Query 036327
Match_columns 525
No_of_seqs 294 out of 1622
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 19:54:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036327.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036327hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m22_A Peptide amidase, PAM; e 100.0 7E-106 2E-110 861.6 -0.7 471 35-525 4-494 (503)
2 3ip4_A Glutamyl-tRNA(Gln) amid 100.0 2E-104 7E-109 846.7 -4.9 450 38-520 2-481 (485)
3 3h0l_A Glutamyl-tRNA(Gln) amid 100.0 1E-102 3E-107 830.2 -4.3 447 39-524 2-478 (478)
4 3kfu_E Glutamyl-tRNA(Gln) amid 100.0 5E-101 2E-105 814.8 -5.2 435 42-520 1-464 (471)
5 2dc0_A Probable amidase; struc 100.0 5E-100 2E-104 801.8 -4.5 405 42-515 1-433 (434)
6 3a2q_A 6-aminohexanoate-cyclic 100.0 1.9E-99 6E-104 810.5 -4.3 431 36-518 3-477 (493)
7 2gi3_A Glutamyl-tRNA(Gln) amid 100.0 8E-99 3E-103 802.4 -4.7 437 36-522 4-468 (476)
8 3ppm_A Fatty-acid amide hydrol 100.0 1.8E-96 6E-101 792.2 -6.6 444 36-522 65-573 (573)
9 1o9p_A Malonamidase E2; malona 100.0 8.8E-95 3E-99 756.6 -3.2 393 42-516 2-411 (414)
10 3a1k_A Amidase; AS family enzy 100.0 9.3E-95 3.2E-99 775.9 -7.6 452 41-520 12-507 (521)
11 3shg_B VBHA; ampylation, adeny 39.4 14 0.0005 26.3 1.9 28 44-71 32-59 (61)
12 2do1_A Nuclear protein HCC-1; 21.9 28 0.00094 24.5 0.8 39 34-72 5-43 (55)
13 1zrj_A E1B-55KDA-associated pr 21.7 31 0.0011 23.7 1.0 39 34-72 5-43 (50)
No 1
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=100.00 E-value=7e-106 Score=861.58 Aligned_cols=471 Identities=42% Similarity=0.660 Sum_probs=392.7
Q ss_pred eeeeeeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhcc---ccceeeeEeCcchhccccchhhhhcccCCCceecccCc
Q 036327 35 YAFSIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLN---PVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGI 111 (525)
Q Consensus 35 ~~~~~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~---~~lna~~~~~~~al~~A~~~d~~~~~~~g~~~gpL~Gv 111 (525)
..|++.++|+.+|+++|++|++|++||+++||+||+++| +.+|||+++++||+++|+++|+++ ++|+..||||||
T Consensus 4 ~~~~~~~~~~~~l~~~l~~g~~s~~el~~a~l~ri~~~~~~~~~lna~~~~~~~Al~~A~~~d~~~--~~g~~~gpL~Gv 81 (503)
T 1m22_A 4 VPFPYAETDVADLQARMTAGELDSTTLTQAYLQRIAALDRTGPRLRAVIELNPDALKEAAERDRER--RDGRLRGPLHGI 81 (503)
T ss_dssp -CCTTTTCCHHHHHHHHHTTSCCHHHHHHHHHHHHHHHTTSTTCCCCEEEECTTHHHHHHHHHHHH--HTTCCCSTTTTC
T ss_pred CCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHHHHHHHHHH--HcCCCCCCcCCc
Confidence 467888999999999999999999999999999999999 999999999988999999999988 788888999999
Q ss_pred hhhhhhhhcccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeee
Q 036327 112 PVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLS 191 (525)
Q Consensus 112 Pi~vKD~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~ 191 (525)
||+|||||+++| ++||+||..+.++++ +||++|+|||+|||||+||||||||+++.++.+..++|++||+|+||||++
T Consensus 82 Pi~vKD~~~v~G-~~Tt~Gs~~~~~~~~-~dA~vV~rLr~AGAii~GKTn~~Efa~~~~~~~~~~~n~~~G~t~NP~~~~ 159 (503)
T 1m22_A 82 PLLLKDNINAAP-MATSAGSLALQGFRP-DDAYLVRRLRDAGAVVLGKTNLSEWANFRGNDSISGWSARGGQTRNPYRIS 159 (503)
T ss_dssp EEEEETTBCCTT-SCCCTTCGGGTTCCC-CCCHHHHHHHHTTCEEEEEECCSHHHHCSCTTCCTTEETTTEECCCTTSTT
T ss_pred eeEeecccccCC-CCcCCCCHhhcCCCC-CCcHHHHHHHHCCCEEEeccCHHHHhcccCCCCCCCCCCCCCCCCCCCCCC
Confidence 999999999997 999999999999999 999999999999999999999999998655546789999999999999999
Q ss_pred cCCCCCCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceec
Q 036327 192 ADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVS 271 (525)
Q Consensus 192 ~~~GGSSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~ 271 (525)
|+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++||||||| +|++++
T Consensus 160 ~~pGGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~arsv--~D~a~~ 237 (503)
T 1m22_A 160 HSPCGSSSGSAVAVAANLASVAIGTETDGSIVCPAAINGVVGLKPTVGLVSRDGIIPISFSQDTAGPMARSV--ADAAAV 237 (503)
T ss_dssp BCCCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHTTSEEEECCTTSSCCTTBCCSCTTTCEEEEEESSH--HHHHHH
T ss_pred CCCCccHHHHHHHHHcCCCceeeecCCCchhhhhHHHhCceEEECCCCCcCCCCcCCccCCCCeeCcccCCH--HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cCCCceeeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeee
Q 036327 272 SSNGSSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYL 351 (525)
Q Consensus 272 l~~~vl~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~ 351 (525)
+ ++|+|+|+.|+.+...+. .+..+|...+....++++||||+.+++ . ++++++++++++++.|+++||+|++ +
T Consensus 238 l--~vl~g~d~~d~~~~~~~~-~~~~~~~~~~~~~~~~~lrIgv~~~~~-~--~~~~v~~a~~~a~~~L~~~G~~v~~-~ 310 (503)
T 1m22_A 238 L--TAIAGRDDADPATATMPG-RAVYDYTARLDPQGLRGKRIGLLQTPL-L--KYRGMPPLIEQAATELRRAGAVVVP-V 310 (503)
T ss_dssp H--HHHCCCCTTCGGGGGCTT-CCCCCGGGGCCTTTTTTCEEEEECSGG-G--GSTTHHHHHHHHHHHHHHTTCEEEE-E
T ss_pred H--HHHcCCCCCCcccccccc-ccccchhhhccccCCCCCEEEEECccc-c--CCHHHHHHHHHHHHHHHHcCCEEEE-e
Confidence 9 999999999976543210 011234433322246889999998754 2 7999999999999999999999997 6
Q ss_pred eeeceeeEeecccccchhhHHHHHHHHHHHHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCCC-ch
Q 036327 352 EIANIDVILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIG-NT 430 (525)
Q Consensus 352 ~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 430 (525)
++|.++++. ..++.++.+|+..++..|+.... .+.+++.+++.+++.++. +....+++..+.+......++ .+
T Consensus 311 ~~p~~~~~~----~~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 384 (503)
T 1m22_A 311 ELPNQGAWA----EAERTLLLYEFKAGLERYFNTHR-APLRSLADLIAFNQAHSK-QELGLFGQELLVEADATAGLADPA 384 (503)
T ss_dssp CCTTTTTTH----HHHHHHHHHHHHHHHHHHHHHTT-CSCCSHHHHHHHHHHTHH-HHSSSSCCHHHHHHHTCCCTTCHH
T ss_pred CCCcHHHHH----HHHHHHHHHHHHHHHHHHHHhcC-cccccHHHHHHHhhhcch-hcccccCHHHHHHHHhcCCCCHHH
Confidence 877543221 12345667888888888876542 334455555544322210 111124444444444333344 34
Q ss_pred hHHHHhhhhhcchhh-hhhhhhhccccccccCCCC---------------ccceeeecCCCCcccCCCCCCCCCcceeec
Q 036327 431 EKAALLNLAKLSRDG-FEKAMTVNKLDALVTPRSD---------------IAPVLAIGGFPGINVPAGYDTEGVPFGINF 494 (525)
Q Consensus 431 ~~~a~~~~r~~~~~~-~~~~~~~~~~DvLl~Pt~~---------------~t~~~n~~G~PaisvP~G~~~~GlPvGlQi 494 (525)
|.++.+.++++.+++ +.++|+++++|+||+||++ +|.+||++|+|+||||+|+. +|||+||||
T Consensus 385 ~~~a~~~~~~~~~~~~~~~~~~~~~~D~ll~Pt~~~a~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlPvGvql 463 (503)
T 1m22_A 385 YIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEGDDFPGESYSAAAVAGYPSLTVPMGQI-DGLPVGLLF 463 (503)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHTTCSEEEEECCCCCCBTTC---CCTTCCHHHHHHHTCCEEEEEEEEE-TTEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCEEEeCCCccCcccccccCcccccccccchhhCCCeEEeccccC-CCCCeEEEE
Confidence 555555555554453 9999986679999999873 56789999999999999987 899999999
Q ss_pred CCccCCCcceEeeeeccccceeccCCCCCCC
Q 036327 495 GGLRGTEPKLIEIAYGFEQATMIRKPPSFKP 525 (525)
Q Consensus 495 vg~~~~D~~LL~~A~~lE~~~~~~~~P~~~p 525 (525)
+|++|+|++||++|++||++++|+++|.+.|
T Consensus 464 vg~~~~d~~lL~~A~~~E~~~~~~~~p~~~~ 494 (503)
T 1m22_A 464 MGTAWSEPKLIEMAYAYEQRTRARRPPHFDT 494 (503)
T ss_dssp ECSTTCHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_pred ECCCCChHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 9999999999999999999999999998876
No 2
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=100.00 E-value=2e-104 Score=846.70 Aligned_cols=450 Identities=25% Similarity=0.373 Sum_probs=367.5
Q ss_pred eeeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhhhh
Q 036327 38 SIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVLLK 116 (525)
Q Consensus 38 ~~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vK 116 (525)
+++++|+.+|+++|++|++|++||+++||+||+++|+.+|||+++++| |+++|+++|+++. ++|+. ||||||||+||
T Consensus 2 ~l~~~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~~~-~~g~~-gpL~GvPi~vK 79 (485)
T 3ip4_A 2 SIRYESVENLLTLIKDKKIKPSDVVKDIYDAIEETDPTIKSFLALDKENAIKKAQELDELQA-KDQMD-GKLFGIPMGIK 79 (485)
T ss_dssp CGGGCCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHH-TTCCC-STTTTCEEEEE
T ss_pred CcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHHHHHHHHHH-hcCCC-CCcCCCEEEEE
Confidence 578899999999999999999999999999999999999999999998 9999999998752 46777 99999999999
Q ss_pred hhhcccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCCC
Q 036327 117 DMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCG 196 (525)
