Query 036329
Match_columns 258
No_of_seqs 209 out of 1543
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 11:33:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036329.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036329hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02580 trehalose-phosphatase 100.0 4.6E-44 9.9E-49 338.4 19.3 200 58-258 89-290 (384)
2 PLN02151 trehalose-phosphatase 100.0 5.6E-42 1.2E-46 321.1 19.3 190 59-258 69-258 (354)
3 PLN03017 trehalose-phosphatase 100.0 9.5E-41 2.1E-45 313.7 19.8 191 59-258 82-272 (366)
4 PLN03064 alpha,alpha-trehalose 100.0 7.8E-35 1.7E-39 299.6 18.9 212 3-258 530-758 (934)
5 PLN03063 alpha,alpha-trehalose 100.0 4.3E-34 9.3E-39 292.4 18.6 212 3-258 446-668 (797)
6 COG1877 OtsB Trehalose-6-phosp 100.0 3.3E-34 7.2E-39 259.8 15.3 164 76-258 5-172 (266)
7 PF02358 Trehalose_PPase: Treh 100.0 3.1E-33 6.7E-38 247.6 11.3 149 92-258 1-155 (235)
8 PLN02205 alpha,alpha-trehalose 100.0 9.9E-29 2.1E-33 254.2 15.4 222 3-258 520-752 (854)
9 TIGR00685 T6PP trehalose-phosp 100.0 2.2E-28 4.7E-33 218.1 15.6 153 86-258 1-157 (244)
10 PRK14501 putative bifunctional 99.9 1.2E-26 2.5E-31 235.7 19.0 210 3-258 431-647 (726)
11 KOG1050 Trehalose-6-phosphate 99.9 5.8E-24 1.3E-28 214.9 14.4 198 3-257 443-646 (732)
12 PRK10187 trehalose-6-phosphate 99.9 5.1E-23 1.1E-27 186.4 17.5 150 87-258 13-164 (266)
13 TIGR01484 HAD-SF-IIB HAD-super 99.7 2E-16 4.2E-21 136.0 7.7 120 90-229 1-121 (204)
14 KOG1050 Trehalose-6-phosphate 99.0 3.3E-13 7.1E-18 137.2 -15.2 197 59-256 159-369 (732)
15 TIGR02471 sucr_syn_bact_C sucr 99.0 1.8E-09 3.8E-14 95.3 9.1 114 90-231 1-122 (236)
16 PRK10976 putative hydrolase; P 99.0 1.2E-09 2.5E-14 97.7 7.9 70 89-163 3-75 (266)
17 PRK01158 phosphoglycolate phos 99.0 9.8E-10 2.1E-14 95.8 6.7 69 88-161 3-74 (230)
18 PF08282 Hydrolase_3: haloacid 99.0 4.3E-09 9.3E-14 90.7 10.1 68 91-163 1-71 (254)
19 PRK15126 thiamin pyrimidine py 98.9 1.9E-09 4.2E-14 96.8 7.6 70 89-163 3-75 (272)
20 PRK10513 sugar phosphate phosp 98.9 1.7E-09 3.8E-14 96.7 7.3 69 88-161 3-77 (270)
21 TIGR01487 SPP-like sucrose-pho 98.9 1.7E-09 3.6E-14 94.1 6.6 70 89-163 2-74 (215)
22 PRK10530 pyridoxal phosphate ( 98.9 2E-09 4.4E-14 95.9 7.1 69 88-161 3-74 (272)
23 PLN02423 phosphomannomutase 98.9 2.4E-09 5.2E-14 96.0 7.5 70 86-160 5-78 (245)
24 PTZ00174 phosphomannomutase; P 98.9 2.7E-09 5.9E-14 95.3 7.5 69 87-160 4-77 (247)
25 PRK03669 mannosyl-3-phosphogly 98.9 2.7E-09 5.8E-14 96.4 7.4 71 87-162 6-80 (271)
26 TIGR00099 Cof-subfamily Cof su 98.9 3.1E-09 6.8E-14 94.6 7.2 69 90-163 1-72 (256)
27 COG0561 Cof Predicted hydrolas 98.9 3E-09 6.6E-14 95.1 6.9 70 87-161 2-74 (264)
28 TIGR01482 SPP-subfamily Sucros 98.8 6.1E-09 1.3E-13 90.3 6.4 67 91-162 1-70 (225)
29 TIGR01485 SPP_plant-cyano sucr 98.8 2.6E-08 5.6E-13 88.8 10.4 138 88-247 1-144 (249)
30 TIGR02463 MPGP_rel mannosyl-3- 98.8 9.9E-09 2.1E-13 89.3 6.8 68 90-162 1-72 (221)
31 PLN02887 hydrolase family prot 98.8 1.7E-08 3.7E-13 101.0 7.8 79 80-163 300-390 (580)
32 TIGR01486 HAD-SF-IIB-MPGP mann 98.7 1.7E-08 3.6E-13 90.2 6.5 69 90-163 1-72 (256)
33 PRK12702 mannosyl-3-phosphogly 98.7 2.4E-08 5.3E-13 92.3 7.2 71 88-163 1-74 (302)
34 TIGR02461 osmo_MPG_phos mannos 98.7 2.3E-08 5.1E-13 88.6 6.6 67 90-162 1-70 (225)
35 PRK00192 mannosyl-3-phosphogly 98.7 3.9E-08 8.4E-13 88.9 6.9 70 88-162 4-76 (273)
36 PRK14502 bifunctional mannosyl 98.6 1.1E-07 2.4E-12 96.3 7.4 73 86-163 414-489 (694)
37 PF05116 S6PP: Sucrose-6F-phos 98.4 1.6E-07 3.5E-12 84.3 2.5 128 88-248 2-143 (247)
38 smart00775 LNS2 LNS2 domain. T 98.3 1.9E-06 4E-11 72.6 6.7 70 90-159 1-88 (157)
39 KOG3189 Phosphomannomutase [Li 98.3 1.3E-05 2.8E-10 70.5 11.8 126 86-233 9-145 (252)
40 cd01427 HAD_like Haloacid deha 98.2 2.1E-06 4.6E-11 66.4 5.2 71 90-160 1-80 (139)
41 TIGR01689 EcbF-BcbF capsule bi 98.1 6.2E-06 1.4E-10 67.5 6.1 52 89-140 2-55 (126)
42 COG3769 Predicted hydrolase (H 98.1 7.4E-06 1.6E-10 73.1 6.0 72 86-163 5-80 (274)
43 TIGR01684 viral_ppase viral ph 97.9 3.1E-05 6.8E-10 71.7 7.1 71 86-159 124-200 (301)
44 PLN02382 probable sucrose-phos 97.8 3.5E-05 7.7E-10 74.4 6.8 73 86-161 7-85 (413)
45 TIGR01662 HAD-SF-IIIA HAD-supe 97.7 5.1E-05 1.1E-09 60.8 4.2 56 89-144 1-68 (132)
46 TIGR01672 AphA HAD superfamily 97.7 0.00011 2.3E-09 66.2 6.6 60 76-135 50-140 (237)
47 TIGR01664 DNA-3'-Pase DNA 3'-p 97.6 0.00016 3.4E-09 61.4 5.9 49 87-135 12-68 (166)
48 PHA03398 viral phosphatase sup 97.5 0.00028 6.1E-09 65.6 6.9 72 86-160 126-203 (303)
49 TIGR01681 HAD-SF-IIIC HAD-supe 97.5 0.00021 4.6E-09 57.8 5.3 56 89-144 1-65 (128)
50 TIGR01670 YrbI-phosphatas 3-de 97.4 0.00022 4.7E-09 59.5 4.3 54 89-144 2-63 (154)
51 TIGR00213 GmhB_yaeD D,D-heptos 97.4 0.00015 3.3E-09 61.4 3.2 47 89-135 2-52 (176)
52 TIGR01458 HAD-SF-IIA-hyp3 HAD- 97.2 0.00033 7.1E-09 63.2 3.7 48 89-138 2-50 (257)
53 PRK11009 aphA acid phosphatase 97.2 0.00098 2.1E-08 60.0 6.7 60 76-135 50-140 (237)
54 TIGR01457 HAD-SF-IIA-hyp2 HAD- 97.1 0.00081 1.8E-08 60.3 5.1 63 89-157 2-73 (249)
55 PRK09484 3-deoxy-D-manno-octul 97.0 0.00054 1.2E-08 58.7 3.4 59 87-145 20-84 (183)
56 PLN02645 phosphoglycolate phos 97.0 0.00094 2E-08 61.9 4.7 53 76-138 20-73 (311)
57 PRK10444 UMP phosphatase; Prov 96.9 0.00081 1.8E-08 60.6 3.8 48 89-142 2-50 (248)
58 PF08645 PNK3P: Polynucleotide 96.9 0.00086 1.9E-08 56.6 3.1 43 90-132 2-52 (159)
59 PRK06769 hypothetical protein; 96.8 0.0019 4.1E-08 54.8 5.2 48 88-135 4-54 (173)
60 TIGR01656 Histidinol-ppas hist 96.8 0.0013 2.9E-08 54.0 4.0 46 90-135 2-53 (147)
61 TIGR01663 PNK-3'Pase polynucle 96.8 0.0026 5.7E-08 63.5 6.2 98 65-162 141-265 (526)
62 TIGR01452 PGP_euk phosphoglyco 96.7 0.0019 4.1E-08 58.7 4.5 42 89-136 3-45 (279)
63 TIGR01261 hisB_Nterm histidino 96.7 0.0014 3E-08 55.4 3.2 46 89-134 2-54 (161)
64 TIGR01668 YqeG_hyp_ppase HAD s 96.7 0.0053 1.1E-07 52.0 6.6 55 86-144 23-79 (170)
65 PHA02530 pseT polynucleotide k 96.7 0.0051 1.1E-07 55.9 7.0 58 87-144 157-222 (300)
66 PF09419 PGP_phosphatase: Mito 96.6 0.006 1.3E-07 52.3 6.8 45 86-134 39-86 (168)
67 PRK05446 imidazole glycerol-ph 96.4 0.0036 7.8E-08 59.6 4.5 48 87-134 1-55 (354)
68 PRK08942 D,D-heptose 1,7-bisph 96.4 0.0029 6.3E-08 53.6 3.2 48 88-135 3-55 (181)
69 PF13344 Hydrolase_6: Haloacid 96.3 0.0047 1E-07 48.2 4.0 47 91-143 1-51 (101)
70 PRK13582 thrH phosphoserine ph 96.3 0.006 1.3E-07 52.0 4.7 34 111-144 69-102 (205)
71 smart00577 CPDc catalytic doma 96.2 0.0087 1.9E-07 49.4 5.3 58 87-144 1-79 (148)
72 TIGR01533 lipo_e_P4 5'-nucleot 96.2 0.0087 1.9E-07 54.8 5.6 65 75-139 62-148 (266)
73 PRK09552 mtnX 2-hydroxy-3-keto 96.2 0.007 1.5E-07 52.8 4.7 35 110-144 74-109 (219)
74 TIGR00338 serB phosphoserine p 96.1 0.007 1.5E-07 52.2 4.2 35 110-144 85-120 (219)
75 COG1778 Low specificity phosph 96.0 0.011 2.4E-07 50.4 4.7 57 86-144 6-70 (170)
76 TIGR01489 DKMTPPase-SF 2,3-dik 95.9 0.017 3.8E-07 48.0 5.8 35 110-144 72-107 (188)
77 COG2179 Predicted hydrolase of 95.9 0.025 5.4E-07 48.6 6.7 62 86-151 26-88 (175)
78 TIGR02468 sucrsPsyn_pln sucros 95.9 0.034 7.3E-07 59.6 9.1 65 87-161 769-846 (1050)
79 PF03332 PMM: Eukaryotic phosp 95.9 0.042 9.1E-07 49.1 8.3 100 115-233 1-114 (220)
80 PLN02954 phosphoserine phospha 95.8 0.0097 2.1E-07 51.5 3.9 34 111-144 85-119 (224)
81 TIGR01460 HAD-SF-IIA Haloacid 95.8 0.013 2.7E-07 52.2 4.7 47 91-143 1-51 (236)
82 PF03031 NIF: NLI interacting 95.8 0.012 2.6E-07 48.6 4.0 56 89-144 1-70 (159)
83 TIGR01459 HAD-SF-IIA-hyp4 HAD- 95.7 0.018 4E-07 51.0 5.1 46 87-138 7-53 (242)
84 TIGR01491 HAD-SF-IB-PSPlk HAD- 95.6 0.02 4.3E-07 48.2 4.9 34 111-144 81-115 (201)
85 TIGR01685 MDP-1 magnesium-depe 95.6 0.029 6.3E-07 48.2 5.8 57 88-144 2-81 (174)
86 PRK13288 pyrophosphatase PpaX; 95.4 0.018 4E-07 49.6 4.2 34 111-144 83-117 (214)
87 TIGR01488 HAD-SF-IB Haloacid D 95.3 0.021 4.7E-07 47.2 4.0 34 111-144 74-108 (177)
88 TIGR02726 phenyl_P_delta pheny 95.3 0.025 5.5E-07 48.3 4.4 61 88-148 7-73 (169)
89 PRK10826 2-deoxyglucose-6-phos 95.1 0.034 7.4E-07 48.2 4.7 34 111-144 93-127 (222)
90 TIGR03333 salvage_mtnX 2-hydro 95.0 0.029 6.2E-07 48.8 4.2 35 110-144 70-105 (214)
91 TIGR02245 HAD_IIID1 HAD-superf 95.0 0.045 9.8E-07 48.0 5.4 59 86-144 19-79 (195)
92 PRK11133 serB phosphoserine ph 94.8 0.031 6.7E-07 52.5 4.1 34 110-143 181-215 (322)
93 TIGR01675 plant-AP plant acid 94.8 0.08 1.7E-06 47.6 6.4 53 86-138 75-149 (229)
94 COG0241 HisB Histidinol phosph 94.5 0.033 7.1E-07 48.4 3.0 45 88-132 5-54 (181)
95 TIGR02251 HIF-SF_euk Dullard-l 94.4 0.077 1.7E-06 44.7 5.1 56 89-144 2-76 (162)
96 TIGR01456 CECR5 HAD-superfamil 94.3 0.092 2E-06 48.9 5.8 44 90-139 2-53 (321)
97 TIGR01686 FkbH FkbH-like domai 94.3 0.13 2.8E-06 47.8 6.8 58 87-144 2-66 (320)
98 COG0560 SerB Phosphoserine pho 94.3 0.031 6.7E-07 49.3 2.5 36 109-144 76-112 (212)
99 PRK13222 phosphoglycolate phos 94.1 0.058 1.3E-06 46.3 3.9 34 111-144 94-128 (226)
100 TIGR02250 FCP1_euk FCP1-like p 94.1 0.089 1.9E-06 44.3 4.8 60 85-144 3-92 (156)
101 PF08235 LNS2: LNS2 (Lipin/Ned 94.0 0.075 1.6E-06 45.2 4.2 52 90-141 1-59 (157)
102 TIGR03351 PhnX-like phosphonat 94.0 0.085 1.8E-06 45.5 4.6 34 111-144 88-122 (220)
103 PLN03243 haloacid dehalogenase 93.9 0.091 2E-06 47.6 4.9 34 111-144 110-144 (260)
104 PRK13225 phosphoglycolate phos 93.9 0.065 1.4E-06 48.9 4.0 34 111-144 143-177 (273)
105 PRK08238 hypothetical protein; 93.9 0.17 3.8E-06 50.0 7.2 50 107-156 69-121 (479)
106 TIGR01680 Veg_Stor_Prot vegeta 93.9 0.12 2.7E-06 47.6 5.7 53 86-138 99-174 (275)
107 PF06888 Put_Phosphatase: Puta 93.8 0.12 2.5E-06 46.7 5.2 35 110-144 71-108 (234)
108 COG0647 NagD Predicted sugar p 93.7 0.13 2.7E-06 47.4 5.5 48 88-141 8-59 (269)
109 COG0637 Predicted phosphatase/ 93.6 0.09 2E-06 46.3 4.2 35 110-144 86-121 (221)
110 TIGR02137 HSK-PSP phosphoserin 93.5 0.096 2.1E-06 45.8 4.2 35 110-144 68-102 (203)
111 PTZ00445 p36-lilke protein; Pr 93.4 0.17 3.8E-06 45.1 5.5 62 76-138 30-104 (219)
112 COG0546 Gph Predicted phosphat 93.2 0.16 3.6E-06 44.3 5.2 35 110-144 89-124 (220)
113 PF12689 Acid_PPase: Acid Phos 93.0 0.17 3.7E-06 43.4 4.8 58 88-145 3-82 (169)
114 PF03767 Acid_phosphat_B: HAD 92.6 0.02 4.4E-07 51.1 -1.5 56 86-141 70-147 (229)
115 PLN02940 riboflavin kinase 92.3 0.15 3.3E-06 48.8 4.0 33 111-143 94-127 (382)
116 PRK11590 hypothetical protein; 92.0 0.083 1.8E-06 45.9 1.7 14 87-100 5-18 (211)
117 PLN02575 haloacid dehalogenase 91.9 0.18 3.9E-06 48.6 3.9 34 111-144 217-251 (381)
118 PF06941 NT5C: 5' nucleotidase 91.7 0.24 5.2E-06 42.4 4.2 28 110-137 73-101 (191)
119 TIGR01548 HAD-SF-IA-hyp1 haloa 91.3 0.1 2.3E-06 44.4 1.5 13 90-102 2-14 (197)
120 PRK10725 fructose-1-P/6-phosph 90.6 0.29 6.3E-06 40.9 3.6 30 87-125 4-33 (188)
121 TIGR02252 DREG-2 REG-2-like, H 90.2 0.2 4.2E-06 42.6 2.2 14 89-102 1-14 (203)
122 TIGR02253 CTE7 HAD superfamily 89.7 0.45 9.8E-06 40.8 4.1 16 88-103 2-17 (221)
123 TIGR01990 bPGM beta-phosphoglu 89.7 0.28 6.2E-06 40.7 2.8 28 90-126 1-28 (185)
124 PRK11587 putative phosphatase; 89.7 0.17 3.7E-06 43.9 1.5 15 88-102 3-17 (218)
125 TIGR01493 HAD-SF-IA-v2 Haloaci 89.4 0.26 5.7E-06 40.7 2.4 14 90-103 1-14 (175)
126 COG4087 Soluble P-type ATPase 89.2 0.48 1E-05 39.5 3.7 49 92-146 18-66 (152)
127 TIGR02009 PGMB-YQAB-SF beta-ph 88.9 0.2 4.3E-06 41.6 1.3 14 89-102 2-15 (185)
128 TIGR01545 YfhB_g-proteo haloac 88.4 0.26 5.6E-06 43.2 1.7 33 111-143 95-129 (210)
129 PHA02597 30.2 hypothetical pro 88.4 0.23 4.9E-06 42.2 1.3 15 89-103 3-17 (197)
130 PLN02770 haloacid dehalogenase 88.4 0.24 5.1E-06 44.1 1.5 16 86-101 20-35 (248)
131 PRK10748 flavin mononucleotide 88.2 0.33 7.1E-06 42.9 2.2 16 87-102 9-24 (238)
132 TIGR01993 Pyr-5-nucltdase pyri 87.9 0.28 6E-06 41.2 1.6 13 90-102 2-14 (184)
133 KOG3120 Predicted haloacid deh 87.6 1.4 3.1E-05 39.8 5.8 35 110-144 84-120 (256)
134 TIGR01422 phosphonatase phosph 87.4 0.32 6.9E-06 43.1 1.7 32 112-143 101-133 (253)
135 TIGR01549 HAD-SF-IA-v1 haloaci 87.0 0.48 1E-05 38.3 2.4 13 90-102 1-13 (154)
136 PRK14988 GMP/IMP nucleotidase; 86.4 0.32 7E-06 42.7 1.1 33 111-143 94-127 (224)
137 PRK13226 phosphoglycolate phos 86.1 0.35 7.6E-06 42.4 1.2 15 88-102 12-26 (229)
138 TIGR02254 YjjG/YfnB HAD superf 86.0 0.36 7.8E-06 41.2 1.2 14 89-102 2-15 (224)
139 COG4359 Uncharacterized conser 85.8 1.6 3.5E-05 38.5 5.1 35 109-143 72-107 (220)
140 PLN02779 haloacid dehalogenase 85.6 0.46 1E-05 43.5 1.8 17 86-102 38-54 (286)
141 PRK13478 phosphonoacetaldehyde 85.6 0.42 9.1E-06 42.8 1.5 32 112-143 103-135 (267)
142 TIGR01454 AHBA_synth_RP 3-amin 85.1 0.35 7.5E-06 41.3 0.7 11 91-101 1-11 (205)
143 PRK13223 phosphoglycolate phos 84.7 0.82 1.8E-05 41.4 3.0 14 89-102 14-27 (272)
144 PRK10563 6-phosphogluconate ph 84.1 0.54 1.2E-05 40.5 1.5 15 88-102 4-18 (221)
145 PRK09449 dUMP phosphatase; Pro 84.0 0.51 1.1E-05 40.7 1.3 32 112-143 97-128 (224)
146 PF12710 HAD: haloacid dehalog 83.6 0.57 1.2E-05 38.9 1.3 27 117-143 96-123 (192)
147 TIGR01544 HAD-SF-IE haloacid d 83.3 3.7 7.9E-05 38.0 6.6 37 108-144 119-156 (277)
148 TIGR01449 PGP_bact 2-phosphogl 82.5 0.49 1.1E-05 40.3 0.5 34 111-144 86-120 (213)
149 TIGR01490 HAD-SF-IB-hyp1 HAD-s 82.5 0.55 1.2E-05 39.7 0.9 13 90-102 1-13 (202)
150 TIGR01428 HAD_type_II 2-haloal 82.4 0.69 1.5E-05 39.2 1.4 14 89-102 2-15 (198)
151 TIGR02247 HAD-1A3-hyp Epoxide 81.9 0.78 1.7E-05 39.2 1.6 14 89-102 3-16 (211)
152 TIGR01509 HAD-SF-IA-v3 haloaci 81.2 0.6 1.3E-05 38.4 0.6 13 90-102 1-13 (183)
153 PF11019 DUF2608: Protein of u 80.1 5.2 0.00011 36.3 6.3 69 75-143 5-115 (252)
154 COG1011 Predicted hydrolase (H 79.8 1.1 2.4E-05 38.3 1.8 26 110-135 99-124 (229)
155 PRK06698 bifunctional 5'-methy 79.5 0.94 2E-05 44.1 1.4 13 89-101 242-254 (459)
156 PF13419 HAD_2: Haloacid dehal 78.8 0.84 1.8E-05 36.5 0.7 35 110-144 77-112 (176)
157 PRK09456 ?-D-glucose-1-phospha 78.5 1.1 2.5E-05 38.1 1.5 14 89-102 1-14 (199)
158 COG3700 AphA Acid phosphatase 77.8 5.2 0.00011 35.2 5.3 68 76-143 50-148 (237)
159 KOG2882 p-Nitrophenyl phosphat 76.0 6 0.00013 37.1 5.5 42 90-137 24-66 (306)
160 PF07700 HNOB: Heme NO binding 74.2 6.6 0.00014 33.1 5.0 113 108-250 41-158 (171)
161 KOG1618 Predicted phosphatase 74.1 4.7 0.0001 38.4 4.3 66 86-157 33-112 (389)
162 PF06189 5-nucleotidase: 5'-nu 65.9 14 0.00029 34.1 5.4 59 86-144 119-205 (264)
163 PF06437 ISN1: IMP-specific 5' 65.3 27 0.00058 34.0 7.4 57 80-139 138-196 (408)
164 PF05152 DUF705: Protein of un 64.7 30 0.00064 32.4 7.4 80 58-142 93-175 (297)
165 TIGR01511 ATPase-IB1_Cu copper 64.6 14 0.00029 37.3 5.7 61 86-148 383-444 (562)
166 TIGR01525 ATPase-IB_hvy heavy 64.3 15 0.00033 36.7 6.0 57 86-144 362-420 (556)
167 PF00702 Hydrolase: haloacid d 63.5 4.1 9E-05 34.1 1.5 14 89-102 2-15 (215)
168 COG3882 FkbH Predicted enzyme 61.5 18 0.0004 36.3 5.7 75 71-145 204-291 (574)
169 PLN02919 haloacid dehalogenase 57.9 4.8 0.00011 43.7 1.2 16 86-101 73-88 (1057)
170 cd04256 AAK_P5CS_ProBA AAK_P5C 57.1 32 0.00069 31.7 6.3 19 84-102 191-209 (284)
171 TIGR02399 salt_tol_Pase glucos 56.2 20 0.00042 34.5 4.7 46 85-132 5-50 (389)
172 KOG2134 Polynucleotide kinase 55.7 15 0.00032 35.8 4.0 78 85-162 72-172 (422)
173 KOG3109 Haloacid dehalogenase- 54.0 13 0.00028 33.7 3.0 30 87-121 14-43 (244)
174 PRK10671 copA copper exporting 53.1 37 0.0008 35.8 6.8 78 65-144 606-685 (834)
175 TIGR01691 enolase-ppase 2,3-di 53.1 7 0.00015 34.7 1.2 14 89-102 2-15 (220)
176 PLN02177 glycerol-3-phosphate 52.9 7.3 0.00016 38.9 1.5 14 88-101 22-35 (497)
177 COG2503 Predicted secreted aci 52.7 25 0.00054 32.4 4.7 69 70-138 61-151 (274)
178 TIGR00071 hisT_truA pseudourid 50.9 21 0.00046 31.7 3.9 54 88-141 2-56 (227)
179 PF13419 HAD_2: Haloacid dehal 50.8 14 0.00031 29.3 2.6 11 91-101 1-11 (176)
180 PF09506 Salt_tol_Pase: Glucos 50.2 27 0.00059 33.5 4.7 43 88-132 2-44 (381)
181 TIGR01454 AHBA_synth_RP 3-amin 48.8 24 0.00052 29.8 3.9 36 109-144 74-110 (205)
182 KOG4549 Magnesium-dependent ph 47.6 44 0.00095 27.9 4.9 54 88-141 18-76 (144)
183 PRK11033 zntA zinc/cadmium/mer 46.5 48 0.001 34.6 6.3 61 86-148 546-607 (741)
184 TIGR00735 hisF imidazoleglycer 45.2 94 0.002 27.8 7.3 80 76-155 112-207 (254)
185 CHL00202 argB acetylglutamate 45.0 73 0.0016 29.2 6.7 21 82-102 191-211 (284)
186 COG0436 Aspartate/tyrosine/aro 44.4 76 0.0017 30.4 6.9 58 74-138 150-207 (393)
187 KOG2116 Protein involved in pl 42.9 29 0.00062 36.0 3.9 80 85-164 527-617 (738)
188 COG0548 ArgB Acetylglutamate k 42.1 1.1E+02 0.0023 28.3 7.2 67 79-145 170-256 (265)
189 COG0101 TruA Pseudouridylate s 41.3 42 0.00091 30.9 4.4 53 88-140 3-56 (266)
190 COG1608 Predicted archaeal kin 39.8 1.3E+02 0.0029 27.5 7.3 66 79-144 155-242 (252)
191 cd04251 AAK_NAGK-UC AAK_NAGK-U 39.3 80 0.0017 28.4 5.9 61 83-143 176-250 (257)
192 TIGR01092 P5CS delta l-pyrroli 38.3 85 0.0018 32.8 6.6 61 84-144 180-265 (715)
193 PRK00358 pyrH uridylate kinase 37.9 85 0.0018 27.5 5.7 61 83-144 146-222 (231)
194 TIGR02254 YjjG/YfnB HAD superf 37.3 53 0.0011 27.7 4.2 35 110-144 97-131 (224)
195 TIGR01428 HAD_type_II 2-haloal 36.8 48 0.001 27.7 3.9 34 111-144 93-127 (198)
196 PRK14058 acetylglutamate/acety 36.6 80 0.0017 28.5 5.5 20 82-101 179-198 (268)
197 TIGR02253 CTE7 HAD superfamily 36.1 46 0.00099 28.2 3.6 34 110-143 94-128 (221)
198 TIGR01512 ATPase-IB2_Cd heavy 36.0 55 0.0012 32.7 4.7 56 88-145 342-399 (536)
199 PTZ00489 glutamate 5-kinase; P 35.9 1.2E+02 0.0027 27.6 6.6 18 84-101 160-177 (264)
200 cd04239 AAK_UMPK-like AAK_UMPK 35.6 80 0.0017 27.7 5.2 61 84-144 145-220 (229)
201 cd04242 AAK_G5K_ProB AAK_G5K_P 35.3 67 0.0015 28.7 4.7 19 83-101 154-172 (251)
202 TIGR02009 PGMB-YQAB-SF beta-ph 34.9 54 0.0012 26.8 3.8 33 109-143 87-120 (185)
203 PF12710 HAD: haloacid dehalog 34.4 37 0.0008 27.9 2.7 13 91-103 1-13 (192)
204 PRK13478 phosphonoacetaldehyde 34.1 51 0.0011 29.3 3.8 15 71-85 100-114 (267)
205 TIGR01497 kdpB K+-transporting 34.0 87 0.0019 32.7 5.8 58 85-144 423-481 (675)
206 PRK09449 dUMP phosphatase; Pro 34.0 56 0.0012 27.8 3.9 6 78-83 101-106 (224)
207 PLN02770 haloacid dehalogenase 33.8 59 0.0013 28.7 4.1 35 110-144 108-143 (248)
208 TIGR01548 HAD-SF-IA-hyp1 haloa 33.7 56 0.0012 27.4 3.8 30 115-144 111-141 (197)
209 PRK14588 tRNA pseudouridine sy 33.7 56 0.0012 30.0 4.0 54 88-141 3-57 (272)
210 TIGR01549 HAD-SF-IA-v1 haloaci 33.5 51 0.0011 26.2 3.3 32 113-144 67-99 (154)
211 PRK00021 truA tRNA pseudouridi 33.1 61 0.0013 29.0 4.1 54 88-141 3-57 (244)
212 PF00702 Hydrolase: haloacid d 32.3 49 0.0011 27.5 3.2 53 90-144 109-162 (215)
213 cd00006 PTS_IIA_man PTS_IIA, P 32.2 1.5E+02 0.0033 23.2 5.9 50 78-143 48-100 (122)
214 PRK11590 hypothetical protein; 31.9 71 0.0015 27.4 4.2 33 112-144 97-131 (211)
215 PRK13587 1-(5-phosphoribosyl)- 31.2 1.5E+02 0.0033 26.3 6.3 46 87-144 162-212 (234)
216 PRK12314 gamma-glutamyl kinase 30.9 1.7E+02 0.0037 26.5 6.7 18 84-101 167-184 (266)
217 COG5663 Uncharacterized conser 30.6 23 0.0005 30.9 0.8 45 112-156 74-126 (194)
218 cd04254 AAK_UMPK-PyrH-Ec UMP k 30.5 1.1E+02 0.0024 26.9 5.3 62 83-144 146-222 (231)
219 cd04255 AAK_UMPK-MosAB AAK_UMP 30.5 1.7E+02 0.0038 26.5 6.6 18 83-100 173-190 (262)
220 PRK11587 putative phosphatase; 29.7 70 0.0015 27.4 3.8 34 110-143 83-117 (218)
221 TIGR01490 HAD-SF-IB-hyp1 HAD-s 29.4 83 0.0018 26.2 4.1 35 110-144 87-122 (202)
222 COG4996 Predicted phosphatase 28.9 27 0.00059 29.4 1.0 51 89-139 1-71 (164)
223 PRK14557 pyrH uridylate kinase 28.5 2.5E+02 0.0053 25.3 7.2 60 85-144 153-228 (247)
224 PLN02418 delta-1-pyrroline-5-c 28.3 1.7E+02 0.0037 30.6 6.9 61 84-144 188-273 (718)
225 KOG2924 Deoxyhypusine synthase 28.1 2.5E+02 0.0053 26.6 7.1 65 87-162 95-162 (366)
226 PLN02499 glycerol-3-phosphate 27.7 31 0.00068 34.6 1.3 15 87-101 7-21 (498)
227 TIGR00321 dhys deoxyhypusine s 27.5 2.7E+02 0.0059 26.2 7.4 63 87-160 44-109 (301)
228 cd04253 AAK_UMPK-PyrH-Pf AAK_U 27.5 1.1E+02 0.0025 26.5 4.8 18 84-101 128-145 (221)
229 PRK14558 pyrH uridylate kinase 27.4 1.7E+02 0.0037 25.6 5.9 61 84-144 145-220 (231)
230 PRK13223 phosphoglycolate phos 27.1 83 0.0018 28.3 3.9 35 110-144 101-136 (272)
231 PLN02779 haloacid dehalogenase 26.8 91 0.002 28.4 4.2 35 110-144 144-179 (286)
232 PRK12434 tRNA pseudouridine sy 26.5 98 0.0021 27.8 4.2 54 88-141 3-58 (245)
233 KOG2961 Predicted hydrolase (H 26.4 1.3E+02 0.0028 26.1 4.6 43 87-133 42-87 (190)
234 PRK12484 nicotinate phosphorib 26.4 1.3E+02 0.0027 29.8 5.3 36 64-100 198-233 (443)
235 cd04250 AAK_NAGK-C AAK_NAGK-C: 26.3 2E+02 0.0044 26.0 6.3 19 83-101 189-207 (279)
236 PRK00724 formate dehydrogenase 26.3 32 0.00069 31.4 1.0 74 80-155 152-229 (263)
237 PF01380 SIS: SIS domain SIS d 26.2 1.3E+02 0.0029 22.9 4.5 46 85-143 52-98 (131)
238 COG5083 SMP2 Uncharacterized p 25.7 36 0.00078 33.9 1.3 57 85-141 372-435 (580)
239 cd02966 TlpA_like_family TlpA- 25.5 1.4E+02 0.003 21.3 4.3 26 73-98 37-63 (116)
240 TIGR02076 pyrH_arch uridylate 25.4 2.1E+02 0.0045 24.8 6.0 18 84-101 128-145 (221)
241 PRK00942 acetylglutamate kinas 25.1 2.4E+02 0.0052 25.5 6.6 19 83-101 193-211 (283)
242 KOG3085 Predicted hydrolase (H 25.0 48 0.001 30.0 1.9 16 87-102 6-21 (237)
243 TIGR01509 HAD-SF-IA-v3 haloaci 24.8 1E+02 0.0023 24.8 3.8 29 110-138 85-114 (183)
244 PRK14988 GMP/IMP nucleotidase; 24.6 1E+02 0.0022 26.8 4.0 14 88-101 10-23 (224)
245 PRK10886 DnaA initiator-associ 24.4 3.7E+02 0.0079 23.4 7.3 47 85-144 108-155 (196)
246 PRK03971 putative deoxyhypusin 24.1 2.3E+02 0.005 27.0 6.4 64 87-161 65-131 (334)
247 PRK14586 tRNA pseudouridine sy 23.7 1.1E+02 0.0023 27.6 3.9 53 88-140 3-56 (245)
248 cd07014 S49_SppA Signal peptid 23.6 94 0.002 26.0 3.4 13 113-125 25-37 (177)
249 TIGR02075 pyrH_bact uridylate 23.5 1.8E+02 0.0039 25.6 5.3 61 84-144 148-224 (233)
250 PF04007 DUF354: Protein of un 23.1 1.2E+02 0.0025 28.9 4.2 42 115-156 16-59 (335)
251 TIGR01691 enolase-ppase 2,3-di 22.9 1.1E+02 0.0025 26.9 3.9 35 110-144 95-130 (220)
252 cd04249 AAK_NAGK-NC AAK_NAGK-N 22.8 3.8E+02 0.0083 23.7 7.3 18 83-101 167-184 (252)
253 cd04241 AAK_FomA-like AAK_FomA 22.6 2.7E+02 0.0058 24.6 6.3 18 84-101 160-177 (252)
254 COG2217 ZntA Cation transport 22.5 2.3E+02 0.0049 29.9 6.5 55 87-143 516-571 (713)
255 TIGR01522 ATPase-IIA2_Ca golgi 21.9 1.9E+02 0.0041 30.9 5.9 57 86-144 501-563 (884)
256 TIGR01993 Pyr-5-nucltdase pyri 21.7 1.3E+02 0.0027 24.9 3.8 33 110-144 84-116 (184)
257 cd02115 AAK Amino Acid Kinases 21.6 1.9E+02 0.004 25.1 5.0 19 83-101 162-180 (248)
258 TIGR01106 ATPase-IIC_X-K sodiu 21.5 1.1E+02 0.0024 33.2 4.1 35 110-144 568-603 (997)
259 KOG3040 Predicted sugar phosph 21.5 1.2E+02 0.0025 27.6 3.6 50 87-142 6-59 (262)
260 PRK10725 fructose-1-P/6-phosph 21.3 1.7E+02 0.0036 24.0 4.4 29 116-144 93-121 (188)
261 TIGR01027 proB glutamate 5-kin 21.1 3E+02 0.0066 26.2 6.7 61 84-144 156-243 (363)
262 TIGR01545 YfhB_g-proteo haloac 21.1 1.5E+02 0.0032 25.7 4.2 15 87-101 4-18 (210)
263 PRK06698 bifunctional 5'-methy 21.1 1.2E+02 0.0026 29.5 4.0 36 109-144 329-365 (459)
264 PRK05279 N-acetylglutamate syn 21.0 2.9E+02 0.0062 26.7 6.6 60 82-141 198-277 (441)
265 cd07018 S49_SppA_67K_type Sign 21.0 1.5E+02 0.0033 25.8 4.3 13 113-125 32-44 (222)
266 PF14639 YqgF: Holliday-juncti 21.0 2E+02 0.0043 24.0 4.8 50 88-137 21-75 (150)
267 PLN02811 hydrolase 20.8 1.5E+02 0.0033 25.3 4.3 31 110-140 78-109 (220)
268 PF04312 DUF460: Protein of un 20.7 99 0.0021 25.9 2.8 47 90-141 45-94 (138)
269 PRK13226 phosphoglycolate phos 20.4 1.2E+02 0.0026 26.2 3.5 35 110-144 95-130 (229)
270 PRK14556 pyrH uridylate kinase 20.2 2.5E+02 0.0055 25.6 5.6 60 85-144 164-238 (249)
271 PF13380 CoA_binding_2: CoA bi 20.2 1.1E+02 0.0024 24.1 2.9 47 110-156 63-111 (116)
No 1
>PLN02580 trehalose-phosphatase
Probab=100.00 E-value=4.6e-44 Score=338.37 Aligned_cols=200 Identities=53% Similarity=0.921 Sum_probs=177.6
Q ss_pred CCchhhhhhhhhCCCCCccHHHHHHHhccCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhCCEEEEecCChh
Q 036329 58 TSDASYNSWMVEHPSALDSFDRMIKAAKGKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYFPTAIVSGRSRE 137 (258)
Q Consensus 58 ~~~~~~~~w~~~~p~~l~~~~~i~~~~~~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~~V~IvSGR~~~ 137 (258)
..+.+|.+||.+||+||.+|+.|.++.++++++|||||||||+||+++|+.+.++++++++|++|+++++|+|||||+++
T Consensus 89 ~~~~~~~~~~~~~p~al~~~~~~~~~~~~k~~~LfLDyDGTLaPIv~~Pd~A~~s~~~~~aL~~La~~~~VAIVSGR~~~ 168 (384)
T PLN02580 89 DTDFAYRTWMLKYPSALTSFEQIANFAKGKKIALFLDYDGTLSPIVDDPDRALMSDAMRSAVKNVAKYFPTAIISGRSRD 168 (384)
T ss_pred cchHHHHHHHHhCcHHHHHHHHHHHHhhcCCeEEEEecCCccCCCCCCcccccCCHHHHHHHHHHhhCCCEEEEeCCCHH
Confidence 45889999999999999999999999889999999999999999999999999999999999999999899999999999
Q ss_pred hHHHHhcccCceEEccCCccccCCCCCCc-cccCccccccCC-CCCCcccccccccCchHHHHHHHHHHHHHhccCceEE
Q 036329 138 KVKEFVELSNVYYAGSHGMDIQAPPRPVK-ACEGKYHTLVPG-KKGNEVLFQPAKKFLPAIQEIIKELEEETKKIQGARI 215 (258)
Q Consensus 138 ~l~~~~~~~~l~lig~hG~~i~~p~g~~~-~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~r~pGs~V 215 (258)
++++++++++++|+|+||++++.|.+... ..|.. |....+ .+++++.++++.+++++++++.+.|.++++++||++|
T Consensus 169 ~L~~~l~~~~l~laGsHG~e~~~p~~~~~~~~~~~-~~~~~~~~g~~~~~~~~a~~~~~~i~~v~~~l~e~~~~~pGs~V 247 (384)
T PLN02580 169 KVYELVGLTELYYAGSHGMDIMGPVRESVSNDHPN-CIKSTDQQGKEVNLFQPASEFLPMIDEVFRSLVESTKDIKGAKV 247 (384)
T ss_pred HHHHHhCCCCccEEEeCCceeecCCCCcccccccc-cccccccccccccccccchhhhhhHHHHHHHHHHHhccCCCCEE
Confidence 99999999999999999999998765321 24543 222222 3444556778778888889999999999999999999
Q ss_pred EecCceEEEEcCCCChhcHHHHHHHHHHHHhhCCCcEEeCCCC
Q 036329 216 EDNRFCISVHFRQVREEDYSVLQEKVKAVLRNYPDFDLSEGKK 258 (258)
Q Consensus 216 E~K~~sla~HYR~a~~~~~~~~~~~~~~~l~~~p~l~l~~GKk 258 (258)
|+|++||+||||+|+++.++.+++.++.+++.+|++++++||+
T Consensus 248 E~K~~svavHYR~a~~~~~~~~~~~l~~~l~~~~~l~v~~Gk~ 290 (384)
T PLN02580 248 ENHKFCVSVHYRNVDEKNWPLVAQCVHDVLKKYPRLRLTHGRK 290 (384)
T ss_pred EecCcEEEEEeCCCCchHHHHHHHHHHHHHHhCCceEEEeCCe
Confidence 9999999999999999988999999999999999999999985
No 2
>PLN02151 trehalose-phosphatase
Probab=100.00 E-value=5.6e-42 Score=321.05 Aligned_cols=190 Identities=55% Similarity=0.952 Sum_probs=169.1
Q ss_pred CchhhhhhhhhCCCCCccHHHHHHHhccCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhCCEEEEecCChhh
Q 036329 59 SDASYNSWMVEHPSALDSFDRMIKAAKGKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYFPTAIVSGRSREK 138 (258)
Q Consensus 59 ~~~~~~~w~~~~p~~l~~~~~i~~~~~~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~~V~IvSGR~~~~ 138 (258)
...+|.+||++||+||++|++++...++++++|||||||||+||+++|+.+.++++++++|++|++++.|+|||||+++.
