~~~~p~dAtVV~~L~~aGaiilGKTnmdEfam-----g~~~~~s~~G~t~np~~~~~v~GGSS~GSA~aVaa~l  178 (506)
T KOG1211|consen  104 ASWMLEHYNPPKDATVVKKLREAGAIILGKTNMDEFAM-----GSSGENSHYGTTRNPLSLWRVPGGSSSGSAAAVAAGL  178 (506)
T ss_pred             hhhhhccCCCccccHHHHHHhhcCceEEccccHHHHhh-----ccccccccCCccCCCCcccccCCCCcchhHHHHHhcc
Confidence            99999999999999999999999999999999999999     7788899999999999999999999999999999999


Q ss_pred             eeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccCCCceeeeecCCccccc
Q 036327          210 VAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGSSISVDYNDPATKA  289 (525)
Q Consensus       210 ~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~~vl~g~d~~d~~~~~  289 (525)
                      |++|+|||||||+|+||++|||+|||||+|++|+.|++|++.++|++||+||+|  .|+..++  +++.|.|..|..+..
T Consensus       179 ~~~alGtDTgGSvR~PAa~~gvvG~KPT~G~~Sr~Gvip~~~SlD~vGi~a~tv--~D~~~v~--~~~~g~d~~d~~t~~  254 (506)
T KOG1211|consen  179 CDFALGTDTGGSVRVPAAYCGVVGFKPTYGRVSRFGVIPLSNSLDTVGIFARTV--YDAVEVL--GAIVGIDELDSTTLA  254 (506)
T ss_pred             chhhccccCCCCccCcHHhcCccccccCcceecccccchhhhcccccchhhccc--chhHHHh--hhhcCCCccCccccc
Confidence            999999999999999999999999999999999999999999999999999999  9999999  999999999977664


Q ss_pred             ceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeeeeceeeEeecccccchh
Q 036327          290 ASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANIDVILNATASGEAT  369 (525)
Q Consensus       290 ~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~~~~~~~~~~~~~~  369 (525)
                      .+.  +..-........++.++|+|+++.+.+. ..+.++.+.+++..+.|...|..+.+ +.+|.......    .+..
T Consensus       255 ~p~--~~~~~~~~~~~~~l~~~r~GIp~~~~~~-~~~~~v~~~~~~~~~~l~~~~~~~~~-~~lp~~~~~~~----~~~~  326 (506)
T KOG1211|consen  255 QPA--PFPIVLELIGSMDLSGLRIGIPKERLVQ-GLSSGVLSLWEELADLLGSLGAKVNE-VSLPTTINGLC----GYSL  326 (506)
T ss_pred             CCc--ccccchhhcccccccccccCceeecccc-cccHHHHHHHHHHHHHhhccccccee-eecchhhhccc----cccc
Confidence            421  1011122233347789999999998765 46789999999999999999998887 67776543332    1222


Q ss_pred             hHHHHHHHHHHHHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhh-----ccCCCchhHHHHhhhhhcchh
Q 036327          370 ALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQA-----TNGIGNTEKAALLNLAKLSRD  444 (525)
Q Consensus       370 ~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~a~~~~r~~~~~  444 (525)
                      ....|...++.+|-.-+.....  ..+...  .......+...+..+...+...     ......++....++.|+..++
T Consensus       327 ~s~~ea~s~laryd~~~~~~r~--~~~~~~--~~v~~~~rs~~~n~~v~~~i~~g~~~l~~~~~~~~f~~a~~~rr~i~~  402 (506)
T KOG1211|consen  327 SSASEAASNLARYDGILYGHRR--DFKVAD--EEVYALSRSFGFNFEVKGRILSGNYILAKENDQDYFEKALEVRRLIQE  402 (506)
T ss_pred             cchhhhhhhHHHHHHHHhhcch--hhhhcc--ceeeeeccccccchhhcceeeccceehhhhhhHHHHHHHHHHHHHHHH
Confidence            2335555555554322111110  000000  0000000000011111000000     111234455555666666555


Q ss_pred             hhh---hhhhhccccccccCCCC---------------------ccceeeecCCCCcccCCCCCCCCCcceeecCCccCC
Q 036327          445 GFE---KAMTVNKLDALVTPRSD---------------------IAPVLAIGGFPGINVPAGYDTEGVPFGINFGGLRGT  500 (525)
Q Consensus       445 ~~~---~~~~~~~~DvLl~Pt~~---------------------~t~~~n~~G~PaisvP~G~~~~GlPvGlQivg~~~~  500 (525)