Q Consensus 117 D~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~GG 196 (525)
|||+++| ++||+||..+++++|.+||++|+|||+|||||+||||||||++ +..++|++||+|+||||++|+|||
T Consensus 80 D~~~v~G-~~tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~-----~~~t~n~~~G~t~NP~~~~~~pGG 153 (485)
T 3ip4_A 80 DNIITNG-LETTCASKMLEGFVPIYESTVMEKLHKENAVLIGKLNMDEFAM-----GGSTETSYFKKTVNPFDHKAVPGG 153 (485)
T ss_dssp TTBCBTT-BCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCSGGGC-----CSSSTTCSSCCCCBTTBTTBCCCS
T ss_pred cCcccCC-CccCCCChhhcCCCCCCCcHHHHHHHHCCCEEEEecCCccccc-----CCCCCCCCCCCcCCccccCcCCCC
Confidence 9999997 9999999999999999999999999999999999999999999 788999999999999999999999
Q ss_pred CCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccCCCc
Q 036327 197 SSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGS 276 (525)
Q Consensus 197 SSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~~v 276 (525)
||||||||||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++||||||| +|+++++ ++
T Consensus 154 SSgGsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv--~D~a~~l--~v 229 (485)
T 3ip4_A 154 SSGGSAAAVAAGLVPLSLGSDTGGSIRQPAAYCGVVGMKPTYGRVSRFGLVAFASSLDQIGPLTRNV--KDNAIVL--EA 229 (485)
T ss_dssp SSHHHHHHHHTTSCSEEEEECSSSTTHHHHHHTTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSH--HHHHHHH--HH
T ss_pred CccHHHHHhhcCCCceeeeccCCcchhhhHHHhCCeeecCCCCcccCCCCCCcccccceeccccCCH--HHHHHHH--HH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 9999999 99
Q ss_pred eeeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeeeece
Q 036327 277 SISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANI 356 (525)
Q Consensus 277 l~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~ 356 (525)
|+|+|+.|+.+... |..+|...+. .+++++||||+.+++.. .++++++++++++++.|+++||+|++ +++|.+
T Consensus 230 l~g~d~~d~~~~~~----~~~~~~~~~~-~~~~~lrigv~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~p~~ 302 (485)
T 3ip4_A 230 ISGADVNDSTSAPV----DDVDFTSEIG-KDIKGLKVALPKEYLGE-GVADDVKEAVQNAVETLKSLGAVVEE-VSLPNT 302 (485)
T ss_dssp HBSCCTTCTTSCCC----CCCCCSTTTT-CCCTTCEEEEEGGGGST-TSCHHHHHHHHHHHHHHHHTTCEEEE-ECCTTG
T ss_pred hcCCCccccccccc----Cccchhhhhc-cCccCcEEEEECCcccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-eCCCcH
Confidence 99999999766533 2223443332 35789999999886543 68999999999999999999999998 687765
Q ss_pred eeEeecccccchhhHHHHHHHHHHHHHHHHh---hchhhhHHHHHhhcccccchHHHHHhhhhhhhhh---h--hccCCC
Q 036327 357 DVILNATASGEATALVAEFKLALNAYVKELV---ASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAA---Q--ATNGIG 428 (525)
Q Consensus 357 ~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~ 428 (525)
+... ..+..++..|+..++.+|..... .....++.+++... ....+++...... . ......
T Consensus 303 ~~~~----~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~ 371 (485)
T 3ip4_A 303 KFGI----PSYYVIASSEASSNLSRFDGIRYGYHSKEAHSLEELYKMS-------RSEGFGKEVKRRIFLGTFALSSGYY 371 (485)
T ss_dssp GGHH----HHHHHHHHHHHHHHTTTCSSSSSSCCCTTCCSHHHHHHHH-------HHHHSCHHHHHHHHHHHHHHSTTTT
T ss_pred HHHH----HHHHHHHHHHHHHHHHhhhhhhccccccccccHHHHHHhh-------hhhhcCHHHHHHHHhccccccchhh
Confidence 4322 12344556676655433311000 00011122222110 1112222221111 0 011111
Q ss_pred chhHHHHhhhhhcchhhhhhhhhhccccccccCCCC---------------------ccceeeecCCCCcccCCCCCCCC
Q 036327 429 NTEKAALLNLAKLSRDGFEKAMTVNKLDALVTPRSD---------------------IAPVLAIGGFPGINVPAGYDTEG 487 (525)
Q Consensus 429 ~~~~~a~~~~r~~~~~~~~~~~~~~~~DvLl~Pt~~---------------------~t~~~n~~G~PaisvP~G~~~~G 487 (525)
..++...++.|..+++.+.++|+ ++|+||+||++ ||.+||++|+|++|||+|++ +|
T Consensus 372 ~~~~~~a~~~r~~~~~~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~G 448 (485)
T 3ip4_A 372 DAYYKKSQKVRTLIKNDFDKVFE--NYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS-NG 448 (485)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHT--TCSEEEEESSSSSCCBTTTSTTCHHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--cCCEEEeCCCCCCCCCcccccCChHHHhhhhhhhhhhHhhCCCeEEEeCCcC-CC
Confidence 22233344455555777999997 69999999974 45679999999999999997 89
Q ss_pred CcceeecCCccCCCcceEeeeeccccceeccCC
Q 036327 488 VPFGINFGGLRGTEPKLIEIAYGFEQATMIRKP 520 (525)
Q Consensus 488 lPvGlQivg~~~~D~~LL~~A~~lE~~~~~~~~ 520 (525)
||+||||+|++|+|++||++|++||++++|+.+
T Consensus 449 lPvGlqlvg~~~~d~~lL~~A~~lE~~~~~~~~ 481 (485)
T 3ip4_A 449 RPIGLQFIGKPFDEKTLYRVAYQYETQYNLHDV 481 (485)
T ss_dssp EEEEEEEECSTTCHHHHHHHHHHHHHHSCCTTT
T ss_pred CCEeEEEEcCCCCHHHHHHHHHHHHHhcCcccC
Confidence 999999999999999999999999999998643
No 3
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=100.00 E-value=9.7e-103 Score=830.23 Aligned_cols=447 Identities=25% Similarity=0.342 Sum_probs=367.5
Q ss_pred eeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhhhhh
Q 036327 39 IKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVLLKD 117 (525)
Q Consensus 39 ~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD 117 (525)
++++|+.+|+++|++|++|++||+++||+||+++|+.+|||+++++| |+++|+++|++ .||||||||+|||
T Consensus 2 l~~~sa~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~~d~~--------~gpL~GvPi~vKD 73 (478)
T 3h0l_A 2 LWKKSLSELRELLKRGEVSPKEVVESFYDRYNQTEEKVKAYITPLYGKALKQAESLKER--------ELPLFGIPIAVKD 73 (478)
T ss_dssp CTTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHTCCCT--------TSTTTTCEEEEET
T ss_pred CCcCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCcCcEEEEeChHHHHHHHHhhchh--------cCCcCCceEEEEc
Confidence 56789999999999999999999999999999999999999999998 99999998863 4899999999999
Q ss_pred hhcccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCCCC
Q 036327 118 MIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGS 197 (525)
Q Consensus 118 ~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~GGS 197 (525)
||+++| ++||+||..+.+++|.+||++|+|||+||||++||||||||++ +..++|++||+|+||||+.|+||||
T Consensus 74 ~~~~~G-~~tt~Gs~~~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~-----~~~~~n~~~G~t~NP~~~~~~~GGS 147 (478)
T 3h0l_A 74 NILVEG-EKTTCASKILENFVAPYDATVIERLKKAGALIVGKTNLDEFAM-----GSSTEYSAFFPTKNPWDLERVPGGS 147 (478)
T ss_dssp TBCCTT-SBCCTTCGGGTTCBCSSCCHHHHHHHHTTCEEEEEECCSGGGC-----CSSSTTCSSCCCCCTTCTTBCCCSS
T ss_pred CccCCC-CCcCCcCHhhcCCCCCCCHHHHHHHHHCCCEEEEEeCchhhhc-----CCCCCCCCCCCcCCCccCCCCCCcc
Confidence 999997 9999999999999999999999999999999999999999999 7889999999999999999999999
Q ss_pred CCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccCCCce
Q 036327 198 SSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGSS 277 (525)
Q Consensus 198 SgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~~vl 277 (525)
|||||++||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++||||||| +|+++++ ++|
T Consensus 148 SgGsaaaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv--~D~a~~l--~vl 223 (478)
T 3h0l_A 148 SGGSAASVAVLSAPVSLGSDTGGSIRQPASFCGVIGIKPTYGRVSRYGLVAFASSLDQIGVFGRRT--EDVALVL--EVI 223 (478)
T ss_dssp SHHHHHHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECCTTSBCCTTBCCSCTTTCCEEEEESSH--HHHHHHH--HHH
T ss_pred hHHHHHHHHCCCCceeeecCCCCcchhhhHHhCCeeEeCCCCcccCCCCCCCccCCCeecceeCCH--HHHHHHH--HHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999 999
Q ss_pred eeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeeeecee
Q 036327 278 ISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANID 357 (525)
Q Consensus 278 ~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~~ 357 (525)
+|+|+.|+.+... |..+|...+. ..++++||||+.+++.. .++|+++++++++++.|+++||+|++ +++|.++
T Consensus 224 ~g~d~~d~~~~~~----p~~~~~~~~~-~~~~~lrIgv~~~~~~~-~~~p~v~~a~~~a~~~L~~~G~~v~~-v~~p~~~ 296 (478)
T 3h0l_A 224 SGWDEKDSTSAKV----PVPEWSEEVK-KEVKGLKIGLPKEFFEY-ELQPQVKEAFENFIKELEKEGFEIKE-VSLPHVK 296 (478)
T ss_dssp BSCCTTCTTSCCC----CCCCHHHHTT-CCCTTCEEEEEGGGGGS-CCCHHHHHHHHHHHHHHHHTTCEEEE-ECCTTGG
T ss_pred cCCCccccccccc----Cccchhhhhc-cCCCCCEEEEECCcccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-eCCCcHH
Confidence 9999999766543 3335665543 46789999999876554 68999999999999999999999998 6877654
Q ss_pred eEeecccccchhhHHHHHHHHHHHHHHHHhhc---hhhhHHHHHhhcccccchHHHHHhhhhhhhhhh-----hccCCCc
Q 036327 358 VILNATASGEATALVAEFKLALNAYVKELVAS---PVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQ-----ATNGIGN 429 (525)
Q Consensus 358 ~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 429 (525)
.... .+..++.+|+..++.+|....... ...++.+++... ....++++...... .......