T Consensus 69 ~~~~~~~w~~~~p~a~~~~~~~~~~~~~~~~ll~lDyDGTL~PIv~~P~~A~~~~~~~~aL~~La~~~~vaIvSGR~~~~ 148 (354)
T PLN02151 69 SFNKQSCWIKEHPSALNMFEEILHKSEGKQIVMFLDYDGTLSPIVDDPDRAFMSKKMRNTVRKLAKCFPTAIVSGRCREK 148 (354)
T ss_pred chhhHHHHHHhCChHHHHHHHHHHhhcCCceEEEEecCccCCCCCCCcccccCCHHHHHHHHHHhcCCCEEEEECCCHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred HHHHhcccCceEEccCCccccCCCCCCccccCccccccCCCCCCcccccccccCchHHHHHHHHHHHHHhccCceEEEec
Q 036329 139 VKEFVELSNVYYAGSHGMDIQAPPRPVKACEGKYHTLVPGKKGNEVLFQPAKKFLPAIQEIIKELEEETKKIQGARIEDN 218 (258)
Q Consensus 139 l~~~~~~~~l~lig~hG~~i~~p~g~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~r~pGs~VE~K 218 (258)
+.+++++++++|+|+||++++.|++.. .|++ +++...++++.++.++++++.+.|.++++++||++||+|
T Consensus 149 l~~~~~~~~l~laGsHG~e~~~p~~g~--~~~~--------~~~~~~~~~~~~~~~~i~~v~~~l~~~~~~~pG~~VE~K 218 (354)
T PLN02151 149 VSSFVKLTELYYAGSHGMDIKGPEQGS--KYKK--------ENQSLLCQPATEFLPVINEVYKKLVEKTKSIPGAKVENN 218 (354)
T ss_pred HHHHcCCccceEEEeCCceeecCCCCc--cccc--------cccccccccchhhHHHHHHHHHHHHHHHhcCCCCEEEec
Confidence 999999999999999999999875421 3431 122233566667788888888899999999999999999
Q ss_pred CceEEEEcCCCChhcHHHHHHHHHHHHhhCCCcEEeCCCC
Q 036329 219 RFCISVHFRQVREEDYSVLQEKVKAVLRNYPDFDLSEGKK 258 (258)
Q Consensus 219 ~~sla~HYR~a~~~~~~~~~~~~~~~l~~~p~l~l~~GKk 258 (258)
++||+||||+++++.++.+...++.+++.+|+|++++|||
T Consensus 219 ~~slavHYR~a~~~~~~~l~~~l~~v~~~~~~l~v~~Gkk 258 (354)
T PLN02151 219 KFCASVHFRCVEENKWSDLANQVRSVLKNYPKLMLTQGRK 258 (354)
T ss_pred CcEEEEEeCCCChHHHHHHHHHHHHHHhhCCCcEEecCCE
Confidence 9999999999999877778888889999999999999996
No 3
>PLN03017 trehalose-phosphatase
Probab=100.00 E-value=9.5e-41 Score=313.75 Aligned_cols=191 Identities=50% Similarity=0.943 Sum_probs=172.2
Q ss_pred CchhhhhhhhhCCCCCccHHHHHHHhccCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhCCEEEEecCChhh
Q 036329 59 SDASYNSWMVEHPSALDSFDRMIKAAKGKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYFPTAIVSGRSREK 138 (258)
Q Consensus 59 ~~~~~~~w~~~~p~~l~~~~~i~~~~~~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~~V~IvSGR~~~~ 138 (258)
.+..|.+|+.+|||||+.|+.|++.+++++++|||||||||+||+++|+.+.++++++++|++|++...|+|+|||++..
T Consensus 82 ~~~~~~~w~~~~psal~~~~~~~~~~~~k~~llflD~DGTL~Piv~~p~~a~i~~~~~~aL~~La~~~~vaIvSGR~~~~ 161 (366)
T PLN03017 82 SQQQLNSWIMQHPSALEMFEQIMEASRGKQIVMFLDYDGTLSPIVDDPDKAFMSSKMRRTVKKLAKCFPTAIVTGRCIDK 161 (366)
T ss_pred chhhhhHHHhhCChHHHHHHHHHHHhcCCCeEEEEecCCcCcCCcCCcccccCCHHHHHHHHHHhcCCcEEEEeCCCHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999778899999999999
Q ss_pred HHHHhcccCceEEccCCccccCCCCCCccccCccccccCCCCCCcccccccccCchHHHHHHHHHHHHHhccCceEEEec
Q 036329 139 VKEFVELSNVYYAGSHGMDIQAPPRPVKACEGKYHTLVPGKKGNEVLFQPAKKFLPAIQEIIKELEEETKKIQGARIEDN 218 (258)
Q Consensus 139 l~~~~~~~~l~lig~hG~~i~~p~g~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~r~pGs~VE~K 218 (258)
+.+++++.+++|+|+||++++.|++. |.. .+.+++++.++++.+++++++++...|+++++++||++||+|
T Consensus 162 l~~~~~l~~l~l~g~hGa~i~~p~~~----~~~-----~~~~~~~~~~~~~~~~~~~i~~v~~~L~~~~~~~pGa~VE~K 232 (366)
T PLN03017 162 VYNFVKLAELYYAGSHGMDIKGPAKG----FSR-----HKRVKQSLLYQPANDYLPMIDEVYRQLLEKTKSTPGAKVENH 232 (366)
T ss_pred HHHhhcccCceEEEcCCcEEecCCCc----cee-----ccccccccccccchhhHHHHHHHHHHHHHHHhcCCCCEEEec
Confidence 99998888899999999999988653 211 122334455677777888999999999999999999999999
Q ss_pred CceEEEEcCCCChhcHHHHHHHHHHHHhhCCCcEEeCCCC
Q 036329 219 RFCISVHFRQVREEDYSVLQEKVKAVLRNYPDFDLSEGKK 258 (258)
Q Consensus 219 ~~sla~HYR~a~~~~~~~~~~~~~~~l~~~p~l~l~~GKk 258 (258)
++||+||||+++++.++.+...++.+++.+|+|++++|||
T Consensus 233 ~~~vavHyR~ad~~~~~~l~~~~~~vl~~~~~l~v~~Gkk 272 (366)
T PLN03017 233 KFCASVHFRCVDEKKWSELVLQVRSVLKNFPTLKLTQGRK 272 (366)
T ss_pred CcEEEEEcCcCCHHHHHHHHHHHHHHHHhCCCcEEeCCCe
Confidence 9999999999999888888999999999999999999996
No 4
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=100.00 E-value=7.8e-35 Score=299.63 Aligned_cols=212 Identities=11% Similarity=0.134 Sum_probs=180.7
Q ss_pred hHHHhhHHHHHHhhccCCCccccccccc-ccccccccCCCCcccccccCCCCCCCCCCchhhhhhhhhCCCCCccHHHHH
Q 036329 3 SEIQRNFAKLSQAMGFQRSPSSKQKVKP-ISKENNDENGGDHSINARTTSNPPDSDTSDASYNSWMVEHPSALDSFDRMI 81 (258)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~p~~l~~~~~i~ 81 (258)
.+++++|.++++.+..|+...|...|+. |.+++.++..+.....|++ ..+.+.
T Consensus 530 ~Er~~r~~~~~~~V~~~d~~~Wa~~fl~~L~~~~~~~~~~~~~~~~~l--------------------------~~~~~~ 583 (934)
T PLN03064 530 EEREKRHRHNFMHVTTHTAQEWAETFVSELNDTVVEAQLRTRQVPPQL--------------------------PPEDAI 583 (934)
T ss_pred HHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhhhhccccccCCCC--------------------------CHHHHH
Confidence 4789999999999999999999999888 8877766655565666777 889999
Q ss_pred HHhc-cCCEEEEEecCCccCCCCCCCC---------CccCCHHHHHHHHHHHhhC--CEEEEecCChhhHHHHhcccCce
Q 036329 82 KAAK-GKKIAVFLDYDGTLSPIVDDPN---------RAFMSDEMRAAVREVAKYF--PTAIVSGRSREKVKEFVELSNVY 149 (258)
Q Consensus 82 ~~~~-~k~~ll~lD~DGTL~~~~~~p~---------~~~~~~~~~~aL~~L~~~~--~V~IvSGR~~~~l~~~~~~~~l~ 149 (258)
+.|+ +++++|||||||||+|++++|+ .+.++++++++|++|++++ .|+|||||+.++|+++|+..+++
T Consensus 584 ~~y~~a~~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~~L~ 663 (934)
T PLN03064 584 QRYLQSNNRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEFDMW 663 (934)
T ss_pred HHHHhccceEEEEecCceeccCCCCcccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCCCce
Confidence 9997 8899999999999999999997 7789999999999999996 59999999999999999977899
Q ss_pred EEccCCccccCCCCCCccccCccccccCCCCCCcccccccccCchHHHHHHHHHHHHHhccCceEEEecCceEEEEcCCC
Q 036329 150 YAGSHGMDIQAPPRPVKACEGKYHTLVPGKKGNEVLFQPAKKFLPAIQEIIKELEEETKKIQGARIEDNRFCISVHFRQV 229 (258)
Q Consensus 150 lig~hG~~i~~p~g~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~r~pGs~VE~K~~sla~HYR~a 229 (258)
++|+||++++.+++ .|+.. ..+. ....|++.+..+|+++++++||++||+|+++|+||||++
T Consensus 664 LaAEHG~~~R~~~~----~w~~~-------------~~~~-~~~~W~~~v~~ile~~~eRtPGS~IE~K~~SLawHYR~A 725 (934)
T PLN03064 664 LAAENGMFLRHTKG----EWMTT-------------MPEH-LNMDWVDSVKHVFEYFTERTPRSHFETRETSLVWNYKYA 725 (934)
T ss_pred EEeeCCeEEecCCC----cceec-------------cccc-cchHHHHHHHHHHHHHHhcCCCcEEEEcCcEEEEEecCC
Confidence 99999999998765 47410 1221 124799999999999999999999999999999999999
Q ss_pred ChhcHHHHHHHHHHHH-hh---CCCcEEeCCCC
Q 036329 230 REEDYSVLQEKVKAVL-RN---YPDFDLSEGKK 258 (258)
Q Consensus 230 ~~~~~~~~~~~~~~~l-~~---~p~l~l~~GKk 258 (258)
|++++..++.++...+ .. .+++++++||+
T Consensus 726 Dpe~g~~qA~el~~~L~~~~~~~~~v~V~~Gk~ 758 (934)
T PLN03064 726 DVEFGRLQARDMLQHLWTGPISNAAVDVVQGSR 758 (934)
T ss_pred ChhhHHHHHHHHHHHHHhhhccCCCcEEEeCCe
Confidence 8888777666665555 32 35699999996
No 5
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=100.00 E-value=4.3e-34 Score=292.43 Aligned_cols=212 Identities=10% Similarity=0.086 Sum_probs=176.5
Q ss_pred hHHHhhHHHHHHhhccCCCccccccccc-ccccccccCCCCcccccccCCCCCCCCCCchhhhhhhhhCCCCCccHHHHH
Q 036329 3 SEIQRNFAKLSQAMGFQRSPSSKQKVKP-ISKENNDENGGDHSINARTTSNPPDSDTSDASYNSWMVEHPSALDSFDRMI 81 (258)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~p~~l~~~~~i~ 81 (258)
.+++++|.++++.+..|+...|...|+. +.++.+.+........|++ +.+.+.
T Consensus 446 ~er~~r~~~~~~~v~~~~~~~Wa~~fl~~l~~~~~~~~~~~~~~~~~l--------------------------~~~~~~ 499 (797)
T PLN03063 446 EERETRHRHNFQYVKTHSAQKWADDFMSELNDIIVEAELRTRNIPLEL--------------------------PEQDVI 499 (797)
T ss_pred HHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHhhhhhhcccCCCCCC--------------------------CHHHHH
Confidence 4688999999999999999999999988 7777776654444555666 788999
Q ss_pred HHhc-cCCEEEEEecCCccCCCCCC---CCCccCCHHHHHHHHHHHhhC--CEEEEecCChhhHHHHhcccCceEEccCC
Q 036329 82 KAAK-GKKIAVFLDYDGTLSPIVDD---PNRAFMSDEMRAAVREVAKYF--PTAIVSGRSREKVKEFVELSNVYYAGSHG 155 (258)
Q Consensus 82 ~~~~-~k~~ll~lD~DGTL~~~~~~---p~~~~~~~~~~~aL~~L~~~~--~V~IvSGR~~~~l~~~~~~~~l~lig~hG 155 (258)
+.|+ +++++|||||||||+|+.++ |..+.++++++++|++|++++ .|+|||||+.+.++++++..+++++|+||
T Consensus 500 ~~y~~a~~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~~~l~l~aeHG 579 (797)
T PLN03063 500 QQYSKSNNRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGEYNIWLAAENG 579 (797)
T ss_pred HHHHhccCeEEEEecCccccCCCCCccccccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCCCCCcEEEeCC
Confidence 9997 88999999999999999774 477899999999999999986 49999999999999999987899999999
Q ss_pred ccccCCCCCCccccCccccccCCCCCCcccccccccCchHHHHHHHHHHHHHhccCceEEEecCceEEEEcCCCChhcHH
Q 036329 156 MDIQAPPRPVKACEGKYHTLVPGKKGNEVLFQPAKKFLPAIQEIIKELEEETKKIQGARIEDNRFCISVHFRQVREEDYS 235 (258)
Q Consensus 156 ~~i~~p~g~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~r~pGs~VE~K~~sla~HYR~a~~~~~~ 235 (258)
++++.+++ .|+.. ..+ .....|++.+.++|+++++++||++||+|+++|+||||++|++.+.
T Consensus 580 ~~~r~~~~----~w~~~-------------~~~-~~~~~w~~~v~~~l~~~~~rtpGs~iE~K~~sla~HyR~adp~~g~ 641 (797)
T PLN03063 580 MFLRHTSG----EWVTT-------------MPE-HMNLDWVDGVKNVFKYFTDRTPRSYVEKSETSLVWNYEYADVEFGR 641 (797)
T ss_pred EEEecCCC----ceeec-------------ccc-ccChhHHHHHHHHHHHHHHhCCCcEEEEcCeEEEEEcCCCChHHHH
Confidence 99987655 47520 111 1125799999999999999999999999999999999999888765
Q ss_pred HHHHHHHHHH-hh---CCCcEEeCCCC
Q 036329 236 VLQEKVKAVL-RN---YPDFDLSEGKK 258 (258)
Q Consensus 236 ~~~~~~~~~l-~~---~p~l~l~~GKk 258 (258)
.++.++...+ +. .+++++++||+
T Consensus 642 ~~a~el~~~l~~~~~~~~~~~v~~Gk~ 668 (797)
T PLN03063 642 AQARDMLQHLWAGPISNASVDVVRGQK 668 (797)
T ss_pred HHHHHHHHHHHHhhccCCCcEEEECCe
Confidence 5555555444 32 34699999996
No 6
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-34 Score=259.83 Aligned_cols=164 Identities=23% Similarity=0.365 Sum_probs=142.0
Q ss_pred cHHHHHHHhc-cCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhCC--EEEEecCChhhHHHHhcccCceEEc
Q 036329 76 SFDRMIKAAK-GKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYFP--TAIVSGRSREKVKEFVELSNVYYAG 152 (258)
Q Consensus 76 ~~~~i~~~~~-~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~~--V~IvSGR~~~~l~~~~~~~~l~lig 152 (258)
.++.+...|. +++++|||||||||+++.++|..+.++++++++|++|+++++ |+|+|||+..+++.++++++++++|
T Consensus 5 ~~~~~~~~~~~a~~~~~~lDyDGTl~~i~~~p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~v~~i~l~a 84 (266)
T COG1877 5 QSNQLLEPYLNARKRLLFLDYDGTLTEIVPHPEAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFGVPGIGLIA 84 (266)
T ss_pred hhhhhccccccccceEEEEeccccccccccCccccCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcCCCCccEEE
Confidence 3455666665 999999999999999999999999999999999999999976 9999999999999999999999999
Q ss_pred cCCccccCCCCCCccccCccccccCCCCCCcccccccccCchHHHHHHHHHHHHHhccCceEEEecCceEEEEcCCCChh
Q 036329 153 SHGMDIQAPPRPVKACEGKYHTLVPGKKGNEVLFQPAKKFLPAIQEIIKELEEETKKIQGARIEDNRFCISVHFRQVREE 232 (258)
Q Consensus 153 ~hG~~i~~p~g~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~r~pGs~VE~K~~sla~HYR~a~~~ 232 (258)
+||++++.++|. .|++ .....+++|+++|.++|+++++++||+.||+|+++++||||+|+++
T Consensus 85 ehGa~~r~~~g~---~~~~---------------~~~~~~~~~~~~v~~~l~~~v~r~pGs~iE~K~~a~~~Hyr~a~~~ 146 (266)
T COG1877 85 EHGAEVRDPNGK---WWIN---------------LAEEADLRWLKEVAAILEYYVERTPGSYIERKGFAVALHYRNAEDD 146 (266)
T ss_pred ecceEEecCCCC---eeEe---------------cCHHHHhhHHHHHHHHHHHHhhcCCCeEEEEcCcEEEEeeccCCch
Confidence 999999999886 3442 3345678999999999999999999999999999999999999998
Q ss_pred cHHHHHHHHHHHHhhCCC-cEEeCCCC
Q 036329 233 DYSVLQEKVKAVLRNYPD-FDLSEGKK 258 (258)
Q Consensus 233 ~~~~~~~~~~~~l~~~p~-l~l~~GKk 258 (258)
....++...+.. ...+. ++++.||+
T Consensus 147 ~~~~~a~~~~~~-~~~~~~~~v~~gk~ 172 (266)
T COG1877 147 EGAALALAEAAT-LINELKLRVTPGKM 172 (266)
T ss_pred hhHHHHHHHHHh-ccccccEEEEeCce
Confidence 765555544433 33444 99999985
No 7
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=100.00 E-value=3.1e-33 Score=247.56 Aligned_cols=149 Identities=37% Similarity=0.571 Sum_probs=112.4
Q ss_pred EEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhCC--EEEEecCChhhHHHHhcccCceEEccCCccccCCCCCCcccc
Q 036329 92 FLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYFP--TAIVSGRSREKVKEFVELSNVYYAGSHGMDIQAPPRPVKACE 169 (258)
Q Consensus 92 ~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~~--V~IvSGR~~~~l~~~~~~~~l~lig~hG~~i~~p~g~~~~~W 169 (258)
||||||||+|++++|+.+.++++++++|++|++++. |+|||||+++++..++++++++|+|+||++++.+++. .|
T Consensus 1 ~lDyDGTL~p~~~~p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~~~~~~~i~l~gehG~e~~~~~~~---~~ 77 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDPDAAVPPPELRELLRALAADPNNTVAIVSGRSLDDLERFGGIPNIGLAGEHGAEIRRPGGS---EW 77 (235)
T ss_dssp EEE-TTTSS---S-GGG----HHHHHHHHHHHHHSE--EEEE-SS-HHHHHHH-S-SS-EEEEGGGTEEEETTE----EE
T ss_pred CcccCCccCCCCCCccccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHHhcCCCCceEEEEeeEEeccCccc---cc
Confidence 799999999999999999999999999999999975 9999999999988888899999999999999998775 34
Q ss_pred CccccccCCCCCCcccccccccCchHHHHHHHHHHHHHhccCceEEEecCceEEEEcCCCChh----cHHHHHHHHHHHH
Q 036329 170 GKYHTLVPGKKGNEVLFQPAKKFLPAIQEIIKELEEETKKIQGARIEDNRFCISVHFRQVREE----DYSVLQEKVKAVL 245 (258)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~r~pGs~VE~K~~sla~HYR~a~~~----~~~~~~~~~~~~l 245 (258)
.. .+.....+|++.+.++|+++++++||++||+|++||+||||+|+++ ....+...+.+++
T Consensus 78 ~~---------------~~~~~~~~~~~~~~~~l~~~~~~~pG~~iE~K~~sv~~Hyr~~~~~~~~~~~~~l~~~l~~~~ 142 (235)
T PF02358_consen 78 TN---------------LPADEDLEWKDEVREILEYFAERTPGSFIEDKEFSVAFHYRNAPPEFGEAQARELAEQLREIL 142 (235)
T ss_dssp E----------------TTGGGGHHHHHHHHHHHTTHHHHSTT-EEEEETTEEEEE-TTS-ST----THHHHHHHHHHHH
T ss_pred cc---------------cccccchHHHHHHHHHHHHHHhhccCcEEEECCeEEEEEecCCCcchhhhHHHHHHHHHHHHH
Confidence 31 2344567899999999999999999999999999999999999998 3455666677777
Q ss_pred hhCCCcEEeCCCC
Q 036329 246 RNYPDFDLSEGKK 258 (258)
Q Consensus 246 ~~~p~l~l~~GKk 258 (258)
..+|+++++.||+
T Consensus 143 ~~~~~~~v~~g~~ 155 (235)
T PF02358_consen 143 ASHPGLEVVPGKK 155 (235)
T ss_dssp HHH-T-EEEE-SS
T ss_pred HhCCCEEEEECCC
Confidence 7788899999986
No 8
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=99.96 E-value=9.9e-29 Score=254.16 Aligned_cols=222 Identities=18% Similarity=0.162 Sum_probs=166.7
Q ss_pred hHHHhhHHHHHHhhccCCCccccccccc-ccccccccCCCCcccccccCCCCCCCCCCchhhhhhhhhCCCCCc--cHHH
Q 036329 3 SEIQRNFAKLSQAMGFQRSPSSKQKVKP-ISKENNDENGGDHSINARTTSNPPDSDTSDASYNSWMVEHPSALD--SFDR 79 (258)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~p~~l~--~~~~ 79 (258)
.++++||.++++.+..|+...|...|+. +.++.+++.++...-+-. ....-+..+.+.+. +.+.
T Consensus 520 ~Er~~R~~~~~~~v~~~d~~~W~~~fl~~l~~~~~~~~~~~~~~~g~-------------g~~~~~~~~~~~~~~l~~~~ 586 (854)
T PLN02205 520 PEKQLRHEKHYRYVSTHDVGYWARSFLQDLERTCRDHSRRRCWGIGF-------------GLSFRVVALDPNFRKLSMEH 586 (854)
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHhhhhhccccc-------------ccccccccccccccccCHHH
Confidence 5789999999999999999999999888 766544332211111000 00000111111121 5688
Q ss_pred HHHHhc-cCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhC--CEEEEecCChhhHHHHhcc-cCceEEccCC
Q 036329 80 MIKAAK-GKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYF--PTAIVSGRSREKVKEFVEL-SNVYYAGSHG 155 (258)
Q Consensus 80 i~~~~~-~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~--~V~IvSGR~~~~l~~~~~~-~~l~lig~hG 155 (258)
++++|+ +++++|||||||||+|+.+. ...++++++++|++|++++ .|+|||||+++.++++|+. ++++++|+||
T Consensus 587 i~~~y~~~~~rlI~LDyDGTLlp~~~~--~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~~~~~l~laaEHG 664 (854)
T PLN02205 587 IVSAYKRTTTRAILLDYDGTLMPQASI--DKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFSPCEKLGIAAEHG 664 (854)
T ss_pred HHHHHHhhcCeEEEEecCCcccCCccc--cCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhCCCCCeEEEEeCC
Confidence 999997 89999999999999997643 5678999999999998874 5999999999999999985 5799999999
Q ss_pred ccccCCCCCCccccCccccccCCCCCCcccccccccCchHHHHHHHHHHHHHhccCceEEEecCceEEEEcCCCChhcHH
Q 036329 156 MDIQAPPRPVKACEGKYHTLVPGKKGNEVLFQPAKKFLPAIQEIIKELEEETKKIQGARIEDNRFCISVHFRQVREEDYS 235 (258)
Q Consensus 156 ~~i~~p~g~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~r~pGs~VE~K~~sla~HYR~a~~~~~~ 235 (258)
++++.+++. .|+. ..+.. ...|++.+..++++|++++||++||+|+++++||||+++++.+.
T Consensus 665 ~~ir~~~~~---~w~~--------------~~~~~-~~~w~~~v~~i~~~y~ertpGs~IE~K~~slv~HyR~adpd~~~ 726 (854)
T PLN02205 665 YFLRLKRDV---EWET--------------CVPVA-DCSWKQIAEPVMQLYTETTDGSTIEDKETALVWCYEDADPDFGS 726 (854)
T ss_pred EEEEeCCCc---eeee--------------cchhh-hHHHHHHHHHHHHHHhcCCCchhheecceEEEEehhhCChHHhh
Confidence 999987654 5642 11211 24689999999999999999999999999999999999887654
Q ss_pred ----HHHHHHHHHHhhCCCcEEeCCCC
Q 036329 236 ----VLQEKVKAVLRNYPDFDLSEGKK 258 (258)
Q Consensus 236 ----~~~~~~~~~l~~~p~l~l~~GKk 258 (258)
.+...+...+.+.+ +.+..||+
T Consensus 727 ~qa~el~~~l~~~l~~~~-~~v~~G~~ 752 (854)
T PLN02205 727 CQAKELLDHLESVLANEP-VTVKSGQN 752 (854)
T ss_pred hhhHHHHHHHHHHHhcCc-eEEEECCc
Confidence 34444455555665 78888874
No 9
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=99.96 E-value=2.2e-28 Score=218.09 Aligned_cols=153 Identities=28% Similarity=0.344 Sum_probs=117.0
Q ss_pred cCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhC--CEEEEecCChhhHHHHhcccCceEEccCCccccCCCC
Q 036329 86 GKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYF--PTAIVSGRSREKVKEFVELSNVYYAGSHGMDIQAPPR 163 (258)
Q Consensus 86 ~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~--~V~IvSGR~~~~l~~~~~~~~l~lig~hG~~i~~p~g 163 (258)
+|+++|||||||||+++.++|+.+.++++++++|++|++++ .|+|+|||+..++..++.+++++++|+||++++. +|
T Consensus 1 ~~~~~l~lD~DGTL~~~~~~p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~~~~~~~~~~~~~~~l~g~hG~~~~~-~g 79 (244)
T TIGR00685 1 ARKRAFFFDYDGTLSEIVPDPDAAVVSDRLLTILQKLAARPHNAIWIISGRKFLEKWLGVKLPGLGLAGEHGCEMKD-NG 79 (244)
T ss_pred CCcEEEEEecCccccCCcCCCcccCCCHHHHHHHHHHHhCCCCeEEEEECCChhhccccCCCCceeEEeecCEEEec-CC
Confidence 57899999999999999999999999999999999999986 3789999999999988888889999999999987 34
Q ss_pred CCccccCccccccCCCCCCcccccccccCchHHHHHHHHHHHHHhccCceEEEecCceEEEEcCCCCh-hcHHHHHHHH-
Q 036329 164 PVKACEGKYHTLVPGKKGNEVLFQPAKKFLPAIQEIIKELEEETKKIQGARIEDNRFCISVHFRQVRE-EDYSVLQEKV- 241 (258)
Q Consensus 164 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~r~pGs~VE~K~~sla~HYR~a~~-~~~~~~~~~~- 241 (258)
... .|.. +......|.+.+.++++++.++ ||++||+|++||+||||++++ +.+..++..+
T Consensus 80 ~~~-~~~~----------------~~~~~~~~~~~~~~l~~~~~~~-pG~~iE~K~~s~~~hyr~a~d~~~~~~~~~~~~ 141 (244)
T TIGR00685 80 SCQ-DWVN----------------LTEKIPSWKVRANELREEITTR-PGVFIERKGVALAWHYRQAPVPELARFRAKELK 141 (244)
T ss_pred Ccc-eeee----------------chhhhhhHHHHHHHHHHHHhcC-CCcEEEecceEEEEEeccCCCcHHHHHHHHHHH
Confidence 321 3431 1112234665666666666665 999999999999999999954 4443333333
Q ss_pred HHHHhhCCCcEEeCCCC
Q 036329 242 KAVLRNYPDFDLSEGKK 258 (258)
Q Consensus 242 ~~~l~~~p~l~l~~GKk 258 (258)
..++.. .++.++.|++
T Consensus 142 ~~~~~~-~~~~v~~g~~ 157 (244)
T TIGR00685 142 EKILSF-TDLEVMDGKA 157 (244)
T ss_pred HHHhcC-CCEEEEECCe
Confidence 333333 3688888874
No 10
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.95 E-value=1.2e-26 Score=235.68 Aligned_cols=210 Identities=19% Similarity=0.254 Sum_probs=173.5
Q ss_pred hHHHhhHHHHHHhhccCCCccccccccc-ccccccccCCCCcccccccCCCCCCCCCCchhhhhhhhhCCCCCccHHHHH
Q 036329 3 SEIQRNFAKLSQAMGFQRSPSSKQKVKP-ISKENNDENGGDHSINARTTSNPPDSDTSDASYNSWMVEHPSALDSFDRMI 81 (258)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~p~~l~~~~~i~ 81 (258)
.++++++.++++.+..++...|...|+. +.++.+.+.....+.++++ .++.+.
T Consensus 431 ~e~~~r~~~~~~~v~~~~~~~w~~~~l~~l~~~~~~~~~~~~~~~~~~--------------------------~~~~~~ 484 (726)
T PRK14501 431 EEQRERMQAMQERLRRYDVHKWASDFLDELREAAEKNKAFASKPITPA--------------------------AAEEII 484 (726)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhhccccccCCcc--------------------------CHHHHH
Confidence 3567889999999999999999999988 7777776655555555555 789999
Q ss_pred HHhc-cCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhC--CEEEEecCChhhHHHHhcccCceEEccCCccc
Q 036329 82 KAAK-GKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYF--PTAIVSGRSREKVKEFVELSNVYYAGSHGMDI 158 (258)
Q Consensus 82 ~~~~-~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~--~V~IvSGR~~~~l~~~~~~~~l~lig~hG~~i 158 (258)
++|+ +++++|+|||||||+++..+|+.+.++++++++|++|++++ .|+|+|||+...++++++..+++++|+||+++
T Consensus 485 ~~y~~~~~rLi~~D~DGTL~~~~~~~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~~l~liaenG~~i 564 (726)
T PRK14501 485 ARYRAASRRLLLLDYDGTLVPFAPDPELAVPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDLPIHLVAEHGAWS 564 (726)
T ss_pred HHHHhccceEEEEecCccccCCCCCcccCCCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCCCeEEEEeCCEEE
Confidence 9997 88999999999999999888988999999999999999963 69999999999999999966789999999999
Q ss_pred cCCCCCCccccCccccccCCCCCCcccccccccCchHHHHHHHHHHHHHhccCceEEEecCceEEEEcCCCChhcHHHHH
Q 036329 159 QAPPRPVKACEGKYHTLVPGKKGNEVLFQPAKKFLPAIQEIIKELEEETKKIQGARIEDNRFCISVHFRQVREEDYSVLQ 238 (258)
Q Consensus 159 ~~p~g~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~r~pGs~VE~K~~sla~HYR~a~~~~~~~~~ 238 (258)
+.+++ .|.. ... ....|++.+.++|+++.+++||+++|+|+++++||||+++++.+..++
T Consensus 565 ~~~~~----~w~~--------------~~~--~~~~w~~~v~~il~~~~~~~~gs~ie~k~~~l~~~~r~~d~~~~~~~a 624 (726)
T PRK14501 565 RAPGG----EWQL--------------LEP--VATEWKDAVRPILEEFVDRTPGSFIEEKEASLAWHYRNADPELGEARA 624 (726)
T ss_pred eCCCC----ceEE--------------CCC--cchhHHHHHHHHHHHHHhcCCCcEEEEcceEEEEEccCCCHHHHHHHH
Confidence 87655 3542 111 135699999999999999999999999999999999999988766655
Q ss_pred HHHHHHHhh---CCCcEEeCCCC
Q 036329 239 EKVKAVLRN---YPDFDLSEGKK 258 (258)
Q Consensus 239 ~~~~~~l~~---~p~l~l~~GKk 258 (258)
+.+...+.. ...+.++.|++
T Consensus 625 ~~l~~~l~~~~~~~~~~v~~g~~ 647 (726)
T PRK14501 625 NELILALSSLLSNAPLEVLRGNK 647 (726)
T ss_pred HHHHHHHHHHhcCCCeEEEECCe
Confidence 555444332 23578877763
No 11
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=99.91 E-value=5.8e-24 Score=214.85 Aligned_cols=198 Identities=17% Similarity=0.151 Sum_probs=163.7
Q ss_pred hHHHhhHHHHHHhhccCCCccccccccc-ccccccccCCCCcccccccCCCCCCCCCCchhhhhhhhhCCCCCccHHHHH
Q 036329 3 SEIQRNFAKLSQAMGFQRSPSSKQKVKP-ISKENNDENGGDHSINARTTSNPPDSDTSDASYNSWMVEHPSALDSFDRMI 81 (258)
Q Consensus 3 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~p~~l~~~~~i~ 81 (258)
.+++.+|.+++..+.-|+..+|...+.. +...+..+. .+...+|.+ .-+.++
T Consensus 443 ~e~~~r~~~~~~~v~~~~~~~W~~~~~~~l~~~~~~~~-~~~~~~~~l--------------------------~~~~~i 495 (732)
T KOG1050|consen 443 EERELREPKHYKYVSTHDVVYWAKSFLQGLKRIWKVGF-LGFRVTPLL--------------------------TAEHIV 495 (732)
T ss_pred HHHhhcchhhhhhhcchhHHHHHHHHHHhhhhhhhhcc-ccccccccc--------------------------ChhHhh
Confidence 3678899999999999999999998887 555554443 333333333 557889
Q ss_pred HHhc-cCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhC--CEEEEecCChhhHHHHhc-ccCceEEccCCcc
Q 036329 82 KAAK-GKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYF--PTAIVSGRSREKVKEFVE-LSNVYYAGSHGMD 157 (258)
Q Consensus 82 ~~~~-~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~--~V~IvSGR~~~~l~~~~~-~~~l~lig~hG~~ 157 (258)
..|+ +++|+|+||||||+++..+ . .+...|+.|+.++ .|+|+|||+...++.++. .+++|++||||++
T Consensus 496 ~~y~~s~~rli~ldyd~t~~~~~~--~------~~~~~l~~L~~dp~n~v~i~s~~~r~~l~~~~~~~~~lgl~aEhG~f 567 (732)
T KOG1050|consen 496 SDYKKSKKRLILLDYDLTLIPPRS--I------KAISILKDLCSDPKNIVYIVSGRGRSVLEKWFFGCKNLGLAAEHGYF 567 (732)
T ss_pred hhhhhccceEEEecccccccCCCC--c------hHHHHHHHHhcCCCCeEEEEEccCchhhhhhccccccceeecccCce
Confidence 9997 9999999999988887432 1 1899999999996 399999999999988765 7899999999999
Q ss_pred ccCCCCCCccccCccccccCCCCCCcccccccccCchHHHHHHHHHHHHHhccCceEEEecCceEEEEcCCCChhcHHHH
Q 036329 158 IQAPPRPVKACEGKYHTLVPGKKGNEVLFQPAKKFLPAIQEIIKELEEETKKIQGARIEDNRFCISVHFRQVREEDYSVL 237 (258)
Q Consensus 158 i~~p~g~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~r~pGs~VE~K~~sla~HYR~a~~~~~~~~ 237 (258)
++.+++ |+. .. ..++|++.+.+++++|++||||+++|.|+.+++||||+|+++.+..+
T Consensus 568 ~r~~~~-----w~~----------------~~-~~~~w~~~v~~i~~~~~ert~GS~ie~k~~~l~~hy~~ad~~~g~~q 625 (732)
T KOG1050|consen 568 VRIPGK-----WET----------------CV-LDLDWKDLVKDIFQYYTERTPGSYIERKETALVWHYRNADPEFGELQ 625 (732)
T ss_pred eccCCc-----eee----------------ec-ccccHHHHHHHHHHHHHhcCCCceecccCceEEEeeeccCcchhHHH
Confidence 998865 753 11 34689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-CCCcEEeCCC
Q 036329 238 QEKVKAVLRN-YPDFDLSEGK 257 (258)
Q Consensus 238 ~~~~~~~l~~-~p~l~l~~GK 257 (258)
+.++.+.+.. .-+..+..||
T Consensus 626 A~el~~~l~~~~~~~~v~~g~ 646 (732)
T KOG1050|consen 626 AKELLEHLESKNEPVEVVRGK 646 (732)
T ss_pred HHHHHHHhcccCCCeEEEecC
Confidence 9999887776 4458888886
No 12
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=99.90 E-value=5.1e-23 Score=186.43 Aligned_cols=150 Identities=22% Similarity=0.332 Sum_probs=120.7
Q ss_pred CCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh--CCEEEEecCChhhHHHHhcccCceEEccCCccccCCCCC
Q 036329 87 KKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY--FPTAIVSGRSREKVKEFVELSNVYYAGSHGMDIQAPPRP 164 (258)
Q Consensus 87 k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~--~~V~IvSGR~~~~l~~~~~~~~l~lig~hG~~i~~p~g~ 164 (258)
.+++|||||||||++++++|+...++++++++|++|+++ ..|+|+|||+...+..+++..++.++|+||++++.+++.