                      .+.   ..++  ++|+|++||.+                     ++.++|++|+|+|+||+|+..+|+|+|||++|..|+
T Consensus       403 ~~~~~~~~~~--~vD~l~~pt~~~~~~~~~~~~~~~~~~~~~~~~~~~anlaGlP~isiP~G~~~~g~P~glqi~g~~~~  480 (506)
T KOG1211|consen  403 DFNRRKAALE--GVDYLVTPTAPPPLYREFEKETLFAVSTLDDIFTQPANLAGLPAISIPVGLKNGGLPIGLQIMGGAFA  480 (506)
T ss_pred             hhhhcccccc--cCCeeeccCCCCcchhhhhhcccccccccccceeecccccCCCceEEeeeecCCCCceEEEeeccccc
Confidence            555   4444  79999999865                     356899999999999999999999999999999999


Q ss_pred             CcceEeeeecccc
Q 036327          501 EPKLIEIAYGFEQ  513 (525)
Q Consensus       501 D~~LL~~A~~lE~  513 (525)
                      |.+++.++.++|+
T Consensus       481 e~~~~~l~~~~~~  493 (506)
T KOG1211|consen  481 EPTLIDLALAIGQ  493 (506)
T ss_pred             chHHHHHHHhhcc
Confidence            9999999999998


No 32 
>KOG1212 consensus Amidases [Translation, ribosomal structure and biogenesis; Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00  E-value=3.1e-76  Score=611.94  Aligned_cols=465  Identities=21%  Similarity=0.243  Sum_probs=346.8

Q ss_pred             hcccccccceeeeeeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCc
Q 036327           26 ATSTKTANSYAFSIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGS  104 (525)
Q Consensus        26 ~~~~~~~~~~~~~~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~  104 (525)
                      ..++..++...-.+..+++.+|+++|++|++||+|++.+|++|+...|+.+||++++..| ++.+|+..|..+  ..+..
T Consensus        39 ~~~~~~ld~~~~~il~~~~~~L~~~L~~~e~~~~~vl~Ay~~Ra~~vn~~lNcV~~~i~e~~~~~a~~~d~~~--~~~~~  116 (560)
T KOG1212|consen   39 KSTAPKLDTTRNAILKLDATELAQALQSGELTSVEVLCAYCHRAIEVNQKLNCVVEFIFEAALQAAALDDEYT--APLYE  116 (560)
T ss_pred             cccCcccchHHHHHhhcCHHHHHHHHHhCcCcHHHHHHHHHHHHHHhccCcceeeeehhhHHHHHhhchhhhh--chhcc
Confidence            334444555334578899999999999999999999999999999999999999999999 777777777665  55556


Q ss_pred             eecccCchhhhhhhhcccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCC
Q 036327          105 LVGLRGIPVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQG  184 (525)
Q Consensus       105 ~gpL~GvPi~vKD~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t  184 (525)
                      .+||+||||+|||+|.++| +.+|.|.....+.+.++|+.+|+.||++|||++.+||+||+.+     +..+.|+.||+|
T Consensus       117 k~PL~GvP~SvKe~~~vkg-~d~T~G~~~~~~~~a~~ds~~V~~lk~~GaIpf~~TnvPq~~l-----s~~tsn~v~G~T  190 (560)
T KOG1212|consen  117 KPPLYGVPFSVKESISVKG-YDSTAGLLARTNQPATTDSVIVEFLKKLGAIPFVLTNVPQSLL-----SYETSNPVYGTT  190 (560)
T ss_pred             cCCceecceehhhheeecC-ccccchhhhccCCCCccchHHHHHHHHcCCCceeecCCchhhh-----hhhhcCCCCCCC
Confidence            7899999999999999997 9999999999999999999999999999999999999999999     788899999999


Q ss_pred             CCceeeecCCCCCCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCC----Ccccccee
Q 036327          185 KNPYVLSADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPR----QDTIGDIC  260 (525)
Q Consensus       185 ~NP~~~~~~~GGSSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~----~d~~Gpma  260 (525)
                      +||||.+|+|||||||+||++++|.++||||||+||||||||+|||++|+|||.+|+|..|..+..+.    +-++|||+
T Consensus       191 ~NP~d~~rt~GGSSGGEaALigaggS~lGiGsDigGSiRiPa~f~Gl~GlKPT~~r~~~~G~~~~~~g~~~~~~~~GPm~  270 (560)