T Consensus 297 ~~~~----~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~ 365 (478)
T 3h0l_A 297 YSIP----TYYIIAPSEASSNLARYDGVRYGYRAKEYKDIFEMYART-------RDEGFGPEVKRRIMLGTFALSAGYYD 365 (478)
T ss_dssp GHHH----HHHHHHHHHHHHHTTTCSSSSSSCCCSCCSSHHHHHHHH-------HHHHSCHHHHHHHHHHHHHTSTTTTT
T ss_pred HHHH----HHHHHHHHHHHHHHHHhhhhhhcccccccccHHHHHHHh-------hhhhcCHHHHHHHHhhchhccchhhH
Confidence 3321 234556667666554332100000 011122222110 11122222211111 0111112
Q ss_pred hhHHHHhhhhhcchhhhhhhhhhccccccccCCCC---------------------ccceeeecCCCCcccCCCCCCCCC
Q 036327 430 TEKAALLNLAKLSRDGFEKAMTVNKLDALVTPRSD---------------------IAPVLAIGGFPGINVPAGYDTEGV 488 (525)
Q Consensus 430 ~~~~a~~~~r~~~~~~~~~~~~~~~~DvLl~Pt~~---------------------~t~~~n~~G~PaisvP~G~~~~Gl 488 (525)
.++...++.|..+++.+.++|+ ++|+||+||++ ||.+||++|+|++|||+|+ .+||
T Consensus 366 ~~~~~a~~~r~~~~~~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~Gl 442 (478)
T 3h0l_A 366 AYYLKAQKVRRLITNDFLKAFE--EVDVIASPTTPTLPFKFGERLENPIEMYLSDILTVPANLAGLPAISIPIAW-KDGL 442 (478)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTT--TCSEEEEESCSSSCCBTTTTSSSHHHHHGGGTTTHHHHHHTCCEEEEEEEE-ETTE
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--cCCEEEcCCCCCCCCCcccccCChHhhhhhhhhhhhhHhhCCCeEEEeCCC-CCCC
Confidence 2333334445555677999997 69999999975 4667999999999999999 7899
Q ss_pred cceeecCCccCCCcceEeeeeccccceeccCCCCCC
Q 036327 489 PFGINFGGLRGTEPKLIEIAYGFEQATMIRKPPSFK 524 (525)
Q Consensus 489 PvGlQivg~~~~D~~LL~~A~~lE~~~~~~~~P~~~ 524 (525)
|+||||+|++|+|++||++|++||++++|+..++|+
T Consensus 443 PvGlQlvg~~~~D~~LL~~A~~lE~~~~~~~~~p~~ 478 (478)
T 3h0l_A 443 PVGGQLIGKHWDETTLLQISYLWEQKFKHYEKIPLT 478 (478)
T ss_dssp EEEEEEEECTTCHHHHHHHHHHHHHHSCGGGCCSCC
T ss_pred CeEEEEECCCCCHHHHHHHHHHHHHhcCcccCCCCC
Confidence 999999999999999999999999999998777764
No 4
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=100.00 E-value=5.3e-101 Score=814.76 Aligned_cols=435 Identities=24% Similarity=0.353 Sum_probs=355.6
Q ss_pred cchhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhhhhhhhc
Q 036327 42 ATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIG 120 (525)
Q Consensus 42 ~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD~~~ 120 (525)
|++.+|+++|++|++|++||+++||+||+++|+.+|||++++ | |+++|+++|+++ |||||||+|||||+
T Consensus 1 ~~a~~l~~~~~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~-~~al~~A~~~d~~~---------pL~GvPi~vKD~~~ 70 (471)
T 3kfu_E 1 MLAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLN-ERLLEEAEAVDPGL---------PLAGLVVAVKDNIA 70 (471)
T ss_dssp -CHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEEC-CTTTHHHHTSCCSC---------TTTTCEEEEETTBC
T ss_pred CcHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCccEEEEeC-HHHHHHHHhcCccC---------CcCCCeEEEECCcc
Confidence 578999999999999999999999999999999999999999 8 999999988632 99999999999999
Q ss_pred ccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCCCCCCC
Q 036327 121 TKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSG 200 (525)
Q Consensus 121 ~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgG 200 (525)
++| ++||+||..+.++++.+||++|+|||++|||++||||||||++ +..++|++||+|+||||++|+|||||||
T Consensus 71 ~~G-~~tt~Gs~~~~~~~~~~da~~V~rL~~aGaii~GKTn~~E~~~-----~~~~~n~~~G~t~NP~~~~~~~GGSSgG 144 (471)
T 3kfu_E 71 TRG-LRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGM-----GSSTEHSAFFPTKNPFDPDRVPGGSSGG 144 (471)
T ss_dssp CTT-SCCCTTCSTTTTCCCSSCCHHHHHHHTTTCEEEEEECCSGGGC-----CSSSTTCSSCCCCBTTBTTBCCCSSSHH
T ss_pred cCC-ccccccCHhHcCCCCCCChHHHHHHHHCCCEEEeecCcCchhc-----CCCCCCCCCCCcCCCCccCcCCCCCcHH
Confidence 997 9999999999999999999999999999999999999999999 7889999999999999999999999999
Q ss_pred CceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccCCCceeee
Q 036327 201 PAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGSSISV 280 (525)
Q Consensus 201 saaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~~vl~g~ 280 (525)
||++||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++||||||| +|+++++ ++|.|+
T Consensus 145 saaaVAag~~~~a~GtDtgGSiR~PAa~cGv~GlKPT~G~v~~~g~~~~~~~~d~~Gp~arsv--~D~a~~~--~~l~g~ 220 (471)
T 3kfu_E 145 SAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSV--RDLALLM--DAAAGP 220 (471)
T ss_dssp HHHHHHTTSCSEEEEEESSSTTHHHHHHTTCEEEECCTTSSCCTTBCCSCTTTCEEEEEESSH--HHHHHHH--HHHCSC
T ss_pred HHHHHHCCCCccccccCCCCccccChhhcCceeeeCCCCCccCCCCCCcccccCeecceeCCH--HHHHHHH--HHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999 999999
Q ss_pred ecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeeeeceeeEe
Q 036327 281 DYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANIDVIL 360 (525)
Q Consensus 281 d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~~~~~ 360 (525)
|+.|+.+... | .+|...+. ..++++||||+.+++ . .++|+++++++++++.|+++||+|++ +++|+++...
T Consensus 221 d~~d~~~~~~----~-~~~~~~~~-~~~~~lrIgv~~~~~-~-~~~p~v~~a~~~a~~~L~~~G~~v~~-v~~p~~~~~~ 291 (471)
T 3kfu_E 221 DPLDATSLDL----P-PRFQEALE-GPLPPLRLGVVREAL-A-GNSPGVERALEEALKVFRELGLSVRE-VSWPSLPQAL 291 (471)
T ss_dssp CTTCTTCCCC----C-CCTTCCSC-CCCSSCEEEEEGGGT-T-TCCHHHHHHHHHHHHHHHTTTCEEEE-ECCTTGGGHH
T ss_pred CcccccccCC----C-cchhhhhc-cCCCCCEEEEECCcc-C-CCCHHHHHHHHHHHHHHHHcCCeeee-ecCccHHHHH
Confidence 9999765543 2 23432222 256889999998865 3 68999999999999999999999998 6877654432
Q ss_pred ecccccchhhHHHHHHHHHHHHHHHHhhch--hhhHHHHHhhcccccchHHHHHhhhhhhhhhhh-----ccCCCchhHH
Q 036327 361 NATASGEATALVAEFKLALNAYVKELVASP--VRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQA-----TNGIGNTEKA 433 (525)
Q Consensus 361 ~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 433 (525)
. .+..++.+|+..++.+|........ ...+.+++...+. .+++........ .......++.
T Consensus 292 ~----~~~~~~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~ 359 (471)
T 3kfu_E 292 A----AYYILAPAEASSNLARYDGTLYGRRAAGEEVEGMMEATRA--------LFGLEVKRRVLVGTFVLSSGYYEAYYG 359 (471)
T ss_dssp H----HHHHHHHHHHHHHGGGCSTTTTSCCCCCSSSHHHHHHHHT--------TSCHHHHHHHHHHHHHHSTTTTTTTHH
T ss_pred H----HHHHHHHHHHHHHHHHhhhhccccccchhhHHHHHHhhhh--------hcCHHHHHHHHhcccccccccCHHHHH
Confidence 2 2345566777665544322110000 0112222211100 022221111000 1111222333
Q ss_pred HHhhhhhcchhhhhhhhhhccccccccCCCC--------------------ccceeeecCCCCcccCCCCCCCCCcceee
Q 036327 434 ALLNLAKLSRDGFEKAMTVNKLDALVTPRSD--------------------IAPVLAIGGFPGINVPAGYDTEGVPFGIN 493 (525)
Q Consensus 434 a~~~~r~~~~~~~~~~~~~~~~DvLl~Pt~~--------------------~t~~~n~~G~PaisvP~G~~~~GlPvGlQ 493 (525)
..++.|..+++.+.++|+ ++|+||+||++ ||.+||++|+|++|||+|+ .+|||+|||
T Consensus 360 ~a~~~r~~~~~~~~~~~~--~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGlQ 436 (471)
T 3kfu_E 360 RAQAFRRRLKAEAQALFR--EVDLLLLPTTPHPAFPFGARRDPLAMYREDLYTVGANLTGLPALSFPAGF-EGHLPVGLQ 436 (471)
T ss_dssp HHHHHHHHHHHHHHHHTT--TCSEEEEESCSSSCCBTTTTCSHHHHHGGGTTTHHHHHHCCCEEEEEEEE-ETTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHh--cCCEEEeCCcCCCCCccccccchHHHHHHhhhhhcchhhCCCeEEEeCCC-CCCCCeEEE
Confidence 334445555677999997 69999999986 4568999999999999999 899999999
Q ss_pred cCCccCCCcceEeeeeccccce-eccCC
Q 036327 494 FGGLRGTEPKLIEIAYGFEQAT-MIRKP 520 (525)
Q Consensus 494 ivg~~~~D~~LL~~A~~lE~~~-~~~~~ 520 (525)
|+|++|+|++||++|++||++. +|+..
