BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036329
(258 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U02|A Chain A, Crystal Structure Of Trehalose-6-Phosphate Phosphatase
Related Protein
Length = 239
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 91 VFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYFPTAIVSGRSREKVKEF--VELSNV 148
+FLDYDGTL PI+ +P ++ + + + ++ + F T IV+GRS E++ F ++++ +
Sbjct: 4 IFLDYDGTLVPIIXNPEESYADAGLLSLISDLKERFDTYIVTGRSPEEISRFLPLDINXI 63
Query: 149 YYAGS 153
Y G+
Sbjct: 64 CYHGA 68
>pdb|4HVZ|A Chain A, Crystal Structure Of Brucella Abortus Immunogenic Bp26
Protein
pdb|4HVZ|B Chain B, Crystal Structure Of Brucella Abortus Immunogenic Bp26
Protein
pdb|4HVZ|C Chain C, Crystal Structure Of Brucella Abortus Immunogenic Bp26
Protein
pdb|4HVZ|D Chain D, Crystal Structure Of Brucella Abortus Immunogenic Bp26
Protein
Length = 224
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 13/98 (13%)
Query: 87 KKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYFPTAIVSGRSREKVKEFVELS 146
+ + + ++ G L+ + D+P+ RA +AK A +G +V E ELS
Sbjct: 120 ESVTLGVNQGGDLNLVNDNPSAVINEARKRAVANAIAKAKTLADAAGVGLGRVVEISELS 179
Query: 147 NVYYAGSHGMDIQAPPRPVKACEGKYHTLVPGKKGNEV 184
PP P+ G++ T++ N V
Sbjct: 180 R-------------PPMPMPIARGQFRTMLAAAPDNSV 204
>pdb|1S7C|A Chain A, Crystal Structure Of Mes Buffer Bound Form Of
Glyceraldehyde 3- Phosphate Dehydrogenase From
Escherichia Coli
Length = 331
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 16/111 (14%)
Query: 56 SDTSDASYNSWMVEHPSALDSFDRMIKA------AKGKKIAVF-------LDYDGTLSPI 102
+D DA Y ++M+++ S FD ++ GKKI V L +D +
Sbjct: 33 NDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDV 92
Query: 103 VDDPNRAFMSDEMRAAVREVAKYFPTAIVSGRSREKVKEFVELSNV-YYAG 152
V + F++DE A + + +++G S++ FV+ +N YAG
Sbjct: 93 VAEATGLFLTDE--TARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAG 141
>pdb|1GAD|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAD|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1DC3|A Chain A, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC3|B Chain B, Structural Analysis Of Glyceraldehyde 3-Phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor-Induced Conformational
Changes
pdb|1DC5|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC5|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
pdb|1DC6|A Chain A, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes.
pdb|1DC6|B Chain B, Structural Analysis Of Glyceraldehyde 3-phosphate
Dehydrogenase From Escherichia Coli: Direct Evidence For
Substrate Binding And Cofactor- Induced Conformational
Changes
Length = 330
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 16/111 (14%)
Query: 56 SDTSDASYNSWMVEHPSALDSFDRMIKA------AKGKKIAVF-------LDYDGTLSPI 102
+D DA Y ++M+++ S FD ++ GKKI V L +D +
Sbjct: 32 NDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDV 91
Query: 103 VDDPNRAFMSDEMRAAVREVAKYFPTAIVSGRSREKVKEFVELSNV-YYAG 152
V + F++DE A + + +++G S++ FV+ +N YAG
Sbjct: 92 VAEATGLFLTDE--TARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAG 140
>pdb|1GAE|O Chain O, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
pdb|1GAE|P Chain P, Comparison Of The Structures Of Wild Type And A N313t
Mutant Of Escherichia Coli Glyceraldehyde 3-Phosphate
Dehydrogenases: Implication For Nad Binding And
Cooperativity
Length = 330
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 16/111 (14%)
Query: 56 SDTSDASYNSWMVEHPSALDSFDRMIKA------AKGKKIAVF-------LDYDGTLSPI 102
+D DA Y ++M+++ S FD ++ GKKI V L +D +
Sbjct: 32 NDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDV 91
Query: 103 VDDPNRAFMSDEMRAAVREVAKYFPTAIVSGRSREKVKEFVELSNV-YYAG 152
V + F++DE A + + +++G S++ FV+ +N YAG
Sbjct: 92 VAEATGLFLTDE--TARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAG 140
>pdb|2VYN|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYN|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|A Chain A, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|B Chain B, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
pdb|2VYV|C Chain C, Structure Of E.Coli Gapdh Rat Sperm Gapdh Heterotetramer
Length = 331
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 16/111 (14%)
Query: 56 SDTSDASYNSWMVEHPSALDSFDRMIKA------AKGKKIAVF-------LDYDGTLSPI 102
+D DA Y ++M+++ S FD ++ GKKI V L +D +
Sbjct: 33 NDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDV 92
Query: 103 VDDPNRAFMSDEMRAAVREVAKYFPTAIVSGRSREKVKEFVELSNV-YYAG 152
V + F++DE A + + +++G S++ FV+ +N YAG
Sbjct: 93 VAEATGLFLTDE--TARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAG 141
>pdb|2ZKR|FF Chain f, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 266
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 221 CISVHFRQVREEDYSVLQEKVKAVLRNYPD 250
C +V F QV ED L + V+A+ NY D
Sbjct: 199 CTTVAFTQVNSEDKGALAKLVEAIRTNYND 228
>pdb|4B4Y|A Chain A, Crystal Structure Of The Neuroglobin From The
Photosymbiotic Marine Acoel Symsagittifera Roscoffensis
Length = 154
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 228 QVREEDYSVLQEKVKAVLRNYPDF 251
QV EE S++ E V+ +L NY DF
Sbjct: 8 QVSEEQQSLIMEDVQVLLPNYDDF 31
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,589,413
Number of Sequences: 62578
Number of extensions: 299850
Number of successful extensions: 492
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 487
Number of HSP's gapped (non-prelim): 16
length of query: 258
length of database: 14,973,337
effective HSP length: 97
effective length of query: 161
effective length of database: 8,903,271
effective search space: 1433426631
effective search space used: 1433426631
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)