T Consensus 13 ~~~li~~D~DGTLl~~~~~p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~ 92 (266)
T PRK10187 13 ANYAWFFDLDGTLAEIKPHPDQVVVPDNILQGLQLLATANDGALALISGRSMVELDALAKPYRFPLAGVHGAERRDINGK 92 (266)
T ss_pred CCEEEEEecCCCCCCCCCCcccccCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcccceEEEeCCCeeecCCCC
Confidence 478999999999999999999999999999999999985 469999999999999999866678999999999876553
Q ss_pred CccccCccccccCCCCCCcccccccccCchHHHHHHHHHHHHHhccCceEEEecCceEEEEcCCCChhcHHHHHHHHHHH
Q 036329 165 VKACEGKYHTLVPGKKGNEVLFQPAKKFLPAIQEIIKELEEETKKIQGARIEDNRFCISVHFRQVREEDYSVLQEKVKAV 244 (258)
Q Consensus 165 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~r~pGs~VE~K~~sla~HYR~a~~~~~~~~~~~~~~~ 244 (258)
|.. .+- ..++.+.+.+.++++++++||++||+|++++++|||+++++ .+.+....+.+
T Consensus 93 ----~~~---------------~~l--~~~~~~~i~~~l~~~~~~~pg~~ve~k~~~~~~h~r~~~~~-~~~~~~l~~~i 150 (266)
T PRK10187 93 ----THI---------------VHL--PDAIARDISVQLHTALAQLPGAELEAKGMAFALHYRQAPQH-EDALLALAQRI 150 (266)
T ss_pred ----eee---------------ccC--ChhHHHHHHHHHHHHhccCCCcEEEeCCcEEEEECCCCCcc-HHHHHHHHHHH
Confidence 211 111 12467788888888899999999999999999999999653 24444444455
Q ss_pred HhhCCCcEEeCCCC
Q 036329 245 LRNYPDFDLSEGKK 258 (258)
Q Consensus 245 l~~~p~l~l~~GKk 258 (258)
.+.++.+.+..|++
T Consensus 151 ~~~~~~~~~~~g~~ 164 (266)
T PRK10187 151 TQIWPQLALQPGKC 164 (266)
T ss_pred HhhCCceEEeCCCE
Confidence 55666677777763
No 13
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=99.66 E-value=2e-16 Score=136.04 Aligned_cols=120 Identities=25% Similarity=0.312 Sum_probs=89.8
Q ss_pred EEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhcccCceEEccCCccccCCCCCCccc
Q 036329 90 AVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVELSNVYYAGSHGMDIQAPPRPVKAC 168 (258)
Q Consensus 90 ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~~~~l~lig~hG~~i~~p~g~~~~~ 168 (258)
+|++||||||++ ++...++++++++|++|+++ ..++|+|||+...+..+++..+.+++|+||++++.+++. .
T Consensus 1 li~~D~DgTL~~----~~~~~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~~i~~nGa~i~~~~~~---~ 73 (204)
T TIGR01484 1 LLFFDLDGTLLD----PNAHELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLPLPLIAENGALIFYPGEI---L 73 (204)
T ss_pred CEEEeCcCCCcC----CCCCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCCCCEEECCCcEEEECCEE---E
Confidence 589999999997 22257899999999999998 479999999999999998754577999999999875443 1
Q ss_pred cCccccccCCCCCCcccccccccCchHHHHHHHHHHHHHhccCceEEEecCceEEEEcCCC
Q 036329 169 EGKYHTLVPGKKGNEVLFQPAKKFLPAIQEIIKELEEETKKIQGARIEDNRFCISVHFRQV 229 (258)
Q Consensus 169 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~r~pGs~VE~K~~sla~HYR~a 229 (258)
|... .....+.+.+.+++...+..+.+.++|..+|.|.+++++||+..
T Consensus 74 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 121 (204)
T TIGR01484 74 YIEP-------------SDVFEEILGIKEEIGAELKSLSEHYVGTFIEDKAIAVAIHYVGA 121 (204)
T ss_pred EEcc-------------cccHHHHHHhhhhcCceeeeeccccccceeecccceeeEEEecc
Confidence 2100 00001112222455556666667889999999999999999986
No 14
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=99.02 E-value=3.3e-13 Score=137.18 Aligned_cols=197 Identities=29% Similarity=0.329 Sum_probs=151.9
Q ss_pred Cchhhhhhh-hhCCCCCccHHHHHHHhccCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhCCEEEEecCChh
Q 036329 59 SDASYNSWM-VEHPSALDSFDRMIKAAKGKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYFPTAIVSGRSRE 137 (258)
Q Consensus 59 ~~~~~~~w~-~~~p~~l~~~~~i~~~~~~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~~V~IvSGR~~~ 137 (258)
++...+.|| ..+++.+++++.+......+..|.++|+||||.++..+|..++++..++.+..+.++..+.+++|||++.
T Consensus 159 r~~~~~~~ig~flhspfpssEi~r~lp~r~eIl~gll~~~~i~f~t~d~arhFls~c~R~l~~~~~s~~~~~~v~~rgr~ 238 (732)
T KOG1050|consen 159 RERFNSAKIGFFLHSPFPSSEIYRCLPVRKEILRGLLYDDLLGFHTDDYARHFLSTCSRLLGLEVASKFPTAGVSGRGRD 238 (732)
T ss_pred hcccccceEEEeccCCCChHHHHHhcccHHHHHHhhhccCccccccccHHHHHHHHHHHHHHhhhhccCCcceEEeccce
Confidence 444577899 7899999999999999899999999999999999999999999999999988888888788899999977
Q ss_pred h----------HHHHhcccCceEEccCCccccCCCCCCc--cccCccccccCCCC-CCcccccccccCchHHHHHHHHHH
Q 036329 138 K----------VKEFVELSNVYYAGSHGMDIQAPPRPVK--ACEGKYHTLVPGKK-GNEVLFQPAKKFLPAIQEIIKELE 204 (258)
Q Consensus 138 ~----------l~~~~~~~~l~lig~hG~~i~~p~g~~~--~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~L~ 204 (258)
. +.+++.+.+++++++||.++..+.+... .. .-.+....+.. ......++..++.+|+++|..+..
T Consensus 239 ~~v~~~pigid~~r~v~~~~~~~~~~~~~ei~~~~~g~klilg-vD~~d~~kg~~~Kl~a~e~~L~~~pe~~~kVvliqi 317 (732)
T KOG1050|consen 239 VSVKALPIGIDVQRFVKLLELPYVGSKGMEIKEPFKGKKLILG-VDRLDSIKGIQLKLLAFEQFLEEYPEWIDKVVLIQI 317 (732)
T ss_pred eeeeecccccchHHhhccccchhHHHHHHHHhhhccCCceEec-ccccccccCchHHHHHHHHHHHhChhhhceEEEEEE
Confidence 7 7888888889999999999998762200 00 00000000000 111234666778888888887777
Q ss_pred HHHhccCceEEEecCceEEEEcCCCChhcHHHHHHHHHHHHhhCCCcEEeCC
Q 036329 205 EETKKIQGARIEDNRFCISVHFRQVREEDYSVLQEKVKAVLRNYPDFDLSEG 256 (258)
Q Consensus 205 ~~~~r~pGs~VE~K~~sla~HYR~a~~~~~~~~~~~~~~~l~~~p~l~l~~G 256 (258)
....+++|..||+.++|+..|||++++++|......+..+...+|.++++.|
T Consensus 318 ~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~l~a~ 369 (732)
T KOG1050|consen 318 ENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLELLAL 369 (732)
T ss_pred ecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHHHhhh
Confidence 7788999999999999999999999999887665555555555665555544
No 15
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=98.99 E-value=1.8e-09 Score=95.30 Aligned_cols=114 Identities=18% Similarity=0.114 Sum_probs=72.7
Q ss_pred EEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhccc----CceEEccCCccccCCCCC
Q 036329 90 AVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVELS----NVYYAGSHGMDIQAPPRP 164 (258)
Q Consensus 90 ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~~~----~l~lig~hG~~i~~p~g~ 164 (258)
+|++|+||||.+ +...+++.. ++|+ +.+. ..++|+|||+...+..+++.. +.++||+||+.++.+...
T Consensus 1 li~~DlDgTLl~-----~~~~~~~~~-~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~~~~~~I~~nGa~i~~~~~~ 73 (236)
T TIGR02471 1 LIITDLDNTLLG-----DDEGLASFV-ELLR-GSGDAVGFGIATGRSVESAKSRYAKLNLPSPDVLIARVGTEIYYGPEL 73 (236)
T ss_pred CeEEeccccccC-----CHHHHHHHH-HHHH-hcCCCceEEEEeCCCHHHHHHHHHhCCCCCCCEEEECCCceEEeCCCC
Confidence 589999999997 223455555 6776 4443 479999999999999987522 235899999998754321
Q ss_pred C-ccccCccccccCCCCCCcccccccccCchHHHHHHHHHHHHHhccCceEEEecCc--eEEEEcCCCCh
Q 036329 165 V-KACEGKYHTLVPGKKGNEVLFQPAKKFLPAIQEIIKELEEETKKIQGARIEDNRF--CISVHFRQVRE 231 (258)
Q Consensus 165 ~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~r~pGs~VE~K~~--sla~HYR~a~~ 231 (258)
. ...|.. ... . .|. ...+.......||..+|.+.. .+.+||+..++
T Consensus 74 ~~~~~~~~--------------~~~-~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 122 (236)
T TIGR02471 74 QPDRFWQK--------------HID-H---DWR---RQAVVEALADIPGLTLQDDQEQGPFKISYLLDPE 122 (236)
T ss_pred CCChhHHH--------------HHh-c---CCC---HHHHHHHHhcCCCcEeCChhcCCCeeEEEEECcc
Confidence 0 111210 000 0 111 112345556789999998873 58889987654
No 16
>PRK10976 putative hydrolase; Provisional
Probab=98.99 E-value=1.2e-09 Score=97.70 Aligned_cols=70 Identities=19% Similarity=0.193 Sum_probs=57.8
Q ss_pred EEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhC-CEEEEecCChhhHHHHhccc--CceEEccCCccccCCCC
Q 036329 89 IAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYF-PTAIVSGRSREKVKEFVELS--NVYYAGSHGMDIQAPPR 163 (258)
Q Consensus 89 ~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~-~V~IvSGR~~~~l~~~~~~~--~l~lig~hG~~i~~p~g 163 (258)
+++++|+||||... ...++++++++|++|.+.. .|+|+|||+...+..++... ..++||+||+.+..+.+
T Consensus 3 kli~~DlDGTLl~~-----~~~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~~~ 75 (266)
T PRK10976 3 QVVASDLDGTLLSP-----DHTLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIKSYMITSNGARVHDTDG 75 (266)
T ss_pred eEEEEeCCCCCcCC-----CCcCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCCeEEEcCCcEEECCCC
Confidence 68999999999972 3468999999999999884 79999999999988776522 23589999999986544
No 17
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=98.97 E-value=9.8e-10 Score=95.77 Aligned_cols=69 Identities=20% Similarity=0.220 Sum_probs=56.1
Q ss_pred CEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhccc--CceEEccCCccccCC
Q 036329 88 KIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVELS--NVYYAGSHGMDIQAP 161 (258)
Q Consensus 88 ~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~~~--~l~lig~hG~~i~~p 161 (258)
.++||+|+||||+. ....++++++++|++|.+. ..|+|+|||+...+..++... ..++|++||+.+..+
T Consensus 3 ~kli~~DlDGTLl~-----~~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~ 74 (230)
T PRK01158 3 IKAIAIDIDGTITD-----KDRRLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSGPVIAENGGVISVG 74 (230)
T ss_pred eeEEEEecCCCcCC-----CCCccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCcEEEecCeEEEEc
Confidence 36999999999996 2346899999999999987 479999999999887765321 235899999998865
No 18
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.96 E-value=4.3e-09 Score=90.73 Aligned_cols=68 Identities=29% Similarity=0.433 Sum_probs=56.8
Q ss_pred EEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhcccC--ceEEccCCccccCCCC
Q 036329 91 VFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVELSN--VYYAGSHGMDIQAPPR 163 (258)
Q Consensus 91 l~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~~~~--l~lig~hG~~i~~p~g 163 (258)
||+|+||||++ ....++++++++|++|.+. ..++|+|||+...+..+++..+ .++|++||+.+..+.+
T Consensus 1 i~~DlDGTLl~-----~~~~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~~~~I~~nGa~i~~~~~ 71 (254)
T PF08282_consen 1 IFSDLDGTLLN-----SDGKISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGIDDYFICSNGALIDDPKG 71 (254)
T ss_dssp EEEECCTTTCS-----TTSSSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHCSEEEEGGGTEEEETTT
T ss_pred cEEEECCceec-----CCCeeCHHHHHHHHhhcccceEEEEEccCcccccccccccccchhhhcccccceeeeccc
Confidence 68999999997 2345999999999999987 4799999999999999887433 4799999999944444
No 19
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=98.94 E-value=1.9e-09 Score=96.85 Aligned_cols=70 Identities=13% Similarity=0.205 Sum_probs=57.9
Q ss_pred EEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhC-CEEEEecCChhhHHHHhccc--CceEEccCCccccCCCC
Q 036329 89 IAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYF-PTAIVSGRSREKVKEFVELS--NVYYAGSHGMDIQAPPR 163 (258)
Q Consensus 89 ~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~-~V~IvSGR~~~~l~~~~~~~--~l~lig~hG~~i~~p~g 163 (258)
++|++|+||||... ...++++++++|++|.+.. .|+|+|||+...+..++... ..++||+||+.+..+.+
T Consensus 3 kli~~DlDGTLl~~-----~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~I~~~~~ 75 (272)
T PRK15126 3 RLAAFDMDGTLLMP-----DHHLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLDAYLITGNGTRVHSLEG 75 (272)
T ss_pred cEEEEeCCCcCcCC-----CCcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCcEEecCCcEEEcCCC
Confidence 58999999999972 3469999999999999884 79999999999988876522 23589999999986544
No 20
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=98.94 E-value=1.7e-09 Score=96.67 Aligned_cols=69 Identities=19% Similarity=0.295 Sum_probs=57.2
Q ss_pred CEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc---cc--CceEEccCCccccCC
Q 036329 88 KIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE---LS--NVYYAGSHGMDIQAP 161 (258)
Q Consensus 88 ~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~---~~--~l~lig~hG~~i~~p 161 (258)
.++|++|+||||... ...++++++++|++|.+. ..|+|+|||+...+..++. +. ..++|++||+.+..+
T Consensus 3 ~kli~~DlDGTLl~~-----~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~I~~NGa~i~~~ 77 (270)
T PRK10513 3 IKLIAIDMDGTLLLP-----DHTISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHMEQPGDYCITNNGALVQKA 77 (270)
T ss_pred eEEEEEecCCcCcCC-----CCccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCCCCCCeEEEcCCeEEEEC
Confidence 479999999999972 357899999999999998 4799999999999877664 32 236899999999853
No 21
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=98.94 E-value=1.7e-09 Score=94.05 Aligned_cols=70 Identities=23% Similarity=0.287 Sum_probs=57.6
Q ss_pred EEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhccc--CceEEccCCccccCCCC
Q 036329 89 IAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVELS--NVYYAGSHGMDIQAPPR 163 (258)
Q Consensus 89 ~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~~~--~l~lig~hG~~i~~p~g 163 (258)
++||+|+||||+. ....+++++.++|++|++. ..|+|+|||+...+..++..- ..++|++||+.+..+.+
T Consensus 2 k~v~~DlDGTLl~-----~~~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~~~i~~NGa~i~~~~~ 74 (215)
T TIGR01487 2 KLVAIDIDGTLTE-----PNRMISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSGPVVAENGGVIFYNKE 74 (215)
T ss_pred cEEEEecCCCcCC-----CCcccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCCcEEEccCcEEEeCCC
Confidence 5899999999996 2446999999999999988 479999999999988876522 22589999999987543
No 22
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=98.93 E-value=2e-09 Score=95.93 Aligned_cols=69 Identities=20% Similarity=0.226 Sum_probs=57.0
Q ss_pred CEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhccc--CceEEccCCccccCC
Q 036329 88 KIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVELS--NVYYAGSHGMDIQAP 161 (258)
Q Consensus 88 ~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~~~--~l~lig~hG~~i~~p 161 (258)
.++|++|+||||... ...++++++++|++|.+. ..|+|+|||....+..++... ..++||+||+.+...
T Consensus 3 ~kli~~DlDGTLl~~-----~~~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~d~ 74 (272)
T PRK10530 3 YRVIALDLDGTLLTP-----KKTILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALDTPAICCNGTYLYDY 74 (272)
T ss_pred ccEEEEeCCCceECC-----CCccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCCCEEEcCCcEEEec
Confidence 469999999999962 346899999999999998 479999999999888776522 235899999999864
No 23
>PLN02423 phosphomannomutase
Probab=98.93 E-value=2.4e-09 Score=96.00 Aligned_cols=70 Identities=23% Similarity=0.342 Sum_probs=57.4
Q ss_pred cCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhCCEEEEecCChhhHHHHhccc---C-ceEEccCCccccC
Q 036329 86 GKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYFPTAIVSGRSREKVKEFVELS---N-VYYAGSHGMDIQA 160 (258)
Q Consensus 86 ~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~~V~IvSGR~~~~l~~~~~~~---~-l~lig~hG~~i~~ 160 (258)
..++++|||+||||+.. ...++++++++|++|.+...++|+|||+...+...++.. . .+++++||+.+..
T Consensus 5 ~~~~i~~~D~DGTLl~~-----~~~i~~~~~~ai~~l~~~i~fviaTGR~~~~~~~~~~~~~~~~~~~~I~~NGa~i~~ 78 (245)
T PLN02423 5 KPGVIALFDVDGTLTAP-----RKEATPEMLEFMKELRKVVTVGVVGGSDLSKISEQLGKTVINDYDYVFSENGLVAHK 78 (245)
T ss_pred ccceEEEEeccCCCcCC-----CCcCCHHHHHHHHHHHhCCEEEEECCcCHHHHHHHhcccccccCCEEEECCceEEEe
Confidence 34567779999999962 346889999999999987779999999999998877743 1 3689999999884
No 24
>PTZ00174 phosphomannomutase; Provisional
Probab=98.92 E-value=2.7e-09 Score=95.34 Aligned_cols=69 Identities=26% Similarity=0.419 Sum_probs=58.6
Q ss_pred CCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhccc---C-ceEEccCCccccC
Q 036329 87 KKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVELS---N-VYYAGSHGMDIQA 160 (258)
Q Consensus 87 k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~~~---~-l~lig~hG~~i~~ 160 (258)
+.++|++|+||||.. +...+++.++++|++|.+. ..|+|+|||+...+...++.. . .++|+.||+.++.
T Consensus 4 ~~klia~DlDGTLL~-----~~~~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~~~~~~~~~~~I~~NGa~I~~ 77 (247)
T PTZ00174 4 KKTILLFDVDGTLTK-----PRNPITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLGEDVLEDFDYVFSENGLVAYK 77 (247)
T ss_pred CCeEEEEECcCCCcC-----CCCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhhhhhcccCeEEeCCceEEEE
Confidence 468999999999996 3457899999999999998 479999999999999888732 2 2579999999985
No 25
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.92 E-value=2.7e-09 Score=96.36 Aligned_cols=71 Identities=17% Similarity=0.265 Sum_probs=58.8
Q ss_pred CCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc---ccCceEEccCCccccCCC
Q 036329 87 KKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE---LSNVYYAGSHGMDIQAPP 162 (258)
Q Consensus 87 k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~---~~~l~lig~hG~~i~~p~ 162 (258)
..++||+|+||||+.. ...+++.++++|++|.+. .+++|+|||+...+..++. +.+.++||+||+.+..+.
T Consensus 6 ~~~lI~~DlDGTLL~~-----~~~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~~~~~I~~NGa~I~~~~ 80 (271)
T PRK03669 6 DPLLIFTDLDGTLLDS-----HTYDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQGLPLIAENGAVIQLDE 80 (271)
T ss_pred CCeEEEEeCccCCcCC-----CCcCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCCCCcEEEeCCCEEEecC
Confidence 5789999999999962 346789999999999987 5799999999999887765 333469999999998653
No 26
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=98.90 E-value=3.1e-09 Score=94.56 Aligned_cols=69 Identities=19% Similarity=0.332 Sum_probs=57.3
Q ss_pred EEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhccc--CceEEccCCccccCCCC
Q 036329 90 AVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVELS--NVYYAGSHGMDIQAPPR 163 (258)
Q Consensus 90 ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~~~--~l~lig~hG~~i~~p~g 163 (258)
+|++|+||||... ...++++++++|++|.+. ..++|+|||+...+..++... ..++|++||+.+....+
T Consensus 1 li~~DlDGTLl~~-----~~~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~~~I~~NGa~i~~~~~ 72 (256)
T TIGR00099 1 LIFIDLDGTLLND-----DHTISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLDTPFITANGAAVIDDQG 72 (256)
T ss_pred CEEEeCCCCCCCC-----CCccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCCCCEEEcCCcEEECCCC
Confidence 5899999999972 347899999999999998 479999999999988877522 23689999999987644
No 27
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=98.89 E-value=3e-09 Score=95.06 Aligned_cols=70 Identities=20% Similarity=0.162 Sum_probs=59.0
Q ss_pred CCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhcccC--ceEEccCCccccCC
Q 036329 87 KKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVELSN--VYYAGSHGMDIQAP 161 (258)
Q Consensus 87 k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~~~~--l~lig~hG~~i~~p 161 (258)
..++|++|+||||+.. ...+++.++++|+++.+. ..|+|+|||+...+..++..-+ .++|++||+.+..+
T Consensus 2 ~~kli~~DlDGTLl~~-----~~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~ 74 (264)
T COG0561 2 MIKLLAFDLDGTLLDS-----NKTISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDGPLITFNGALIYNG 74 (264)
T ss_pred CeeEEEEcCCCCccCC-----CCccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCccEEEeCCeEEecC
Confidence 3579999999999983 345999999999999887 5799999999999988875222 26999999999987
No 28
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=98.83 E-value=6.1e-09 Score=90.31 Aligned_cols=67 Identities=19% Similarity=0.273 Sum_probs=55.0
Q ss_pred EEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhC-CEEEEecCChhhHHHHhc-cc-CceEEccCCccccCCC
Q 036329 91 VFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYF-PTAIVSGRSREKVKEFVE-LS-NVYYAGSHGMDIQAPP 162 (258)
Q Consensus 91 l~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~-~V~IvSGR~~~~l~~~~~-~~-~l~lig~hG~~i~~p~ 162 (258)
|++|+||||+.. ...++++++++|++|++.. .++|+|||+...+..++. +. ..++|++||+.+...+
T Consensus 1 i~~DlDGTLl~~-----~~~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~~~~ 70 (225)
T TIGR01482 1 IASDIDGTLTDP-----NRAINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTPDPVIAENGGEISYNE 70 (225)
T ss_pred CeEeccCccCCC-----CcccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCeEEEecCcEEEeCC
Confidence 589999999962 3468999999999999884 799999999998877664 22 3468999999988654
No 29
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=98.82 E-value=2.6e-08 Score=88.78 Aligned_cols=138 Identities=15% Similarity=0.130 Sum_probs=85.4
Q ss_pred CEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhC-CEEEEecCChhhHHHH---hccc-CceEEccCCccccCCC
Q 036329 88 KIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYF-PTAIVSGRSREKVKEF---VELS-NVYYAGSHGMDIQAPP 162 (258)
Q Consensus 88 ~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~-~V~IvSGR~~~~l~~~---~~~~-~l~lig~hG~~i~~p~ 162 (258)
+.+|+.|+||||++..+ . ...+++++.+.++++.+.. .++++|||+...+.++ +++. +-++|++||+.|..++
T Consensus 1 ~~li~tDlDGTLl~~~~-~-~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~p~~~I~~NGa~I~~~~ 78 (249)
T TIGR01485 1 RLLLVSDLDNTLVDHTD-G-DNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLTPDIWVTSVGSEIYYGG 78 (249)
T ss_pred CeEEEEcCCCcCcCCCC-C-ChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCCCCEEEEcCCceEEeCC
Confidence 46899999999997431 1 3567799999999999875 7999999999998887 4432 2257889999998753
Q ss_pred CC-CccccCccccccCCCCCCcccccccccCchHHHHHHHHHHHHHhccCceEEEecCceEEEEcCCCChhcHHHHHHHH
Q 036329 163 RP-VKACEGKYHTLVPGKKGNEVLFQPAKKFLPAIQEIIKELEEETKKIQGARIEDNRFCISVHFRQVREEDYSVLQEKV 241 (258)
Q Consensus 163 g~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~r~pGs~VE~K~~sla~HYR~a~~~~~~~~~~~~ 241 (258)
.. ....|..+ . ...+. .+.+..++..+....+....+.+.+.+++++.. +....+...+
T Consensus 79 ~~~~~~~~~~~--------------~-~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~---~~~~~~~~~l 138 (249)
T TIGR01485 79 AEVPDQHWAEY--------------L-SEKWQ--RDIVVAITDKFEELKPQPDLEQRPHKVSFFLDP---EAAPEVIKQL 138 (249)
T ss_pred CCcCCHHHHHH--------------H-hcccC--HHHHHHHHhcCcccccCCccccCCeeEEEEech---hhhhHHHHHH
Confidence 21 11123210 0 01111 133444444443444566667778888888642 2222234445
Q ss_pred HHHHhh
Q 036329 242 KAVLRN 247 (258)
Q Consensus 242 ~~~l~~ 247 (258)
...+..
T Consensus 139 ~~~l~~ 144 (249)
T TIGR01485 139 TEMLKE 144 (249)
T ss_pred HHHHHh
Confidence 555544
No 30
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=98.80 E-value=9.9e-09 Score=89.30 Aligned_cols=68 Identities=19% Similarity=0.298 Sum_probs=54.1
Q ss_pred EEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc---ccCceEEccCCccccCCC
Q 036329 90 AVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE---LSNVYYAGSHGMDIQAPP 162 (258)
Q Consensus 90 ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~---~~~l~lig~hG~~i~~p~ 162 (258)
+|++|+||||+.. + ..+++.++++|++|.+. .+|+|+|||+...+..++. +...++||+||+.+..+.
T Consensus 1 ~i~~DlDGTLL~~----~-~~~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~~~~~I~~NGa~i~~~~ 72 (221)
T TIGR02463 1 WVFSDLDGTLLDS----H-SYDWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLTGDPYIAENGAAIHLEE 72 (221)
T ss_pred CEEEeCCCCCcCC----C-CCCcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCCCcEEEeCCcEEEcCc
Confidence 5899999999962 2 23445599999999887 4899999999999888765 222469999999998753
No 31
>PLN02887 hydrolase family protein
Probab=98.76 E-value=1.7e-08 Score=101.04 Aligned_cols=79 Identities=22% Similarity=0.248 Sum_probs=63.1
Q ss_pred HHHHhccCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc---ccC-c------
Q 036329 80 MIKAAKGKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE---LSN-V------ 148 (258)
Q Consensus 80 i~~~~~~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~---~~~-l------ 148 (258)
.++.|+.+.++|++|+||||... ...++++++++|++|.+. ..|+|+|||+...+..++. +.. .
T Consensus 300 ~~~~~~~~iKLIa~DLDGTLLn~-----d~~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~~~~~~I~~~ 374 (580)
T PLN02887 300 SLRFYKPKFSYIFCDMDGTLLNS-----KSQISETNAKALKEALSRGVKVVIATGKARPAVIDILKMVDLAGKDGIISES 374 (580)
T ss_pred chhhhccCccEEEEeCCCCCCCC-----CCccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcccccceEeec
Confidence 56778889999999999999962 457999999999999998 4799999999999877654 221 1
Q ss_pred -eEEccCCccccCCCC
Q 036329 149 -YYAGSHGMDIQAPPR 163 (258)
Q Consensus 149 -~lig~hG~~i~~p~g 163 (258)
++|+.||+.+....+
T Consensus 375 ~p~I~~NGA~I~d~~g 390 (580)
T PLN02887 375 SPGVFLQGLLVYGRQG 390 (580)
T ss_pred ccEEeecCeEEEECCC
Confidence 355679999875444
No 32
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.74 E-value=1.7e-08 Score=90.23 Aligned_cols=69 Identities=16% Similarity=0.219 Sum_probs=54.4
Q ss_pred EEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhcccC--ceEEccCCccccCCCC
Q 036329 90 AVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVELSN--VYYAGSHGMDIQAPPR 163 (258)
Q Consensus 90 ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~~~~--l~lig~hG~~i~~p~g 163 (258)
+||+|+||||+... ..+.+.++++|++|.+. .+|+|+|||+...+..++...+ .++||+||+.+..+++
T Consensus 1 li~~DlDGTll~~~-----~~~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~~~~I~~NGa~i~~~~~ 72 (256)
T TIGR01486 1 WIFTDLDGTLLDPH-----GYDWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLEDPFIVENGGAIYGPRG 72 (256)
T ss_pred CEEEcCCCCCcCCC-----CcCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCCcEEEcCCeEEEeCCC
Confidence 58999999999732 21334689999999987 4799999999999888775322 4699999999987654
No 33
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.73 E-value=2.4e-08 Score=92.26 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=58.0
Q ss_pred CEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhccc--CceEEccCCccccCCCC
Q 036329 88 KIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVELS--NVYYAGSHGMDIQAPPR 163 (258)
Q Consensus 88 ~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~~~--~l~lig~hG~~i~~p~g 163 (258)
.++||+|+||||.+. ....++.++++|++|.+. .+|+++|||+...+..++..- ..++|++||+.|..|.+
T Consensus 1 ~KLIftDLDGTLLd~-----~~~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~p~I~eNGA~I~~p~~ 74 (302)
T PRK12702 1 MRLVLSSLDGSLLDL-----EFNSYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLEHPFICEDGSAIYVPEH 74 (302)
T ss_pred CcEEEEeCCCCCcCC-----CCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEEeCCcEEEEccc
Confidence 368999999999973 335678899999999988 579999999999988776522 23699999999997754
No 34
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.72 E-value=2.3e-08 Score=88.55 Aligned_cols=67 Identities=28% Similarity=0.449 Sum_probs=54.0
Q ss_pred EEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhcccC--ceEEccCCccccCCC
Q 036329 90 AVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVELSN--VYYAGSHGMDIQAPP 162 (258)
Q Consensus 90 ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~~~~--l~lig~hG~~i~~p~ 162 (258)
++|+|+||||... ..++++++++|++|.+. .+++++|||+...+..++...+ .++|++||+.+..+.
T Consensus 1 li~~DlDGTLl~~------~~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~~~~I~~NGa~I~~~~ 70 (225)
T TIGR02461 1 VIFTDLDGTLLPP------GYEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVEPPFIVENGGAIFIPR 70 (225)
T ss_pred CEEEeCCCCCcCC------CCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCCcEEEcCCcEEEecC
Confidence 5899999999972 12456799999999987 4799999999999887765222 268999999998764
No 35
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.68 E-value=3.9e-08 Score=88.87 Aligned_cols=70 Identities=20% Similarity=0.326 Sum_probs=56.7
Q ss_pred CEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhcccC--ceEEccCCccccCCC
Q 036329 88 KIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVELSN--VYYAGSHGMDIQAPP 162 (258)
Q Consensus 88 ~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~~~~--l~lig~hG~~i~~p~ 162 (258)
.++||+|+||||+.. ...+++.++++|++|.+. ..++|+|||+...+...+...+ .+++++||+.+..+.
T Consensus 4 ~kli~~DlDGTLl~~-----~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~~~~i~~nGa~i~~~~ 76 (273)
T PRK00192 4 KLLVFTDLDGTLLDH-----HTYSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLEDPFIVENGAAIYIPK 76 (273)
T ss_pred ceEEEEcCcccCcCC-----CCcCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCCEEEEcCcEEEecc
Confidence 469999999999962 235678899999999987 4799999999999887765322 358999999998654
No 36
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=98.57 E-value=1.1e-07 Score=96.27 Aligned_cols=73 Identities=19% Similarity=0.199 Sum_probs=59.2
Q ss_pred cCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhccc--CceEEccCCccccCCC
Q 036329 86 GKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVELS--NVYYAGSHGMDIQAPP 162 (258)
Q Consensus 86 ~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~~~--~l~lig~hG~~i~~p~ 162 (258)
-++++||+|+||||+.. ...+++.++++|++|.+. ..++|+|||+...+..++... ..++|++||+.+..+.
T Consensus 414 ~~~KLIfsDLDGTLLd~-----d~~i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl~~~~I~eNGA~I~~~~ 488 (694)
T PRK14502 414 QFKKIVYTDLDGTLLNP-----LTYSYSTALDALRLLKDKELPLVFCSAKTMGEQDLYRNELGIKDPFITENGGAIFIPK 488 (694)
T ss_pred ceeeEEEEECcCCCcCC-----CCccCHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCCCeEEEcCCCEEEECC
Confidence 35789999999999973 224567889999999987 479999999999988776522 2369999999999876
Q ss_pred C
Q 036329 163 R 163 (258)
Q Consensus 163 g 163 (258)
+
T Consensus 489 ~ 489 (694)
T PRK14502 489 D 489 (694)
T ss_pred C
Confidence 5
No 37
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=98.38 E-value=1.6e-07 Score=84.35 Aligned_cols=128 Identities=23% Similarity=0.209 Sum_probs=71.6
Q ss_pred CEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHh---h--CCEEEEecCChhhHHHHhc---c-cCceEEccCCccc
Q 036329 88 KIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAK---Y--FPTAIVSGRSREKVKEFVE---L-SNVYYAGSHGMDI 158 (258)
Q Consensus 88 ~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~---~--~~V~IvSGR~~~~l~~~~~---~-~~l~lig~hG~~i 158 (258)
+++|+.|+||||++ . . +.....|.++-+ . ..++++|||+.+.+.+.+. + .+-++|+++|.+|
T Consensus 2 ~~ll~sDlD~Tl~~--~---~----~~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~~l~~Pd~~I~svGt~I 72 (247)
T PF05116_consen 2 PRLLASDLDGTLID--G---D----DEALARLEELLEQQARPEILFVYVTGRSLESVLRLLREYNLPQPDYIITSVGTEI 72 (247)
T ss_dssp SEEEEEETBTTTBH--C---H----HHHHHHHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHHCT-EE-SEEEETTTTEE
T ss_pred CEEEEEECCCCCcC--C---C----HHHHHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHhCCCCCCCEEEecCCeEE
Confidence 67999999999992 0 1 233344444333 2 2489999999999988775 2 2346999999999
Q ss_pred cCCC-CCCccccCccccccCCCCCCcccccccccCchHHHHHHHHHHHHHhccCceEE----EecCceEEEEcCCCChhc
Q 036329 159 QAPP-RPVKACEGKYHTLVPGKKGNEVLFQPAKKFLPAIQEIIKELEEETKKIQGARI----EDNRFCISVHFRQVREED 233 (258)
Q Consensus 159 ~~p~-g~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~r~pGs~V----E~K~~sla~HYR~a~~~~ 233 (258)
.... ......|..+ ....+. .+.+.+ .+.+.++... +.+.+.+++.++.....
T Consensus 73 ~~~~~~~~d~~w~~~---------------i~~~w~--~~~v~~----~l~~~~~l~~q~~~~q~~~k~sy~~~~~~~~- 130 (247)
T PF05116_consen 73 YYGENWQPDEEWQAH---------------IDERWD--RERVEE----ILAELPGLRPQPESEQRPFKISYYVDPDDSA- 130 (247)
T ss_dssp EESSTTEE-HHHHHH---------------HHTT----HHHHHH----HHHCHCCEEEGGCCCGCCTCECEEEETTSHC-
T ss_pred EEcCCCcChHHHHHH---------------HHhcCC--hHHHHH----HHHHhhCcccCCccccCCeeEEEEEecccch-
Confidence 8722 1112234321 011111 133333 4445555443 44567888888755433
Q ss_pred HHHHHHHHHHHHhhC
Q 036329 234 YSVLQEKVKAVLRNY 248 (258)
Q Consensus 234 ~~~~~~~~~~~l~~~ 248 (258)
.+.+.++..++..