T Consensus 437 lvg~~~~D~~LL~~A~~lE~~~g~w~~~ 464 (471)
T 3kfu_E 437 LLAPWGEDERLLRAALAFEEATARAHLK 464 (471)
T ss_dssp EECSTTCHHHHHHHHHHHHHHSSCCCCC
T ss_pred EECCCCCHHHHHHHHHHHHHHhcCcccC
Confidence 9999999999999999999999 88643
No 5
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=100.00 E-value=4.6e-100 Score=801.77 Aligned_cols=405 Identities=24% Similarity=0.290 Sum_probs=344.2
Q ss_pred cchhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhhhhhhhc
Q 036327 42 ATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIG 120 (525)
Q Consensus 42 ~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD~~~ 120 (525)
+|+.+|+++|++|++|++||+++||+||+++|+ +|||+++++| |+++|+++|+++ ++|+.+||||||||+|||||+
T Consensus 1 ~~~~~l~~~~~~g~~s~~el~~a~l~ri~~~~~-lna~~~~~~~~Al~~A~~~d~~~--~~g~~~gpL~GvPi~vKD~~~ 77 (434)
T 2dc0_A 1 MDLLEAKRLLETGRTTPLALLEEALERAKAFQD-RNALAYLDEEAARKEALALTEEL--RRGQVRGPLHGLPLTVKDLFP 77 (434)
T ss_dssp CCHHHHHHHHHTTSCCHHHHHHHHHHHHHHTGG-GCCEEEECHHHHHHHHHHHHHHH--HTTCCCSTTTTCEEEEETTSC
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-CcEEEEcCHHHHHHHHHHHHHHH--hcCCCCCCcCCeeEEEEeccc
Confidence 478999999999999999999999999999999 9999999998 999999999998 778889999999999999999
Q ss_pred ccccCCCCcccceeecccc-ccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCCCCCC
Q 036327 121 TKDKQNTTAGSFALLGSVV-ARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSS 199 (525)
Q Consensus 121 ~~gg~~tt~Gs~~~~~~~~-~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~GGSSg 199 (525)
++| ++||+||..+ ++| .+||++|+|||+||||++||||||||++ +..++|++||+|+||||+.|+||||||
T Consensus 78 v~G-~~tt~Gs~~~--~~~a~~dA~vV~rL~~aGAii~GKTn~~Efa~-----~~~~~n~~~G~t~NP~~~~~~pGGSSg 149 (434)
T 2dc0_A 78 VKG-MPTRAGTKAP--LPPLPEEARAVRRLREAGALLFAKTNMHEIAL-----GITGENPWTGPVRNAVDPSRQAGGSSG 149 (434)
T ss_dssp BTT-BCCCTTCSSC--CCCCCSSCHHHHHHHHTTCEEEEEECCSGGGC-----CSSCCCTTTCCCBCSSCTTBBCCSSSH
T ss_pred cCC-cccCCCCccc--CCCCCCCHHHHHHHHHCCCEEEEEeChhHHhc-----CCCCCCCCCCCCCCCCCCCCCCcccHH
Confidence 997 9999999999 777 8999999999999999999999999999 788999999999999999999999999
Q ss_pred CCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccCCCceee
Q 036327 200 GPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGSSIS 279 (525)
Q Consensus 200 GsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~~vl~g 279 (525)
||||+||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++||||||| +|+++++ ++|.|
T Consensus 150 GsAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~g~~~~~~s~d~~Gp~arsv--~D~a~~l--~~l~g 225 (434)
T 2dc0_A 150 GSAVAVALGIGLASLGTDTGGSIRIPAGFNGVVGFKPSYGRVSLEGALPLSRSTDHAGPLTRSV--RDAHFLT--EILAG 225 (434)
T ss_dssp HHHHHHHHTSSSCEEEECSSSTTHHHHHHHTCEEEECSTTSSCCTTSCCSCTTTCCEEEEESSH--HHHHHHH--HHHHT
T ss_pred HHHHHHHcCCCceeeecCCChhhhhhHHhCCCEEEECCCCCCCCCCCCCCCCccCeeCcccCCH--HHHHHHH--HHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 9999999 99999
Q ss_pred eecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeeeeceeeE
Q 036327 280 VDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANIDVI 359 (525)
Q Consensus 280 ~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~~~~ 359 (525)
+ +.|+. .++++||||+.++++. +++|+++++++++++.|+++||+|++ +++| ++..
T Consensus 226 ~-~~d~~--------------------~~~~lrig~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~p-~~~~ 281 (434)
T 2dc0_A 226 E-SIPLE--------------------GVQNPVFGVPLDFLEG-RLGVEVRKAFTRLLEDLPALRAEVRE-VSLP-LEGV 281 (434)
T ss_dssp S-CCCCC--------------------CCCSCEEEECHHHHTT-CSCHHHHHHHHHHHHHTTTTTCEEEE-CCCC-CTTH
T ss_pred C-CCCcc--------------------cccCCEEEEECccccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-eCCC-cHHH
Confidence 7 65521 2477999999876554 68999999999999999999999988 6776 5432
Q ss_pred eecccccchhhHHHHHHHHHHHHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCCCchhHHHHhhhh
Q 036327 360 LNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAALLNLA 439 (525)
Q Consensus 360 ~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r 439 (525)
.. .+..++..|+...+.+++.... ..+++...........++..++....+.|
T Consensus 282 ~~----~~~~~~~~e~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~g~~~~~~~~~~a~~~r 334 (434)
T 2dc0_A 282 YE----VYTRLVRYEAARIHEKALKEHP-----------------------EGFSPQVREALLAGLALTEKDYRDAVAER 334 (434)
T ss_dssp HH----HHHHHHHHHHHHHSHHHHHHCG-----------------------GGSCHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHHHHHHHHHhch-----------------------hhcCHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 21 2334556666655444332110 01112111111122222333333334445
Q ss_pred hcchhhhhhhhhhccccccccCCCC--------------------------ccceeeecCCCCcccCCCCCCCCCcceee
Q 036327 440 KLSRDGFEKAMTVNKLDALVTPRSD--------------------------IAPVLAIGGFPGINVPAGYDTEGVPFGIN 493 (525)
Q Consensus 440 ~~~~~~~~~~~~~~~~DvLl~Pt~~--------------------------~t~~~n~~G~PaisvP~G~~~~GlPvGlQ 493 (525)
+.+++.+.++|+ ++|+||+|+++ ||.+||++|+|++|||+|+ .+|||+|||
T Consensus 335 ~~~~~~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~GlPvGvq 411 (434)
T 2dc0_A 335 EALRLELVKALR--GVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLGVPTLALPFAK-VEGMPVGLQ 411 (434)
T ss_dssp HHHHHHHHHHHT--TSSEEEEESCSSSCCBTTCCEEEETTEEEEHHHHHHTTTHHHHHTTCCEEEEEEEE-ETTEEEEEE
T ss_pred HHHHHHHHHHHh--cCCEEEECCCCCCCccCcccccccccchhhhhhhhhhhhhhhhhhCCCeEEEecCC-CCCCCeEEE
Confidence 555777999997 59999999974 2346899999999999999 799999999
Q ss_pred cCCccCCCcceEeeeeccccce
Q 036327 494 FGGLRGTEPKLIEIAYGFEQAT 515 (525)
Q Consensus 494 ivg~~~~D~~LL~~A~~lE~~~ 515 (525)
|+|++|+|++||++|++||+++
T Consensus 412 lvg~~~~d~~lL~~A~~lE~~~ 433 (434)
T 2dc0_A 412 VVGAYGEDGKVLALGGWLEARL 433 (434)
T ss_dssp EECCTTCHHHHHHHHHHHHTTC
T ss_pred EECCCCchHHHHHHHHHHHHhh
Confidence 9999999999999999999875
No 6
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=100.00 E-value=1.9e-99 Score=810.55 Aligned_cols=431 Identities=20% Similarity=0.250 Sum_probs=353.3
Q ss_pred eeeeeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhh
Q 036327 36 AFSIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVL 114 (525)
Q Consensus 36 ~~~~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~ 114 (525)
..++.+ |+.+|+++|++|++|++||+++||+||+++|+.+|||+++++| |+++|++ | .||||||||+
T Consensus 3 ~~~~~~-~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~Al~~A~~-d----------~gpL~GvPi~ 70 (493)
T 3a2q_A 3 KVDLWQ-DATAQAELVRSGEISRTELLEATIAHVQAVNPEINAVIIPLFEKARRESEL-A----------SGPFAGVPYL 70 (493)
T ss_dssp -CCTTS-CHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHH-C----------CSTTTTCEEE
T ss_pred hhhhhh-hHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCeEEecCHHHHHHHhhh-c----------CCCcCCcEEE
Confidence 445777 9999999999999999999999999999999999999999998 9999887 6 2799999999
Q ss_pred hhhhh-cccccCCCCcccceee--ccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeee
Q 036327 115 LKDMI-GTKDKQNTTAGSFALL--GSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLS 191 (525)
Q Consensus 115 vKD~~-~~~gg~~tt~Gs~~~~--~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~ 191 (525)
||||| +++| ++||+||..+. ++++.+||++|+|||+|||||+||||||||++ +..++|++||+|+||||+.