T KOG1212|consen  191 KNPYDLSRTPGGSSGGEAALLGAGGSLLGIGSDIGGSIRIPAAFCGLFGLKPTPGRVSVKGHHPSVPGRETIMLVIGPMT  270 (560)
T ss_pred             CChhhccCCCCCCchHHHHHHhCCcceeccccccCCceeechhhccccccCCCCCeeeecCcCCCCCcccccccccCccc
Confidence            99999999999999999999999999999999999999999999999999999999999998876543    34789999


Q ss_pred             eeeeeccceeccCCCceeeee-cC--CcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHH
Q 036327          261 LSLFISDAKVSSSNGSSISVD-YN--DPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHL  337 (525)
Q Consensus       261 RsV~~~D~a~~l~~~vl~g~d-~~--d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~  337 (525)
                      |+|  +|+..+|  ..+++.+ ++  |+...+       ..|.+... ...++++||+..++.+. ++.|.+++|+.+.+
T Consensus       271 r~v--~dl~~~L--~~~i~~~~~~~~~p~~~p-------~~~~~~~y-~~~~~~~ig~~~~dg~~-~~~pa~~RAv~~~~  337 (560)
T KOG1212|consen  271 RDV--EDLVLLL--RLMIGDSGPKLLDPYPVP-------VKFMEVFY-KSSDKLVIGYYVDDGFF-DPSPAMQRAVQETI  337 (560)
T ss_pred             ccH--HHHHHHH--HHhcCCccccccCCCCCC-------chhhhhhh-hccCCccceEEecCCCC-CcCHHHHHHHHHHH
Confidence            999  9999999  9999855 22  222221       12444333 34567999998777765 68999999999999


Q ss_pred             HHHhhccceeeeeeeeeceeeEeecccccchhhHHHHHHHHHH-HHHHHHhhchhhhHHHHHhhccc--ccchHHH-HHh
Q 036327          338 QTLRQQGAVLVDYLEIANIDVILNATASGEATALVAEFKLALN-AYVKELVASPVRSLAEVIAFNEK--FSDIEKI-EEF  413 (525)
Q Consensus       338 ~~L~~~G~~Vve~~~~p~~~~~~~~~~~~~~~~~~~e~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~  413 (525)
                      +.|++.||++++ +++|+++...+.    +.. ...+-...+. .|..+ ...+  .......+..-  +. .... ..+
T Consensus       338 ~~l~~~g~~~~~-f~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~l~~~~-~~~~l~~~  407 (560)
T KOG1212|consen  338 DLLEKAGHEVVP-FDLPDLKHVADM----FFR-VMPDDGDYISEMYLLD-IGDP--TLNLFVKFVELPKVF-LGRSLHSY  407 (560)
T ss_pred             HHHHhcCcceeE-ecCCcchHHHHH----HHH-HcccccchhhHHhhcc-cCcc--ccchheeeeeccHHH-Hhhhhhhh
Confidence            999999999997 788876532211    000 0111111110 01100 0001  00000000000  00 0000 000


Q ss_pred             hhhhhhhhhhccCCCchhHHHHhhhhhcchhhhhhhhhhccccccccCCCC-----------------ccceeeecCCCC
Q 036327          414 GQDIFLAAQATNGIGNTEKAALLNLAKLSRDGFEKAMTVNKLDALVTPRSD-----------------IAPVLAIGGFPG  476 (525)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~a~~~~r~~~~~~~~~~~~~~~~DvLl~Pt~~-----------------~t~~~n~~G~Pa  476 (525)
                      .. .+..+...........+..+..++.+|.++...+...+.||||||+.+                 ||.+||++|+||
T Consensus       408 ~~-~~~~i~~~~~~~~~~~~~~~~~~e~yrlk~~~~~~~~~~dVll~Ps~~~pA~~h~~P~~~~~~~~Yt~LfN~Ld~Pa  486 (560)
T KOG1212|consen  408 IV-LPFCIMDAKNSDTAELRQNYEDIESYRLKFILYWLLGKDDVLICPSFPTPAPPHNYPLLLVNGFSYTGLFNVLDFPA  486 (560)
T ss_pred             Hh-HHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHcCCCCEEEeCCCCCCCCcCCCchhhccchhHHHHHHhccCCc
Confidence            00 000111111111111222222233334445555555689999999975                 578999999999


Q ss_pred             cccCCCC--------------------------CCCCCcceeecCCccCCCcceEeeeeccccceeccCCCC
Q 036327          477 INVPAGY--------------------------DTEGVPFGINFGGLRGTEPKLIEIAYGFEQATMIRKPPS  522 (525)
Q Consensus       477 isvP~G~--------------------------~~~GlPvGlQivg~~~~D~~LL~~A~~lE~~~~~~~~P~  522 (525)
                      .+||++.                          +..|||+|||+|+.+|+|+.+|++|+.+|+.+..+.+|.