T Consensus 131 --~~~~~i~~~l~~~ 143 (247)
T PF05116_consen 131 --DILEEIRARLRQR 143 (247)
T ss_dssp --HHHHHHHHHHHCC
T ss_pred --hHHHHHHHHHHHc
Confidence 3345566666653
No 38
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.28 E-value=1.9e-06 Score=72.65 Aligned_cols=70 Identities=13% Similarity=0.131 Sum_probs=51.2
Q ss_pred EEEEecCCccCCCCC------CCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHH---HHhc--------ccCceEE
Q 036329 90 AVFLDYDGTLSPIVD------DPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVK---EFVE--------LSNVYYA 151 (258)
Q Consensus 90 ll~lD~DGTL~~~~~------~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~---~~~~--------~~~l~li 151 (258)
++++|+||||+.... -.....+++.+.+++++|++. .+++++|||+...+. .++. ++.-+++
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~~~~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li 80 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVL 80 (157)
T ss_pred CEEEecCCCCcccccccccccccccCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEE
Confidence 479999999996320 001147899999999999998 479999999988764 4432 3334678
Q ss_pred ccCCcccc
Q 036329 152 GSHGMDIQ 159 (258)
Q Consensus 152 g~hG~~i~ 159 (258)
+.+|..+.
T Consensus 81 ~~~g~~~~ 88 (157)
T smart00775 81 LSPDRLFA 88 (157)
T ss_pred EcCCcchh
Confidence 88887764
No 39
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=98.27 E-value=1.3e-05 Score=70.54 Aligned_cols=126 Identities=21% Similarity=0.263 Sum_probs=83.7
Q ss_pred cCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhCCEEEEecCChhhHHHHhccc---C-ceEEccCCccccCC
Q 036329 86 GKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYFPTAIVSGRSREKVKEFVELS---N-VYYAGSHGMDIQAP 161 (258)
Q Consensus 86 ~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~~V~IvSGR~~~~l~~~~~~~---~-l~lig~hG~~i~~p 161 (258)
-.+.+++||.||||++ ....+++++.+.|++|.....+.+|-|.+++.+.+.+|.+ . -+...|||+.-...
T Consensus 9 ~~~~l~lfdvdgtLt~-----~r~~~~~e~~~~l~~lr~~v~ig~VggsDl~k~~eqlG~~Vl~~fDY~F~ENGl~~yk~ 83 (252)
T KOG3189|consen 9 DEETLCLFDVDGTLTP-----PRQKVTPEMLEFLQKLRKKVTIGFVGGSDLSKQQEQLGDNVLEEFDYVFSENGLVAYKG 83 (252)
T ss_pred CCceEEEEecCCcccc-----ccccCCHHHHHHHHHHhhheEEEEeecHHHHHHHHHhchhHHhhhcccccCCCeeEeeC
Confidence 4567999999999997 3678899999999999988889999999999999998732 2 25789999876553
Q ss_pred CCCCccccCccccccCCCCCCcccccccccCchHHHHHHH-HHHHHHh----ccCceEEEecCceEEEEc--CCCChhc
Q 036329 162 PRPVKACEGKYHTLVPGKKGNEVLFQPAKKFLPAIQEIIK-ELEEETK----KIQGARIEDNRFCISVHF--RQVREED 233 (258)
Q Consensus 162 ~g~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~L~~~~~----r~pGs~VE~K~~sla~HY--R~a~~~~ 233 (258)
|...+ .+-+...... ...+++.. .|+|..+ .-.|.+||-+.-.+.+.. |+|..+.
T Consensus 84 -gk~~~-------------~Qsi~~~LGe---e~~q~liNF~LrYlsdidlPiKRGtFiEFRNgMiNvsPIGR~cs~EE 145 (252)
T KOG3189|consen 84 -GKLLS-------------KQSIINHLGE---EKLQELINFCLRYLSDIDLPIKRGTFIEFRNGMINVSPIGRNCSQEE 145 (252)
T ss_pred -Ccchh-------------HHHHHHHHhH---HHHHHHHHHHHHHHHhcCCcccccceEEecCCceeccccccccCHHH
Confidence 32110 0000000111 11222222 2222221 125999999998887774 7887654
No 40
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.21 E-value=2.1e-06 Score=66.42 Aligned_cols=71 Identities=25% Similarity=0.300 Sum_probs=52.8
Q ss_pred EEEEecCCccCCCCCC---CCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhcccCc-----eEEccCCccccC
Q 036329 90 AVFLDYDGTLSPIVDD---PNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVELSNV-----YYAGSHGMDIQA 160 (258)
Q Consensus 90 ll~lD~DGTL~~~~~~---p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~~~~l-----~lig~hG~~i~~ 160 (258)
+++||+||||++.... .....+.+++.+.|++|.+. ..++|+||+....+..++...++ .++++++.....
T Consensus 1 ~~vfD~D~tl~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 80 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAEIEELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIYY 80 (139)
T ss_pred CeEEccCCceEccCccccccccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccchhhhhc
Confidence 4799999999985421 12347789999999999997 57999999999999887753332 356666665443
No 41
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=98.11 E-value=6.2e-06 Score=67.48 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=39.4
Q ss_pred EEEEEecCCccCCCCCCC-CCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHH
Q 036329 89 IAVFLDYDGTLSPIVDDP-NRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVK 140 (258)
Q Consensus 89 ~ll~lD~DGTL~~~~~~p-~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~ 140 (258)
+++++|+||||......+ ....+.++++++|++|.+. ..|+++|||+.....
T Consensus 2 K~i~~DiDGTL~~~~~~~y~~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~ 55 (126)
T TIGR01689 2 KRLVMDLDNTITLTENGDYANVAPILAVIEKLRHYKALGFEIVISSSRNMRTYE 55 (126)
T ss_pred CEEEEeCCCCcccCCCCcccccccCHHHHHHHHHHHHCCCEEEEECCCCchhhh
Confidence 489999999998642211 2245789999999999776 579999999887543
No 42
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.06 E-value=7.4e-06 Score=73.06 Aligned_cols=72 Identities=19% Similarity=0.288 Sum_probs=56.9
Q ss_pred cCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHH---HhcccCceEEccCCccccCC
Q 036329 86 GKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKE---FVELSNVYYAGSHGMDIQAP 161 (258)
Q Consensus 86 ~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~---~~~~~~l~lig~hG~~i~~p 161 (258)
....+||+|+||||++..-+| +.+...|.+|.+. ++|+.+|..+..++.. -+++++..+++|||+-|..|
T Consensus 5 ~~~~lIFtDlD~TLl~~~ye~------~pA~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~~~p~iaEnG~aI~~p 78 (274)
T COG3769 5 QMPLLIFTDLDGTLLPHSYEW------QPAAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQGLPLIAENGAAIYLP 78 (274)
T ss_pred ccceEEEEcccCcccCCCCCC------CccchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCCCceeecCCceEEec
Confidence 356899999999999944444 2344567778776 5899999999988755 46778888999999999988
Q ss_pred CC
Q 036329 162 PR 163 (258)
Q Consensus 162 ~g 163 (258)
.|
T Consensus 79 ~~ 80 (274)
T COG3769 79 KG 80 (274)
T ss_pred cc
Confidence 76
No 43
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=97.89 E-value=3.1e-05 Score=71.74 Aligned_cols=71 Identities=20% Similarity=0.120 Sum_probs=52.1
Q ss_pred cCCEEEEEecCCccCCCCCCCCCccC-CHHHHHHHHHHHhhC-CEEEEecCChhhHHHHh---cccC-ceEEccCCcccc
Q 036329 86 GKKIAVFLDYDGTLSPIVDDPNRAFM-SDEMRAAVREVAKYF-PTAIVSGRSREKVKEFV---ELSN-VYYAGSHGMDIQ 159 (258)
Q Consensus 86 ~k~~ll~lD~DGTL~~~~~~p~~~~~-~~~~~~aL~~L~~~~-~V~IvSGR~~~~l~~~~---~~~~-l~lig~hG~~i~ 159 (258)
.-..+|+||+||||.... ..+++ +|++.++|++|.+.. .++|+|++....+...+ |+.. +..+.++|...+
T Consensus 124 ~~~kvIvFDLDgTLi~~~---~~v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFdvIIs~Gdv~~ 200 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDE---EPVRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFDIIISGGHKAE 200 (301)
T ss_pred ccceEEEEecCCCCcCCC---CccccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccCEEEECCcccc
Confidence 456799999999999842 22334 499999999999984 79999999888887765 4443 235555665444
No 44
>PLN02382 probable sucrose-phosphatase
Probab=97.83 E-value=3.5e-05 Score=74.41 Aligned_cols=73 Identities=19% Similarity=0.086 Sum_probs=51.2
Q ss_pred cCCEEEEEecCCccCCCCCCCCCccCCHHHHHHH-HHHHhhC-CEEEEecCChhhHHHH---hcc-cCceEEccCCcccc
Q 036329 86 GKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAV-REVAKYF-PTAIVSGRSREKVKEF---VEL-SNVYYAGSHGMDIQ 159 (258)
Q Consensus 86 ~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL-~~L~~~~-~V~IvSGR~~~~l~~~---~~~-~~l~lig~hG~~i~ 159 (258)
+.+.+|+.|+||||++-. +...+++...++| +++.+.. .++++|||+...+.++ +++ .+-.+|++||++|.
T Consensus 7 ~~~~lI~sDLDGTLL~~~---~~~~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~~~~l~~~~~l~~p~~~I~~nGt~I~ 83 (413)
T PLN02382 7 SPRLMIVSDLDHTMVDHH---DPENLSLLRFNALWEAEYRHDSLLVFSTGRSPTLYKELRKEKPLLTPDITIMSVGTEIA 83 (413)
T ss_pred CCCEEEEEcCCCcCcCCC---CccchhHHHHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHhCCCCCCCEEEEcCCcEEE
Confidence 567889999999999732 1235665555555 7766653 6899999997776665 443 23347888999997
Q ss_pred CC
Q 036329 160 AP 161 (258)
Q Consensus 160 ~p 161 (258)
..
T Consensus 84 ~~ 85 (413)
T PLN02382 84 YG 85 (413)
T ss_pred eC
Confidence 53
No 45
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.66 E-value=5.1e-05 Score=60.79 Aligned_cols=56 Identities=32% Similarity=0.462 Sum_probs=42.3
Q ss_pred EEEEEecCCccCCC---CCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCC--------hhhHHHHhc
Q 036329 89 IAVFLDYDGTLSPI---VDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRS--------REKVKEFVE 144 (258)
Q Consensus 89 ~ll~lD~DGTL~~~---~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~--------~~~l~~~~~ 144 (258)
++++||+||||+.. ...-....+.+.++++|+.|.+. .+++|+|++. ...+..++.
T Consensus 1 k~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~ 68 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLE 68 (132)
T ss_pred CEEEEeCCCceecCCCCCCCHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHH
Confidence 47999999999952 11112346789999999999877 5899999998 666666554
No 46
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.66 E-value=0.00011 Score=66.23 Aligned_cols=60 Identities=22% Similarity=0.258 Sum_probs=44.6
Q ss_pred cHHHHHHHhccC-CEEEEEecCCccCCCCC---------CCC--------------------CccCCHHHHHHHHHHHhh
Q 036329 76 SFDRMIKAAKGK-KIAVFLDYDGTLSPIVD---------DPN--------------------RAFMSDEMRAAVREVAKY 125 (258)
Q Consensus 76 ~~~~i~~~~~~k-~~ll~lD~DGTL~~~~~---------~p~--------------------~~~~~~~~~~aL~~L~~~ 125 (258)
|.++|.+...++ +.+|+||+||||+.-.+ .++ ...+-+.+.+.|+.|.+.
T Consensus 50 ~~~~~~~~~~~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~ 129 (237)
T TIGR01672 50 SVAQIENSLEGRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRR 129 (237)
T ss_pred EHHHHHHhcCCCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHC
Confidence 999999999866 45999999999997433 110 112233388889999887
Q ss_pred -CCEEEEecCC
Q 036329 126 -FPTAIVSGRS 135 (258)
Q Consensus 126 -~~V~IvSGR~ 135 (258)
.+++|||+|.
T Consensus 130 G~~i~iVTnr~ 140 (237)
T TIGR01672 130 GDAIFFVTGRT 140 (237)
T ss_pred CCEEEEEeCCC
Confidence 4799999993
No 47
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=97.55 E-value=0.00016 Score=61.36 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=36.1
Q ss_pred CCEEEEEecCCccCCCCC------CCCCcc-CCHHHHHHHHHHHhh-CCEEEEecCC
Q 036329 87 KKIAVFLDYDGTLSPIVD------DPNRAF-MSDEMRAAVREVAKY-FPTAIVSGRS 135 (258)
Q Consensus 87 k~~ll~lD~DGTL~~~~~------~p~~~~-~~~~~~~aL~~L~~~-~~V~IvSGR~ 135 (258)
+.++++||+||||..... +|+..+ +-+++.++|++|.+. .+++|+|..+
T Consensus 12 ~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~ 68 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQS 68 (166)
T ss_pred cCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 357889999999996322 232222 458999999999876 5799999654
No 48
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=97.48 E-value=0.00028 Score=65.56 Aligned_cols=72 Identities=15% Similarity=0.051 Sum_probs=50.2
Q ss_pred cCCEEEEEecCCccCCCCCCCCCccC-CHHHHHHHHHHHhhC-CEEEEecCChhhHHHHhc---ccCc-eEEccCCcccc
Q 036329 86 GKKIAVFLDYDGTLSPIVDDPNRAFM-SDEMRAAVREVAKYF-PTAIVSGRSREKVKEFVE---LSNV-YYAGSHGMDIQ 159 (258)
Q Consensus 86 ~k~~ll~lD~DGTL~~~~~~p~~~~~-~~~~~~aL~~L~~~~-~V~IvSGR~~~~l~~~~~---~~~l-~lig~hG~~i~ 159 (258)
.-..+++||+||||..... ..++ +|.+.++|.+|.+.. .++|+|+.+...+...+. +... ..+.++|....
T Consensus 126 ~~~~~i~~D~D~TL~~~~~---~v~irdp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yFDvII~~g~i~~ 202 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEE---PVRIRDPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYFDIIICGGRKAG 202 (303)
T ss_pred eeccEEEEecCCCccCCCC---ccccCChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccccEEEECCCccc
Confidence 4567999999999998421 2223 699999999999984 799999777777766654 4432 24555554443
Q ss_pred C
Q 036329 160 A 160 (258)
Q Consensus 160 ~ 160 (258)
.
T Consensus 203 k 203 (303)
T PHA03398 203 E 203 (303)
T ss_pred c
Confidence 3
No 49
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=97.47 E-value=0.00021 Score=57.84 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=41.4
Q ss_pred EEEEEecCCccCCCCCCCCCc-------cCCHHHHHHHHHHHhh-CCEEEEecC-ChhhHHHHhc
Q 036329 89 IAVFLDYDGTLSPIVDDPNRA-------FMSDEMRAAVREVAKY-FPTAIVSGR-SREKVKEFVE 144 (258)
Q Consensus 89 ~ll~lD~DGTL~~~~~~p~~~-------~~~~~~~~aL~~L~~~-~~V~IvSGR-~~~~l~~~~~ 144 (258)
++|++|+||||.+........ .+.+++.+.|+.|.+. .+++|+|++ ....+...+.
T Consensus 1 kli~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~ 65 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLK 65 (128)
T ss_pred CEEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHH
Confidence 479999999999863211111 3678999999999887 479999999 6666655554
No 50
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=97.36 E-value=0.00022 Score=59.48 Aligned_cols=54 Identities=24% Similarity=0.335 Sum_probs=38.0
Q ss_pred EEEEEecCCccCC----CCCC---CCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 89 IAVFLDYDGTLSP----IVDD---PNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 89 ~ll~lD~DGTL~~----~~~~---p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
+++|||+||||.. +..+ +..-.+.+. .+|++|.+. ..++|+||+....+...+.
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~--~~i~~Lk~~G~~i~IvTn~~~~~~~~~l~ 63 (154)
T TIGR01670 2 RLLILDVDGVLTDGKIYYTNNGEEIKAFNVRDG--YGIRCALKSGIEVAIITGRKAKLVEDRCK 63 (154)
T ss_pred eEEEEeCceeEEcCeEEECCCCcEEEEEechhH--HHHHHHHHCCCEEEEEECCCCHHHHHHHH
Confidence 5899999999997 1111 111112333 289999887 4799999999888877765
No 51
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.35 E-value=0.00015 Score=61.39 Aligned_cols=47 Identities=32% Similarity=0.477 Sum_probs=38.3
Q ss_pred EEEEEecCCccCC---CCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCC
Q 036329 89 IAVFLDYDGTLSP---IVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRS 135 (258)
Q Consensus 89 ~ll~lD~DGTL~~---~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~ 135 (258)
+++|||.||||.. +...++...+.|.+.++|++|.+. .+++|+|.-+
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~ 52 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYVHEIDNFEFIDGVIDALRELKKMGYALVLVTNQS 52 (176)
T ss_pred CEEEEeCCCCEeCCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 6899999999993 333455667789999999999987 5899999765
No 52
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=97.18 E-value=0.00033 Score=63.22 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=36.7
Q ss_pred EEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhC-CEEEEecCChhh
Q 036329 89 IAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYF-PTAIVSGRSREK 138 (258)
Q Consensus 89 ~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~-~V~IvSGR~~~~ 138 (258)
++++||+||||..-.. ....+.|.+.++|++|.+.. +++++|||+...
T Consensus 2 k~i~~D~DGtl~~~~~--~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~ 50 (257)
T TIGR01458 2 KGVLLDISGVLYISDA--KSGVAVPGSQEAVKRLRGASVKVRFVTNTTKES 50 (257)
T ss_pred CEEEEeCCCeEEeCCC--cccCcCCCHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 4799999999996311 00126679999999999884 799999977664
No 53
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.18 E-value=0.00098 Score=60.04 Aligned_cols=60 Identities=22% Similarity=0.257 Sum_probs=46.3
Q ss_pred cHHHHHHHhccC-CEEEEEecCCccCCCCC-----C----C--------------------CCccCCHHHHHHHHHHHhh
Q 036329 76 SFDRMIKAAKGK-KIAVFLDYDGTLSPIVD-----D----P--------------------NRAFMSDEMRAAVREVAKY 125 (258)
Q Consensus 76 ~~~~i~~~~~~k-~~ll~lD~DGTL~~~~~-----~----p--------------------~~~~~~~~~~~aL~~L~~~ 125 (258)
++++|.+...++ +.++.||+|||++.-.+ . | ..+.+-+.+++.|+.|.+.
T Consensus 50 ~~~~~~~~~~~~~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~ 129 (237)
T PRK11009 50 SVAQIEKSLEGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKR 129 (237)
T ss_pred EHHHhhhhccCCCCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHC
Confidence 999999988866 56999999999994111 0 0 1234566799999999776
Q ss_pred -CCEEEEecCC
Q 036329 126 -FPTAIVSGRS 135 (258)
Q Consensus 126 -~~V~IvSGR~ 135 (258)
.++++||||+
T Consensus 130 G~~I~iVTnR~ 140 (237)
T PRK11009 130 GDSIYFITGRT 140 (237)
T ss_pred CCeEEEEeCCC
Confidence 5799999996
No 54
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=97.07 E-value=0.00081 Score=60.34 Aligned_cols=63 Identities=22% Similarity=0.233 Sum_probs=45.4
Q ss_pred EEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhC-CEEEEec---CChhhHHHHhc---cc--CceEEccCCcc
Q 036329 89 IAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYF-PTAIVSG---RSREKVKEFVE---LS--NVYYAGSHGMD 157 (258)
Q Consensus 89 ~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~-~V~IvSG---R~~~~l~~~~~---~~--~l~lig~hG~~ 157 (258)
++++||+||||..- ...+ +++.++|++|.+.. +++++|| |+...+...+. +. .-.++.++|+.
T Consensus 2 ~~~~~D~DGtl~~~-----~~~i-~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~~~ 73 (249)
T TIGR01457 2 KGYLIDLDGTMYKG-----KERI-PEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASMAT 73 (249)
T ss_pred CEEEEeCCCceEcC-----CeeC-cCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHHHH
Confidence 47999999999972 2233 47899999999884 7999995 88888777654 22 11266666664
No 55
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=97.02 E-value=0.00054 Score=58.67 Aligned_cols=59 Identities=19% Similarity=0.170 Sum_probs=40.1
Q ss_pred CCEEEEEecCCccCCCC--CCCCCccCCHHHH---HHHHHHHhh-CCEEEEecCChhhHHHHhcc
Q 036329 87 KKIAVFLDYDGTLSPIV--DDPNRAFMSDEMR---AAVREVAKY-FPTAIVSGRSREKVKEFVEL 145 (258)
Q Consensus 87 k~~ll~lD~DGTL~~~~--~~p~~~~~~~~~~---~aL~~L~~~-~~V~IvSGR~~~~l~~~~~~ 145 (258)
..++|+||+||||+... -.+....+....+ .+|+.|.+. .+++|+|||....+..++..
T Consensus 20 ~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d~~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~ 84 (183)
T PRK09484 20 NIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRDGYGIRCLLTSGIEVAIITGRKSKLVEDRMTT 84 (183)
T ss_pred CceEEEEcCCeeeecCEEEEcCCCCEEEEEeccchHHHHHHHHCCCEEEEEeCCCcHHHHHHHHH
Confidence 57899999999999731 0011222222222 577788776 57999999999888877653
No 56
>PLN02645 phosphoglycolate phosphatase
Probab=96.97 E-value=0.00094 Score=61.87 Aligned_cols=53 Identities=13% Similarity=0.155 Sum_probs=40.0
Q ss_pred cHHHHHHHhccCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhC-CEEEEecCChhh
Q 036329 76 SFDRMIKAAKGKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYF-PTAIVSGRSREK 138 (258)
Q Consensus 76 ~~~~i~~~~~~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~-~V~IvSGR~~~~ 138 (258)
++.+++. +-.+++||+||||..- ..+.+.+.++|++|.+.. +++++|+|+...
T Consensus 20 ~~~~~~~----~~~~~~~D~DGtl~~~------~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~ 73 (311)
T PLN02645 20 NADELID----SVETFIFDCDGVIWKG------DKLIEGVPETLDMLRSMGKKLVFVTNNSTKS 73 (311)
T ss_pred HHHHHHH----hCCEEEEeCcCCeEeC------CccCcCHHHHHHHHHHCCCEEEEEeCCCCCC
Confidence 4555554 3458999999999862 234588899999999874 799999998433
No 57
>PRK10444 UMP phosphatase; Provisional
Probab=96.93 E-value=0.00081 Score=60.61 Aligned_cols=48 Identities=13% Similarity=0.144 Sum_probs=38.7
Q ss_pred EEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhC-CEEEEecCChhhHHHH
Q 036329 89 IAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYF-PTAIVSGRSREKVKEF 142 (258)
Q Consensus 89 ~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~-~V~IvSGR~~~~l~~~ 142 (258)
++++||+||||..- ..+.|.+.++|++|.+.. +++++|+|+......+
T Consensus 2 ~~v~~DlDGtL~~~------~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~ 50 (248)
T PRK10444 2 KNVICDIDGVLMHD------NVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDL 50 (248)
T ss_pred cEEEEeCCCceEeC------CeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHH
Confidence 47899999999862 256789999999999974 7999999988654443
No 58
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=96.85 E-value=0.00086 Score=56.60 Aligned_cols=43 Identities=35% Similarity=0.565 Sum_probs=31.4
Q ss_pred EEEEecCCccCCC------CCCCCCc-cCCHHHHHHHHHHHhh-CCEEEEe
Q 036329 90 AVFLDYDGTLSPI------VDDPNRA-FMSDEMRAAVREVAKY-FPTAIVS 132 (258)
Q Consensus 90 ll~lD~DGTL~~~------~~~p~~~-~~~~~~~~aL~~L~~~-~~V~IvS 132 (258)
+++||+||||... ..+|++- .+++.+.++|++|.+. +.++|+|
T Consensus 2 ia~fD~DgTLi~~~s~~~f~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvT 52 (159)
T PF08645_consen 2 IAFFDLDGTLIKTKSGKKFPKDPDDWKFFPPGVPEALRELHKKGYKIVIVT 52 (159)
T ss_dssp EEEE-SCTTTEE-STSTTS-SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEE
T ss_pred EEEEeCCCCccCCCCCCcCcCCHHHhhhcchhHHHHHHHHHhcCCeEEEEe
Confidence 6899999999853 2245543 4577899999999887 4799999
No 59
>PRK06769 hypothetical protein; Validated
Probab=96.85 E-value=0.0019 Score=54.83 Aligned_cols=48 Identities=17% Similarity=0.217 Sum_probs=37.8
Q ss_pred CEEEEEecCCccCCCCC--CCCCccCCHHHHHHHHHHHhh-CCEEEEecCC
Q 036329 88 KIAVFLDYDGTLSPIVD--DPNRAFMSDEMRAAVREVAKY-FPTAIVSGRS 135 (258)
Q Consensus 88 ~~ll~lD~DGTL~~~~~--~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~ 135 (258)
-++||||.||||.+... .++...+-|++.+.|++|.+. .+++|+|+..
T Consensus 4 ~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~ 54 (173)
T PRK06769 4 IQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKASLQKLKANHIKIFSFTNQP 54 (173)
T ss_pred CcEEEEeCCCcccCCCCCCCHHHeEECCCHHHHHHHHHHCCCEEEEEECCc
Confidence 46899999999976522 223456789999999999887 5899999865
No 60
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=96.82 E-value=0.0013 Score=54.01 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=36.2
Q ss_pred EEEEecCCccCCCCC-----CCCCccCCHHHHHHHHHHHhh-CCEEEEecCC
Q 036329 90 AVFLDYDGTLSPIVD-----DPNRAFMSDEMRAAVREVAKY-FPTAIVSGRS 135 (258)
Q Consensus 90 ll~lD~DGTL~~~~~-----~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~ 135 (258)
++|||+||||+.-.. .+....+.+++.++|+.|.+. ..++|+|+.+
T Consensus 2 ~~~~d~dgtl~~~~~~~~~~~~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~ 53 (147)
T TIGR01656 2 ALFLDRDGVINEDTVSDYPRSLDDWQLRPGAVPALLTLRAAGYTVVVVTNQS 53 (147)
T ss_pred eEEEeCCCceeccCCcccCCCHHHeEEcCChHHHHHHHHHCCCEEEEEeCCC
Confidence 689999999997543 122335688999999999987 5899999865
No 61
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.77 E-value=0.0026 Score=63.48 Aligned_cols=98 Identities=14% Similarity=0.233 Sum_probs=60.9
Q ss_pred hhhhhCCCCCccHHHHH--H--HhccCCEEEEEecCCccCCCC------CCCCCcc-CCHHHHHHHHHHHhh-CCEEEEe
Q 036329 65 SWMVEHPSALDSFDRMI--K--AAKGKKIAVFLDYDGTLSPIV------DDPNRAF-MSDEMRAAVREVAKY-FPTAIVS 132 (258)
Q Consensus 65 ~w~~~~p~~l~~~~~i~--~--~~~~k~~ll~lD~DGTL~~~~------~~p~~~~-~~~~~~~aL~~L~~~-~~V~IvS 132 (258)
.|....+..-..|+.++ . ...++.+++|||+||||..-. .+|++-. +.+.+.++|++|.++ +.++|+|
T Consensus 141 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvT 220 (526)
T TIGR01663 141 KRDRKGNPGWENLEKLLIFTAAGVKGQEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFT 220 (526)
T ss_pred hhcccCCccccccCceEEEecCCcCccCcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEE
Confidence 67766554433443322 1 123678999999999999632 2333333 579999999999987 5899999
Q ss_pred cCCh------------hhHHHHh---cccCceEEccCCccccCCC
Q 036329 133 GRSR------------EKVKEFV---ELSNVYYAGSHGMDIQAPP 162 (258)
Q Consensus 133 GR~~------------~~l~~~~---~~~~l~lig~hG~~i~~p~ 162 (258)
...- ..+..++ +++-..++|.+....+.|.
T Consensus 221 NQ~gI~~G~~~~~~~~~ki~~iL~~lgipfdviia~~~~~~RKP~ 265 (526)
T TIGR01663 221 NQGGIARGKINADDFKAKIEAIVAKLGVPFQVFIAIGAGFYRKPL 265 (526)
T ss_pred CCcccccCcccHHHHHHHHHHHHHHcCCceEEEEeCCCCCCCCCC
Confidence 6443 2233333 4432246677666666553
No 62
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=96.71 E-value=0.0019 Score=58.69 Aligned_cols=42 Identities=17% Similarity=0.112 Sum_probs=33.3
Q ss_pred EEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhC-CEEEEecCCh
Q 036329 89 IAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYF-PTAIVSGRSR 136 (258)
Q Consensus 89 ~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~-~V~IvSGR~~ 136 (258)
++++||+||||..- ..+-+.+.++|++|.+.. +++++|+|+.
T Consensus 3 ~~~~~D~DGtl~~~------~~~~~ga~e~l~~L~~~g~~~~~~Tnns~ 45 (279)
T TIGR01452 3 QGFIFDCDGVLWLG------ERVVPGAPELLDRLARAGKAALFVTNNST 45 (279)
T ss_pred cEEEEeCCCceEcC------CeeCcCHHHHHHHHHHCCCeEEEEeCCCC
Confidence 47999999999862 224456899999999874 7999999763
No 63
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=96.69 E-value=0.0014 Score=55.42 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=36.2
Q ss_pred EEEEEecCCccCCCCC------CCCCccCCHHHHHHHHHHHhh-CCEEEEecC
Q 036329 89 IAVFLDYDGTLSPIVD------DPNRAFMSDEMRAAVREVAKY-FPTAIVSGR 134 (258)
Q Consensus 89 ~ll~lD~DGTL~~~~~------~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR 134 (258)
+++|||.||||....+ .++...+-+.+.++|+.|.+. .+++|+|..
T Consensus 2 ~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~ 54 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPALLKLKKAGYKFVMVTNQ 54 (161)
T ss_pred CEEEEeCCCCccccCCCccccCCHHHeeECCCHHHHHHHHHHCCCeEEEEeCC
Confidence 5899999999987322 233446778999999999987 589999975
No 64
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=96.67 E-value=0.0053 Score=51.95 Aligned_cols=55 Identities=22% Similarity=0.149 Sum_probs=42.6
Q ss_pred cCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCC-hhhHHHHhc
Q 036329 86 GKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRS-REKVKEFVE 144 (258)
Q Consensus 86 ~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~-~~~l~~~~~ 144 (258)
..-+++++|+||||+.. ....+.+.+.++|+.|.+. .+++|+|+.+ ...+..++.
T Consensus 23 ~~v~~vv~D~Dgtl~~~----~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~ 79 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYP----DHNEAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEK 79 (170)
T ss_pred CCCCEEEEecCCccccC----CCCCcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHH
Confidence 45689999999999974 2346788999999999987 5799999988 444444433
No 65
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.67 E-value=0.0051 Score=55.91 Aligned_cols=58 Identities=24% Similarity=0.212 Sum_probs=45.6
Q ss_pred CCEEEEEecCCccCCCCCC----CC---CccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 87 KKIAVFLDYDGTLSPIVDD----PN---RAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 87 k~~ll~lD~DGTL~~~~~~----p~---~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
+..++++|+||||...... +. ...+.+.+.++|++|.+. ..++|+|||+.......+.
T Consensus 157 ~~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~ 222 (300)
T PHA02530 157 LPKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVE 222 (300)
T ss_pred CCCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHH
Confidence 4678999999999976531 21 346789999999999887 4799999999887765543
No 66
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=96.64 E-value=0.006 Score=52.33 Aligned_cols=45 Identities=31% Similarity=0.380 Sum_probs=39.2
Q ss_pred cCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhC---CEEEEecC
Q 036329 86 GKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYF---PTAIVSGR 134 (258)
Q Consensus 86 ~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~---~V~IvSGR 134 (258)
..-++++||.|.||++ |....++++..+.++++.+.+ .|+|+|-.
T Consensus 39 ~Gik~li~DkDNTL~~----~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNs 86 (168)
T PF09419_consen 39 KGIKALIFDKDNTLTP----PYEDEIPPEYAEWLNELKKQFGKDRVLIVSNS 86 (168)
T ss_pred cCceEEEEcCCCCCCC----CCcCcCCHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 5678999999999998 566789999999999999884 39999965
No 67
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=96.43 E-value=0.0036 Score=59.58 Aligned_cols=48 Identities=23% Similarity=0.351 Sum_probs=39.8
Q ss_pred CCEEEEEecCCccCCC------CCCCCCccCCHHHHHHHHHHHhh-CCEEEEecC
Q 036329 87 KKIAVFLDYDGTLSPI------VDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGR 134 (258)
Q Consensus 87 k~~ll~lD~DGTL~~~------~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR 134 (258)
+++++|||+||||... ...+....+.|.+.++|..|.+. .+++|+|+.
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~y~~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq 55 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTDFQVDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQ 55 (354)
T ss_pred CCcEEEEeCCCCccCCCCccccccCcccceECcCHHHHHHHHHhCCCeEEEEECC
Confidence 4678999999999984 23455678899999999999876 589999984
No 68
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=96.37 E-value=0.0029 Score=53.56 Aligned_cols=48 Identities=19% Similarity=0.297 Sum_probs=37.4
Q ss_pred CEEEEEecCCccCCCC----CCCCCccCCHHHHHHHHHHHhh-CCEEEEecCC
Q 036329 88 KIAVFLDYDGTLSPIV----DDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRS 135 (258)
Q Consensus 88 ~~ll~lD~DGTL~~~~----~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~ 135 (258)
.+++|||.||||.-.. ..+....+-+++.++|++|.+. .+++|+|..+
T Consensus 3 ~~~~~~d~~~t~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~ 55 (181)
T PRK08942 3 MKAIFLDRDGVINVDSDGYVKSPDEWIPIPGSIEAIARLKQAGYRVVVATNQS 55 (181)
T ss_pred ccEEEEECCCCcccCCccccCCHHHeEECCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 4689999999997532 2233445788999999999987 5799999875
No 69
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=96.34 E-value=0.0047 Score=48.20 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=34.3
Q ss_pred EEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhC-CEEEEecCC---hhhHHHHh
Q 036329 91 VFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYF-PTAIVSGRS---REKVKEFV 143 (258)
Q Consensus 91 l~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~-~V~IvSGR~---~~~l~~~~ 143 (258)
++||+||||.. ...+-|.+.++|++|.+.. +++++|-.+ ...+.+.+
T Consensus 1 ~l~D~dGvl~~------g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 1 FLFDLDGVLYN------GNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp EEEESTTTSEE------TTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred CEEeCccEeEe------CCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 68999999996 3345678899999999985 699999554 44444443
No 70
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=96.29 E-value=0.006 Score=52.01 Aligned_cols=34 Identities=12% Similarity=0.001 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHhhCCEEEEecCChhhHHHHhc
Q 036329 111 MSDEMRAAVREVAKYFPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 111 ~~~~~~~aL~~L~~~~~V~IvSGR~~~~l~~~~~ 144 (258)
+.|.+.+.|+.|.+..+++|+|+.....+...+.
T Consensus 69 ~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~ 102 (205)
T PRK13582 69 PLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMR 102 (205)
T ss_pred CCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHH
Confidence 3567788999998777799999999998887754
No 71
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=96.24 E-value=0.0087 Score=49.42 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=44.5
Q ss_pred CCEEEEEecCCccCCCCC--CCC-------------------CccCCHHHHHHHHHHHhhCCEEEEecCChhhHHHHhc
Q 036329 87 KKIAVFLDYDGTLSPIVD--DPN-------------------RAFMSDEMRAAVREVAKYFPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 87 k~~ll~lD~DGTL~~~~~--~p~-------------------~~~~~~~~~~aL~~L~~~~~V~IvSGR~~~~l~~~~~ 144 (258)
++.+++||+||||+.-.. .+. ...+-|.+.+.|+.|.+...++|+|+.....++..+.
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~~~~~~~~il~ 79 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAGLRMYADPVLD 79 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCCcHHHHHHHHH
Confidence 467899999999997521 110 1134689999999998767899999999998887765
No 72
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=96.21 E-value=0.0087 Score=54.84 Aligned_cols=65 Identities=25% Similarity=0.165 Sum_probs=47.5
Q ss_pred ccHHHHHHHhccCCEEEEEecCCccCCCCC---------CC------------CCccCCHHHHHHHHHHHhhC-CEEEEe
Q 036329 75 DSFDRMIKAAKGKKIAVFLDYDGTLSPIVD---------DP------------NRAFMSDEMRAAVREVAKYF-PTAIVS 132 (258)
Q Consensus 75 ~~~~~i~~~~~~k~~ll~lD~DGTL~~~~~---------~p------------~~~~~~~~~~~aL~~L~~~~-~V~IvS 132 (258)
..|++..+..++++.+++||+|+|++...+ .| ..+.+-|.+.+.|+.|.+.. +++|+|
T Consensus 62 ~~~~~~~~~~~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVT 141 (266)
T TIGR01533 62 MRLDNNLKKVKDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVS 141 (266)
T ss_pred HHHHHHHhccCCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEe
Confidence 456666655567889999999999985321 01 13346688999999998874 799999
Q ss_pred cCChhhH
Q 036329 133 GRSREKV 139 (258)
Q Consensus 133 GR~~~~l 139 (258)
+|+....
T Consensus 142 nR~~~~~ 148 (266)
T TIGR01533 142 NRSEKEK 148 (266)
T ss_pred CCCcchH
Confidence 9985543
No 73
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=96.19 E-value=0.007 Score=52.78 Aligned_cols=35 Identities=20% Similarity=0.191 Sum_probs=28.6
Q ss_pred cCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 110 FMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
.+.|.+.+.|+.|.+. .+++|+||.....+..++.
T Consensus 74 ~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~ 109 (219)
T PRK09552 74 EIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQ 109 (219)
T ss_pred CcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHH
Confidence 4677888889888876 4799999999888887665
No 74
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=96.08 E-value=0.007 Score=52.21 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=27.3
Q ss_pred cCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 110 FMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
.+.+.+.+.|+.|.+. .+++|+||.....+..++.