T Consensus 71 vKD~~~~v~G-~~Tt~Gs~~~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~-----~~~~~n~~~G~t~NP~~~~ 144 (493)
T 3a2q_A 71 LKDLTVVSQG-DINTSSIKGMKESGYRADHDAYFVQRMRAAGFVLLGKTNTPEMGN-----QVTTEPEAWGATRNPWNLG 144 (493)
T ss_dssp EESSSSCCTT-SBCCTTCHHHHHHTCBCSSCCHHHHHHHHHTCEEEEEECCSGGGC-----SSSCCCTTTCCCCBTTBTT
T ss_pred EecCCcCcCC-CcccccChhhhhcCCCCCCCHHHHHHHHHCCCceEEEcChhhhhc-----CCCCCCCCCCCCCCCCCCC
Confidence 99999 9997 99999999999 99999999999999999999999999999999 7889999999999999999
Q ss_pred cCCCCCCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccc--e-ecCCCCccccceeeeeeeccc
Q 036327 192 ADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGV--I-PVSPRQDTIGDICLSLFISDA 268 (525)
Q Consensus 192 ~~~GGSSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~--~-~~~~~~d~~GpmaRsV~~~D~ 268 (525)
|+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|+ . +.++++|++||||||| +|+
T Consensus 145 ~~pGGSSgGsAAAVAaG~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~g~~~~~~~~~sld~~Gp~arsv--~D~ 222 (493)
T 3a2q_A 145 RSVGGSSGGSGAAVAAALSPVAHGNDAAGAVRIPASVCGVVGLKPTRGRISPGPLVTDSDNVAGAAHEGLFARSV--RDI 222 (493)
T ss_dssp BCCCSSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTSEEEECSTTSBCCCSSCCHHHHHHTTCEEEEEESSH--HHH
T ss_pred CCCCcCcHHHHHHHHcCCCceeeecCCCcccccchhhcCcceEEcCCCccCCCCCcccccccccCceecCccCCH--HHH
Confidence 9999999999999999999999999999999999999999999999999999998 5 8888999999999999 999
Q ss_pred eeccCCCceeeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCcc-ccCCcchhHHHHHHHHHHHhhcccee
Q 036327 269 KVSSSNGSSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFF-NFDKGSALTQAFNYHLQTLRQQGAVL 347 (525)
Q Consensus 269 a~~l~~~vl~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~-~~~~~~~v~~a~~~a~~~L~~~G~~V 347 (525)
++++ ++|.|+|+.|+.+... |..+|...+. ...+++||||+.++++ ..+++++++++++++++.|+++||+|
T Consensus 223 a~~l--~~l~g~d~~d~~~~~~----p~~~~~~~~~-~~~~~lrIgv~~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~v 295 (493)
T 3a2q_A 223 AALL--DVVSGHRPGDTFCAPT----ASRPYAQGIS-ENPGSLRVGVLTHNPVGDFALDPECAAAARGAAAALAALGHDV 295 (493)
T ss_dssp HHHH--HHHBSCCTTCSCCCCC----CSSCHHHHTT-SCCCSCEEEECCSCTTCSSCCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHH--HHHcCCCCCCcccccC----CCcchhhhcc-cCCCCCEEEEECCccccCCCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 9999 9999999998665432 3334655433 3468899999988752 23689999999999999999999999
Q ss_pred eeeeeeecee--eEeecccccchhhHHHHHHHHHHHHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhcc
Q 036327 348 VDYLEIANID--VILNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATN 425 (525)
Q Consensus 348 ve~~~~p~~~--~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (525)
++ +++|.++ ... ..+..++..|+...+..+..... .+ .+. + .+.+..........
T Consensus 296 ~~-~~~~~~~~~~~~----~~~~~~~~~e~~~~~~~~~~~~~-~~------------~~~--~---~~~~~~~~~~~~g~ 352 (493)
T 3a2q_A 296 ND-AYPEALGDRSFL----KDYSTICDVAIAREIERNGELIG-RP------------LTE--D---DVEWTSWEMVKRAD 352 (493)
T ss_dssp EE-CCCGGGGCCTHH----HHHHHHHHHHHHHHHHHHHHHHT-SC------------CCT--T---TSCHHHHHHHHHHH
T ss_pred EE-eCCCccCHHHHH----HHHHHHHHHHHHHHHHHHHHHhc-Cc------------cCh--h---hcCHHHHHHHHhhc
Confidence 98 6766333 111 12234455666554332221110 00 000 0 11111111112222
Q ss_pred CCCchhHHHHhhhhhcchhhhhhhh-hhccccccccCCCC---------------------------------ccceeee
Q 036327 426 GIGNTEKAALLNLAKLSRDGFEKAM-TVNKLDALVTPRSD---------------------------------IAPVLAI 471 (525)
Q Consensus 426 ~~~~~~~~a~~~~r~~~~~~~~~~~-~~~~~DvLl~Pt~~---------------------------------~t~~~n~ 471 (525)
.++..++....+.|..+++.+.++| + ++|+||+||++ ||.+||+
T Consensus 353 ~~~~~~~~~a~~~r~~~~~~~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl 430 (493)
T 3a2q_A 353 QVTGRAFAACVDELRYYAGKVERWWEA--GWDLLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNV 430 (493)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHT--TCCEEEEESCSSCCCBTTTTCCCTTCCCCSSCGGGSHHHHHHHTTTTHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEcCCCCCCCCCCcccccccccccccccchhhhhhhhhhcccccccc
Confidence 3343334333444555567799999 6 69999999853 3456899
Q ss_pred cCCCCcccCCCCCCCCCcceeecCCccCCCcceEeeeeccccceecc
Q 036327 472 GGFPGINVPAGYDTEGVPFGINFGGLRGTEPKLIEIAYGFEQATMIR 518 (525)
Q Consensus 472 ~G~PaisvP~G~~~~GlPvGlQivg~~~~D~~LL~~A~~lE~~~~~~ 518 (525)
+|+|++|||+|++.+|||+||||+|++|+|++||++|++||++++|+
T Consensus 431 ~G~PaisvP~g~~~~GlPvGvQlvg~~~~d~~lL~~A~~lE~~~~~~ 477 (493)
T 3a2q_A 431 SGQPAISLPIGMSSDGMPIGVQIVAAYGREDLLLQVAAQLEGALPWV 477 (493)
T ss_dssp HCCCEEEEEEEECTTSCEEEEEEEESTTCHHHHHHHHHHHHHHSCCT
T ss_pred cCCCceeccCCcCCCCCCeEEEEecCCCChHHHHHHHHHHHHhcCcc
Confidence 99999999999988999999999999999999999999999999884
No 7
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=100.00 E-value=8e-99 Score=802.37 Aligned_cols=437 Identities=26% Similarity=0.366 Sum_probs=345.3
Q ss_pred eeeeeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhh
Q 036327 36 AFSIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVL 114 (525)
Q Consensus 36 ~~~~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~ 114 (525)
.+++.++|+.+| |++|++|++||+++||+||+++|+.+|||+++++| |+ | + + ||||||||+
T Consensus 4 ~~~~~~~s~~~l---i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~al------d-----~--~--gpL~GvPi~ 65 (476)
T 2gi3_A 4 DLDFRKLTIEEC---LKLSEEEREKLPQLSLETIKRLDPHVKAFISVRENVSV------E-----K--K--GKFWGIPVA 65 (476)
T ss_dssp CSCGGGCCHHHH---TTSCHHHHTTHHHHHHHHHHHHHHHHCCEEEECCCCCC------C-----C--C--STTTTCEEE
T ss_pred ccccccCCHHHH---HHcCCCCHHHHHHHHHHHHHHhCCceeEEEecChhhhh------h-----c--c--CCcCCceEE
Confidence 467788899998 99999999999999999999999999999999988 66 2 1 1 799999999
Q ss_pred hhhhhcccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCC
Q 036327 115 LKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADP 194 (525)
Q Consensus 115 vKD~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~ 194 (525)
|||||+++| ++||+||..+++++|.+||++|+|||+|||||+||||||||++ +..++|++||+|+||||+.|+|
T Consensus 66 vKD~~~v~G-~~Tt~Gs~~~~~~~~~~dA~vV~rLr~AGAii~GKTn~~Efa~-----~~~~~n~~~G~t~NP~~~~~~p 139 (476)
T 2gi3_A 66 IKDNILTLG-MRTTCASRILENYESVFDATVVKKMKEAGFVVVGKANLDEFAM-----GSSTERSAFFPTRNPWDLERVP 139 (476)
T ss_dssp EETTBCCSS-SCCCTTCGGGTTCCCCSCCHHHHHHHHHTCEEEEEECCSGGGC-----CSSSTTCSSCCCCBTTBTTBCC
T ss_pred EEcCccCCC-CccCccChhhcCCCCCCChHHHHHHHHCCCEEEEecCchhhhc-----CCCCCCCCCCCCCCCCCCCCCC
Confidence 999999997 9999999999999999999999999999999999999999999 7889999999999999999999
Q ss_pred CCCCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccCC
Q 036327 195 CGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSN 274 (525)
Q Consensus 195 GGSSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~ 274 (525)
||||||||||||+|++|+|+|||||||||+||+||||||||||+||||+.|++|+++++|++||||||| +|+++++
T Consensus 140 GGSSgGsAaAVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~p~~~sld~~Gp~arsv--~D~a~~l-- 215 (476)
T 2gi3_A 140 GGSSGGSAAAVSAGMVVAALGSDTGGSVRQPASLCGVVGYKPTYGLVSRYGLVAFASSLDQIGPITKTV--RDAAILM-- 215 (476)
T ss_dssp CSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECCTTSBCCTTBCCSCTTTCEEEEEESSH--HHHHHHH--
T ss_pred CcchHHHHHHHHcCCCceEeecCCCchhhhhHHHcCCeEEeCCCCcCCCCCCCCcccCCCeeeeeeCCH--HHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CceeeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeeee
Q 036327 275 GSSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIA 354 (525)
Q Consensus 275 ~vl~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p 354 (525)
++|+|+|+.|+.+... |. +|...+. ..++++||||+.+++.. .++++++++++++++.|+++||+|++ +++|
T Consensus 216 ~~l~g~d~~d~~~~~~----p~-~~~~~~~-~~~~~lrig~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~p 287 (476)
T 2gi3_A 216 EIISGRDENDATTVNR----KV-DFLSEIE-EGVSGMKFAVPEEIYEH-DIEEGVSERFEEALKLLERLGAKVER-VKIP 287 (476)
T ss_dssp HHHBSCBTTBTTCCSC----CC-CSSTTTT-SCCTTCEEEEEGGGGGS-CCCHHHHHHHHHHHHHHHHTTCEEEE-ECCT
T ss_pred HHhhCCCCCCccccCC----Cc-chhhhhh-cCCCCCEEEEECccccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-eCCC
Confidence 9999999988665432 22 3433222 35688999999876533 68999999999999999999999998 6777
Q ss_pred ceeeEeecccccchhhHHHHHHHHHHHHHHHHhhchh--hhHHHHHhhcccccchHHHHHhhhhhhhhhhhcc-----CC
Q 036327 355 NIDVILNATASGEATALVAEFKLALNAYVKELVASPV--RSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATN-----GI 427 (525)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 427 (525)
.++... ..+..++.+|+...+..|......... +++.+++..... + .+++.......... ..