T Consensus       487 g~vpvt~v~~~d~~~~~~~~~D~~~~~~~~g~~~s~GlPigVQVVa~p~~delcL~va~~lE~~~gg~~~p~  558 (560)
T KOG1212|consen  487 GVVPVTTVTQKDEKEEEYPMNDKWATKVPKGSLDSRGLPIGVQVVANPNQDELCLAVARELERKFGGWVRPG  558 (560)
T ss_pred             ccccccccchhhhcccccccccHHHHhCcccccCCCCCceeEEEecCCCchHHHHHHHHHHHHHhCCccCCC
Confidence            9888863                          367999999999999999999999999999988666654


No 33 
>PF11268 DUF3071:  Protein of unknown function (DUF3071);  InterPro: IPR021421  Some members in this family of proteins are annotated as DNA-binding proteins however this cannot be confirmed. Currently no function is known. 
Probab=35.30  E-value=24  Score=32.32  Aligned_cols=32  Identities=16%  Similarity=0.263  Sum_probs=27.9

Q ss_pred             ccchhhhhhHhhhhhhhhhhhHHhh---hhhhhhcc
Q 036327           41 EATIEGIQLAFRQNQLASRQLVQFY---IGEIRRLN   73 (525)
Q Consensus        41 ~~s~~~l~~~~~~g~~s~~ev~~~~---l~ri~~~~   73 (525)
                      .++..||++.||+|. |++||.+.+   ++||+++.
T Consensus        56 ~L~PReIQarIRaGa-s~eeVA~~~G~~~~rV~rfa   90 (170)
T PF11268_consen   56 SLRPREIQARIRAGA-SAEEVAEEAGVPVERVRRFA   90 (170)
T ss_pred             CCCHHHHHHHHHCCC-CHHHHHHHhCCCHHHhhhcc
Confidence            789999999999995 999999998   67777664


No 34 
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=27.27  E-value=26  Score=38.09  Aligned_cols=39  Identities=23%  Similarity=0.278  Sum_probs=27.7

Q ss_pred             CCceeeecccccccccccceecCCCCccccceeeeeeecccee
Q 036327          228 SNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKV  270 (525)
Q Consensus       228 ~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~  270 (525)
                      .|||-|++|-.-.=|.   +....++|+.|||+|.= +.|+|-
T Consensus       383 AcGv~girpGtycepk---mttVGSQDTTGpMTrdE-lk~lAc  421 (852)
T COG1049         383 ACGVPGIRPGTYCEPK---MTTVGSQDTTGPMTRDE-LKDLAC  421 (852)
T ss_pred             ccCCccccCCCcccce---eeeeccccCCCCccHHH-HHHHHh
Confidence            6999999987654442   33446899999999974 356553


No 35 
>PF14359 DUF4406:  Domain of unknown function (DUF4406)
Probab=24.11  E-value=1.1e+02  Score=24.88  Aligned_cols=25  Identities=28%  Similarity=0.274  Sum_probs=21.3

Q ss_pred             cchhHHHHHHHHHHHhhccceeeee
Q 036327          326 GSALTQAFNYHLQTLRQQGAVLVDY  350 (525)
Q Consensus       326 ~~~v~~a~~~a~~~L~~~G~~Vve~  350 (525)
                      +..-+.+|.++.+.|++.|++|+.+
T Consensus        11 ~~~N~~~f~~~a~~L~~~G~~vvnP   35 (92)
T PF14359_consen   11 PDYNRPAFNAAAKRLRAKGYEVVNP   35 (92)
T ss_pred             cchHHHHHHHHHHHHHHCCCEEeCc
Confidence            3556899999999999999999753


No 36 
>PF14237 DUF4339:  Domain of unknown function (DUF4339)
Probab=23.96  E-value=28  Score=24.10  Aligned_cols=22  Identities=14%  Similarity=0.288  Sum_probs=18.8

Q ss_pred             ccchhhhhhHhhhhhhhhhhhH
Q 036327           41 EATIEGIQLAFRQNQLASRQLV   62 (525)
Q Consensus        41 ~~s~~~l~~~~~~g~~s~~ev~   62 (525)
                      -.|..+|.+++++|+|++..+|
T Consensus        13 P~s~~el~~l~~~g~i~~~tlv   34 (45)
T PF14237_consen   13 PFSLEELRQLISSGEIDPDTLV   34 (45)
T ss_pred             CcCHHHHHHHHHcCCCCCCCeE
Confidence            4578999999999999987765


No 37 
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=20.92  E-value=69  Score=27.39  Aligned_cols=18  Identities=11%  Similarity=0.348  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHhhccceee
Q 036327          331 QAFNYHLQTLRQQGAVLV  348 (525)
Q Consensus       331 ~a~~~a~~~L~~~G~~Vv  348 (525)
                      +-+++|+++|+++||+|.
T Consensus       110 ~dLekAv~~L~eaGhev~  127 (128)
T COG3603         110 EDLEKAVKALEEAGHEVL  127 (128)
T ss_pred             hhHHHHHHHHHHcCCccc
Confidence            468899999999999984


Done!