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~ 120 (219)
T TIGR00338 85 PLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKD 120 (219)
T ss_pred CcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHH
Confidence 3567888899999886 5799999988777666554
No 75
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=95.99 E-value=0.011 Score=50.40 Aligned_cols=57 Identities=25% Similarity=0.382 Sum_probs=37.3
Q ss_pred cCCEEEEEecCCccCCCC----CCCC--Ccc-CCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 86 GKKIAVFLDYDGTLSPIV----DDPN--RAF-MSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 86 ~k~~ll~lD~DGTL~~~~----~~p~--~~~-~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
.+-++++||+||||++-. .+-+ .++ +-+. -.++.|.+. .+|+|+|||...-++....
T Consensus 6 ~~IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv~DG--~Gik~l~~~Gi~vAIITGr~s~ive~Ra~ 70 (170)
T COG1778 6 KNIKLLILDVDGVLTDGKLYYDENGEEIKAFNVRDG--HGIKLLLKSGIKVAIITGRDSPIVEKRAK 70 (170)
T ss_pred hhceEEEEeccceeecCeEEEcCCCceeeeeeccCc--HHHHHHHHcCCeEEEEeCCCCHHHHHHHH
Confidence 356899999999999721 1100 011 1111 246666666 4799999999999888765
No 76
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=95.95 E-value=0.017 Score=48.00 Aligned_cols=35 Identities=6% Similarity=0.067 Sum_probs=26.1
Q ss_pred cCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 110 FMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
.+.+++.+.|+.|.+. .+++|+|+.....++..+.
T Consensus 72 ~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~ 107 (188)
T TIGR01489 72 PIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLE 107 (188)
T ss_pred CCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHH
Confidence 3566677788888765 4799999988887776654
No 77
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=95.94 E-value=0.025 Score=48.62 Aligned_cols=62 Identities=26% Similarity=0.284 Sum_probs=48.7
Q ss_pred cCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhcccCceEE
Q 036329 86 GKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVELSNVYYA 151 (258)
Q Consensus 86 ~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~~~~l~li 151 (258)
..-+.+++|+|.||+++.. ...+|++++=+.++... ..|+|+|--....+..+..--++.++
T Consensus 26 ~Gikgvi~DlDNTLv~wd~----~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~fi 88 (175)
T COG2179 26 HGIKGVILDLDNTLVPWDN----PDATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPFI 88 (175)
T ss_pred cCCcEEEEeccCceecccC----CCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCcee
Confidence 3567899999999999853 35679999999999998 57999999888888776653334333
No 78
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=95.93 E-value=0.034 Score=59.64 Aligned_cols=65 Identities=12% Similarity=0.162 Sum_probs=45.1
Q ss_pred CCEEEE--EecCCccCCCCCCCCCccCCHHHHHHHHHHHh--h---CCEEEEecCChhhHHHHhc---cc---CceEEcc
Q 036329 87 KKIAVF--LDYDGTLSPIVDDPNRAFMSDEMRAAVREVAK--Y---FPTAIVSGRSREKVKEFVE---LS---NVYYAGS 153 (258)
Q Consensus 87 k~~ll~--lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~--~---~~V~IvSGR~~~~l~~~~~---~~---~l~lig~ 153 (258)
.+++|+ +|+|+|+ . ..+.+++.++.+.+ . ..++++|||+++.+.+++. ++ +-.+||+
T Consensus 769 ~~~~~via~D~d~~~-~---------~~~~l~~~~~~~~~~~~~~~igfv~aTGR~l~~~~~~l~~~~lp~~~PD~lI~~ 838 (1050)
T TIGR02468 769 RKRLFVIAVDCYDDK-D---------LLQIIKNIFEAVRKERMEGSSGFILSTSMTISEIQSFLKSGGLNPTDFDALICN 838 (1050)
T ss_pred cceEEEEEeccCCCC-C---------hHHHHHHHHHHHhccccCCceEEEEEcCCCHHHHHHHHHhCCCCCCCCCEEEeC
Confidence 456666 8999992 1 12344444555542 1 2478999999999999873 44 3468999
Q ss_pred CCccccCC
Q 036329 154 HGMDIQAP 161 (258)
Q Consensus 154 hG~~i~~p 161 (258)
-|.+|+.+
T Consensus 839 vGTeIyy~ 846 (1050)
T TIGR02468 839 SGSELYYP 846 (1050)
T ss_pred CCcceecc
Confidence 99999986
No 79
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=95.91 E-value=0.042 Score=49.09 Aligned_cols=100 Identities=21% Similarity=0.215 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhCCEEEEecCChhhHHHHhc-c---cC-ceEEccCCccccCCCCCCccccCccccccCCCCCCccccccc
Q 036329 115 MRAAVREVAKYFPTAIVSGRSREKVKEFVE-L---SN-VYYAGSHGMDIQAPPRPVKACEGKYHTLVPGKKGNEVLFQPA 189 (258)
Q Consensus 115 ~~~aL~~L~~~~~V~IvSGR~~~~l~~~~~-~---~~-l~lig~hG~~i~~p~g~~~~~W~~~~~~~~~~~~~~~~~~~~ 189 (258)
|.+.|++|.+...|+||||.++..+.++++ . .. .++..+||+..+..+.. .|.+. + .
T Consensus 1 M~~~L~~L~~~~~vgvVgGsd~~k~~eQl~~~~~~~~fdy~f~enG~~~y~~~~~---~~~~~-------------~--~ 62 (220)
T PF03332_consen 1 MAELLQKLRKKVPVGVVGGSDLPKIQEQLGGDDVLDNFDYVFPENGLVAYKNGEL---IWSQS-------------I--A 62 (220)
T ss_dssp HHHHHHHHHTTSEEEEEESS-HHHHHHHHSTTTHHHH-SEEEEGGGTEEEETTEE---EEE---------------H--H
T ss_pred CHHHHHHHHhcCeEEEEcchhHHHHHHHHcccchHhhCCeeecCCCCeEEECCCc---hhhHh-------------H--H
Confidence 578899999988999999999999999883 2 22 26899999987764432 23210 0 0
Q ss_pred ccCc--hHHHHHHHHHHHHHh-----ccCceEEEecCceEEEEc--CCCChhc
Q 036329 190 KKFL--PAIQEIIKELEEETK-----KIQGARIEDNRFCISVHF--RQVREED 233 (258)
Q Consensus 190 ~~~~--~~~~~v~~~L~~~~~-----r~pGs~VE~K~~sla~HY--R~a~~~~ 233 (258)
+++ +.++++...+..++. ..-|-+||.++..|.+.- |+|+.++
T Consensus 63 -~~lgee~~~~~in~~l~~~~~l~lp~krGtfIE~R~gmIn~SpiGr~a~~ee 114 (220)
T PF03332_consen 63 -EFLGEEKLQKLINFCLRYISDLDLPVKRGTFIEFRGGMINFSPIGRNASQEE 114 (220)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHT---S---S-SEEEESSEEEE-SS-TTS-HHH
T ss_pred -HHcCHHHHHHHHHHHHHHHHhCCCCccCCCceeecCCcEEECcccCcCCHHH
Confidence 111 123333333333332 124999999999999985 7888654
No 80
>PLN02954 phosphoserine phosphatase
Probab=95.83 E-value=0.0097 Score=51.52 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 111 MSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 111 ~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
+.|.+.+.|+.|.+. .+++|+||.....+..++.
T Consensus 85 l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~ 119 (224)
T PLN02954 85 LSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAA 119 (224)
T ss_pred CCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHH
Confidence 568888899999876 4799999999888877654
No 81
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=95.82 E-value=0.013 Score=52.16 Aligned_cols=47 Identities=21% Similarity=0.193 Sum_probs=36.8
Q ss_pred EEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEe---cCChhhHHHHh
Q 036329 91 VFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVS---GRSREKVKEFV 143 (258)
Q Consensus 91 l~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvS---GR~~~~l~~~~ 143 (258)
++||.||||..- ..+.+.+.++|+.|.+. .+++++| ||+...+.+.+
T Consensus 1 ~lfD~DGvL~~~------~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l 51 (236)
T TIGR01460 1 FLFDIDGVLWLG------HKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKL 51 (236)
T ss_pred CEEeCcCccCcC------CccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHH
Confidence 579999999973 23345889999999887 4788998 89998876543
No 82
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=95.76 E-value=0.012 Score=48.61 Aligned_cols=56 Identities=20% Similarity=0.272 Sum_probs=41.3
Q ss_pred EEEEEecCCccCCCCCCCC--------------CccCCHHHHHHHHHHHhhCCEEEEecCChhhHHHHhc
Q 036329 89 IAVFLDYDGTLSPIVDDPN--------------RAFMSDEMRAAVREVAKYFPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 89 ~ll~lD~DGTL~~~~~~p~--------------~~~~~~~~~~aL~~L~~~~~V~IvSGR~~~~l~~~~~ 144 (258)
++|+||+||||+.....+. ...+-|.+.+.|+.|++.+.|+|.|..+...+...+.
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~~ya~~v~~ 70 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASEEYAEPVLD 70 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-HHHHHHHHH
T ss_pred CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHHhceEEEEEeehhhhhhHHHH
Confidence 4789999999997554321 1235789999999998889999999999888877765
No 83
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=95.65 E-value=0.018 Score=51.04 Aligned_cols=46 Identities=15% Similarity=0.110 Sum_probs=36.3
Q ss_pred CCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhh
Q 036329 87 KKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREK 138 (258)
Q Consensus 87 k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~ 138 (258)
+-.+++||.||||.. ...+.|.+.++|++|.+. .+++|+|..+...
T Consensus 7 ~~~~~~~D~dG~l~~------~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~ 53 (242)
T TIGR01459 7 DYDVFLLDLWGVIID------GNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNI 53 (242)
T ss_pred cCCEEEEeccccccc------CCccCccHHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 345799999999986 345678999999999987 4799998765543
No 84
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=95.59 E-value=0.02 Score=48.25 Aligned_cols=34 Identities=32% Similarity=0.282 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 111 MSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 111 ~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
+.+.+.+.|+.|.+. .+++|+||.....+..++.
T Consensus 81 ~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~ 115 (201)
T TIGR01491 81 LRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAE 115 (201)
T ss_pred CCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHH
Confidence 355667778888766 4799999998888777664
No 85
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=95.56 E-value=0.029 Score=48.24 Aligned_cols=57 Identities=21% Similarity=0.155 Sum_probs=42.7
Q ss_pred CEEEEEecCCccCCC----------C-CCCC----------CccCCHHHHHHHHHHHhh-CCEEEEecC-ChhhHHHHhc
Q 036329 88 KIAVFLDYDGTLSPI----------V-DDPN----------RAFMSDEMRAAVREVAKY-FPTAIVSGR-SREKVKEFVE 144 (258)
Q Consensus 88 ~~ll~lD~DGTL~~~----------~-~~p~----------~~~~~~~~~~aL~~L~~~-~~V~IvSGR-~~~~l~~~~~ 144 (258)
.++++||.|+||... . .++. ...+-+.+.++|+.|.+. .+++|+|+. ....+...+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~ 81 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILG 81 (174)
T ss_pred CcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHH
Confidence 478999999999842 1 1121 245789999999999987 479999988 7776666554
No 86
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=95.43 E-value=0.018 Score=49.57 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 111 MSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 111 ~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
+.+.+.++|+.|.+. .+++|+||.....+...+.
T Consensus 83 ~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~ 117 (214)
T PRK13288 83 EYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLK 117 (214)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHH
Confidence 456778899999876 5799999999888776654
No 87
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=95.31 E-value=0.021 Score=47.16 Aligned_cols=34 Identities=24% Similarity=0.188 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 111 MSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 111 ~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
+.+.+.+.|+.+.+. .+++|+||.....++.++.
T Consensus 74 ~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~ 108 (177)
T TIGR01488 74 LRPGARELISWLKERGIDTVIVSGGFDFFVEPVAE 108 (177)
T ss_pred cCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHH
Confidence 457788888888776 4799999998888877664
No 88
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=95.27 E-value=0.025 Score=48.29 Aligned_cols=61 Identities=16% Similarity=0.123 Sum_probs=41.5
Q ss_pred CEEEEEecCCccCCCCC--CCC---CccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhcccCc
Q 036329 88 KIAVFLDYDGTLSPIVD--DPN---RAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVELSNV 148 (258)
Q Consensus 88 ~~ll~lD~DGTL~~~~~--~p~---~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~~~~l 148 (258)
-++++||+||||++-.- +++ ....+-.=-.+++.|.+. .+++|+|+.....+...+...++
T Consensus 7 i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~~D~~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi 73 (169)
T TIGR02726 7 IKLVILDVDGVMTDGRIVINDEGIESRNFDIKDGMGVIVLQLCGIDVAIITSKKSGAVRHRAEELKI 73 (169)
T ss_pred CeEEEEeCceeeECCeEEEcCCCcEEEEEecchHHHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCC
Confidence 57999999999997310 111 112233333578888876 58999999999988887764333
No 89
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=95.06 E-value=0.034 Score=48.23 Aligned_cols=34 Identities=9% Similarity=0.125 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 111 MSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 111 ~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
+.|.+.+.|+.|++. .+++|+|+.....+..++.
T Consensus 93 ~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~ 127 (222)
T PRK10826 93 LLPGVREALALCKAQGLKIGLASASPLHMLEAVLT 127 (222)
T ss_pred CCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHH
Confidence 445677788888776 5799999988887776654
No 90
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=95.05 E-value=0.029 Score=48.82 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=27.8
Q ss_pred cCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 110 FMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
.+.|.+.+.|+.|.+. .+++|+||.....+..++.
T Consensus 70 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~ 105 (214)
T TIGR03333 70 EIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLE 105 (214)
T ss_pred cccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHH
Confidence 4667888888888876 4799999998888877664
No 91
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=95.04 E-value=0.045 Score=47.99 Aligned_cols=59 Identities=17% Similarity=0.111 Sum_probs=45.9
Q ss_pred cCCEEEEEecCCccCCCCC--CCCCccCCHHHHHHHHHHHhhCCEEEEecCChhhHHHHhc
Q 036329 86 GKKIAVFLDYDGTLSPIVD--DPNRAFMSDEMRAAVREVAKYFPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 86 ~k~~ll~lD~DGTL~~~~~--~p~~~~~~~~~~~aL~~L~~~~~V~IvSGR~~~~l~~~~~ 144 (258)
..+++|+||+||||+.... .+.....-|.+.+.|+.+.+.+.|+|-|..+..-++..+.
T Consensus 19 ~~kklLVLDLDeTLvh~~~~~~~~~~~kRP~l~eFL~~~~~~feIvVwTAa~~~ya~~~l~ 79 (195)
T TIGR02245 19 EGKKLLVLDIDYTLFDHRSPAETGEELMRPYLHEFLTSAYEDYDIVIWSATSMKWIEIKMT 79 (195)
T ss_pred CCCcEEEEeCCCceEcccccCCCceEEeCCCHHHHHHHHHhCCEEEEEecCCHHHHHHHHH
Confidence 4567999999999997532 1123355688999999999999999999998887776553
No 92
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=94.84 E-value=0.031 Score=52.47 Aligned_cols=34 Identities=15% Similarity=0.074 Sum_probs=25.4
Q ss_pred cCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHh
Q 036329 110 FMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFV 143 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~ 143 (258)
.+.|.+++.|+.|.+. .+++|+||.....++.+.
T Consensus 181 ~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~ 215 (322)
T PRK11133 181 PLMPGLTELVLKLQALGWKVAIASGGFTYFADYLR 215 (322)
T ss_pred CCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHH
Confidence 4577788888888876 479999998865555444
No 93
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=94.77 E-value=0.08 Score=47.61 Aligned_cols=53 Identities=21% Similarity=0.105 Sum_probs=40.8
Q ss_pred cCCEEEEEecCCccCCC---------CCC------------CCCccCCHHHHHHHHHHHhh-CCEEEEecCChhh
Q 036329 86 GKKIAVFLDYDGTLSPI---------VDD------------PNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREK 138 (258)
Q Consensus 86 ~k~~ll~lD~DGTL~~~---------~~~------------p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~ 138 (258)
.++-+++||+|-|+..- ... -..+..-+.++++++.|.+. ..|+++|||+...
T Consensus 75 dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~ 149 (229)
T TIGR01675 75 DGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEEL 149 (229)
T ss_pred CCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChHH
Confidence 46789999999999852 111 12456678999999999887 4799999998765
No 94
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=94.47 E-value=0.033 Score=48.41 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=35.5
Q ss_pred CEEEEEecCCccCCCCC----CCCCccCCHHHHHHHHHHHhh-CCEEEEe
Q 036329 88 KIAVFLDYDGTLSPIVD----DPNRAFMSDEMRAAVREVAKY-FPTAIVS 132 (258)
Q Consensus 88 ~~ll~lD~DGTL~~~~~----~p~~~~~~~~~~~aL~~L~~~-~~V~IvS 132 (258)
..+||||-||||.-..+ .++.-...+.++++|.+|.+. +.++|||
T Consensus 5 ~k~lflDRDGtin~d~~~yv~~~~~~~~~~g~i~al~~l~~~gy~lVvvT 54 (181)
T COG0241 5 QKALFLDRDGTINIDKGDYVDSLDDFQFIPGVIPALLKLQRAGYKLVVVT 54 (181)
T ss_pred CcEEEEcCCCceecCCCcccCcHHHhccCccHHHHHHHHHhCCCeEEEEE
Confidence 56899999999985322 333446788999999999887 5799999
No 95
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=94.39 E-value=0.077 Score=44.66 Aligned_cols=56 Identities=18% Similarity=0.260 Sum_probs=44.2
Q ss_pred EEEEEecCCccCCCCCCCCC-------------------ccCCHHHHHHHHHHHhhCCEEEEecCChhhHHHHhc
Q 036329 89 IAVFLDYDGTLSPIVDDPNR-------------------AFMSDEMRAAVREVAKYFPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 89 ~ll~lD~DGTL~~~~~~p~~-------------------~~~~~~~~~aL~~L~~~~~V~IvSGR~~~~l~~~~~ 144 (258)
..++||+|+||+.-...|.. ...-|.+.+.|..|++.+.++|.|.-....+..++.
T Consensus 2 ~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~~~yA~~il~ 76 (162)
T TIGR02251 2 KTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASLEEYADPVLD 76 (162)
T ss_pred cEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCcHHHHHHHHH
Confidence 47899999999975444422 135688999999999888899999888887777665
No 96
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=94.28 E-value=0.092 Score=48.90 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=33.1
Q ss_pred EEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-----CCEEEEe---cCChhhH
Q 036329 90 AVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-----FPTAIVS---GRSREKV 139 (258)
Q Consensus 90 ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-----~~V~IvS---GR~~~~l 139 (258)
+++||+||||.. ...+-+.+.++|+.|... .++.++| |++...+
T Consensus 2 ~~ifD~DGvL~~------g~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~ 53 (321)
T TIGR01456 2 GFAFDIDGVLFR------GKKPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERAR 53 (321)
T ss_pred EEEEeCcCceEC------CccccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHH
Confidence 689999999986 234468999999999984 4677776 5665553
No 97
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=94.26 E-value=0.13 Score=47.77 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=44.4
Q ss_pred CCEEEEEecCCccCCCC---CCCCCc---cCCHHHHHHHHHHHhhC-CEEEEecCChhhHHHHhc
Q 036329 87 KKIAVFLDYDGTLSPIV---DDPNRA---FMSDEMRAAVREVAKYF-PTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 87 k~~ll~lD~DGTL~~~~---~~p~~~---~~~~~~~~aL~~L~~~~-~V~IvSGR~~~~l~~~~~ 144 (258)
..++|++|+|+||..-+ +.+... .+.+++.+.|++|.+.. .++|+|..+...+...+.
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~ 66 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFE 66 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHH
Confidence 35789999999999854 222212 34589999999998874 799999999888777664
No 98
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=94.25 E-value=0.031 Score=49.34 Aligned_cols=36 Identities=17% Similarity=0.072 Sum_probs=28.7
Q ss_pred ccCCHHHHHHHHHHHhhC-CEEEEecCChhhHHHHhc
Q 036329 109 AFMSDEMRAAVREVAKYF-PTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 109 ~~~~~~~~~aL~~L~~~~-~V~IvSGR~~~~l~~~~~ 144 (258)
..+.|.+.+.++.+.+.. .|+||||-....+..+..
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~ 112 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAE 112 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHH
Confidence 567888999999999884 799999998876665543
No 99
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=94.13 E-value=0.058 Score=46.34 Aligned_cols=34 Identities=15% Similarity=0.349 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 111 MSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 111 ~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
+-+++.+.|+.|.+. ..++|+||.....+..++.
T Consensus 94 ~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~ 128 (226)
T PRK13222 94 LYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLE 128 (226)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHH
Confidence 556777788888765 4799999998887766654
No 100
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=94.06 E-value=0.089 Score=44.26 Aligned_cols=60 Identities=20% Similarity=0.323 Sum_probs=46.8
Q ss_pred ccCCEEEEEecCCccCCCCCCCC------------------------------CccCCHHHHHHHHHHHhhCCEEEEecC
Q 036329 85 KGKKIAVFLDYDGTLSPIVDDPN------------------------------RAFMSDEMRAAVREVAKYFPTAIVSGR 134 (258)
Q Consensus 85 ~~k~~ll~lD~DGTL~~~~~~p~------------------------------~~~~~~~~~~aL~~L~~~~~V~IvSGR 134 (258)
+.++..++||+|.||+.-...|. ...+-|.+.+.|++|++.+.++|+|..
T Consensus 3 ~~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I~T~~ 82 (156)
T TIGR02250 3 REKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHVYTMG 82 (156)
T ss_pred cCCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEEEeCC
Confidence 46788999999999996433221 122468999999999988889999999
Q ss_pred ChhhHHHHhc
Q 036329 135 SREKVKEFVE 144 (258)
Q Consensus 135 ~~~~l~~~~~ 144 (258)
...-+..++.
T Consensus 83 ~~~yA~~vl~ 92 (156)
T TIGR02250 83 TRAYAQAIAK 92 (156)
T ss_pred cHHHHHHHHH
Confidence 9988877765
No 101
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=94.00 E-value=0.075 Score=45.18 Aligned_cols=52 Identities=15% Similarity=0.243 Sum_probs=38.7
Q ss_pred EEEEecCCccCCC------CCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHH
Q 036329 90 AVFLDYDGTLSPI------VDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKE 141 (258)
Q Consensus 90 ll~lD~DGTL~~~------~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~ 141 (258)
++++|+||||+.- .+--......+.+.+..++++++ +.+.=+|+|+......
T Consensus 1 VVvsDIDGTiT~SD~~G~i~~~~G~d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~ 59 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHILPILGKDWTHPGAAELYRKIADNGYKILYLTARPIGQANR 59 (157)
T ss_pred CEEEeccCCcCccchhhhhhhccCchhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHH
Confidence 4789999999963 11111225678999999999998 4899999999776443
No 102
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=93.96 E-value=0.085 Score=45.45 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 111 MSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 111 ~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
+.+++.+.|+.|.+. .+++|+||.....+...+.
T Consensus 88 l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~ 122 (220)
T TIGR03351 88 ALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLE 122 (220)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHH
Confidence 455667778888765 5799999999888777654
No 103
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=93.90 E-value=0.091 Score=47.62 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 111 MSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 111 ~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
+.+.+.+.|+.|.+. .+++|+|+.+...+...+.
T Consensus 110 l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~ 144 (260)
T PLN03243 110 LRPGSREFVQALKKHEIPIAVASTRPRRYLERAIE 144 (260)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHH
Confidence 345667788888776 4799999998877776553
No 104
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=93.89 E-value=0.065 Score=48.95 Aligned_cols=34 Identities=15% Similarity=0.309 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 111 MSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 111 ~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
+.|.+.+.|+.|.+. .+++|+|+.....+...+.
T Consensus 143 l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~ 177 (273)
T PRK13225 143 LFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQ 177 (273)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHH
Confidence 457888888888876 4799999998888777654
No 105
>PRK08238 hypothetical protein; Validated
Probab=93.88 E-value=0.17 Score=50.00 Aligned_cols=50 Identities=8% Similarity=-0.008 Sum_probs=35.9
Q ss_pred CCccCCHHHHHHHHHHHhhC-CEEEEecCChhhHHHHhcccCc--eEEccCCc
Q 036329 107 NRAFMSDEMRAAVREVAKYF-PTAIVSGRSREKVKEFVELSNV--YYAGSHGM 156 (258)
Q Consensus 107 ~~~~~~~~~~~aL~~L~~~~-~V~IvSGR~~~~l~~~~~~~~l--~lig~hG~ 156 (258)
+...+.+++.+.|+++.+.. +++|+|+.....++.+....++ .++|+++.
T Consensus 69 ~~lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGlFd~Vigsd~~ 121 (479)
T PRK08238 69 ATLPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGLFDGVFASDGT 121 (479)
T ss_pred hhCCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCCEEEeCCCc
Confidence 33345689999999998875 7999999999888876543222 35566553
No 106
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=93.87 E-value=0.12 Score=47.61 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=38.9
Q ss_pred cCCEEEEEecCCccCC---------CCCCC-------------CCccCCHHHHHHHHHHHhh-CCEEEEecCChhh
Q 036329 86 GKKIAVFLDYDGTLSP---------IVDDP-------------NRAFMSDEMRAAVREVAKY-FPTAIVSGRSREK 138 (258)
Q Consensus 86 ~k~~ll~lD~DGTL~~---------~~~~p-------------~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~ 138 (258)
..+-+++||+|+|+.. +...+ ..+..-|.+++..+.|.+. ..|+++|||+-..
T Consensus 99 ~~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~ 174 (275)
T TIGR01680 99 HEKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDK 174 (275)
T ss_pred CCCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCchhH
Confidence 3467999999999983 11111 1345567899999999887 4799999998654
No 107
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=93.75 E-value=0.12 Score=46.68 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=29.5
Q ss_pred cCCHHHHHHHHHHHhh---CCEEEEecCChhhHHHHhc
Q 036329 110 FMSDEMRAAVREVAKY---FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~---~~V~IvSGR~~~~l~~~~~ 144 (258)
.+.|.+.++|+.+++. ..++|+|--..-.|+.++.
T Consensus 71 p~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~ 108 (234)
T PF06888_consen 71 PIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILE 108 (234)
T ss_pred CCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHH
Confidence 4688999999999652 4699999999999999885
No 108
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=93.72 E-value=0.13 Score=47.39 Aligned_cols=48 Identities=23% Similarity=0.243 Sum_probs=36.4
Q ss_pred CEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEe---cCChhhHHH
Q 036329 88 KIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVS---GRSREKVKE 141 (258)
Q Consensus 88 ~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvS---GR~~~~l~~ 141 (258)
-..++||+||||.. ...+-|++.++|++|.+. .+++++| .|+.+.+.+
T Consensus 8 y~~~l~DlDGvl~~------G~~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~ 59 (269)
T COG0647 8 YDGFLFDLDGVLYR------GNEAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAA 59 (269)
T ss_pred cCEEEEcCcCceEe------CCccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 34599999999995 345558999999999998 4788988 455554433
No 109
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=93.60 E-value=0.09 Score=46.31 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=28.5
Q ss_pred cCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 110 FMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
.+-+.+.++|+.|.+. ..++++|+.....+...+.
T Consensus 86 ~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~ 121 (221)
T COG0637 86 KPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLA 121 (221)
T ss_pred CCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHH
Confidence 4567888899999988 6899999998877777664
No 110
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=93.54 E-value=0.096 Score=45.78 Aligned_cols=35 Identities=14% Similarity=0.031 Sum_probs=29.1
Q ss_pred cCCHHHHHHHHHHHhhCCEEEEecCChhhHHHHhc
Q 036329 110 FMSDEMRAAVREVAKYFPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~~~V~IvSGR~~~~l~~~~~ 144 (258)
.+.|.+.+.|+.|.+..+++||||-....+..++.
T Consensus 68 ~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~ 102 (203)
T TIGR02137 68 KPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMR 102 (203)
T ss_pred CCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHH
Confidence 56788888999998877899999998888777654
No 111
>PTZ00445 p36-lilke protein; Provisional
Probab=93.36 E-value=0.17 Score=45.12 Aligned_cols=62 Identities=15% Similarity=0.240 Sum_probs=46.3
Q ss_pred cHHHHHHHhc-cCCEEEEEecCCccCC-----CCCCCC------CccCCHHHHHHHHHHHhh-CCEEEEecCChhh
Q 036329 76 SFDRMIKAAK-GKKIAVFLDYDGTLSP-----IVDDPN------RAFMSDEMRAAVREVAKY-FPTAIVSGRSREK 138 (258)
Q Consensus 76 ~~~~i~~~~~-~k~~ll~lD~DGTL~~-----~~~~p~------~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~ 138 (258)
+-+.+++.++ ..-+++++|||-||++ +.. |. -..++|+....+.+|.+. .+|+|||=.+...
T Consensus 30 ~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~-~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~ 104 (219)
T PTZ00445 30 SADKFVDLLNECGIKVIASDFDLTMITKHSGGYID-PDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKEL 104 (219)
T ss_pred HHHHHHHHHHHcCCeEEEecchhhhhhhhcccccC-CCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhh
Confidence 5566777776 7789999999999998 322 32 123789999999999875 6899999655543
No 112
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=93.23 E-value=0.16 Score=44.34 Aligned_cols=35 Identities=6% Similarity=0.110 Sum_probs=29.7
Q ss_pred cCCHHHHHHHHHHHhhC-CEEEEecCChhhHHHHhc
Q 036329 110 FMSDEMRAAVREVAKYF-PTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~~-~V~IvSGR~~~~l~~~~~ 144 (258)
.+-+.+.++|..|.... +++|+|++....++.++.
T Consensus 89 ~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~ 124 (220)
T COG0546 89 RLFPGVKELLAALKSAGYKLGIVTNKPERELDILLK 124 (220)
T ss_pred ccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHH
Confidence 45778889999999885 899999999999888765
No 113
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=93.02 E-value=0.17 Score=43.41 Aligned_cols=58 Identities=21% Similarity=0.246 Sum_probs=35.1
Q ss_pred CEEEEEecCCccCCCCCCC--------------------CCccCCHHHHHHHHHHHhh-CCEEEEecCC-hhhHHHHhcc
Q 036329 88 KIAVFLDYDGTLSPIVDDP--------------------NRAFMSDEMRAAVREVAKY-FPTAIVSGRS-REKVKEFVEL 145 (258)
Q Consensus 88 ~~ll~lD~DGTL~~~~~~p--------------------~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~-~~~l~~~~~~ 145 (258)
.+|++||+|+||.|.-.+- ....+.+++.++|+.|... ..++|+|--+ .+...+.+..
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~ 82 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKL 82 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHH
T ss_pred CcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHh
Confidence 4689999999999842211 1235688999999999987 4799999543 4455555543
No 114
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=92.56 E-value=0.02 Score=51.07 Aligned_cols=56 Identities=18% Similarity=0.124 Sum_probs=39.6
Q ss_pred cCCEEEEEecCCccCCCCC------------CC---------CCccCCHHHHHHHHHHHhhC-CEEEEecCChhhHHH
Q 036329 86 GKKIAVFLDYDGTLSPIVD------------DP---------NRAFMSDEMRAAVREVAKYF-PTAIVSGRSREKVKE 141 (258)
Q Consensus 86 ~k~~ll~lD~DGTL~~~~~------------~p---------~~~~~~~~~~~aL~~L~~~~-~V~IvSGR~~~~l~~ 141 (258)
.++.+++||+|+||..-.+ +| ..+..-|.+++.++.+.+.. .|++||||+...-..
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~ 147 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPESQREA 147 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEETTCHHH
T ss_pred CCCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCchhHHH
Confidence 5789999999999863100 01 12234456889999998885 799999998875433
No 115
>PLN02940 riboflavin kinase
Probab=92.34 E-value=0.15 Score=48.79 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHh
Q 036329 111 MSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFV 143 (258)
Q Consensus 111 ~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~ 143 (258)
+-+.+.+.|+.|.+. .+++|+|+.+...+...+
T Consensus 94 l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l 127 (382)
T PLN02940 94 ALPGANRLIKHLKSHGVPMALASNSPRANIEAKI 127 (382)
T ss_pred CCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHH
Confidence 346677788888876 579999999888776544
No 116
>PRK11590 hypothetical protein; Provisional
Probab=91.97 E-value=0.083 Score=45.92 Aligned_cols=14 Identities=50% Similarity=0.864 Sum_probs=12.7
Q ss_pred CCEEEEEecCCccC
Q 036329 87 KKIAVFLDYDGTLS 100 (258)
Q Consensus 87 k~~ll~lD~DGTL~ 100 (258)
++++++||+||||+
T Consensus 5 ~~k~~iFD~DGTL~ 18 (211)
T PRK11590 5 ERRVVFFDLDGTLH 18 (211)
T ss_pred cceEEEEecCCCCc
Confidence 56799999999999
No 117
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=91.86 E-value=0.18 Score=48.58 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 111 MSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 111 ~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
+-+.+.+.|+.|.+. .+++|+|+.....+...+.
T Consensus 217 l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~ 251 (381)
T PLN02575 217 LRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIG 251 (381)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHH
Confidence 456777788888776 4799999999888877664
No 118
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=91.71 E-value=0.24 Score=42.35 Aligned_cols=28 Identities=14% Similarity=0.076 Sum_probs=20.6
Q ss_pred cCCHHHHHHHHHHHhhC-CEEEEecCChh
Q 036329 110 FMSDEMRAAVREVAKYF-PTAIVSGRSRE 137 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~~-~V~IvSGR~~~ 137 (258)
.+-+++.++|++|.+.. .+++||+|...
T Consensus 73 ~p~~gA~e~l~~L~~~g~~~~~Itar~~~ 101 (191)
T PF06941_consen 73 PPIPGAVEALKKLRDKGHEIVIITARPPE 101 (191)
T ss_dssp -B-TTHHHHHHHHHTSTTEEEEEEE-SSS
T ss_pred CccHHHHHHHHHHHHcCCcEEEEEecCcc
Confidence 45678999999999985 68888888654
No 119
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=91.29 E-value=0.1 Score=44.42 Aligned_cols=13 Identities=38% Similarity=0.779 Sum_probs=11.4
Q ss_pred EEEEecCCccCCC
Q 036329 90 AVFLDYDGTLSPI 102 (258)
Q Consensus 90 ll~lD~DGTL~~~ 102 (258)
+++||+||||++.
T Consensus 2 ~viFD~DGTLiDs 14 (197)
T TIGR01548 2 ALVLDMDGVMADV 14 (197)
T ss_pred ceEEecCceEEec
Confidence 5899999999973
No 120
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=90.60 E-value=0.29 Score=40.87 Aligned_cols=30 Identities=30% Similarity=0.340 Sum_probs=20.2
Q ss_pred CCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh
Q 036329 87 KKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY 125 (258)
Q Consensus 87 k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~ 125 (258)
+-.+++||+||||++.. +...++++++.+.
T Consensus 4 ~~~~viFD~DGTLiDs~---------~~~~~a~~~~~~~ 33 (188)
T PRK10725 4 RYAGLIFDMDGTILDTE---------PTHRKAWREVLGR 33 (188)
T ss_pred cceEEEEcCCCcCccCH---------HHHHHHHHHHHHH
Confidence 34689999999999732 2445555555554
No 121
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=90.15 E-value=0.2 Score=42.63 Aligned_cols=14 Identities=29% Similarity=0.318 Sum_probs=12.1
Q ss_pred EEEEEecCCccCCC
Q 036329 89 IAVFLDYDGTLSPI 102 (258)
Q Consensus 89 ~ll~lD~DGTL~~~ 102 (258)
++++||+||||++.
T Consensus 1 k~viFDlDGTL~d~ 14 (203)
T TIGR02252 1 KLITFDAVGTLLAL 14 (203)
T ss_pred CeEEEecCCceeee
Confidence 37899999999984
No 122
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=89.72 E-value=0.45 Score=40.77 Aligned_cols=16 Identities=38% Similarity=0.463 Sum_probs=13.2
Q ss_pred CEEEEEecCCccCCCC
Q 036329 88 KIAVFLDYDGTLSPIV 103 (258)
Q Consensus 88 ~~ll~lD~DGTL~~~~ 103 (258)
.++++||+||||+...
T Consensus 2 ~~~viFDlDGTL~ds~ 17 (221)
T TIGR02253 2 IKAIFFDLDDTLIDTS 17 (221)
T ss_pred ceEEEEeCCCCCcCCC
Confidence 3589999999999843
No 123
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=89.70 E-value=0.28 Score=40.67 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=20.0
Q ss_pred EEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhC
Q 036329 90 AVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYF 126 (258)
Q Consensus 90 ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~ 126 (258)
+++||+||||+.-. +....+++++.+..
T Consensus 1 ~iiFD~DGTL~ds~---------~~~~~~~~~~~~~~ 28 (185)
T TIGR01990 1 AVIFDLDGVITDTA---------EYHYLAWKALADEL 28 (185)
T ss_pred CeEEcCCCccccCh---------HHHHHHHHHHHHHc
Confidence 47999999999732 35556667766654
No 124
>PRK11587 putative phosphatase; Provisional
Probab=89.70 E-value=0.17 Score=43.85 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=12.6
Q ss_pred CEEEEEecCCccCCC
Q 036329 88 KIAVFLDYDGTLSPI 102 (258)
Q Consensus 88 ~~ll~lD~DGTL~~~ 102 (258)
..+++||+||||++-
T Consensus 3 ~k~viFDlDGTL~Ds 17 (218)
T PRK11587 3 CKGFLFDLDGTLVDS 17 (218)
T ss_pred CCEEEEcCCCCcCcC
Confidence 357999999999973
No 125
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=89.44 E-value=0.26 Score=40.74 Aligned_cols=14 Identities=36% Similarity=0.463 Sum_probs=11.9
Q ss_pred EEEEecCCccCCCC
Q 036329 90 AVFLDYDGTLSPIV 103 (258)
Q Consensus 90 ll~lD~DGTL~~~~ 103 (258)
+|+||+||||++..
T Consensus 1 ~viFD~DGTL~D~~ 14 (175)
T TIGR01493 1 AMVFDVYGTLVDVH 14 (175)
T ss_pred CeEEecCCcCcccH
Confidence 47999999999853
No 126
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=89.24 E-value=0.48 Score=39.52 Aligned_cols=49 Identities=14% Similarity=0.155 Sum_probs=41.4
Q ss_pred EEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhCCEEEEecCChhhHHHHhccc
Q 036329 92 FLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYFPTAIVSGRSREKVKEFVELS 146 (258)
Q Consensus 92 ~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~~V~IvSGR~~~~l~~~~~~~ 146 (258)
..++++|++. ...+-+++.+.+++|.+...|+|+||-....+.++..+.