T Consensus 288 ~~~~~~----~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~g~~~~~~~~ 356 (476)
T 2gi3_A 288 HIKYSV----ATYYVIAPAEASSNLARFDGVKYGLRIKEKGLREMYMKTRN----V---GFGEEVRRRIMIGTFTLSAAY 356 (476)
T ss_dssp TGGGHH----HHHHHHHHHHHHTC------------------------CCS----C---CHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHH----HHHHHHHHHHHHHHHHHhhccccccccccccHHHHHHhhhh----h---hcCHHHHHHHHhccccccchh
Confidence 543321 122345556666555444321111000 112222211100 0 01111111111100 00
Q ss_pred CchhHHHHhhhhhcchhhhhhhhhhccccccccCCCC--------------------ccceeeecCCCCcccCCCCCCCC
Q 036327 428 GNTEKAALLNLAKLSRDGFEKAMTVNKLDALVTPRSD--------------------IAPVLAIGGFPGINVPAGYDTEG 487 (525)
Q Consensus 428 ~~~~~~a~~~~r~~~~~~~~~~~~~~~~DvLl~Pt~~--------------------~t~~~n~~G~PaisvP~G~~~~G 487 (525)
...++...++.|..+++.++++|+ ++|+||+||++ ||.+||++|+|++|||+|+. +|
T Consensus 357 ~~~~~~~a~~~r~~~~~~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~G 433 (476)
T 2gi3_A 357 YEAYFNKAMKVRRKISDELNEVLS--QYDAILTPTSPVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGFS-NN 433 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HSSEEEEESCSSCCCBTTTCCCHHHHHTTTTTTHHHHHHTCCEEEEEEEEE-TT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh--cCCEEEeCCCCCCCCcccccccchhhhhccceeccccccCCceEEEecccC-CC
Confidence 111333334445555777999997 59999999975 35679999999999999986 89
Q ss_pred CcceeecCCccCCCcceEeeeeccccceeccCCCC
Q 036327 488 VPFGINFGGLRGTEPKLIEIAYGFEQATMIRKPPS 522 (525)
Q Consensus 488 lPvGlQivg~~~~D~~LL~~A~~lE~~~~~~~~P~ 522 (525)
||+||||+|++|+|++||++|++||++++|++.+.
T Consensus 434 lPvGvqlvg~~~~d~~lL~~A~~lE~~~~~~~~~~ 468 (476)
T 2gi3_A 434 LPVGVQVIGRRFADGKVFRIARAIEKNSPYNENGM 468 (476)
T ss_dssp EEEEEEEECCTTCHHHHHHHHHHHHHHCTTSBTTB
T ss_pred CCeEEEEEcCCCCHHHHHHHHHHHHHhcCcccccC
Confidence 99999999999999999999999999999876643
No 8
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=100.00 E-value=1.8e-96 Score=792.18 Aligned_cols=444 Identities=20% Similarity=0.210 Sum_probs=350.1
Q ss_pred eeeeeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcchhccccchhhhhcccCCCceecccCchhhh
Q 036327 36 AFSIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPDALYQADKADYERKVKAPGSLVGLRGIPVLL 115 (525)
Q Consensus 36 ~~~~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~al~~A~~~d~~~~~~~g~~~gpL~GvPi~v 115 (525)
.-+|+++|+.+|+++|++|++|++||+++|++||++.|+.+||++++.+|++++|+++++ .||||||||+|
T Consensus 65 ~~~i~~~~~~~l~~~l~~g~~s~~ev~~a~l~ri~~~~~~~na~~~~~~~a~~~a~~~~~---------~gpL~GvPi~v 135 (573)
T 3ppm_A 65 SEALLTLPLLQLVQKLQSGELSPEAVFFTYLGKAWEVNKGTNCVTSYLTDCETQLSQAPR---------QGLLYGVPVSL 135 (573)
T ss_dssp HHHHHHSCHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTHHHHHHHCCT---------TCTTTTCEEEE
T ss_pred hhhhhhCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCccCEEEEECHHHHHHHHhhhh---------cCCcCCCeEEE
Confidence 345888999999999999999999999999999999999999999999886655544331 28999999999
Q ss_pred hhhhcccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCC
Q 036327 116 KDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPC 195 (525)
Q Consensus 116 KD~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~G 195 (525)
||||+++| ++||+||..+.++++.+||++|++||+||||++||||||||++ +..+.|++||+|+||||++++||
T Consensus 136 KD~~~~~G-~~tt~Gs~~~~~~~~~~da~vV~~L~~aGAv~~gKTn~pe~~~-----~~~~~n~~~G~t~NP~~~~~~~G 209 (573)
T 3ppm_A 136 KECFSYKG-HDSTLGLSLNEGMPSESDCVVVQVLKLQGAVPFVHTNVPQSMF-----SYDCSNPLFGQTMNPWKSSKSPG 209 (573)
T ss_dssp ETTBCCBT-CCCCTTCGGGTTCCBSSCCHHHHHHHHTTCEEEEEECCCTTSC-----SSSCEETTTEECCCTTCTTBCCC
T ss_pred EcccCCCC-CCcCCcChhhcCCCCCcchHHHHHHHHCCCEEEEecCCccccc-----cCCCCCCCCCCcCCCCCCCCCCC
Confidence 99999997 9999999999999999999999999999999999999999998 77889999999999999999999
Q ss_pred CCCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCC----Cccccceeeeeeeccceec
Q 036327 196 GSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPR----QDTIGDICLSLFISDAKVS 271 (525)
Q Consensus 196 GSSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~----~d~~GpmaRsV~~~D~a~~ 271 (525)
||||||||+||+|++++|+|||||||||+||+||||||||||+||||+.|++|.+++ +|++||||||| +|++++
T Consensus 210 GSSgGsaaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~Grvs~~G~~~~~~~~~~~~~~~Gp~arsv--~D~a~~ 287 (573)
T 3ppm_A 210 GSSGGEGALIGSGGSPLGLGTDIGGSIRFPSAFCGICGLKPTGNRLSKSGLKGCVYGQTAVQLSLGPMARDV--ESLALC 287 (573)
T ss_dssp SSSHHHHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECCGGGSCCTTBCCSCCSCCSSCCEEEEEESSH--HHHHHH
T ss_pred CCCchHHHHHHcCCCcEEEecCCCcchhhhhHHhCeeEEeCCCCcccCCCCCCcccccCcccccccceeCcH--HHHHHH
Confidence 999999999999999999999999999999999999999999999999999998876 78999999999 999999
Q ss_pred cCCCceeeeecC--CcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeee
Q 036327 272 SSNGSSISVDYN--DPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVD 349 (525)
Q Consensus 272 l~~~vl~g~d~~--d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve 349 (525)
+ ++|.+.|++ |+...+. | |...+. ...+++||||+.++++. .++|+++++++++++.|+++||+|++
T Consensus 288 l--~~l~~~d~~~~d~~~~~~----~---~~~~~~-~~~~~lrigv~~~~~~~-~~~p~v~~a~~~a~~~L~~~G~~v~~ 356 (573)
T 3ppm_A 288 L--KALLCEHLFTLDPTVPPL----P---FREEVY-RSSRPLRVGYYETDNYT-MPSPAMRRALIETKQRLEAAGHTLIP 356 (573)
T ss_dssp H--HHHSSHHHHHHCTTSCCC----C---CCHHHH-TCCCCCEEEECSCCSSS-CCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred H--HHHhcccccccCCCCCcc----c---cchhhc-ccCCCCEEEEEcccCCC-CCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 9 999998853 4332211 2 433332 45789999999877664 57999999999999999999999998
Q ss_pred eeeeeceeeEeecccccchhhHHHHHHHHHHHHHHHHhhchh--------------hhHHHHHhhcccccchHHHHHhhh
Q 036327 350 YLEIANIDVILNATASGEATALVAEFKLALNAYVKELVASPV--------------RSLAEVIAFNEKFSDIEKIEEFGQ 415 (525)
Q Consensus 350 ~~~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 415 (525)
+++|.+.+....+ +...+..+.... ++..+..+++ ++++.++.+.... +.+
T Consensus 357 -~~~p~~~~~~~~~---~~~~~~~dg~~~---~~~~~~~e~~~p~~~~~~~~~~lp~~l~~~~~~~~~~--------~~p 421 (573)
T 3ppm_A 357 -FLPNNIPYALEVL---STGGLFSDGGRS---FLQNFKGDFVDPCLGDLILILRLPSWFKRLLSLLLKP--------LFP 421 (573)
T ss_dssp -CCCTTHHHHHHTH---HHHHHTTBTTHH---HHGGGTTSCCCGGGTTHHHHHTSCHHHHHHHHHHHTT--------TCH
T ss_pred -ecCccHHHHHHHH---HHHHHhhhhHHH---HHHHhccCcccHHHHHHhhhccchHHHHHHHHHHhhh--------cch
Confidence 6877654322100 001111111111 1111111110 1222332221110 001
Q ss_pred hhhhhhhhccCCCchhHHHHhhhhhcchhhhhhhhhhccccccccCCCC----------------ccceeeecCCCCccc
Q 036327 416 DIFLAAQATNGIGNTEKAALLNLAKLSRDGFEKAMTVNKLDALVTPRSD----------------IAPVLAIGGFPGINV 479 (525)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~a~~~~r~~~~~~~~~~~~~~~~DvLl~Pt~~----------------~t~~~n~~G~Paisv 479 (525)
............+..+++.+...++.+++++.+.|+++++|+||+|+.+ ||.+||++|+|+++|
T Consensus 422 ~~~~~~~~~~~~s~~e~~~~~~~r~~~r~~~~~~w~~~~lDaLL~Pt~~pA~~h~~~~~~~~~~~YT~l~NLLDyPA~vV 501 (573)
T 3ppm_A 422 RLAAFLNNMRPRSAEKLWKLQHEIEMYRQSVIAQWKAMNLDVLLTPMLGPALDLNTPGRATGAVSYTMLYNCLDFPAGVV 501 (573)
T ss_dssp HHHHHHHHTSBCBHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCSCCBTTCGGGCGGGGHHHHHHHHTTCCEEEE
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhcCCCEeeCCCCCCCcCCccccccccccchhhhhHhhCCCeEEE
Confidence 0000011112223344444555556667789999987789999999842 467899999999999
Q ss_pred CCCCC-----------------------------CCCCcceeecCCccCCCcceEeeeeccccceeccCCCC
Q 036327 480 PAGYD-----------------------------TEGVPFGINFGGLRGTEPKLIEIAYGFEQATMIRKPPS 522 (525)
Q Consensus 480 P~G~~-----------------------------~~GlPvGlQivg~~~~D~~LL~~A~~lE~~~~~~~~P~ 522 (525)
|+|+. .+|+||||||||++|+|++||++|+.+|++++.+++|+
T Consensus 502 Pvg~v~~~~d~~~~~~~~~~~~~~d~~~~~~~~~~~GlPVgVQiVGrr~~EEklL~~a~~IE~~l~~~~~~~ 573 (573)
T 3ppm_A 502 PVTTVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQKQPS 573 (573)
T ss_dssp EEEECCHHHHHHHTTCCCSSCSHHHHHHHHHTCSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHHCTTSCC-
T ss_pred ecccccccccccccccccccchhhhhhhhhhhhccCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcccCCC
Confidence 99964 37999999999999999999999999999999887764
No 9
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=100.00 E-value=8.8e-95 Score=756.62 Aligned_cols=393 Identities=23% Similarity=0.288 Sum_probs=326.9
Q ss_pred cchhhhhhHhhhhhhhhhhhHHhhhhhhhhccccceeeeEeCcc-hhccccchhhhhcccCCCceecccCchhhhhhhhc
Q 036327 42 ATIEGIQLAFRQNQLASRQLVQFYIGEIRRLNPVLNAVIEVNPD-ALYQADKADYERKVKAPGSLVGLRGIPVLLKDMIG 120 (525)
Q Consensus 42 ~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~~~~lna~~~~~~~-al~~A~~~d~~~~~~~g~~~gpL~GvPi~vKD~~~ 120 (525)
+|+.+|+++|++|++|++||+++||+||+++|+.+|||+++++| + + . ..||||||||+|||||+
T Consensus 2 ~~~~~l~~~i~~g~~s~~el~~a~l~ri~~~~~~lna~~~~~~~~a-~--------~------~~gpL~GvPi~vKD~~~ 66 (414)
T 1o9p_A 2 ISLADLQRRIETGELSPNAAIAQSHAAIEAREKEVHAFVRHDKSAR-A--------Q------ASGPLRGIAVGIKDIID 66 (414)
T ss_dssp CCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHCCEEEECTTCC-C--------C------SSSTTTTCEEEEETTBC
T ss_pred CCHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCccccEEEEeCHHHh-c--------c------cCCCcCCCEEEEEcccc
Confidence 58899999999999999999999999999999999999999988 5 1 1 14799999999999999
Q ss_pred ccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceeeecCCCCCCCC
Q 036327 121 TKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVLSADPCGSSSG 200 (525)
Q Consensus 121 ~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~~~~~GGSSgG 200 (525)
++| ++||+||..|.++++.+||++|+|||+||||++||||||||++ .|+ |+|+||||++|+|||||||
T Consensus 67 v~G-~~tt~Gs~~~~~~~~~~dA~~V~rL~~aGAii~GKTn~~Efa~---------~n~--G~t~NP~~~~~~pGGSSgG 134 (414)
T 1o9p_A 67 TAN-MPTEMGSEIYRGWQPRSDAPVVMMLKRAGATIIGKTTTTAFAS---------RDP--TATLNPHNTGHSPGGASSG 134 (414)
T ss_dssp CSS-SCCCTTSGGGTTCCCSSCCHHHHHHHHTTCEEEEEECCCGGGS---------SCC--CSCCBTTBTTBCCCSSSHH
T ss_pred cCC-cccCcCCHhhccCCCCCCHHHHHHHHHCCCEEEEecCCchhhc---------CCC--CCCCCCCCCCCCCCcchHH
Confidence 997 9999999999999999999999999999999999999999986 244 9999999999999999999
Q ss_pred CceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeeccceeccCCCceeee
Q 036327 201 PAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKVSSSNGSSISV 280 (525)
Q Consensus 201 saaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~~l~~~vl~g~ 280 (525)
||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++||||||| +|+++++ ++|.|+
T Consensus 135 sAaaVAag~~~~alGtDtgGSIRiPAa~cGv~GlKPT~G~vs~~G~~~~~~s~d~~Gp~arsv--~D~a~~~--~~l~g~ 210 (414)
T 1o9p_A 135 SAAAVGAGMIPLALGTQTGGSVIRPAAYCGTAAIKPSFRMLPTVGVKCYSWALDTVGLFGARA--EDLARGL--LAMTGR 210 (414)
T ss_dssp HHHHHHTTSCSEEEEEESSSTTHHHHHHHTCEEEECSTTSSCCTTBCCSCTTTCEEEEEESSH--HHHHHHH--HHHHCC
T ss_pred HHHHHHcCCCceEEeeCCchhhhHhHHHhCCeeEECCCCCCCCCCCCCCCCccCeeccccCCH--HHHHHHH--HHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999 999997
Q ss_pred ecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeeeeeeece-eeE
Q 036327 281 DYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDYLEIANI-DVI 359 (525)
Q Consensus 281 d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~~~~p~~-~~~ 359 (525)
+ ++. + ....+++||||+.++++. .++|+++++++++++.|+++||+|++ +++|.. +..
T Consensus 211 ~--~~~--------~---------~~~~~~lrig~~~~~~~~-~~~~~v~~a~~~a~~~L~~~G~~v~~-~~~~~~~~~~ 269 (414)
T 1o9p_A 211 S--EFS--------G---------IVPAKAPRIGVVRQEFAG-AVEPAAEQGLQAAIKAAERAGASVQA-IDLPEAVHEA 269 (414)
T ss_dssp G--GGS--------S---------CCCCSSCEEEECCCGGGC-CCCHHHHHHHHHHHHHHHHTTCEEEE-CCCCHHHHHH
T ss_pred C--ccc--------c---------ccCCCCCEEEEECccccC-CCCHHHHHHHHHHHHHHHHCCCEEEE-ecCcchHHHH
Confidence 5 110 1 023578999999887654 68999999999999999999999988 576632 221
Q ss_pred eecccccchhhHHHHHHHHHHHHHHHHhhchhhhHHHHHhhcccccchHHHHHhhhhhhhhhhhccCCCchhHHHHhhhh
Q 036327 360 LNATASGEATALVAEFKLALNAYVKELVASPVRSLAEVIAFNEKFSDIEKIEEFGQDIFLAAQATNGIGNTEKAALLNLA 439 (525)
Q Consensus 360 ~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r 439 (525)
. ..+..++.+|+...+.+++.... + .+.+...........++..++....+.|
T Consensus 270 ~----~~~~~~~~~e~~~~~~~~~~~~~--------------------~---~~~~~~~~~~~~g~~~~~~~~~~a~~~r 322 (414)
T 1o9p_A 270 W----RIHPIIQDFEAHRALAWEFSEHH--------------------D---EIAPMLRASLDATVGLTPKEYDEARRIG 322 (414)
T ss_dssp H----HHHHHHHHHHHHHHTHHHHHHSG--------------------G---GSCHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHHHHHHHHhCh--------------------h---hcCHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 1 11234555666655544432110 0 1122222122222333443444444455
Q ss_pred hcchhhhhhhhhhccccccccCCCC---------------ccceeeecCCCCcccCCCCCCCCCcceeecCCccCCCcce
Q 036327 440 KLSRDGFEKAMTVNKLDALVTPRSD---------------IAPVLAIGGFPGINVPAGYDTEGVPFGINFGGLRGTEPKL 504 (525)
Q Consensus 440 ~~~~~~~~~~~~~~~~DvLl~Pt~~---------------~t~~~n~~G~PaisvP~G~~~~GlPvGlQivg~~~~D~~L 504 (525)
+.+++.+.++|+ ++|+||+|+++ ||.+||++|+|++|||+|+.. |||+||||+|++|+|++|
T Consensus 323 ~~~~~~~~~~~~--~~D~ll~Pt~~~~a~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~~-GlPvGvqlvg~~~~d~~l 399 (414)
T 1o9p_A 323 RRGRRELGEVFE--GVDVLLTYSAPGTAPAKALASTGDPRYNRLWTLMGNPCVNVPVLKVG-GLPIGVQVIARFGNDAHA 399 (414)
T ss_dssp HHHHHHHHHHTT--TCSEEEEESSSSSCCBGGGCCCCCGGGTHHHHHHCCCEEEEEEEEET-TEEEEEEEEESTTCHHHH
T ss_pred HHHHHHHHHHHc--CCCEEEeCCCCCCCCcccccCCcccchhhhhHhcCCCeEEeeCCCCC-CCCeEEEEECCCCChHHH
Confidence 555777999997 59999999975 356799999999999999987 999999999999999999
Q ss_pred Eeeeecccccee
Q 036327 505 IEIAYGFEQATM 516 (525)
Q Consensus 505 L~~A~~lE~~~~ 516 (525)
|++|++||++++
T Consensus 400 L~~a~~le~~~~ 411 (414)
T 1o9p_A 400 LATAWFLEDALA 411 (414)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999999764
No 10
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=100.00 E-value=9.3e-95 Score=775.93 Aligned_cols=452 Identities=23% Similarity=0.302 Sum_probs=347.3
Q ss_pred ccchhhhhhHhhhhhhhh-hhhHHhhhhhhhhccccceeee-EeCcc-hhccccchhhhh-------cccCCCceecccC
Q 036327 41 EATIEGIQLAFRQNQLAS-RQLVQFYIGEIRRLNPVLNAVI-EVNPD-ALYQADKADYER-------KVKAPGSLVGLRG 110 (525)
Q Consensus 41 ~~s~~~l~~~~~~g~~s~-~ev~~~~l~ri~~~~~~lna~~-~~~~~-al~~A~~~d~~~-------~~~~g~~~gpL~G 110 (525)
.+++.++...|++++++. +|+++.++++|+++++.+|+++ ++.++ + .++.+.|+.. ...+|+..|||||
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~g~~~gpL~G 90 (521)
T 3a1k_A 12 DAAARHYGITLDKTARLEWPALIDGALGSYDVVDQLYADEATPPTTSRE-HAVPSASENPLSAWYVTTSIPPTSDGVLTG 90 (521)
T ss_dssp HHHHHHTTCCCCTTHHHHHHHHHHHHTHHHHHHHHHHHHHSCCCCCCCC-EECCCTTTCTTSCEEEEEEECCSSCCTTTT