T Consensus 18 ~~~v~~tiat------gGklf~ev~e~iqeL~d~V~i~IASgDr~gsl~~lae~~ 66 (152)
T COG4087 18 AGKVLYTIAT------GGKLFSEVSETIQELHDMVDIYIASGDRKGSLVQLAEFV 66 (152)
T ss_pred cceEEEEEcc------CcEEcHhhHHHHHHHHHhheEEEecCCcchHHHHHHHHc
Confidence 4789999997 567778999999999998899999999988888766543
No 127
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=88.90 E-value=0.2 Score=41.63 Aligned_cols=14 Identities=36% Similarity=0.548 Sum_probs=12.2
Q ss_pred EEEEEecCCccCCC
Q 036329 89 IAVFLDYDGTLSPI 102 (258)
Q Consensus 89 ~ll~lD~DGTL~~~ 102 (258)
++++||+||||++.
T Consensus 2 ~~iiFD~DGTL~ds 15 (185)
T TIGR02009 2 KAVIFDMDGVIVDT 15 (185)
T ss_pred CeEEEcCCCcccCC
Confidence 47899999999973
No 128
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=88.42 E-value=0.26 Score=43.19 Aligned_cols=33 Identities=9% Similarity=0.070 Sum_probs=21.1
Q ss_pred CCHHHHHHHH-HHHhh-CCEEEEecCChhhHHHHh
Q 036329 111 MSDEMRAAVR-EVAKY-FPTAIVSGRSREKVKEFV 143 (258)
Q Consensus 111 ~~~~~~~aL~-~L~~~-~~V~IvSGR~~~~l~~~~ 143 (258)
+-|.+.+.|+ .+.+. ..|+|||+.....++.+.
T Consensus 95 l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia 129 (210)
T TIGR01545 95 AFPLVAERLRQYLESSDADIWLITGSPQPLVEAVY 129 (210)
T ss_pred CCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHH
Confidence 3566677774 56643 467788877766666554
No 129
>PHA02597 30.2 hypothetical protein; Provisional
Probab=88.41 E-value=0.23 Score=42.16 Aligned_cols=15 Identities=27% Similarity=0.350 Sum_probs=13.0
Q ss_pred EEEEEecCCccCCCC
Q 036329 89 IAVFLDYDGTLSPIV 103 (258)
Q Consensus 89 ~ll~lD~DGTL~~~~ 103 (258)
++++||+||||+++.
T Consensus 3 k~viFDlDGTLiD~~ 17 (197)
T PHA02597 3 PTILTDVDGVLLSWQ 17 (197)
T ss_pred cEEEEecCCceEchh
Confidence 579999999999854
No 130
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=88.39 E-value=0.24 Score=44.14 Aligned_cols=16 Identities=44% Similarity=0.536 Sum_probs=13.6
Q ss_pred cCCEEEEEecCCccCC
Q 036329 86 GKKIAVFLDYDGTLSP 101 (258)
Q Consensus 86 ~k~~ll~lD~DGTL~~ 101 (258)
++-.+++||+||||++
T Consensus 20 ~~~k~viFDlDGTLiD 35 (248)
T PLN02770 20 APLEAVLFDVDGTLCD 35 (248)
T ss_pred CccCEEEEcCCCccCc
Confidence 3456899999999997
No 131
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=88.16 E-value=0.33 Score=42.91 Aligned_cols=16 Identities=31% Similarity=0.281 Sum_probs=13.6
Q ss_pred CCEEEEEecCCccCCC
Q 036329 87 KKIAVFLDYDGTLSPI 102 (258)
Q Consensus 87 k~~ll~lD~DGTL~~~ 102 (258)
+-++|+||+||||++.
T Consensus 9 ~~k~iiFDlDGTL~D~ 24 (238)
T PRK10748 9 RISALTFDLDDTLYDN 24 (238)
T ss_pred CceeEEEcCcccccCC
Confidence 4568999999999984
No 132
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=87.94 E-value=0.28 Score=41.16 Aligned_cols=13 Identities=46% Similarity=0.675 Sum_probs=11.4
Q ss_pred EEEEecCCccCCC
Q 036329 90 AVFLDYDGTLSPI 102 (258)
Q Consensus 90 ll~lD~DGTL~~~ 102 (258)
+++||+||||++-
T Consensus 2 ~viFDlDGTL~ds 14 (184)
T TIGR01993 2 VWFFDLDNTLYPH 14 (184)
T ss_pred eEEEeCCCCCCCC
Confidence 5899999999973
No 133
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=87.56 E-value=1.4 Score=39.81 Aligned_cols=35 Identities=23% Similarity=0.169 Sum_probs=29.5
Q ss_pred cCCHHHHHHHHHHHhhC--CEEEEecCChhhHHHHhc
Q 036329 110 FMSDEMRAAVREVAKYF--PTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~~--~V~IvSGR~~~~l~~~~~ 144 (258)
.+.|.+.++++.+++.. .+.|||--..-+|+.++.
T Consensus 84 P~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Le 120 (256)
T KOG3120|consen 84 PIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILE 120 (256)
T ss_pred CCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHH
Confidence 35889999999999874 699999998888888764
No 134
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=87.43 E-value=0.32 Score=43.05 Aligned_cols=32 Identities=9% Similarity=0.090 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHhh-CCEEEEecCChhhHHHHh
Q 036329 112 SDEMRAAVREVAKY-FPTAIVSGRSREKVKEFV 143 (258)
Q Consensus 112 ~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~ 143 (258)
-|.+.+.|+.|.+. .+++|+||.+...+...+
T Consensus 101 ~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l 133 (253)
T TIGR01422 101 IPGVIEVIAYLRARGIKIGSTTGYTREMMDVVA 133 (253)
T ss_pred CCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHH
Confidence 34556677777665 468889988887776654
No 135
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=86.98 E-value=0.48 Score=38.29 Aligned_cols=13 Identities=46% Similarity=0.713 Sum_probs=11.2
Q ss_pred EEEEecCCccCCC
Q 036329 90 AVFLDYDGTLSPI 102 (258)
Q Consensus 90 ll~lD~DGTL~~~ 102 (258)
+++||+||||++.
T Consensus 1 ~iifD~DGTL~d~ 13 (154)
T TIGR01549 1 AILFDIDGTLVDS 13 (154)
T ss_pred CeEecCCCccccc
Confidence 4789999999983
No 136
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=86.35 E-value=0.32 Score=42.73 Aligned_cols=33 Identities=0% Similarity=0.038 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHh
Q 036329 111 MSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFV 143 (258)
Q Consensus 111 ~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~ 143 (258)
+-+.+.+.|+.|.+. .+++|+|+.....+...+
T Consensus 94 ~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l 127 (224)
T PRK14988 94 LREDTVPFLEALKASGKRRILLTNAHPHNLAVKL 127 (224)
T ss_pred cCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHH
Confidence 456677778888776 468888887766665544
No 137
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=86.09 E-value=0.35 Score=42.42 Aligned_cols=15 Identities=47% Similarity=0.549 Sum_probs=12.7
Q ss_pred CEEEEEecCCccCCC
Q 036329 88 KIAVFLDYDGTLSPI 102 (258)
Q Consensus 88 ~~ll~lD~DGTL~~~ 102 (258)
.++++||+||||++-
T Consensus 12 ~k~viFD~DGTL~Ds 26 (229)
T PRK13226 12 PRAVLFDLDGTLLDS 26 (229)
T ss_pred CCEEEEcCcCccccC
Confidence 357999999999973
No 138
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=85.98 E-value=0.36 Score=41.24 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=12.2
Q ss_pred EEEEEecCCccCCC
Q 036329 89 IAVFLDYDGTLSPI 102 (258)
Q Consensus 89 ~ll~lD~DGTL~~~ 102 (258)
++++||+||||++.
T Consensus 2 k~viFD~DGTL~d~ 15 (224)
T TIGR02254 2 KTLLFDLDDTILDF 15 (224)
T ss_pred CEEEEcCcCccccc
Confidence 47999999999973
No 139
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=85.80 E-value=1.6 Score=38.46 Aligned_cols=35 Identities=11% Similarity=0.111 Sum_probs=24.5
Q ss_pred ccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHh
Q 036329 109 AFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFV 143 (258)
Q Consensus 109 ~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~ 143 (258)
+.+.|..++.++-..++ .+++||||-.-..+..++
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lf 107 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLF 107 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHH
Confidence 34556666666666665 579999998888877766
No 140
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=85.62 E-value=0.46 Score=43.48 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=14.3
Q ss_pred cCCEEEEEecCCccCCC
Q 036329 86 GKKIAVFLDYDGTLSPI 102 (258)
Q Consensus 86 ~k~~ll~lD~DGTL~~~ 102 (258)
.+-.+++||+||||++-
T Consensus 38 ~~~k~VIFDlDGTLvDS 54 (286)
T PLN02779 38 ALPEALLFDCDGVLVET 54 (286)
T ss_pred cCCcEEEEeCceeEEcc
Confidence 45578999999999983
No 141
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=85.59 E-value=0.42 Score=42.84 Aligned_cols=32 Identities=13% Similarity=0.154 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHhh-CCEEEEecCChhhHHHHh
Q 036329 112 SDEMRAAVREVAKY-FPTAIVSGRSREKVKEFV 143 (258)
Q Consensus 112 ~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~ 143 (258)
-|.+.++|+.|.+. .+++|+||.....+...+
T Consensus 103 ~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l 135 (267)
T PRK13478 103 IPGVLEVIAALRARGIKIGSTTGYTREMMDVVV 135 (267)
T ss_pred CCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH
Confidence 44566677777765 478999998887766554
No 142
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=85.08 E-value=0.35 Score=41.30 Aligned_cols=11 Identities=45% Similarity=0.721 Sum_probs=10.0
Q ss_pred EEEecCCccCC
Q 036329 91 VFLDYDGTLSP 101 (258)
Q Consensus 91 l~lD~DGTL~~ 101 (258)
++||+||||+.
T Consensus 1 iiFDlDGTL~D 11 (205)
T TIGR01454 1 VVFDLDGVLVD 11 (205)
T ss_pred CeecCcCcccc
Confidence 58999999997
No 143
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=84.72 E-value=0.82 Score=41.44 Aligned_cols=14 Identities=43% Similarity=0.534 Sum_probs=12.4
Q ss_pred EEEEEecCCccCCC
Q 036329 89 IAVFLDYDGTLSPI 102 (258)
Q Consensus 89 ~ll~lD~DGTL~~~ 102 (258)
.+++||+||||++-
T Consensus 14 k~viFDlDGTL~Ds 27 (272)
T PRK13223 14 RLVMFDLDGTLVDS 27 (272)
T ss_pred CEEEEcCCCccccC
Confidence 48999999999973
No 144
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=84.11 E-value=0.54 Score=40.49 Aligned_cols=15 Identities=53% Similarity=0.634 Sum_probs=12.8
Q ss_pred CEEEEEecCCccCCC
Q 036329 88 KIAVFLDYDGTLSPI 102 (258)
Q Consensus 88 ~~ll~lD~DGTL~~~ 102 (258)
-++++||+||||++.
T Consensus 4 ~~~viFD~DGTL~d~ 18 (221)
T PRK10563 4 IEAVFFDCDGTLVDS 18 (221)
T ss_pred CCEEEECCCCCCCCC
Confidence 468999999999963
No 145
>PRK09449 dUMP phosphatase; Provisional
Probab=83.97 E-value=0.51 Score=40.67 Aligned_cols=32 Identities=6% Similarity=-0.047 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHhhCCEEEEecCChhhHHHHh
Q 036329 112 SDEMRAAVREVAKYFPTAIVSGRSREKVKEFV 143 (258)
Q Consensus 112 ~~~~~~aL~~L~~~~~V~IvSGR~~~~l~~~~ 143 (258)
-+.+.++|+.|.+..+++|+|+.....+...+
T Consensus 97 ~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l 128 (224)
T PRK09449 97 LPGAVELLNALRGKVKMGIITNGFTELQQVRL 128 (224)
T ss_pred CccHHHHHHHHHhCCeEEEEeCCcHHHHHHHH
Confidence 34455666677654567777776666555433
No 146
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=83.62 E-value=0.57 Score=38.91 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=18.8
Q ss_pred HHHHHHHhh-CCEEEEecCChhhHHHHh
Q 036329 117 AAVREVAKY-FPTAIVSGRSREKVKEFV 143 (258)
Q Consensus 117 ~aL~~L~~~-~~V~IvSGR~~~~l~~~~ 143 (258)
+.|+.+.+. .+|+|+||-....+..++
T Consensus 96 e~i~~~~~~~~~v~IvS~~~~~~i~~~~ 123 (192)
T PF12710_consen 96 ELIRELKDNGIKVVIVSGSPDEIIEPIA 123 (192)
T ss_dssp HHHHHHHHTTSEEEEEEEEEHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEECCCcHHHHHHHH
Confidence 556665544 468899988777777665
No 147
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=83.32 E-value=3.7 Score=38.01 Aligned_cols=37 Identities=14% Similarity=0.228 Sum_probs=29.0
Q ss_pred CccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 108 RAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 108 ~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
...+.|.+.+.|+.|.+. .+++|+||-....++..+.
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~ 156 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLR 156 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHH
Confidence 345677888888888776 5899999998888877765
No 148
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=82.53 E-value=0.49 Score=40.25 Aligned_cols=34 Identities=9% Similarity=0.200 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 111 MSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 111 ~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
+-+.+.++|+.|.+. .+++|+|+.....+..++.
T Consensus 86 ~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~ 120 (213)
T TIGR01449 86 VFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLE 120 (213)
T ss_pred cCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHH
Confidence 445666677777665 4688888877766666554
No 149
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=82.50 E-value=0.55 Score=39.71 Aligned_cols=13 Identities=46% Similarity=0.902 Sum_probs=10.9
Q ss_pred EEEEecCCccCCC
Q 036329 90 AVFLDYDGTLSPI 102 (258)
Q Consensus 90 ll~lD~DGTL~~~ 102 (258)
+.+||+||||++.
T Consensus 1 ~a~FD~DgTL~~~ 13 (202)
T TIGR01490 1 LAFFDFDGTLTAK 13 (202)
T ss_pred CeEEccCCCCCCC
Confidence 3789999999973
No 150
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=82.42 E-value=0.69 Score=39.16 Aligned_cols=14 Identities=36% Similarity=0.422 Sum_probs=12.2
Q ss_pred EEEEEecCCccCCC
Q 036329 89 IAVFLDYDGTLSPI 102 (258)
Q Consensus 89 ~ll~lD~DGTL~~~ 102 (258)
++++||+||||++.
T Consensus 2 k~viFD~dgTLiD~ 15 (198)
T TIGR01428 2 KALVFDVYGTLFDV 15 (198)
T ss_pred cEEEEeCCCcCccH
Confidence 47999999999974
No 151
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=81.89 E-value=0.78 Score=39.21 Aligned_cols=14 Identities=43% Similarity=0.736 Sum_probs=12.1
Q ss_pred EEEEEecCCccCCC
Q 036329 89 IAVFLDYDGTLSPI 102 (258)
Q Consensus 89 ~ll~lD~DGTL~~~ 102 (258)
.+++||+||||++.
T Consensus 3 k~viFDldGtL~d~ 16 (211)
T TIGR02247 3 KAVIFDFGGVLLPS 16 (211)
T ss_pred eEEEEecCCceecC
Confidence 47999999999973
No 152
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=81.18 E-value=0.6 Score=38.38 Aligned_cols=13 Identities=38% Similarity=0.698 Sum_probs=11.2
Q ss_pred EEEEecCCccCCC
Q 036329 90 AVFLDYDGTLSPI 102 (258)
Q Consensus 90 ll~lD~DGTL~~~ 102 (258)
+++||+||||++.
T Consensus 1 ~vlFDlDgtLv~~ 13 (183)
T TIGR01509 1 AILFDLDGVLVDT 13 (183)
T ss_pred CeeeccCCceech
Confidence 3789999999975
No 153
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=80.13 E-value=5.2 Score=36.28 Aligned_cols=69 Identities=14% Similarity=0.229 Sum_probs=48.6
Q ss_pred ccHHHHHHHhc--cCCEEEEEecCCccCCCCCC---C------------------------------------CCccCCH
Q 036329 75 DSFDRMIKAAK--GKKIAVFLDYDGTLSPIVDD---P------------------------------------NRAFMSD 113 (258)
Q Consensus 75 ~~~~~i~~~~~--~k~~ll~lD~DGTL~~~~~~---p------------------------------------~~~~~~~ 113 (258)
.+|+++..... ....+++||+|-||...... | ....+.+
T Consensus 5 ~s~~eV~~~~~~~~~~tLvvfDiDdTLi~~~~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~ 84 (252)
T PF11019_consen 5 YSFHEVQDYLENADQDTLVVFDIDDTLITPKQPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIES 84 (252)
T ss_pred cCHHHHHHHHHcCCCCeEEEEEcchhhhcCccccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcch
Confidence 37888866654 37899999999999953210 0 1112467
Q ss_pred HHHHHHHHHHhh-CCEEEEecCChhhHHHHh
Q 036329 114 EMRAAVREVAKY-FPTAIVSGRSREKVKEFV 143 (258)
Q Consensus 114 ~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~ 143 (258)
.+.+.++.|+.. .+|+.+|.|........+
T Consensus 85 ~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~ 115 (252)
T PF11019_consen 85 DVPNIINSLQNKGIPVIALTARGPNMEDWTL 115 (252)
T ss_pred hHHHHHHHHHHCCCcEEEEcCCChhhHHHHH
Confidence 778889999987 579999999976654433
No 154
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=79.84 E-value=1.1 Score=38.35 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=18.0
Q ss_pred cCCHHHHHHHHHHHhhCCEEEEecCC
Q 036329 110 FMSDEMRAAVREVAKYFPTAIVSGRS 135 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~~~V~IvSGR~ 135 (258)
.+.+++++.|++|....+++|+|--.
T Consensus 99 ~~~~~~~~~L~~l~~~~~l~ilTNg~ 124 (229)
T COG1011 99 PDYPEALEALKELGKKYKLGILTNGA 124 (229)
T ss_pred ccChhHHHHHHHHHhhccEEEEeCCC
Confidence 45667777777777766688888643
No 155
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=79.48 E-value=0.94 Score=44.14 Aligned_cols=13 Identities=46% Similarity=0.631 Sum_probs=12.0
Q ss_pred EEEEEecCCccCC
Q 036329 89 IAVFLDYDGTLSP 101 (258)
Q Consensus 89 ~ll~lD~DGTL~~ 101 (258)
.+++||+||||++
T Consensus 242 k~vIFDlDGTLiD 254 (459)
T PRK06698 242 QALIFDMDGTLFQ 254 (459)
T ss_pred hheeEccCCceec
Confidence 6799999999997
No 156
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=78.82 E-value=0.84 Score=36.54 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=27.8
Q ss_pred cCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 110 FMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
.+.+++.++|++|.+. .+++|+|+.+...+...+.
T Consensus 77 ~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~ 112 (176)
T PF13419_consen 77 QPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLE 112 (176)
T ss_dssp EESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHH
T ss_pred chhhhhhhhhhhcccccceeEEeecCCccccccccc
Confidence 4678888999999855 5799999998887766553
No 157
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=78.48 E-value=1.1 Score=38.10 Aligned_cols=14 Identities=14% Similarity=0.323 Sum_probs=12.4
Q ss_pred EEEEEecCCccCCC
Q 036329 89 IAVFLDYDGTLSPI 102 (258)
Q Consensus 89 ~ll~lD~DGTL~~~ 102 (258)
.+++||+||||+++
T Consensus 1 ~~viFDldgvL~d~ 14 (199)
T PRK09456 1 MLYIFDLGNVIVDI 14 (199)
T ss_pred CEEEEeCCCccccC
Confidence 37999999999985
No 158
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=77.85 E-value=5.2 Score=35.24 Aligned_cols=68 Identities=19% Similarity=0.213 Sum_probs=44.9
Q ss_pred cHHHHHHHhc-cCCEEEEEecCCccCCCCC---------CC-------------------CCccCCHHHHHHHHHHHh-h
Q 036329 76 SFDRMIKAAK-GKKIAVFLDYDGTLSPIVD---------DP-------------------NRAFMSDEMRAAVREVAK-Y 125 (258)
Q Consensus 76 ~~~~i~~~~~-~k~~ll~lD~DGTL~~~~~---------~p-------------------~~~~~~~~~~~aL~~L~~-~ 125 (258)
+..+|...+. .+...+-||+|.|+.--.+ .| +.-.+|.++..-|-.... .
T Consensus 50 SvaqI~~SLeG~~Pi~VsFDIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~R 129 (237)
T COG3700 50 SVAQIENSLEGRPPIAVSFDIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRR 129 (237)
T ss_pred EHHHHHhhhcCCCCeeEeeccCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhc
Confidence 8999999887 4567888999999983111 01 223355555444433333 3
Q ss_pred C-CEEEEecCChhhHHHHh
Q 036329 126 F-PTAIVSGRSREKVKEFV 143 (258)
Q Consensus 126 ~-~V~IvSGR~~~~l~~~~ 143 (258)
. .|+.+|||+..+++..-
T Consensus 130 GD~i~FvTGRt~gk~d~vs 148 (237)
T COG3700 130 GDAIYFVTGRTPGKTDTVS 148 (237)
T ss_pred CCeEEEEecCCCCcccccc
Confidence 3 59999999998876543
No 159
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=76.01 E-value=6 Score=37.11 Aligned_cols=42 Identities=17% Similarity=0.063 Sum_probs=31.4
Q ss_pred EEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhCC-EEEEecCChh
Q 036329 90 AVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYFP-TAIVSGRSRE 137 (258)
Q Consensus 90 ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~~-V~IvSGR~~~ 137 (258)
.++||.||.|.-- ..+-|.+.++|+.|.+..+ +.++|-.+..
T Consensus 24 tfifDcDGVlW~g------~~~ipGs~e~l~~L~~~gK~i~fvTNNStk 66 (306)
T KOG2882|consen 24 TFIFDCDGVLWLG------EKPIPGSPEALNLLKSLGKQIIFVTNNSTK 66 (306)
T ss_pred EEEEcCCcceeec------CCCCCChHHHHHHHHHcCCcEEEEeCCCcc
Confidence 5899999999972 2233678888889988874 8888855443
No 160
>PF07700 HNOB: Heme NO binding; InterPro: IPR011644 This ligand-binding domain is found in soluble guanylate cyclases. In soluble guanylate cyclases this domain binds heme via a covalent linkage to histidine []. Soluble guanylate cyclases are nitric oxide-responsive signaling proteins.; GO: 0020037 heme binding; PDB: 3TFE_A 2O0C_B 3TFA_A 2O09_B 2O0G_B 3L6J_A 3TFG_B 3TF8_A 3TFF_A 3TF9_B ....
Probab=74.17 E-value=6.6 Score=33.12 Aligned_cols=113 Identities=18% Similarity=0.228 Sum_probs=75.7
Q ss_pred CccCCHHHHHHHHHHHhhCCEEEEecCChhhHHHHhcccCceEEccCCcc--ccCCCCCCccccCccccccCCCCCCccc
Q 036329 108 RAFMSDEMRAAVREVAKYFPTAIVSGRSREKVKEFVELSNVYYAGSHGMD--IQAPPRPVKACEGKYHTLVPGKKGNEVL 185 (258)
Q Consensus 108 ~~~~~~~~~~aL~~L~~~~~V~IvSGR~~~~l~~~~~~~~l~lig~hG~~--i~~p~g~~~~~W~~~~~~~~~~~~~~~~ 185 (258)
....+..+.+.+.++++ ++|.+.+++-..+|-.-+....+.|.. ++.-+..
T Consensus 41 ~~Y~D~~~~~lv~a~a~------~~g~~~~~~l~~fG~~~~~~~~~~~~~~~l~~~g~~--------------------- 93 (171)
T PF07700_consen 41 GNYDDEETYKLVEAAAE------VTGISVEELLEEFGEYFFDFLSESGYERLLRFLGRD--------------------- 93 (171)
T ss_dssp SBTTHHHHHHHHHHHHH------HHTS-HHHHHHHHHHHHHHHHHHHCCHHHHHCTCSS---------------------
T ss_pred cccCHHHHHHHHHHHHH------HhCCCHHHHHHHHHHHHHHHHHHhCcHHHHHhcCCC---------------------
Confidence 33455677777777776 578999999999985444455666655 3332221
Q ss_pred ccccccCchHHHHHHHHHHHHHh--ccCceEEEe-cCceEEEEcCCCChhcHHHHHHHHHHHHhhCCC
Q 036329 186 FQPAKKFLPAIQEIIKELEEETK--KIQGARIED-NRFCISVHFRQVREEDYSVLQEKVKAVLRNYPD 250 (258)
Q Consensus 186 ~~~~~~~~~~~~~v~~~L~~~~~--r~pGs~VE~-K~~sla~HYR~a~~~~~~~~~~~~~~~l~~~p~ 250 (258)
-.+|+.-++.+...+..... ..|...++. ..-.+.+||+.-.+.....+...++.+++.+-+
T Consensus 94 ---~~~FL~~ld~iH~~v~~~~p~~~~P~f~~~~~~~~~l~l~Y~S~R~gl~~~~~Gli~g~A~~f~~ 158 (171)
T PF07700_consen 94 ---LFDFLNNLDNIHEEVRKLYPDAKPPSFRCEEEDDNELTLHYRSPRPGLCPYVIGLIRGAAKHFFE 158 (171)
T ss_dssp ---HHHHHHHHHHHHHHHHHHSTTSS--EEEEEEEETTEEEEEEEESSSSTHHHHHHHHHHHHHHTTE
T ss_pred ---HHHHHHhHHHHHHHHHHhCCCCcCCeEEEEECCCCEEEEEEECCCcCHHHHHHHHHHHHHHHhCC
Confidence 13577777777777765443 346666766 567999999987767778888888888887644
No 161
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=74.12 E-value=4.7 Score=38.38 Aligned_cols=66 Identities=17% Similarity=0.159 Sum_probs=42.9
Q ss_pred cCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-----CCEEEEe-cCCh------hhHHHHhc--ccCceEE
Q 036329 86 GKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-----FPTAIVS-GRSR------EKVKEFVE--LSNVYYA 151 (258)
Q Consensus 86 ~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-----~~V~IvS-GR~~------~~l~~~~~--~~~l~li 151 (258)
.+...|+||+||.|.- ...+-++..++|+.|.++ .+++.+| |-.. +++...+| ++..-++
T Consensus 33 ~~~fgfafDIDGVL~R------G~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~Vs~dqvi 106 (389)
T KOG1618|consen 33 PPTFGFAFDIDGVLFR------GHRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEVSADQVI 106 (389)
T ss_pred CCceeEEEecccEEEe------cCCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCccCHHHHH
Confidence 5678999999999996 345667889999999987 2455555 3322 23455555 2334445
Q ss_pred ccCCcc
Q 036329 152 GSHGMD 157 (258)
Q Consensus 152 g~hG~~ 157 (258)
-+|--+
T Consensus 107 qSHsP~ 112 (389)
T KOG1618|consen 107 QSHSPF 112 (389)
T ss_pred hhcChH
Confidence 555543
No 162
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=65.89 E-value=14 Score=34.12 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=43.2
Q ss_pred cCCEEEEEecCCccCCCC---------------------CCCCCccCCHHHHHHHHHHHhhC-------CEEEEecCChh
Q 036329 86 GKKIAVFLDYDGTLSPIV---------------------DDPNRAFMSDEMRAAVREVAKYF-------PTAIVSGRSRE 137 (258)
Q Consensus 86 ~k~~ll~lD~DGTL~~~~---------------------~~p~~~~~~~~~~~aL~~L~~~~-------~V~IvSGR~~~ 137 (258)
....=|+||.||+|.... ..|...-|-...+..|.+|++.. +++|||.|+..
T Consensus 119 ~~qlRIAFDgDaVLfsDesE~vy~~~GL~~F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR~ap 198 (264)
T PF06189_consen 119 DDQLRIAFDGDAVLFSDESERVYQEQGLEAFHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTARSAP 198 (264)
T ss_pred CCceEEEEcCCeEeecCcchHhHHhccHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcCCCc
Confidence 456779999999999632 23444456677888888888762 38999999887
Q ss_pred hHHHHhc
Q 036329 138 KVKEFVE 144 (258)
Q Consensus 138 ~l~~~~~ 144 (258)
.-.+.+.
T Consensus 199 ah~RvI~ 205 (264)
T PF06189_consen 199 AHERVIR 205 (264)
T ss_pred hhHHHHH
Confidence 7666554
No 163
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=65.27 E-value=27 Score=34.02 Aligned_cols=57 Identities=16% Similarity=0.015 Sum_probs=35.7
Q ss_pred HHHHhc-cCCEEEEEecCCccCCCCCCCCCccCCHHHHH-HHHHHHhhCCEEEEecCChhhH
Q 036329 80 MIKAAK-GKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRA-AVREVAKYFPTAIVSGRSREKV 139 (258)
Q Consensus 80 i~~~~~-~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~-aL~~L~~~~~V~IvSGR~~~~l 139 (258)
|++..+ .+-.|+-||=|+||.+.+.+- ..+..++. .++-|+.+..|+|||.-.....
T Consensus 138 i~al~~~~~L~LvTFDgDvTLY~DG~sl---~~d~pvi~~ii~LL~~gv~VgIVTAAGY~~a 196 (408)
T PF06437_consen 138 IMALAKNYGLKLVTFDGDVTLYEDGASL---EPDNPVIPRIIKLLRRGVKVGIVTAAGYPGA 196 (408)
T ss_pred HHHhcccCCceEEEEcCCcccccCCCCC---CCCchHHHHHHHHHhcCCeEEEEeCCCCCCh
Confidence 344444 366899999999999854321 12334444 4444445578999996665553
No 164
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=64.67 E-value=30 Score=32.42 Aligned_cols=80 Identities=18% Similarity=0.140 Sum_probs=50.2
Q ss_pred CCchhhhhhhhhCCCCCccHHHHH--HHhccCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhC-CEEEEecC
Q 036329 58 TSDASYNSWMVEHPSALDSFDRMI--KAAKGKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYF-PTAIVSGR 134 (258)
Q Consensus 58 ~~~~~~~~w~~~~p~~l~~~~~i~--~~~~~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~-~V~IvSGR 134 (258)
|.-.-..+|..-.-.. ...+. ..+-..+-+|+||.|-||..-..+ -....|.+.+.|.+|.+.. -+++=|--
T Consensus 93 ~~y~~L~EW~v~~~~e---v~~l~~~~~~~~~phVIVfDlD~TLItd~~~--v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG 167 (297)
T PF05152_consen 93 PMYNFLKEWYVQDYSE---VYQLKEESLVWEPPHVIVFDLDSTLITDEGD--VRIRDPAVYDSLRELKEQGCVLVLWSYG 167 (297)
T ss_pred cHHHHHHHHhcCChhh---hhhhhhhhccCCCCcEEEEECCCcccccCCc--cccCChHHHHHHHHHHHcCCEEEEecCC
Confidence 4455567887542222 22221 112256779999999999974321 2235789999999999987 46666755
Q ss_pred ChhhHHHH
Q 036329 135 SREKVKEF 142 (258)
Q Consensus 135 ~~~~l~~~ 142 (258)
+.+-+..-
T Consensus 168 ~~eHV~~s 175 (297)
T PF05152_consen 168 NREHVRHS 175 (297)
T ss_pred CHHHHHHH
Confidence 55555543
No 165
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=64.61 E-value=14 Score=37.29 Aligned_cols=61 Identities=11% Similarity=0.282 Sum_probs=46.1
Q ss_pred cCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhcccCc
Q 036329 86 GKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVELSNV 148 (258)
Q Consensus 86 ~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~~~~l 148 (258)
.....++++.||++...-. -...+.|++.++|++|.+. .+++|+||.....++.+....++
T Consensus 383 ~g~~~~~~~~~~~~~g~~~--~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi 444 (562)
T TIGR01511 383 QGSTSVLVAVNGELAGVFA--LEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGI 444 (562)
T ss_pred CCCEEEEEEECCEEEEEEE--ecccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 3457888999999976432 1234678999999999987 57999999999888877654344
No 166
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=64.33 E-value=15 Score=36.71 Aligned_cols=57 Identities=19% Similarity=0.353 Sum_probs=45.1
Q ss_pred cCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh--CCEEEEecCChhhHHHHhc
Q 036329 86 GKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY--FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 86 ~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~--~~V~IvSGR~~~~l~~~~~ 144 (258)
...+.+++..||++..... ....+-|++.++|+.|.+. .+++|+||.....+..+..
T Consensus 362 ~g~~~~~v~~~~~~~g~i~--~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~ 420 (556)
T TIGR01525 362 QGKTVVFVAVDGELLGVIA--LRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAA 420 (556)
T ss_pred CCcEEEEEEECCEEEEEEE--ecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHH
Confidence 4567888999999886532 1335779999999999876 4799999999988877665
No 167
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=63.47 E-value=4.1 Score=34.08 Aligned_cols=14 Identities=36% Similarity=0.368 Sum_probs=11.8
Q ss_pred EEEEEecCCccCCC
Q 036329 89 IAVFLDYDGTLSPI 102 (258)
Q Consensus 89 ~ll~lD~DGTL~~~ 102 (258)
.+|+||.||||+..
T Consensus 2 ~~i~fDktGTLt~~ 15 (215)
T PF00702_consen 2 DAICFDKTGTLTQG 15 (215)
T ss_dssp SEEEEECCTTTBES
T ss_pred eEEEEecCCCcccC
Confidence 36899999999873
No 168
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=61.54 E-value=18 Score=36.26 Aligned_cols=75 Identities=24% Similarity=0.234 Sum_probs=49.0
Q ss_pred CCCCccHHHHHHHhc-cCCEEEEEecCCccCCCC--CC-CCCc--------cCCHHHHHHHHHHHhhC-CEEEEecCChh
Q 036329 71 PSALDSFDRMIKAAK-GKKIAVFLDYDGTLSPIV--DD-PNRA--------FMSDEMRAAVREVAKYF-PTAIVSGRSRE 137 (258)
Q Consensus 71 p~~l~~~~~i~~~~~-~k~~ll~lD~DGTL~~~~--~~-p~~~--------~~~~~~~~aL~~L~~~~-~V~IvSGR~~~ 137 (258)
|.+-+....++++.. ...++|+||+|+||..-+ ++ -+.. ....+..+.+..|.+.. -++|+|=....
T Consensus 204 ~l~~~ei~Sl~~A~~g~~kK~LVLDLDNTLWGGVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~ 283 (574)
T COG3882 204 PLAADEIASLLAAMSGKSKKALVLDLDNTLWGGVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNTEK 283 (574)
T ss_pred hHhhHHHHHHHHHhhCcccceEEEecCCcccccccccccccceeecCCCCchhHHHHHHHHHHHHhccEEEEEecCCchh
Confidence 333344555666554 567899999999999521 11 1111 23355666677777764 48999999999
Q ss_pred hHHHHhcc
Q 036329 138 KVKEFVEL 145 (258)
Q Consensus 138 ~l~~~~~~ 145 (258)
++.+.|..
T Consensus 284 da~evF~k 291 (574)
T COG3882 284 DAKEVFRK 291 (574)
T ss_pred hHHHHHhh
Confidence 98888763
No 169
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=57.89 E-value=4.8 Score=43.69 Aligned_cols=16 Identities=50% Similarity=0.731 Sum_probs=13.6
Q ss_pred cCCEEEEEecCCccCC
Q 036329 86 GKKIAVFLDYDGTLSP 101 (258)
Q Consensus 86 ~k~~ll~lD~DGTL~~ 101 (258)
.+-++++||+||||++
T Consensus 73 ~~ikaVIFDlDGTLiD 88 (1057)
T PLN02919 73 GKVSAVLFDMDGVLCN 88 (1057)
T ss_pred CCCCEEEECCCCCeEe
Confidence 3557899999999997
No 170
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=57.10 E-value=32 Score=31.70 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=14.9
Q ss_pred hccCCEEEEEecCCccCCC
Q 036329 84 AKGKKIAVFLDYDGTLSPI 102 (258)
Q Consensus 84 ~~~k~~ll~lD~DGTL~~~ 102 (258)
..+...+++.|.||-+...
T Consensus 191 l~Ad~Li~lTDVdGVy~~d 209 (284)
T cd04256 191 LKADLLILLSDVDGLYDGP 209 (284)
T ss_pred cCCCEEEEEeCCCeeecCC
Confidence 3467788889999999753
No 171
>TIGR02399 salt_tol_Pase glucosylglycerol 3-phosphatase. Proteins in this family are glucosylglycerol-phosphate phosphatase, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=56.21 E-value=20 Score=34.50 Aligned_cols=46 Identities=22% Similarity=0.389 Sum_probs=40.5
Q ss_pred ccCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhCCEEEEe
Q 036329 85 KGKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYFPTAIVS 132 (258)
Q Consensus 85 ~~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~~V~IvS 132 (258)
.++..||+=|+||.=+|.+.||...++++.-+.|.+.|.. ..+|.|
T Consensus 5 ~~~nlLiVQDLDGVCmpLVkDPltR~ld~~Yv~A~~~l~~--~F~VLT 50 (389)
T TIGR02399 5 NTENLLIVQDLDGVCIPLVKDPLTRKLDSKYVFAVKNLEK--EFYVLT 50 (389)
T ss_pred CCCCeEEEecCCccchhhccCcccccCCHHHHHHHHHhcC--cEEEEe
Confidence 3678999999999999999999999999998888877766 577888
No 172
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=55.71 E-value=15 Score=35.79 Aligned_cols=78 Identities=18% Similarity=0.265 Sum_probs=48.5
Q ss_pred ccCCEEEEEecCCccCCCCC------CCCC-ccCCHHHHHHHHHHHhh-CCEEEEe-----cCChhh-------HHHHh-
Q 036329 85 KGKKIAVFLDYDGTLSPIVD------DPNR-AFMSDEMRAAVREVAKY-FPTAIVS-----GRSREK-------VKEFV- 143 (258)
Q Consensus 85 ~~k~~ll~lD~DGTL~~~~~------~p~~-~~~~~~~~~aL~~L~~~-~~V~IvS-----GR~~~~-------l~~~~- 143 (258)
++....+.|||||||..-.+ +|++ ..+.++.-.-|+.|..+ +.++|-| +|..-. +..++
T Consensus 72 ~~~~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~a 151 (422)
T KOG2134|consen 72 NGGSKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIVA 151 (422)
T ss_pred CCCcceEEEecCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHHH
Confidence 36678899999999996432 2322 24566777778888877 4677776 333222 23333
Q ss_pred --cccCceEEccCCccccCCC
Q 036329 144 --ELSNVYYAGSHGMDIQAPP 162 (258)
Q Consensus 144 --~~~~l~lig~hG~~i~~p~ 162 (258)
++|=..+++.++-.+|.|.
T Consensus 152 nl~vPi~~~~A~~~~~yRKP~ 172 (422)
T KOG2134|consen 152 NLGVPIQLLAAIIKGKYRKPS 172 (422)
T ss_pred hcCCceEEeeeccCCcccCcc
Confidence 3333346777777777774
No 173
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=54.00 E-value=13 Score=33.67 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=20.2
Q ss_pred CCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHH
Q 036329 87 KKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVRE 121 (258)
Q Consensus 87 k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~ 121 (258)
+..+||||+|.||.|.. ..+...+++-+.+
T Consensus 14 ~~~~l~FDiDdtLYp~S-----t~i~~~~~~nI~~ 43 (244)
T KOG3109|consen 14 NYKCLFFDIDDTLYPLS-----TGIQLMMRNNIQE 43 (244)
T ss_pred cceEEEEecccccccCc-----hhHHHHHHHHHHH
Confidence 66899999999999842 3444555544433
No 174
>PRK10671 copA copper exporting ATPase; Provisional
Probab=53.13 E-value=37 Score=35.84 Aligned_cols=78 Identities=15% Similarity=0.265 Sum_probs=50.3
Q ss_pred hhhhhCCCCCccHHHHHHHhc-cCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHH
Q 036329 65 SWMVEHPSALDSFDRMIKAAK-GKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEF 142 (258)
Q Consensus 65 ~w~~~~p~~l~~~~~i~~~~~-~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~ 142 (258)
.|+...+.....++.....+. ...+++++-+||++.....- ...+-+++.++|++|.+. .+++|+||.....+..+
T Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~va~~~~~~g~~~l--~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~i 683 (834)
T PRK10671 606 ALLNEQQVDTKALEAEITAQASQGATPVLLAVDGKAAALLAI--RDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAI 683 (834)
T ss_pred HHHHHcCCChHHHHHHHHHHHhCCCeEEEEEECCEEEEEEEc--cCcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHH
Confidence 455544433333444444433 44577888889998743221 123457888999999887 47999999988887665
Q ss_pred hc
Q 036329 143 VE 144 (258)
Q Consensus 143 ~~ 144 (258)
..
T Consensus 684 a~ 685 (834)
T PRK10671 684 AK 685 (834)
T ss_pred HH
Confidence 54
No 175
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=53.05 E-value=7 Score=34.67 Aligned_cols=14 Identities=43% Similarity=0.627 Sum_probs=12.0
Q ss_pred EEEEEecCCccCCC
Q 036329 89 IAVFLDYDGTLSPI 102 (258)
Q Consensus 89 ~ll~lD~DGTL~~~ 102 (258)
++++||++||++|+
T Consensus 2 ~~~l~diegt~~~i 15 (220)
T TIGR01691 2 KNVLLDIEGTTGSI 15 (220)
T ss_pred CEEEEecCCCcccH
Confidence 46899999999985
No 176
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=52.94 E-value=7.3 Score=38.89 Aligned_cols=14 Identities=43% Similarity=0.411 Sum_probs=12.3
Q ss_pred CEEEEEecCCccCC
Q 036329 88 KIAVFLDYDGTLSP 101 (258)
Q Consensus 88 ~~ll~lD~DGTL~~ 101 (258)
...++||+||||+.
T Consensus 22 ~~~~~FDfDGTLt~ 35 (497)
T PLN02177 22 NQTVAADLDGTLLI 35 (497)
T ss_pred ccEEEEecCCcccC
Confidence 55799999999997
No 177
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=52.73 E-value=25 Score=32.36 Aligned_cols=69 Identities=28% Similarity=0.210 Sum_probs=49.6
Q ss_pred CCCCCccHHHHHHHhccCCEEEEEecCCccCCCCC------------CC---------CCccCCHHHHHHHHHHHhhC-C
Q 036329 70 HPSALDSFDRMIKAAKGKKIAVFLDYDGTLSPIVD------------DP---------NRAFMSDEMRAAVREVAKYF-P 127 (258)
Q Consensus 70 ~p~~l~~~~~i~~~~~~k~~ll~lD~DGTL~~~~~------------~p---------~~~~~~~~~~~aL~~L~~~~-~ 127 (258)
+-+|=-.|+.-....++|..++++|+|-|+.+-.+ +| ..+.+-|.+.+.|+=.-.+. .
T Consensus 61 yn~Ak~~~d~~~k~~k~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ 140 (274)
T COG2503 61 YNSAKIALDTQAKKKKGKKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGK 140 (274)
T ss_pred hhhHHHHHHhhhccccCCCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhcCcE
Confidence 44444456666666678888999999999986321 12 13456678888888877774 6
Q ss_pred EEEEecCChhh
Q 036329 128 TAIVSGRSREK 138 (258)
Q Consensus 128 V~IvSGR~~~~ 138 (258)
|+-||-|+.+.
T Consensus 141 ifyiSNR~~~~ 151 (274)
T COG2503 141 IFYISNRDQEN 151 (274)
T ss_pred EEEEeccchhc
Confidence 99999998876
No 178
>TIGR00071 hisT_truA pseudouridylate synthase I. universal so far, single copy in all prokaryotes, 3 in yeast. Trusted cutoff for orthology is about 100 based on 1 match only in complete prokaryote with length 200.
Probab=50.85 E-value=21 Score=31.73 Aligned_cols=54 Identities=28% Similarity=0.408 Sum_probs=38.0
Q ss_pred CEEEEEecCCccC-CCCCCCCCccCCHHHHHHHHHHHhhCCEEEEecCChhhHHH
Q 036329 88 KIAVFLDYDGTLS-PIVDDPNRAFMSDEMRAAVREVAKYFPTAIVSGRSREKVKE 141 (258)
Q Consensus 88 ~~ll~lD~DGTL~-~~~~~p~~~~~~~~~~~aL~~L~~~~~V~IvSGR~~~~l~~ 141 (258)
+.+|.+-||||=. .+...|+...+-.++.++|.++....-.++.+||+-..+..
T Consensus 2 ~~~l~i~YdGt~f~G~Q~Q~~~~TVq~~le~aL~~~~~~~i~~~~agRTD~GVHA 56 (227)
T TIGR00071 2 KIALKIAYDGSNYHGWQRQPNKRTVQGELEKALEAIGKKKITIMSAGRTDKGVHA 56 (227)
T ss_pred eEEEEEEEcCCCeeEEeECcCCCCHHHHHHHHHHHHhCCCeeEEeeccCcCCccc
Confidence 4678899999955 56656666667778888888877543356788887665544
No 179
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=50.78 E-value=14 Score=29.25 Aligned_cols=11 Identities=45% Similarity=0.815 Sum_probs=7.1
Q ss_pred EEEecCCccCC
Q 036329 91 VFLDYDGTLSP 101 (258)
Q Consensus 91 l~lD~DGTL~~ 101 (258)
|+||+||||++
T Consensus 1 iifD~dgtL~d 11 (176)
T PF13419_consen 1 IIFDLDGTLVD 11 (176)
T ss_dssp EEEESBTTTEE
T ss_pred cEEECCCCcEe
Confidence 46677777764
No 180
>PF09506 Salt_tol_Pase: Glucosylglycerol-phosphate phosphatase (Salt_tol_Pase); InterPro: IPR012765 Proteins in this family are glucosylglycerol-phosphate phosphatases, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol.
Probab=50.22 E-value=27 Score=33.48 Aligned_cols=43 Identities=21% Similarity=0.386 Sum_probs=37.8
Q ss_pred CEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhCCEEEEe
Q 036329 88 KIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYFPTAIVS 132 (258)
Q Consensus 88 ~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~~V~IvS 132 (258)
..||+=|+||.=+|.+.||...++++.-+.|.++|.. ..+|.|
T Consensus 2 nlLivQDLDGVCm~LVkDPltR~ld~~Yv~A~~~l~~--~F~VLT 44 (381)
T PF09506_consen 2 NLLIVQDLDGVCMPLVKDPLTRRLDPDYVRAARQLEG--HFYVLT 44 (381)
T ss_pred CeeEEecCCccchhhccCccccccCHHHHHHHHHhcC--cEEEEe
Confidence 5789999999999999999999999998888877766 577788
No 181
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=48.76 E-value=24 Score=29.83 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=29.4
Q ss_pred ccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 109 AFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 109 ~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
..+.+.+.+.|+.|.+. .+++|+||.+...+...+.
T Consensus 74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~ 110 (205)
T TIGR01454 74 VEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLE 110 (205)
T ss_pred cccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHH
Confidence 35668999999999987 5899999998887776654
No 182
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=47.62 E-value=44 Score=27.87 Aligned_cols=54 Identities=13% Similarity=0.093 Sum_probs=40.1
Q ss_pred CEEEEEecCCccCCCCCCCC----CccCCHHHHHHHHHHHhhC-CEEEEecCChhhHHH
Q 036329 88 KIAVFLDYDGTLSPIVDDPN----RAFMSDEMRAAVREVAKYF-PTAIVSGRSREKVKE 141 (258)
Q Consensus 88 ~~ll~lD~DGTL~~~~~~p~----~~~~~~~~~~aL~~L~~~~-~V~IvSGR~~~~l~~ 141 (258)
.+++-+|+|+|+-|+..++. .-.+.+..+..|.+|.+.. .++++|--...++.+
T Consensus 18 P~~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~ 76 (144)
T KOG4549|consen 18 PRLVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIAS 76 (144)
T ss_pred eEEEEecccccccccccCcccCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHHHH
Confidence 57888999999999866553 3346788899999999985 677877655555443
No 183
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=46.45 E-value=48 Score=34.64 Aligned_cols=61 Identities=10% Similarity=0.189 Sum_probs=45.2
Q ss_pred cCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhcccCc
Q 036329 86 GKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVELSNV 148 (258)
Q Consensus 86 ~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~~~~l 148 (258)
...+.+++=+||++.-+.. -...+-+++.++|++|.+. .+++|+||........+....++
T Consensus 546 ~g~~~v~va~~~~~~g~i~--l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi 607 (741)
T PRK11033 546 AGKTVVLVLRNDDVLGLIA--LQDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGI 607 (741)
T ss_pred CCCEEEEEEECCEEEEEEE--EecCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCC
Confidence 4457788889999875322 1224558999999999987 57999999999988877654444
No 184
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=45.20 E-value=94 Score=27.77 Aligned_cols=80 Identities=15% Similarity=0.063 Sum_probs=43.2
Q ss_pred cHHHHHHHhccCCEEEEEec-CCccCC----CCC-CCCCccCCHHHHHHHHHHHhhC-CEEEEecCChh---------hH
Q 036329 76 SFDRMIKAAKGKKIAVFLDY-DGTLSP----IVD-DPNRAFMSDEMRAAVREVAKYF-PTAIVSGRSRE---------KV 139 (258)
Q Consensus 76 ~~~~i~~~~~~k~~ll~lD~-DGTL~~----~~~-~p~~~~~~~~~~~aL~~L~~~~-~V~IvSGR~~~---------~l 139 (258)
.+.++.+.|.+.+.++.+|+ ||.+.+ .+. +--...-.....+.+++|.+.. .-+++|+++.+ .+
T Consensus 112 ~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~ 191 (254)
T TIGR00735 112 LIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELT 191 (254)
T ss_pred HHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHH
Confidence 34566666644677888995 565432 000 0001112345567777777764 67788888773 23
Q ss_pred HHHhcccCceEEccCC
Q 036329 140 KEFVELSNVYYAGSHG 155 (258)
Q Consensus 140 ~~~~~~~~l~lig~hG 155 (258)
.++....++.++++-|
T Consensus 192 ~~i~~~~~ipvia~GG 207 (254)
T TIGR00735 192 KAVSEAVKIPVIASGG 207 (254)
T ss_pred HHHHHhCCCCEEEeCC
Confidence 3333333455555544
No 185
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=45.04 E-value=73 Score=29.18 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=16.6
Q ss_pred HHhccCCEEEEEecCCccCCC
Q 036329 82 KAAKGKKIAVFLDYDGTLSPI 102 (258)
Q Consensus 82 ~~~~~k~~ll~lD~DGTL~~~ 102 (258)
...++.+.+++.|.||.+..+
T Consensus 191 ~~l~Ad~li~lTdv~Gv~~~~ 211 (284)
T CHL00202 191 AKLNAEKLILLTDTPGILADI 211 (284)
T ss_pred HHhCCCEEEEEeCChhhcCCC
Confidence 344578888999999999854
No 186
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=44.37 E-value=76 Score=30.44 Aligned_cols=58 Identities=26% Similarity=0.330 Sum_probs=46.0
Q ss_pred CccHHHHHHHhccCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhCCEEEEecCChhh
Q 036329 74 LDSFDRMIKAAKGKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYFPTAIVSGRSREK 138 (258)
Q Consensus 74 l~~~~~i~~~~~~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~~V~IvSGR~~~~ 138 (258)
...++.|.+....+.++|++.+ | .||..+..+++.++.|-++++...++|||--..+.
T Consensus 150 ~~d~~~l~~~i~~ktk~i~ln~-----P--~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~ 207 (393)
T COG0436 150 KPDLEDLEAAITPKTKAIILNS-----P--NNPTGAVYSKEELKAIVELAREHDIIIISDEIYEE 207 (393)
T ss_pred cCCHHHHHhhcCccceEEEEeC-----C--CCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhh
Confidence 3457888887777888888765 3 46888999999999999999999999999444433
No 187
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=42.94 E-value=29 Score=36.03 Aligned_cols=80 Identities=14% Similarity=0.149 Sum_probs=49.9
Q ss_pred ccCCEEEEEecCCccCCCC------CCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHH---Hhc-ccCceEEcc
Q 036329 85 KGKKIAVFLDYDGTLSPIV------DDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKE---FVE-LSNVYYAGS 153 (258)
Q Consensus 85 ~~k~~ll~lD~DGTL~~~~------~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~---~~~-~~~l~lig~ 153 (258)
+...++++-|+|||++--. +--...--...+...-.++.++ +++.-.|.|.+..... ++. +..-+.+-.
T Consensus 527 kWn~kIVISDIDGTITKSDvLGh~lp~iGkDWTh~GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~LP 606 (738)
T KOG2116|consen 527 KWNDKIVISDIDGTITKSDVLGHVLPMIGKDWTHTGVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKKLP 606 (738)
T ss_pred ecCCcEEEecCCCceEhhhhhhhhhhhhcCcchhhhHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCccCC
Confidence 4566789999999999510 0000111245666667777777 4788999998877543 343 233356666
Q ss_pred CCccccCCCCC
Q 036329 154 HGMDIQAPPRP 164 (258)
Q Consensus 154 hG~~i~~p~g~ 164 (258)
.|-.+..|++-
T Consensus 607 dGPViLSPd~l 617 (738)
T KOG2116|consen 607 DGPVILSPDSL 617 (738)
T ss_pred CCCEEeCCCcc
Confidence 67677777663
No 188
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=42.06 E-value=1.1e+02 Score=28.29 Aligned_cols=67 Identities=22% Similarity=0.267 Sum_probs=45.0
Q ss_pred HHHHHhccCCEEEEEecCCccCCCCCC-------C--------C---CccCCHHHHHHHHHHHhhC-CEEEEecCChhhH
Q 036329 79 RMIKAAKGKKIAVFLDYDGTLSPIVDD-------P--------N---RAFMSDEMRAAVREVAKYF-PTAIVSGRSREKV 139 (258)
Q Consensus 79 ~i~~~~~~k~~ll~lD~DGTL~~~~~~-------p--------~---~~~~~~~~~~aL~~L~~~~-~V~IvSGR~~~~l 139 (258)
++..+.++.+.+++.|.+|-|-...+. + + ..-|-+.+..|++++.... .|.|++||....+
T Consensus 170 ~iA~aLkAekLi~ltdv~Gvl~~~~~~s~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~~A~~~Gv~~v~ii~g~~~~~l 249 (265)
T COG0548 170 ALAAALKAEKLILLTDVPGVLDDKGDPSLISELDAEEAEELIEQGIITGGMIPKVEAALEALESGVRRVHIISGRVPHSL 249 (265)
T ss_pred HHHHHcCCCeEEEEeCCcccccCCCCceeeccCCHHHHHHHHhcCCccCccHHHHHHHHHHHHhCCCeEEEecCCCcchH
Confidence 455566788999999999999865420 0 0 1223466667777777665 5889999988874
Q ss_pred -HHHhcc
Q 036329 140 -KEFVEL 145 (258)
Q Consensus 140 -~~~~~~ 145 (258)
.++|.-
T Consensus 250 l~eLFt~ 256 (265)
T COG0548 250 LLELFTR 256 (265)
T ss_pred HHHHhcC
Confidence 445543
No 189
>COG0101 TruA Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]
Probab=41.32 E-value=42 Score=30.90 Aligned_cols=53 Identities=26% Similarity=0.349 Sum_probs=37.4
Q ss_pred CEEEEEecCCccCC-CCCCCCCccCCHHHHHHHHHHHhhCCEEEEecCChhhHH
Q 036329 88 KIAVFLDYDGTLSP-IVDDPNRAFMSDEMRAAVREVAKYFPTAIVSGRSREKVK 140 (258)
Q Consensus 88 ~~ll~lD~DGTL~~-~~~~p~~~~~~~~~~~aL~~L~~~~~V~IvSGR~~~~l~ 140 (258)
+.++.+-||||-.- +...|+...+-.++..+|.++.....-++.+||+-..+.
T Consensus 3 ri~l~iaYdGt~f~G~Q~Qp~~~TVQ~~le~aL~~i~~~~~~i~~AGRTD~GVH 56 (266)
T COG0101 3 RIALKIAYDGTRFHGWQRQPNVRTVQGELEKALSKIGGESVRVIGAGRTDAGVH 56 (266)
T ss_pred eEEEEEEEcCCceeeeccCCCCCCHHHHHHHHHHHhcCCcceeEEecCCCcCcc
Confidence 67888999999864 555565556667777777777765445788888766543
No 190
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=39.75 E-value=1.3e+02 Score=27.52 Aligned_cols=66 Identities=15% Similarity=0.245 Sum_probs=39.0
Q ss_pred HHHHHhccCCEEEEEecCCccCCCCC-CCCC-----------------ccCCHHHHHHHHHHHh---hC-CEEEEecCCh
Q 036329 79 RMIKAAKGKKIAVFLDYDGTLSPIVD-DPNR-----------------AFMSDEMRAAVREVAK---YF-PTAIVSGRSR 136 (258)
Q Consensus 79 ~i~~~~~~k~~ll~lD~DGTL~~~~~-~p~~-----------------~~~~~~~~~aL~~L~~---~~-~V~IvSGR~~ 136 (258)
.+.+..+..+.+++.|.||.+..... .|+. .-++-.+..-|+++.+ .. .|+|+.|+..
T Consensus 155 ~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi~ng~~~ 234 (252)
T COG1608 155 HLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALLEIARYGKEVYIFNGNKP 234 (252)
T ss_pred HHHHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhhhcCcCcccchhhHHHHHHHHHHHHhcCceEEEECCCCH
Confidence 33445568888889999999985332 2211 1223334443444333 22 3788888888
Q ss_pred hhHHHHhc
Q 036329 137 EKVKEFVE 144 (258)
Q Consensus 137 ~~l~~~~~ 144 (258)
+.|.+++.
T Consensus 235 ~ni~~~l~ 242 (252)
T COG1608 235 ENIYRALR 242 (252)
T ss_pred HHHHHHhc
Confidence 88777664
No 191
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=39.28 E-value=80 Score=28.40 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=32.9
Q ss_pred HhccCCEEEEEecCCccCCCCCCCC-------------CccCCHHHHHHHHHHHhhC-CEEEEecCChhhHHHHh
Q 036329 83 AAKGKKIAVFLDYDGTLSPIVDDPN-------------RAFMSDEMRAAVREVAKYF-PTAIVSGRSREKVKEFV 143 (258)
Q Consensus 83 ~~~~k~~ll~lD~DGTL~~~~~~p~-------------~~~~~~~~~~aL~~L~~~~-~V~IvSGR~~~~l~~~~ 143 (258)
..++.+.+++.|.||-+..-..-+. ..-|-+.+..+++.+.... .|.|++|+..+.+.+++
T Consensus 176 ~L~A~~li~~tdv~Gv~~~~~~i~~i~~~e~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~i~~g~~~~~l~~~l 250 (257)
T cd04251 176 ALKAERLILLTDVEGLYLDGRVIERITVSDAESLLEKAGGGMKRKLLAAAEAVEGGVREVVIGDARADSPISSAL 250 (257)
T ss_pred HcCCCEEEEEeCChhheeCCcccCccCHHHHHHHHhhCCCchHHHHHHHHHHHHcCCCEEEEecCCCccHHHHHH
Confidence 4457888899999998853000000 0112222333333333333 46777787777777665
No 192
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=38.25 E-value=85 Score=32.78 Aligned_cols=61 Identities=23% Similarity=0.330 Sum_probs=36.4
Q ss_pred hccCCEEEEEecCCccCCCCCCCCCcc-------------------------CCHHHHHHHHHHHhhCCEEEEecCChhh
Q 036329 84 AKGKKIAVFLDYDGTLSPIVDDPNRAF-------------------------MSDEMRAAVREVAKYFPTAIVSGRSREK 138 (258)
Q Consensus 84 ~~~k~~ll~lD~DGTL~~~~~~p~~~~-------------------------~~~~~~~aL~~L~~~~~V~IvSGR~~~~ 138 (258)
..+...+++.|.||-+.....+|+... |-+.+..+...+....+++|++|+..+.
T Consensus 180 l~Ad~LiilTDVdGVy~~dP~~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~~Kl~aa~~a~~~gi~v~I~~g~~~~~ 259 (715)
T TIGR01092 180 LKADLLILLSDVEGLYDGPPSDDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMTAKVKAAVWAAYGGTPVIIASGTAPKN 259 (715)
T ss_pred cCCCEEEEEeCCCeeeCCCCCCCCCeEeeeecccchhhhhccCcccccCCCCchHHHHHHHHHHHCCCeEEEeCCCCcch
Confidence 347778888999999975322222211 2222222332222224689999998888
Q ss_pred HHHHhc
Q 036329 139 VKEFVE 144 (258)
Q Consensus 139 l~~~~~ 144 (258)
+.+++.
T Consensus 260 l~~~l~ 265 (715)
T TIGR01092 260 ITKVVE 265 (715)
T ss_pred HHHHhc
Confidence 888774
No 193
>PRK00358 pyrH uridylate kinase; Provisional
Probab=37.93 E-value=85 Score=27.46 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=36.3
Q ss_pred HhccCCEEEEEecCCccCC-CCCCCCCcc---CCH-HHH---------HHHHHHH-hh-CCEEEEecCChhhHHHHhc
Q 036329 83 AAKGKKIAVFLDYDGTLSP-IVDDPNRAF---MSD-EMR---------AAVREVA-KY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 83 ~~~~k~~ll~lD~DGTL~~-~~~~p~~~~---~~~-~~~---------~aL~~L~-~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
..+++..+++.|.||-... +..+|+... ++. ++. .++ +++ +. .+++|++|+..+.+.+++.
T Consensus 146 ~l~A~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~-~~a~~~~i~v~I~~g~~~~~l~~~l~ 222 (231)
T PRK00358 146 EIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEKGLKVMDATAI-SLARDNKIPIIVFNMNKPGNLKRVVK 222 (231)
T ss_pred HcCCCEEEEeeCcCceEcCCCCCCCCCEEeeEecHHHHHHcCCcchhHHHH-HHHHHcCCcEEEECCCCchHHHHHHC
Confidence 3457778888999999974 222233222 211 111 122 333 22 4689999999998888774
No 194
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=37.26 E-value=53 Score=27.71 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=28.2
Q ss_pred cCCHHHHHHHHHHHhhCCEEEEecCChhhHHHHhc
Q 036329 110 FMSDEMRAAVREVAKYFPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~~~V~IvSGR~~~~l~~~~~ 144 (258)
.+-+.+.+.|+.|.+...++|+|+.....+...+.
T Consensus 97 ~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~ 131 (224)
T TIGR02254 97 QLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLR 131 (224)
T ss_pred eeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHH
Confidence 45578899999998887799999998887766554
No 195
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=36.80 E-value=48 Score=27.72 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 111 MSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 111 ~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
+.+++.++|++|.+. .+++|+|+-+...+...+.
T Consensus 93 ~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~ 127 (198)
T TIGR01428 93 PHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVK 127 (198)
T ss_pred CCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHH
Confidence 457889999999987 6899999988887776654
No 196
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=36.63 E-value=80 Score=28.54 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=15.7
Q ss_pred HHhccCCEEEEEecCCccCC
Q 036329 82 KAAKGKKIAVFLDYDGTLSP 101 (258)
Q Consensus 82 ~~~~~k~~ll~lD~DGTL~~ 101 (258)
....+.+.+++.|.||-+..
T Consensus 179 ~~l~A~~li~ltdv~Gv~~~ 198 (268)
T PRK14058 179 GALKAEALVLLSDVPGLLRD 198 (268)
T ss_pred HHcCCCEEEEEeCChhhccC
Confidence 34457788888999999975
No 197
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=36.08 E-value=46 Score=28.22 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=27.1
Q ss_pred cCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHh
Q 036329 110 FMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFV 143 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~ 143 (258)
.+.|.+.++|+.|.+. .+++|+|+.....+...+
T Consensus 94 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l 128 (221)
T TIGR02253 94 RVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKL 128 (221)
T ss_pred CCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHH
Confidence 4567999999999987 579999999877665544
No 198
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=36.03 E-value=55 Score=32.66 Aligned_cols=56 Identities=16% Similarity=0.165 Sum_probs=43.2
Q ss_pred CEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-C-CEEEEecCChhhHHHHhcc
Q 036329 88 KIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-F-PTAIVSGRSREKVKEFVEL 145 (258)
Q Consensus 88 ~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~-~V~IvSGR~~~~l~~~~~~ 145 (258)
...+++-.||++...... ...+-+++.++|++|.+. . +++|+||.....+..+...
T Consensus 342 ~~~~~v~~~~~~~g~i~~--~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~ 399 (536)
T TIGR01512 342 KTIVHVARDGTYLGYILL--SDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARE 399 (536)
T ss_pred CeEEEEEECCEEEEEEEE--eccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHH
Confidence 456777788888764321 335679999999999987 6 7999999999888777653
No 199
>PTZ00489 glutamate 5-kinase; Provisional
Probab=35.87 E-value=1.2e+02 Score=27.57 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=14.4
Q ss_pred hccCCEEEEEecCCccCC
Q 036329 84 AKGKKIAVFLDYDGTLSP 101 (258)
Q Consensus 84 ~~~k~~ll~lD~DGTL~~ 101 (258)
..+...+++.|.||-...
T Consensus 160 l~Ad~LiilTDVdGVy~~ 177 (264)
T PTZ00489 160 FKADLLVILSDIDGYYTE 177 (264)
T ss_pred hCCCEEEEeeccCeeEcC
Confidence 346778888999999974
No 200
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=35.61 E-value=80 Score=27.66 Aligned_cols=61 Identities=15% Similarity=0.213 Sum_probs=35.5
Q ss_pred hccCCEEEEEecCCccCCC-CCCCCCccC---C-HHHH---------HHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 84 AKGKKIAVFLDYDGTLSPI-VDDPNRAFM---S-DEMR---------AAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 84 ~~~k~~ll~lD~DGTL~~~-~~~p~~~~~---~-~~~~---------~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
..++..+++.|.||-.... ...|+...+ + +++. .+++.+.+. .+|+|+.|+..+.+.+.+.
T Consensus 145 l~a~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~ 220 (229)
T cd04239 145 IGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKGLKVMDATALTLCRRNKIPIIVFNGLKPGNLLRALK 220 (229)
T ss_pred cCCCEEEEEECCCcccCCCCCCCCCCeEEeEEcHHHHHHHhcCCccHHHHHHHHHCCCeEEEECCCChhHHHHHHc
Confidence 4577788889999999642 112222221 1 2221 222222332 4689999998888877664
No 201
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=35.27 E-value=67 Score=28.66 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=15.2
Q ss_pred HhccCCEEEEEecCCccCC
Q 036329 83 AAKGKKIAVFLDYDGTLSP 101 (258)
Q Consensus 83 ~~~~k~~ll~lD~DGTL~~ 101 (258)
..++...+|+.|.||-+..
T Consensus 154 ~l~Ad~liilTDVdGvy~~ 172 (251)
T cd04242 154 LVNADLLILLSDVDGLYDK 172 (251)
T ss_pred HcCCCEEEEecCcCEEEeC
Confidence 3457788889999999975
No 202
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=34.94 E-value=54 Score=26.77 Aligned_cols=33 Identities=9% Similarity=0.140 Sum_probs=24.6
Q ss_pred ccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHh
Q 036329 109 AFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFV 143 (258)
Q Consensus 109 ~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~ 143 (258)
..+.|++.+.|+.|.+. ..++|+|+. ..+...+
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l 120 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRIL 120 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHH
Confidence 34568999999999887 579999997 4444443
No 203
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=34.38 E-value=37 Score=27.85 Aligned_cols=13 Identities=46% Similarity=0.772 Sum_probs=11.0
Q ss_pred EEEecCCccCCCC
Q 036329 91 VFLDYDGTLSPIV 103 (258)
Q Consensus 91 l~lD~DGTL~~~~ 103 (258)
++||+||||+.-.
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 5899999999854
No 204
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=34.06 E-value=51 Score=29.31 Aligned_cols=15 Identities=13% Similarity=0.228 Sum_probs=8.5
Q ss_pred CCCCccHHHHHHHhc
Q 036329 71 PSALDSFDRMIKAAK 85 (258)
Q Consensus 71 p~~l~~~~~i~~~~~ 85 (258)
+..++...++++.++
T Consensus 100 ~~~~pg~~elL~~L~ 114 (267)
T PRK13478 100 ATPIPGVLEVIAALR 114 (267)
T ss_pred CCCCCCHHHHHHHHH
Confidence 344555566666665
No 205
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=34.02 E-value=87 Score=32.66 Aligned_cols=58 Identities=9% Similarity=0.198 Sum_probs=42.7
Q ss_pred ccCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 85 KGKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 85 ~~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
....+.+++-+|+++.-...- .-.+-|++.+++++|.+. .+++++||-.......+..
T Consensus 423 ~~G~r~l~va~~~~~lG~i~l--~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~ 481 (675)
T TIGR01497 423 RQGGTPLVVCEDNRIYGVIYL--KDIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAA 481 (675)
T ss_pred hCCCeEEEEEECCEEEEEEEe--cccchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHH
Confidence 345577778889988753321 123458999999999997 4799999998888776654
No 206
>PRK09449 dUMP phosphatase; Provisional
Probab=34.00 E-value=56 Score=27.82 Aligned_cols=6 Identities=17% Similarity=0.351 Sum_probs=2.2
Q ss_pred HHHHHH
Q 036329 78 DRMIKA 83 (258)
Q Consensus 78 ~~i~~~ 83 (258)
.++++.
T Consensus 101 ~~~L~~ 106 (224)
T PRK09449 101 VELLNA 106 (224)
T ss_pred HHHHHH
Confidence 333333
No 207
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=33.83 E-value=59 Score=28.72 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=28.7
Q ss_pred cCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 110 FMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
.+-|.+.+.|+.|.+. .+++|+|+.....+...+.
T Consensus 108 ~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~ 143 (248)
T PLN02770 108 KPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMIS 143 (248)
T ss_pred CcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHH
Confidence 4557899999999876 5899999999888877654
No 208
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=33.70 E-value=56 Score=27.43 Aligned_cols=30 Identities=27% Similarity=0.488 Sum_probs=24.2
Q ss_pred HHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 115 MRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 115 ~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
..++|+.|.+. .+++|+||.....+...+.
T Consensus 111 ~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~ 141 (197)
T TIGR01548 111 PKGLLRELHRAPKGMAVVTGRPRKDAAKFLT 141 (197)
T ss_pred HHHHHHHHHHcCCcEEEECCCCHHHHHHHHH
Confidence 36788888776 5899999999988877665
No 209
>PRK14588 tRNA pseudouridine synthase ACD; Provisional
Probab=33.66 E-value=56 Score=29.97 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=36.5
Q ss_pred CEEEEEecCCccCC-CCCCCCCccCCHHHHHHHHHHHhhCCEEEEecCChhhHHH
Q 036329 88 KIAVFLDYDGTLSP-IVDDPNRAFMSDEMRAAVREVAKYFPTAIVSGRSREKVKE 141 (258)
Q Consensus 88 ~~ll~lD~DGTL~~-~~~~p~~~~~~~~~~~aL~~L~~~~~V~IvSGR~~~~l~~ 141 (258)
+.+|.+-||||=.. +...|+...+-.++.++|.+|....--++.+||+-..+.+
T Consensus 3 ~~~l~iaYdGt~f~G~Q~Q~~~~TVq~~Le~aL~~l~~~~i~i~~AgRTDaGVHA 57 (272)
T PRK14588 3 TIALLLEYDGTDFAGSQWQTDGRTVQGALEAAWQALTQERRRIVLAGRTDAGVHA 57 (272)
T ss_pred eEEEEEEEcCCceeeeEECCCCCCHHHHHHHHHHHhhCCCceEEEecCCCcCcCc
Confidence 56788999999874 3434554566777778888876543346778887655443
No 210
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=33.47 E-value=51 Score=26.24 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 113 DEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 113 ~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
+.+.+.|+.|.+. .+++|+|++....+...+.
T Consensus 67 ~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~ 99 (154)
T TIGR01549 67 RGAADLLKRLKEAGIKLGIISNGSLRAQKLLLR 99 (154)
T ss_pred cCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHH
Confidence 5788999999876 5799999999888777654
No 211
>PRK00021 truA tRNA pseudouridine synthase A; Validated
Probab=33.10 E-value=61 Score=28.98 Aligned_cols=54 Identities=28% Similarity=0.367 Sum_probs=37.5
Q ss_pred CEEEEEecCCccCC-CCCCCCCccCCHHHHHHHHHHHhhCCEEEEecCChhhHHH
Q 036329 88 KIAVFLDYDGTLSP-IVDDPNRAFMSDEMRAAVREVAKYFPTAIVSGRSREKVKE 141 (258)
Q Consensus 88 ~~ll~lD~DGTL~~-~~~~p~~~~~~~~~~~aL~~L~~~~~V~IvSGR~~~~l~~ 141 (258)
+.+|.+-||||-.. +...|+...+-.++.++|.++....--++.+||+-..+.+
T Consensus 3 ~~~l~i~YdGt~y~G~q~q~~~~TVq~~le~aL~~~~~~~~~~~~agRTD~GVHA 57 (244)
T PRK00021 3 RIALTIEYDGTNFHGWQRQPNGRTVQGELEKALSKLAGEPVRVIGAGRTDAGVHA 57 (244)
T ss_pred EEEEEEEECCCccceeeeCCCCCCHHHHHHHHHHHHhCCCeEEEEEccCCCcccc
Confidence 56788999999875 5555665567777888888876533246778887655433
No 212
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=32.30 E-value=49 Score=27.46 Aligned_cols=53 Identities=13% Similarity=0.185 Sum_probs=36.0
Q ss_pred EEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhC-CEEEEecCChhhHHHHhc
Q 036329 90 AVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYF-PTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 90 ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~-~V~IvSGR~~~~l~~~~~ 144 (258)
.+++.+++++.-... ....+-+++.++|+.|.+.. +++|+||-.......+..
T Consensus 109 ~~~~~~~~~~~~~~~--~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~ 162 (215)
T PF00702_consen 109 VIVLAVNLIFLGLFG--LRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAK 162 (215)
T ss_dssp CEEEEESHEEEEEEE--EEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHH
T ss_pred ccceeecCeEEEEEe--ecCcchhhhhhhhhhhhccCcceeeeecccccccccccc
Confidence 344444666653211 12245578999999999984 799999998888776654
No 213
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=32.15 E-value=1.5e+02 Score=23.19 Aligned_cols=50 Identities=14% Similarity=0.263 Sum_probs=32.9
Q ss_pred HHHHHHhc-cCCEEEEEec-CCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHh
Q 036329 78 DRMIKAAK-GKKIAVFLDY-DGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFV 143 (258)
Q Consensus 78 ~~i~~~~~-~k~~ll~lD~-DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~ 143 (258)
.++.+.+. .+..++|.|+ -||... . +. ++... .++.++||=+..-+.+.+
T Consensus 48 ~~~i~~~~~~~~viil~Dl~GGSp~n------------~---~~-~~~~~~~~~~visG~nlpmlle~~ 100 (122)
T cd00006 48 KAALAELDSGEGVLILTDLFGGSPNN------------A---AA-RLSMEHPPVEVIAGVNLPMLLEAA 100 (122)
T ss_pred HHHHHHhCCCCcEEEEEeCCCCCHHH------------H---HH-HHHhcCCCEEEEEccCHHHHHHHH
Confidence 44444444 5778999999 888753 1 11 22223 579999999998876654
No 214
>PRK11590 hypothetical protein; Provisional
Probab=31.85 E-value=71 Score=27.44 Aligned_cols=33 Identities=6% Similarity=0.030 Sum_probs=25.9
Q ss_pred CHHHHHHH-HHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 112 SDEMRAAV-REVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 112 ~~~~~~aL-~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
-|.+.+.| +.|.+. ..++|||+.....+..++.
T Consensus 97 ~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~ 131 (211)
T PRK11590 97 FPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYF 131 (211)
T ss_pred CccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHH
Confidence 47888999 567765 4799999999888886654
No 215
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=31.24 E-value=1.5e+02 Score=26.28 Aligned_cols=46 Identities=20% Similarity=0.271 Sum_probs=26.7
Q ss_pred CCEEEEEec--CCccCCCCCCCCCccCCHHHHHHHHHHHhhC-CEEEEec--CChhhHHHHhc
Q 036329 87 KKIAVFLDY--DGTLSPIVDDPNRAFMSDEMRAAVREVAKYF-PTAIVSG--RSREKVKEFVE 144 (258)
Q Consensus 87 k~~ll~lD~--DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~-~V~IvSG--R~~~~l~~~~~ 144 (258)
-..+|+.|+ |||+... .- +.++++++.. .-+|++| |+.+++.+++.