T ss_pred HHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHhhhcccccccCchhh-hhccccccchhhhhHHHHhhcCCCCCCCCC
Confidence 357889999999999999 9999999999999998887777 77776 7 7777766520 0034777899999
Q ss_pred chhhhhhhhcccccCCCCcccceeeccccccccceeeeeeccceeEeeccccccccccccccCCCCcccCCCCCCCceee
Q 036327 111 IPVLLKDMIGTKDKQNTTAGSFALLGSVVARDAGVVMKLRKAGAIIMGKASLSEWADFRSLQAPNGFSARGGQGKNPYVL 190 (525)
Q Consensus 111 vPi~vKD~~~~~gg~~tt~Gs~~~~~~~~~~da~~V~~Lr~aGaIi~GKTn~~E~~~~~~~~~~~~~n~~~G~t~NP~~~ 190 (525)
|||+|||||+++| ++||+||..+.+++|.+||++|+|||+|||||+||||||||++ +..++|++||+|+||||+
T Consensus 91 vPi~vKD~i~v~G-~~Tt~Gs~~~~~~~~~~DA~vV~rLr~AGAvilGKTn~~Efa~-----~~~~~n~~~G~t~NP~~~ 164 (521)
T 3a1k_A 91 RRVAIKDNVTVAG-VPMMNGSRTVEGFTPSRDATVVTRLLAAGATVAGKAVCEDLCF-----SGSSFTPASGPVRNPWDR 164 (521)
T ss_dssp CEEEEETTBCCTT-SCBCTTCTTTTTBCCSSCCHHHHHHHHTTCEEEEEECCCGGGC-----CSSSSCCTTCCCEETTEE
T ss_pred CEEEEEcCcccCC-cccCCCChhhcCCCCCCchHHHHHHHHCCCEEEEeeChhhHhh-----CCCCCCCCCCCcCCCCCC
Confidence 9999999999997 9999999999999999999999999999999999999999999 788999999999999999
Q ss_pred ecCCCCCCCCCceeeeeeeeeeeecccCCCeeeccCCCCceeeecccccccccccceecCCCCccccceeeeeeecccee
Q 036327 191 SADPCGSSSGPAISVAANLVAVSLGTETDGSILCPSSSNSVVGIKPTVGLTSLAGVIPVSPRQDTIGDICLSLFISDAKV 270 (525)
Q Consensus 191 ~~~~GGSSgGsaaaVAag~~p~alGtDtgGSiRiPAa~~Gv~GlKPT~G~v~~~G~~~~~~~~d~~GpmaRsV~~~D~a~ 270 (525)
+|+|||||||||||||+|++++|+|||||||||+||+||||||||||+||||+.|++|+++++|++||||||| +|+++
T Consensus 165 ~~~pGGSSgGSAAAVAag~~~~alGtDtgGSIR~PAa~cGvvGlKPT~Grvs~~G~~p~~~sld~~Gp~aRsv--~D~a~ 242 (521)
T 3a1k_A 165 QREAGGSSGGSAALVANGDVDFAIGGDQGGSIRIPAAFCGVVGHKPTFGLVPYTGAFPIERTIDHLGPITRTV--HDAAL 242 (521)
T ss_dssp EEECCSSSHHHHHHHHTTSSSEEEEEESSSTTHHHHHHHTSEEEECSTTTSCCTTBCCSCGGGCEEEEEESSH--HHHHH
T ss_pred CCCCCCCCchHHHHHhcCCcceecccCCCCCCCcChHHcCCeeEecCCCcCCCCCCCCcccccCeeCceeCcH--HHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ccCCCceeeeecCCcccccceeeeecchHHHHHHHhccCCceeeeeeCCccccCCcchhHHHHHHHHHHHhhccceeeee
Q 036327 271 SSSNGSSISVDYNDPATKAASYYIPYGGYKQFLKLYGLKGKRLGIVRNPFFNFDKGSALTQAFNYHLQTLRQQGAVLVDY 350 (525)
Q Consensus 271 ~l~~~vl~g~d~~d~~~~~~~~~~p~~~~~~~~~~~~~~~lrIGv~~~~~~~~~~~~~v~~a~~~a~~~L~~~G~~Vve~ 350 (525)
++ ++|+|+|+.|+.+... .|..+|.+.+. .+++++||||+.+.+....++++++++++++++.|+++||+|++
T Consensus 243 ~l--~vlag~d~~D~~~~~~---~~~~~~~~~l~-~~~~~lrIgv~~~~~~~~~~~~~v~~a~~~a~~~L~~~Ga~v~e- 315 (521)
T 3a1k_A 243 ML--SVIAGRDGNDPRQADS---VEAGDYLSTLD-SDVDGLRIGIVREGFGHAVSQPEVDDAVRAAAHSLTEIGCTVEE- 315 (521)
T ss_dssp HH--HHHCSCCSSCTTSCTT---CCCCCSSTTTT-SCCTTCEEEEEGGGSCCSSSCHHHHHHHHHHHHGGGGGTCEEEE-
T ss_pred HH--HHHhCCCCCCcccccc---CCCcchhhhhc-cCccCcEEEEECccccccCCCHHHHHHHHHHHHHHHHCCCEEEE-
Confidence 99 9999999988665221 12223544333 35688999999875543357999999999999999999999998
Q ss_pred eeeeceeeEeecccccchhhHHHHHHHHHHHHHHH---HhhchhhhHHHHH-hhcccccchHHHHHhhhhhhhhh---hh
Q 036327 351 LEIANIDVILNATASGEATALVAEFKLALNAYVKE---LVASPVRSLAEVI-AFNEKFSDIEKIEEFGQDIFLAA---QA 423 (525)
Q Consensus 351 ~~~p~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~ 423 (525)
+++|....... .+..+...+...++.++... ........+.+.. .+...+ ...+++...... ..
T Consensus 316 v~~p~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~g~~ 386 (521)
T 3a1k_A 316 VNIPWHLHAFH----IWNVIATDGGAYQMLDGNGYGMNAEGLYDPELMAHFASRRIQH-----ADALSETVKLVALTGHH 386 (521)
T ss_dssp ECCTHHHHHHH----HHHHHHHHHHHHHTTTTTTTCSSSCSCCCHHHHHHHHHHHHHS-----GGGSCHHHHHHHHHHHH
T ss_pred eCCCchHhHHH----HHHHHHHHHHHhhhhhccccccchhhhhhHHHHHHHHHHhhhh-----hhhcCHHHHHHHHhchh
Confidence 67774322111 01111111111111000000 0000000000000 000000 001122111111 00
Q ss_pred -ccCCCchhHHHHhhhhhcchhhhhhhhhhccccccccCCCC-------------------------ccceeeecCCCCc
Q 036327 424 -TNGIGNTEKAALLNLAKLSRDGFEKAMTVNKLDALVTPRSD-------------------------IAPVLAIGGFPGI 477 (525)
Q Consensus 424 -~~~~~~~~~~a~~~~r~~~~~~~~~~~~~~~~DvLl~Pt~~-------------------------~t~~~n~~G~Pai 477 (525)
.......++...++.|+.+++.++++|+ ++|+||+||++ +|.+||++|+|+|
T Consensus 387 ~~~~~~~~~~~~a~~~r~~~~~~~~~~~~--~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~Pai 464 (521)
T 3a1k_A 387 GITTLGGASYGKARNLVPLARAAYDTALR--QFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSL 464 (521)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHHHHHHHHH--HCSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEE
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcE
Confidence 1223333444445556666778999997 59999999975 2567899999999
Q ss_pred ccCCCCCCCCCcceeecCCccCCCcceEeeeecccc-ceeccCC
Q 036327 478 NVPAGYDTEGVPFGINFGGLRGTEPKLIEIAYGFEQ-ATMIRKP 520 (525)
Q Consensus 478 svP~G~~~~GlPvGlQivg~~~~D~~LL~~A~~lE~-~~~~~~~ 520 (525)
|||+|+ .+|||+||||+|++|+|++||++|++||+ ..+|+.+
T Consensus 465 svP~g~-~~GlPvGlQlvg~~~~d~~LL~~A~~~E~~~~~~~~~ 507 (521)
T 3a1k_A 465 SVPAGL-VNGLPVGMMITGRHFDDATVLRVGRAFEKLRGAFPTP 507 (521)
T ss_dssp EEEEEE-ETTEEEEEEEECSTTCHHHHHHHHHHHHHHHCCCCCT
T ss_pred Eeeccc-CCCCCeeEEEEcCCCCHHHHHHHHHHHHHhhcccCCc
Confidence 999999 68999999999999999999999999999 7777653
No 11
>3shg_B VBHA; ampylation, adenylylation, toxin-antitoxin complex, FIC fold transfer, transferase-protein binding complex; HET: TLA; 1.50A {Bartonella schoenbuchensis R1}
Probab=39.41 E-value=14 Score=26.29 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=24.0
Q ss_pred hhhhhhHhhhhhhhhhhhHHhhhhhhhh
Q 036327 44 IEGIQLAFRQNQLASRQLVQFYIGEIRR 71 (525)
Q Consensus 44 ~~~l~~~~~~g~~s~~ev~~~~l~ri~~ 71 (525)
+.++.+.+-.|++|..++++.|.+||.+
T Consensus 32 ~l~~~erwv~GEis~~e~i~~~~~r~~~ 59 (61)
T 3shg_B 32 VVAQMERVVVGELETSDVIKDLMERIKR 59 (61)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc
Confidence 3456778889999999999999999975
No 12
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=21.92 E-value=28 Score=24.52 Aligned_cols=39 Identities=10% Similarity=0.161 Sum_probs=31.3
Q ss_pred ceeeeeeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhc
Q 036327 34 SYAFSIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRL 72 (525)
Q Consensus 34 ~~~~~~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~ 72 (525)
+...++..+++.+|.+.++.+-+++.-.-..+++||+.+
T Consensus 5 ~~~~~l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~ 43 (55)
T 2do1_A 5 SSGVELHKLKLAELKQECLARGLETKGIKQDLIHRLQAY 43 (55)
T ss_dssp CCCCCTTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHH
T ss_pred ccccCHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 346778899999999999999898866666777777655
No 13
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=21.67 E-value=31 Score=23.73 Aligned_cols=39 Identities=10% Similarity=0.219 Sum_probs=31.4
Q ss_pred ceeeeeeccchhhhhhHhhhhhhhhhhhHHhhhhhhhhc
Q 036327 34 SYAFSIKEATIEGIQLAFRQNQLASRQLVQFYIGEIRRL 72 (525)
Q Consensus 34 ~~~~~~~~~s~~~l~~~~~~g~~s~~ev~~~~l~ri~~~ 72 (525)
.+..++..+++.+|.+.++.+-++..-.-...++|+..+
T Consensus 5 ~s~~~~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~ 43 (50)
T 1zrj_A 5 SSGMDVRRLKVNELREELQRRGLDTRGLKAELAERLQAA 43 (50)
T ss_dssp SCCCCGGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHH
T ss_pred cCcCCHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 346688899999999999999998866666777777655
Done!