T Consensus 162 ~~~ii~tdi~~dGt~~G~---------~~---~li~~l~~~~~ipvi~~GGi~s~edi~~l~~ 212 (234)
T PRK13587 162 LGGIIYTDIAKDGKMSGP---------NF---ELTGQLVKATTIPVIASGGIRHQQDIQRLAS 212 (234)
T ss_pred CCEEEEecccCcCCCCcc---------CH---HHHHHHHHhCCCCEEEeCCCCCHHHHHHHHH
Confidence 356666666 6777642 12 3444555443 2457777 67777877664
No 216
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=30.92 E-value=1.7e+02 Score=26.50 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=14.7
Q ss_pred hccCCEEEEEecCCccCC
Q 036329 84 AKGKKIAVFLDYDGTLSP 101 (258)
Q Consensus 84 ~~~k~~ll~lD~DGTL~~ 101 (258)
..+...+|+.|.||-+..
T Consensus 167 l~Ad~liilTDVdGVy~~ 184 (266)
T PRK12314 167 VKADLLIILSDIDGLYDK 184 (266)
T ss_pred hCCCEEEEEeCCCcccCC
Confidence 347778889999999975
No 217
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=30.63 E-value=23 Score=30.88 Aligned_cols=45 Identities=7% Similarity=0.190 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHhhCCEEEEecCChhhHH---HHhcc-----cCceEEccCCc
Q 036329 112 SDEMRAAVREVAKYFPTAIVSGRSREKVK---EFVEL-----SNVYYAGSHGM 156 (258)
Q Consensus 112 ~~~~~~aL~~L~~~~~V~IvSGR~~~~l~---~~~~~-----~~l~lig~hG~ 156 (258)
.+.+.+.|..+++..+++-+|.|..+.-+ .++.. ..+-++|-||=
T Consensus 74 ~q~v~~~L~~~~e~~~L~~itar~~dl~~iT~~~l~~q~ih~~~l~i~g~h~K 126 (194)
T COG5663 74 AQLVKQVLPSLKEEHRLIYITARKADLTRITYAWLFIQNIHYDHLEIVGLHHK 126 (194)
T ss_pred HHHHHHHhHHHHhhceeeeeehhhHHHHHHHHHHHHHhccchhhhhhhccccc
Confidence 45566677777777778888988766532 24432 23456777774
No 218
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=30.53 E-value=1.1e+02 Score=26.87 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=35.8
Q ss_pred HhccCCEEEEEecCCccCCC-CCCCCCcc---CCH-HH---------HHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 83 AAKGKKIAVFLDYDGTLSPI-VDDPNRAF---MSD-EM---------RAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 83 ~~~~k~~ll~lD~DGTL~~~-~~~p~~~~---~~~-~~---------~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
...++..+++.|.||-.... ...|+... ++. ++ ..+++-+.+. .+++|++|+..+.+.+++.
T Consensus 146 ~l~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~~~~~~~~~~~~~d~~a~~~a~~~gi~~~I~~g~~~~~l~~~l~ 222 (231)
T cd04254 146 EINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSKGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVK 222 (231)
T ss_pred HcCCCEEEEEeCCCEEEecCCCCCCCcEEeeEecHHHHHhcchhhhHHHHHHHHHHCCCeEEEEeCCCccHHHHHHC
Confidence 34577778889999999742 22232221 111 11 0112222222 4689999999999988774
No 219
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=30.51 E-value=1.7e+02 Score=26.55 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=14.5
Q ss_pred HhccCCEEEEEecCCccC
Q 036329 83 AAKGKKIAVFLDYDGTLS 100 (258)
Q Consensus 83 ~~~~k~~ll~lD~DGTL~ 100 (258)
...+...+++.|.||-..
T Consensus 173 ~l~ad~li~~TdVdGVy~ 190 (262)
T cd04255 173 VIGARNLIFVKDEDGLYT 190 (262)
T ss_pred HhCCCEEEEEeccCeeEC
Confidence 345778888899999997
No 220
>PRK11587 putative phosphatase; Provisional
Probab=29.70 E-value=70 Score=27.38 Aligned_cols=34 Identities=21% Similarity=0.077 Sum_probs=26.4
Q ss_pred cCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHh
Q 036329 110 FMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFV 143 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~ 143 (258)
.+-|.+.+.|+.|.+. .+++|+|+.+...+...+
T Consensus 83 ~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l 117 (218)
T PRK11587 83 TALPGAIALLNHLNKLGIPWAIVTSGSVPVASARH 117 (218)
T ss_pred eeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHH
Confidence 4557899999999876 589999998776555443
No 221
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=29.38 E-value=83 Score=26.22 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=28.3
Q ss_pred cCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 110 FMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
.+.+.+.+.|+.+.+. .+|+|+||.....++.++.
T Consensus 87 ~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~ 122 (202)
T TIGR01490 87 ILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLAR 122 (202)
T ss_pred hccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHH
Confidence 4568999999999887 4799999998877776654
No 222
>COG4996 Predicted phosphatase [General function prediction only]
Probab=28.88 E-value=27 Score=29.37 Aligned_cols=51 Identities=16% Similarity=0.118 Sum_probs=31.5
Q ss_pred EEEEEecCCccCCCCCC-----C--------------CCccCCHHHHHHHHHHHhhCC-EEEEecCChhhH
Q 036329 89 IAVFLDYDGTLSPIVDD-----P--------------NRAFMSDEMRAAVREVAKYFP-TAIVSGRSREKV 139 (258)
Q Consensus 89 ~ll~lD~DGTL~~~~~~-----p--------------~~~~~~~~~~~aL~~L~~~~~-V~IvSGR~~~~l 139 (258)
++|+||.||||.+--+- | ....+-+.+++.|+.+.+... +...|=...+..
T Consensus 1 ~~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA 71 (164)
T COG4996 1 RAIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDKA 71 (164)
T ss_pred CcEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHH
Confidence 47899999999852110 1 123467888888888777643 444454444443
No 223
>PRK14557 pyrH uridylate kinase; Provisional
Probab=28.46 E-value=2.5e+02 Score=25.31 Aligned_cols=60 Identities=10% Similarity=0.143 Sum_probs=34.5
Q ss_pred ccCCEEEE-EecCCccCC-CCCCCCCccCCH----H----HHHHHH----HHHhh--CCEEEEecCChhhHHHHhc
Q 036329 85 KGKKIAVF-LDYDGTLSP-IVDDPNRAFMSD----E----MRAAVR----EVAKY--FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 85 ~~k~~ll~-lD~DGTL~~-~~~~p~~~~~~~----~----~~~aL~----~L~~~--~~V~IvSGR~~~~l~~~~~ 144 (258)
++...+++ -|.||-... ...+|+...++. + -.+.+. +++.. .+|+|++|+....+.+++.
T Consensus 153 ~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~A~~~a~~~gi~v~I~ng~~~~~l~~~l~ 228 (247)
T PRK14557 153 NSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICL 228 (247)
T ss_pred CCCEEEEecCCcCEeECCCCCCCCCCEEeeEEChhhhcccCHHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHc
Confidence 35544455 399999984 222333222211 1 122232 33433 4799999999999988875
No 224
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=28.29 E-value=1.7e+02 Score=30.61 Aligned_cols=61 Identities=21% Similarity=0.408 Sum_probs=36.0
Q ss_pred hccCCEEEEEecCCccCCCCCCCCCcc-------------------------CCHHHHHHHHHHHhhCCEEEEecCChhh
Q 036329 84 AKGKKIAVFLDYDGTLSPIVDDPNRAF-------------------------MSDEMRAAVREVAKYFPTAIVSGRSREK 138 (258)
Q Consensus 84 ~~~k~~ll~lD~DGTL~~~~~~p~~~~-------------------------~~~~~~~aL~~L~~~~~V~IvSGR~~~~ 138 (258)
.++...+++.|.||-+.....+|+... |.+.+..+...+....+|+|++|+..+.
T Consensus 188 l~Ad~li~~TdVdGvy~~~p~~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~~Kl~Aa~~a~~~Gi~v~I~~g~~~~~ 267 (718)
T PLN02418 188 LKADLLILLSDVEGLYTGPPSDPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTAKVKAAVNAASAGIPVVITSGYALDN 267 (718)
T ss_pred cCCCEEEEeecCCeeecCCCCCCCceEcceecccchhhhhhcccccccCCCCcHHHHHHHHHHHHCCCcEEEeCCCCcch
Confidence 347778888999999975322232111 1122222222222224689999998888
Q ss_pred HHHHhc
Q 036329 139 VKEFVE 144 (258)
Q Consensus 139 l~~~~~ 144 (258)
+.+++.
T Consensus 268 l~~~l~ 273 (718)
T PLN02418 268 IRKVLR 273 (718)
T ss_pred HHHHhc
Confidence 888774
No 225
>KOG2924 consensus Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=28.07 E-value=2.5e+02 Score=26.55 Aligned_cols=65 Identities=14% Similarity=0.227 Sum_probs=43.5
Q ss_pred CCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhC--CEEEEecCChh-hHHHHhcccCceEEccCCccccCCC
Q 036329 87 KKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYF--PTAIVSGRSRE-KVKEFVELSNVYYAGSHGMDIQAPP 162 (258)
Q Consensus 87 k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~--~V~IvSGR~~~-~l~~~~~~~~l~lig~hG~~i~~p~ 162 (258)
.+.-|||.|--.|+ +..+++.|+-|.++. .|+|.|+-..+ ++-+-+...-++=+.-.|.++|..+
T Consensus 95 ~~ctIFlGyTSNli-----------SSGlRetirylvqh~mVdviVttaGGvEEDlIKclaPTy~g~F~L~G~~LR~~G 162 (366)
T KOG2924|consen 95 TSCTIFLGYTSNLI-----------SSGLRETIRYLVQHNMVDVIVTTAGGVEEDLIKCLAPTYLGDFSLDGKELRENG 162 (366)
T ss_pred cceEEEEecchhhh-----------hhhHHHHHHHHHHhcceeEEEecCCccHHHHHHHhCccceeeeecChHHHHhhh
Confidence 46678998866665 479999999999874 57777755444 4544444443445566777777643
No 226
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=27.71 E-value=31 Score=34.59 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=12.5
Q ss_pred CCEEEEEecCCccCC
Q 036329 87 KKIAVFLDYDGTLSP 101 (258)
Q Consensus 87 k~~ll~lD~DGTL~~ 101 (258)
.+..+++|+||||+-
T Consensus 7 ~~~~~~fD~DGTLlr 21 (498)
T PLN02499 7 TSYSVVSELEGTLLK 21 (498)
T ss_pred ccceEEEecccceec
Confidence 345699999999996
No 227
>TIGR00321 dhys deoxyhypusine synthase. This family of apparent orthologs has an unusual UPGMA difference tree, in which the members from the archaea M. jannaschii and P. horikoshii cluster with the known eukaryotic deoxyhypusine synthases. Separated by a fairly deep branch, although still strongly related, is a small cluster of proteins from Methanobacterium thermoautotrophicum and Archeoglobus fulgidus, the latter of which has two.
Probab=27.49 E-value=2.7e+02 Score=26.15 Aligned_cols=63 Identities=17% Similarity=0.311 Sum_probs=43.4
Q ss_pred CCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhC--CEEEEecCChh-hHHHHhcccCceEEccCCccccC
Q 036329 87 KKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYF--PTAIVSGRSRE-KVKEFVELSNVYYAGSHGMDIQA 160 (258)
Q Consensus 87 k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~--~V~IvSGR~~~-~l~~~~~~~~l~lig~hG~~i~~ 160 (258)
+..-+||-|=|.+++ .+++..|..|.++. .++|.||-.++ ++-+.+|....+-...++.+++.
T Consensus 44 ~~~~ifLt~tg~mvs-----------aGlr~ii~~Li~~g~Vd~ivtTganl~hD~~~~~g~~~~g~f~~dd~~Lr~ 109 (301)
T TIGR00321 44 EEITIFMGYAGNLVP-----------SGMREIIAYLIQHGMIDALVTTGANLEHDLIEALGPTHLGDFAVDDKKLRE 109 (301)
T ss_pred CCCeEEEEeccccch-----------hhHHHHHHHHHHcCCeeEEEeCCCchHHHHHHHcCcccccCCCCChHHHHH
Confidence 444568888777776 78999999999984 68999999887 56666664433222234555554
No 228
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=27.48 E-value=1.1e+02 Score=26.55 Aligned_cols=18 Identities=17% Similarity=0.128 Sum_probs=14.5
Q ss_pred hccCCEEEEEecCCccCC
Q 036329 84 AKGKKIAVFLDYDGTLSP 101 (258)
Q Consensus 84 ~~~k~~ll~lD~DGTL~~ 101 (258)
..++..+++.|.||-...
T Consensus 128 l~a~~li~~tdVdGVy~~ 145 (221)
T cd04253 128 LGADLLINATNVDGVYSK 145 (221)
T ss_pred cCCCEEEEEeCCCeeECC
Confidence 447778888999999974
No 229
>PRK14558 pyrH uridylate kinase; Provisional
Probab=27.43 E-value=1.7e+02 Score=25.63 Aligned_cols=61 Identities=13% Similarity=0.096 Sum_probs=35.9
Q ss_pred hccCCEEEEEecCCccCCC-CCCCCCccCCH----HHH---------HHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 84 AKGKKIAVFLDYDGTLSPI-VDDPNRAFMSD----EMR---------AAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 84 ~~~k~~ll~lD~DGTL~~~-~~~p~~~~~~~----~~~---------~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
..++..+++.|.||-.... ..+|+...++. ++. .+++-+.+. .+|+|++|+....+.+.+.
T Consensus 145 l~a~~l~~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~gi~v~I~ng~~~~~l~~~l~ 220 (231)
T PRK14558 145 MKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKMGLKVMDTEAFSICKKYGITILVINFFEPGNLLKALK 220 (231)
T ss_pred cCCCEEEEEecCCeeEccCCCCCCCCeEcccccHHHHHHcCcccccHHHHHHHHHCCCCEEEEeCCCCCHHHHHHC
Confidence 3577788889999999742 22333332221 121 122222222 4799999998888877663
No 230
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=27.07 E-value=83 Score=28.33 Aligned_cols=35 Identities=11% Similarity=0.257 Sum_probs=28.0
Q ss_pred cCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 110 FMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
.+.+.+.+.|+.|.+. .+++|+||.+...+...+.
T Consensus 101 ~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~ 136 (272)
T PRK13223 101 VVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLD 136 (272)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHH
Confidence 4557899999999876 5899999998877766554
No 231
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=26.80 E-value=91 Score=28.37 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=28.9
Q ss_pred cCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 110 FMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
.+.|.+.+.|+.|.+. .+++|+|+.....+..++.
T Consensus 144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~ 179 (286)
T PLN02779 144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVN 179 (286)
T ss_pred CchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHH
Confidence 4568999999999987 5899999999888776654
No 232
>PRK12434 tRNA pseudouridine synthase A; Reviewed
Probab=26.52 E-value=98 Score=27.83 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=35.5
Q ss_pred CEEEEEecCCccCC-CCCCCC-CccCCHHHHHHHHHHHhhCCEEEEecCChhhHHH
Q 036329 88 KIAVFLDYDGTLSP-IVDDPN-RAFMSDEMRAAVREVAKYFPTAIVSGRSREKVKE 141 (258)
Q Consensus 88 ~~ll~lD~DGTL~~-~~~~p~-~~~~~~~~~~aL~~L~~~~~V~IvSGR~~~~l~~ 141 (258)
+.+|.+-||||=.. +...|+ ...+-.++.++|.++....--++.+||+-..+..
T Consensus 3 ~~~l~i~YdGt~y~G~Q~Q~~~~~TVq~~le~aL~~~~~~~~~~~~agRTD~GVHA 58 (245)
T PRK12434 3 NIKLTIQYDGSRYKGWQKLGNNDNTIQGKIESVLSEMTGEEIEIIGCGRTDAGVHA 58 (245)
T ss_pred eEEEEEEECCCccceEeeCCCCCCCHHHHHHHHHHHHhCCCeEEEEeccCCCCcCc
Confidence 56788999999775 443343 3456677777888776533356678887655433
No 233
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=26.40 E-value=1.3e+02 Score=26.05 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=34.1
Q ss_pred CCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhC---CEEEEec
Q 036329 87 KKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYF---PTAIVSG 133 (258)
Q Consensus 87 k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~---~V~IvSG 133 (258)
.-+++.||=|.|++- |....+-|..+.-++++.+-+ .++|+|.
T Consensus 42 ~ikavVlDKDNcit~----P~~~~Iwp~~l~~ie~~~~vygek~i~v~SN 87 (190)
T KOG2961|consen 42 GIKAVVLDKDNCITA----PYSLAIWPPLLPSIERCKAVYGEKDIAVFSN 87 (190)
T ss_pred CceEEEEcCCCeeeC----CcccccCchhHHHHHHHHHHhCcccEEEEec
Confidence 567899999999997 555667777788888888864 4889883
No 234
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=26.39 E-value=1.3e+02 Score=29.78 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=28.7
Q ss_pred hhhhhhCCCCCccHHHHHHHhccCCEEEEEecCCccC
Q 036329 64 NSWMVEHPSALDSFDRMIKAAKGKKIAVFLDYDGTLS 100 (258)
Q Consensus 64 ~~w~~~~p~~l~~~~~i~~~~~~k~~ll~lD~DGTL~ 100 (258)
.+|++.+.+.+..|..+.+.|.. ..+++.|.-+|+.
T Consensus 198 Hs~i~a~~~e~~Af~~~~~~~p~-~~i~LvDTyd~~~ 233 (443)
T PRK12484 198 HSFVEAFPDEVAAFRAFARLYPD-ATTLLVDTYDTLR 233 (443)
T ss_pred HHHHHhcccHHHHHHHHHHHCCC-CcEEEEEcCCcHH
Confidence 48988888877788888888764 4588899999866
No 235
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=26.34 E-value=2e+02 Score=26.00 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=15.7
Q ss_pred HhccCCEEEEEecCCccCC
Q 036329 83 AAKGKKIAVFLDYDGTLSP 101 (258)
Q Consensus 83 ~~~~k~~ll~lD~DGTL~~ 101 (258)
..++.+.+++.|.||-+..
T Consensus 189 ~l~A~~li~ltdv~Gv~~~ 207 (279)
T cd04250 189 ALKAEKLILLTDVAGVLDD 207 (279)
T ss_pred HhCCCEEEEEECCcccccC
Confidence 4457888999999999986
No 236
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=26.27 E-value=32 Score=31.37 Aligned_cols=74 Identities=20% Similarity=0.249 Sum_probs=39.8
Q ss_pred HHHHhccCCEEEEEecCCccCCCCCCCCCccCCHHHHH-HHHHHHh-hC--CEEEEecCChhhHHHHhcccCceEEccCC
Q 036329 80 MIKAAKGKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRA-AVREVAK-YF--PTAIVSGRSREKVKEFVELSNVYYAGSHG 155 (258)
Q Consensus 80 i~~~~~~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~-aL~~L~~-~~--~V~IvSGR~~~~l~~~~~~~~l~lig~hG 155 (258)
+.+...+-..+.+||-+|.+.-+..|-.+.---+.++- +| +.. +. .++++|||...++-.-.--.++.++.+.+
T Consensus 152 l~~~TGgvH~aal~~~~g~~l~~~EDIGRHNAvDKviG~al--l~g~~~~~~~l~~SGR~s~emv~Ka~~aGipvivS~s 229 (263)
T PRK00724 152 LFQLTGGVHAAALLCPDGELLAVREDVGRHNALDKLIGAAL--RAGIPLRDGALLVSGRASSEMVQKAAMAGIPILVAVS 229 (263)
T ss_pred hhhccCceeEEEEEcCCCCEEEEEecCchhHHHHHHHHHHH--HcCCCccCcEEEEeCCchHHHHHHHHHcCCcEEEEcc
Confidence 33333455667778888887655544433211122222 12 111 11 38999999888876544334455555544
No 237
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=26.18 E-value=1.3e+02 Score=22.89 Aligned_cols=46 Identities=13% Similarity=0.339 Sum_probs=35.5
Q ss_pred ccCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHh
Q 036329 85 KGKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFV 143 (258)
Q Consensus 85 ~~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~ 143 (258)
.....+|++.+.|.- .++.+.++.+.+. .+|+.+|+..-..+.+..
T Consensus 52 ~~~d~vi~is~sg~~-------------~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~a 98 (131)
T PF01380_consen 52 DPDDLVIIISYSGET-------------RELIELLRFAKERGAPVILITSNSESPLARLA 98 (131)
T ss_dssp STTEEEEEEESSSTT-------------HHHHHHHHHHHHTTSEEEEEESSTTSHHHHHS
T ss_pred cccceeEeeeccccc-------------hhhhhhhHHHHhcCCeEEEEeCCCCCchhhhC
Confidence 356677888877732 6889999987776 479999999888887766
No 238
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=25.73 E-value=36 Score=33.91 Aligned_cols=57 Identities=14% Similarity=0.239 Sum_probs=29.9
Q ss_pred ccCCEEEEEecCCccCCCCCC------CCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHH
Q 036329 85 KGKKIAVFLDYDGTLSPIVDD------PNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKE 141 (258)
Q Consensus 85 ~~k~~ll~lD~DGTL~~~~~~------p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~ 141 (258)
+....++++|+||||+.-..- -..-.-+-.+...--++.++ +.|.-.|.|+...+..
T Consensus 372 r~n~kiVVsDiDGTITkSD~~Ghv~~miGkdwth~gVAkLYtdI~rNGYkI~YltsR~~Gqa~s 435 (580)
T COG5083 372 RNNKKIVVSDIDGTITKSDALGHVKQMIGKDWTHNGVAKLYTDIDRNGYKIKYLTSRSYGQADS 435 (580)
T ss_pred eCCCcEEEEecCCcEEehhhHHHHHHHhccchhhcchhhhhhhhccCceEEEEEecccccchhh
Confidence 345678899999999962100 00000112222222233323 2567778888877654
No 239
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=25.54 E-value=1.4e+02 Score=21.33 Aligned_cols=26 Identities=15% Similarity=0.171 Sum_probs=11.9
Q ss_pred CCccHHHHHHHhc-cCCEEEEEecCCc
Q 036329 73 ALDSFDRMIKAAK-GKKIAVFLDYDGT 98 (258)
Q Consensus 73 ~l~~~~~i~~~~~-~k~~ll~lD~DGT 98 (258)
.+..+..+...+. ..-.++.+++|+.
T Consensus 37 ~~~~l~~~~~~~~~~~~~~~~v~~d~~ 63 (116)
T cd02966 37 EMPELEALAKEYKDDGVEVVGVNVDDD 63 (116)
T ss_pred HhHHHHHHHHHhCCCCeEEEEEECCCC
Confidence 3344444444443 2334555555543
No 240
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=25.39 E-value=2.1e+02 Score=24.82 Aligned_cols=18 Identities=17% Similarity=0.218 Sum_probs=14.4
Q ss_pred hccCCEEEEEecCCccCC
Q 036329 84 AKGKKIAVFLDYDGTLSP 101 (258)
Q Consensus 84 ~~~k~~ll~lD~DGTL~~ 101 (258)
.+++..+++.|.||-...
T Consensus 128 l~A~~li~ltdVdGvy~~ 145 (221)
T TIGR02076 128 SKADLLINATNVDGVYDK 145 (221)
T ss_pred cCCCEEEEEeCCCcccCC
Confidence 457778888999999964
No 241
>PRK00942 acetylglutamate kinase; Provisional
Probab=25.13 E-value=2.4e+02 Score=25.53 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=14.7
Q ss_pred HhccCCEEEEEecCCccCC
Q 036329 83 AAKGKKIAVFLDYDGTLSP 101 (258)
Q Consensus 83 ~~~~k~~ll~lD~DGTL~~ 101 (258)
...+.+.+++.|.||-+..
T Consensus 193 ~l~A~~li~~tdv~Gv~~~ 211 (283)
T PRK00942 193 ALGAEKLILLTDVPGVLDD 211 (283)
T ss_pred HcCCCEEEEEECCcccccC
Confidence 3457788888999998864
No 242
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=24.96 E-value=48 Score=30.05 Aligned_cols=16 Identities=38% Similarity=0.358 Sum_probs=13.4
Q ss_pred CCEEEEEecCCccCCC
Q 036329 87 KKIAVFLDYDGTLSPI 102 (258)
Q Consensus 87 k~~ll~lD~DGTL~~~ 102 (258)
+-++++||++|||...
T Consensus 6 ~iravtfD~~~tLl~~ 21 (237)
T KOG3085|consen 6 RIRAVTFDAGGTLLAT 21 (237)
T ss_pred ceEEEEEeCCCceeec
Confidence 4579999999999863
No 243
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=24.85 E-value=1e+02 Score=24.81 Aligned_cols=29 Identities=7% Similarity=0.059 Sum_probs=24.3
Q ss_pred cCCHHHHHHHHHHHhh-CCEEEEecCChhh
Q 036329 110 FMSDEMRAAVREVAKY-FPTAIVSGRSREK 138 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~ 138 (258)
.+.+.+.++|+.|.+. .+++|+|+.....
T Consensus 85 ~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~ 114 (183)
T TIGR01509 85 KPLPGVEPLLEALRARGKKLALLTNSPRDH 114 (183)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEeCCchHH
Confidence 4568999999999886 5799999988766
No 244
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=24.59 E-value=1e+02 Score=26.76 Aligned_cols=14 Identities=50% Similarity=0.572 Sum_probs=12.1
Q ss_pred CEEEEEecCCccCC
Q 036329 88 KIAVFLDYDGTLSP 101 (258)
Q Consensus 88 ~~ll~lD~DGTL~~ 101 (258)
.++++||+||||++
T Consensus 10 ~k~vIFDlDGTL~d 23 (224)
T PRK14988 10 VDTVLLDMDGTLLD 23 (224)
T ss_pred CCEEEEcCCCCccc
Confidence 45799999999998
No 245
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=24.45 E-value=3.7e+02 Score=23.36 Aligned_cols=47 Identities=11% Similarity=0.182 Sum_probs=36.6
Q ss_pred ccCCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhC-CEEEEecCChhhHHHHhc
Q 036329 85 KGKKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYF-PTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 85 ~~k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~-~V~IvSGR~~~~l~~~~~ 144 (258)
.....+|++.+.|. ++.+.++++.+.+.. +|+.+||..-..+.++++
T Consensus 108 ~~gDvli~iS~SG~-------------s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~~ 155 (196)
T PRK10886 108 HAGDVLLAISTRGN-------------SRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLG 155 (196)
T ss_pred CCCCEEEEEeCCCC-------------CHHHHHHHHHHHHCCCEEEEEeCCCCChhhhccc
Confidence 46678888888775 368888888887764 789999988888777654
No 246
>PRK03971 putative deoxyhypusine synthase; Provisional
Probab=24.12 E-value=2.3e+02 Score=27.01 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=43.1
Q ss_pred CCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhC--CEEEEecCChh-hHHHHhcccCceEEccCCccccCC
Q 036329 87 KKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYF--PTAIVSGRSRE-KVKEFVELSNVYYAGSHGMDIQAP 161 (258)
Q Consensus 87 k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~--~V~IvSGR~~~-~l~~~~~~~~l~lig~hG~~i~~p 161 (258)
+..-+||-|=|.+++ .+++++|..|.++. .++|.||-.++ ++-+.++....+-...+|.+++..
T Consensus 65 ~~~~ifL~~tg~mis-----------aGlr~~i~~Li~~~~Vd~iVtTganlehDi~~~l~~~~~G~f~~dd~~Lr~~ 131 (334)
T PRK03971 65 EEATVFLGYTSNIVS-----------SGLREIIAYLVKEKKVDVIVTTAGGVEEDFIKCLKPFILGEWDVDGAELREK 131 (334)
T ss_pred CCCeEEEEccccccc-----------hhHHHHHHHHHHcCCeeEEEeCCCchHHHHHHHhcccccCCCCCCHHHHHHc
Confidence 445568888777776 78999999999984 68999999887 555555521122223345555543
No 247
>PRK14586 tRNA pseudouridine synthase ACD; Provisional
Probab=23.68 E-value=1.1e+02 Score=27.60 Aligned_cols=53 Identities=19% Similarity=0.266 Sum_probs=35.1
Q ss_pred CEEEEEecCCccCC-CCCCCCCccCCHHHHHHHHHHHhhCCEEEEecCChhhHH
Q 036329 88 KIAVFLDYDGTLSP-IVDDPNRAFMSDEMRAAVREVAKYFPTAIVSGRSREKVK 140 (258)
Q Consensus 88 ~~ll~lD~DGTL~~-~~~~p~~~~~~~~~~~aL~~L~~~~~V~IvSGR~~~~l~ 140 (258)
+.++.+-||||=.. +...|+...+-.++.++|.++....--++.+||+-..+.
T Consensus 3 ~~~l~i~YdGt~f~G~Q~Q~~~~TVq~~le~aL~~~~~~~i~~~~agRTD~GVH 56 (245)
T PRK14586 3 RVAAVVSYDGSNFFGYQGQPDVRTVQGVFEDALERIFKQRIYTQAAGRTDTGVH 56 (245)
T ss_pred EEEEEEEEcCCceeeEEECCCCCCHHHHHHHHHHHHhCCCeeEEEecCCccCCC
Confidence 56788999999653 444455556677778888887643324567888655443
No 248
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=23.56 E-value=94 Score=26.01 Aligned_cols=13 Identities=23% Similarity=0.276 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhh
Q 036329 113 DEMRAAVREVAKY 125 (258)
Q Consensus 113 ~~~~~aL~~L~~~ 125 (258)
.++.++|+++.++
T Consensus 25 ~~l~~~l~~a~~d 37 (177)
T cd07014 25 DTTAAQIRDARLD 37 (177)
T ss_pred HHHHHHHHHHhcC
Confidence 3444444444444
No 249
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=23.53 E-value=1.8e+02 Score=25.58 Aligned_cols=61 Identities=10% Similarity=0.082 Sum_probs=35.3
Q ss_pred hccCCEEEEEe-cCCccCCC-CCCCCCccCCH-----------HH--HHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 84 AKGKKIAVFLD-YDGTLSPI-VDDPNRAFMSD-----------EM--RAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 84 ~~~k~~ll~lD-~DGTL~~~-~~~p~~~~~~~-----------~~--~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
..++..+++.| .||-.... ...|+...++. .. ..+++-+.+. .+|+|++|+..+.+.+++.
T Consensus 148 l~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~~~e~~~~~~~~~d~~~~~~a~~~~i~v~i~~g~~~~~l~~~l~ 224 (233)
T TIGR02075 148 INADVILKGTNGVDGVYTADPKKNKDAKKYETITYNEALKKNLKVMDLTAFALARDNNLPIVVFNIDEPGALKKVIL 224 (233)
T ss_pred cCCCEEEEeecccCeEEcCCCCCCCCCeECcEecHHHHHhcCHHHHHHHHHHHHHHCCCeEEEEeCCCcchHHHHHC
Confidence 45777788899 99998742 11232221111 01 1122222222 4689999999998888774
No 250
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=23.13 E-value=1.2e+02 Score=28.86 Aligned_cols=42 Identities=21% Similarity=0.491 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhCCEEEEecCChhhHHHHhcccCc--eEEccCCc
Q 036329 115 MRAAVREVAKYFPTAIVSGRSREKVKEFVELSNV--YYAGSHGM 156 (258)
Q Consensus 115 ~~~aL~~L~~~~~V~IvSGR~~~~l~~~~~~~~l--~lig~hG~ 156 (258)
-+.++++|.+...=++||.|+.+.+.+++...++ ..+|.||.
T Consensus 16 Fk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g~ 59 (335)
T PF04007_consen 16 FKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHGD 59 (335)
T ss_pred HHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCCC
Confidence 3456778887766568888888888887775554 35678773
No 251
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=22.92 E-value=1.1e+02 Score=26.94 Aligned_cols=35 Identities=14% Similarity=0.111 Sum_probs=27.7
Q ss_pred cCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 110 FMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
.+.+++.++|++|.+. .+++|+|..+......+++
T Consensus 95 ~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~ 130 (220)
T TIGR01691 95 HLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFG 130 (220)
T ss_pred CcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHh
Confidence 4557899999999887 4799999998876666554
No 252
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=22.76 E-value=3.8e+02 Score=23.70 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=13.3
Q ss_pred HhccCCEEEEEecCCccCC
Q 036329 83 AAKGKKIAVFLDYDGTLSP 101 (258)
Q Consensus 83 ~~~~k~~ll~lD~DGTL~~ 101 (258)
+.+++ .+++.|.||.+..
T Consensus 167 ~l~A~-~i~ltdv~Gv~~~ 184 (252)
T cd04249 167 LLNAD-LVLLSDVSGVLDA 184 (252)
T ss_pred HcCCC-EEEEeCCcccCCC
Confidence 34465 7889999998863
No 253
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=22.62 E-value=2.7e+02 Score=24.59 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=14.5
Q ss_pred hccCCEEEEEecCCccCC
Q 036329 84 AKGKKIAVFLDYDGTLSP 101 (258)
Q Consensus 84 ~~~k~~ll~lD~DGTL~~ 101 (258)
..+.+.+++.|.||-+..
T Consensus 160 l~A~~li~ltdv~Gv~~~ 177 (252)
T cd04241 160 LKPERVIFLTDVDGVYDK 177 (252)
T ss_pred cCCCEEEEEeCCCeeECC
Confidence 346778888999999975
No 254
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=22.53 E-value=2.3e+02 Score=29.87 Aligned_cols=55 Identities=16% Similarity=0.303 Sum_probs=40.6
Q ss_pred CCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhC-CEEEEecCChhhHHHHh
Q 036329 87 KKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYF-PTAIVSGRSREKVKEFV 143 (258)
Q Consensus 87 k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~-~V~IvSGR~~~~l~~~~ 143 (258)
.+.++++-.||.+.-.-.- ...+-++..+++++|.+.. +++++||=.....+.+-
T Consensus 516 G~t~v~va~dg~~~g~i~~--~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA 571 (713)
T COG2217 516 GKTVVFVAVDGKLVGVIAL--ADELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIA 571 (713)
T ss_pred CCeEEEEEECCEEEEEEEE--eCCCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Confidence 3448999999977752211 1134589999999999984 79999998888776654
No 255
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=21.93 E-value=1.9e+02 Score=30.89 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=39.9
Q ss_pred cCCEEEEEecCC-----ccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 86 GKKIAVFLDYDG-----TLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 86 ~k~~ll~lD~DG-----TL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
...|.+++=|++ |++-... -.-.+-+++.++|++|.+. .+|+++||-.......+..
T Consensus 501 ~G~rvl~~A~~~~~~~l~~lGli~--l~Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~ 563 (884)
T TIGR01522 501 AGLRVIAFASGPEKGQLTFLGLVG--INDPPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIAR 563 (884)
T ss_pred cCCEEEEEEEEcCCCCeEEEEEEe--ccCcchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHH
Confidence 445777777765 4443221 1123558999999999987 4899999999988877654
No 256
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=21.69 E-value=1.3e+02 Score=24.87 Aligned_cols=33 Identities=12% Similarity=0.137 Sum_probs=26.8
Q ss_pred cCCHHHHHHHHHHHhhCCEEEEecCChhhHHHHhc
Q 036329 110 FMSDEMRAAVREVAKYFPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~~~V~IvSGR~~~~l~~~~~ 144 (258)
.+.+.+.++|++|. .+++|+|+.+...+...+.
T Consensus 84 ~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~ 116 (184)
T TIGR01993 84 KPDPELRNLLLRLP--GRKIIFTNGDRAHARRALN 116 (184)
T ss_pred CCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHH
Confidence 45688999999997 4799999998888777664
No 257
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=21.57 E-value=1.9e+02 Score=25.09 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=15.4
Q ss_pred HhccCCEEEEEecCCccCC
Q 036329 83 AAKGKKIAVFLDYDGTLSP 101 (258)
Q Consensus 83 ~~~~k~~ll~lD~DGTL~~ 101 (258)
..++++.+++.|.||-+..
T Consensus 162 ~l~A~~li~~tdV~Gv~~~ 180 (248)
T cd02115 162 ALKADRLVILTDVDGVYTA 180 (248)
T ss_pred HcCCCEEEEEecCCeeecC
Confidence 3457888899999999974
No 258
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=21.54 E-value=1.1e+02 Score=33.20 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=30.0
Q ss_pred cCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 110 FMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
.+-+++.+++++|.+. ..|+++|||....+..+..
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~ 603 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAK 603 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHH
Confidence 3568999999999998 4899999999999877664
No 259
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=21.53 E-value=1.2e+02 Score=27.62 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=33.6
Q ss_pred CCEEEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhh-CCEEEEe---cCChhhHHHH
Q 036329 87 KKIAVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKY-FPTAIVS---GRSREKVKEF 142 (258)
Q Consensus 87 k~~ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~-~~V~IvS---GR~~~~l~~~ 142 (258)
+-+-+++|+-|||-.- ...-|...+||++|... ..|=.+| +.+...+.+.
T Consensus 6 ~v~gvLlDlSGtLh~e------~~avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~r 59 (262)
T KOG3040|consen 6 AVKGVLLDLSGTLHIE------DAAVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHER 59 (262)
T ss_pred ccceEEEeccceEecc------cccCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHH
Confidence 3456899999999862 22446788999999965 4555555 4555555444
No 260
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=21.27 E-value=1.7e+02 Score=23.98 Aligned_cols=29 Identities=14% Similarity=0.167 Sum_probs=23.3
Q ss_pred HHHHHHHHhhCCEEEEecCChhhHHHHhc
Q 036329 116 RAAVREVAKYFPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 116 ~~aL~~L~~~~~V~IvSGR~~~~l~~~~~ 144 (258)
.+.|..|.+..+++|+||.....+...+.
T Consensus 93 ~e~L~~L~~~~~l~I~T~~~~~~~~~~l~ 121 (188)
T PRK10725 93 IEVVKAWHGRRPMAVGTGSESAIAEALLA 121 (188)
T ss_pred HHHHHHHHhCCCEEEEcCCchHHHHHHHH
Confidence 57888887667899999998888777654
No 261
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=21.13 E-value=3e+02 Score=26.17 Aligned_cols=61 Identities=21% Similarity=0.349 Sum_probs=35.0
Q ss_pred hccCCEEEEEecCCccCCC-CCCCCCcc---CC---HHH-------------------HHHHHHHHhh-CCEEEEecCCh
Q 036329 84 AKGKKIAVFLDYDGTLSPI-VDDPNRAF---MS---DEM-------------------RAAVREVAKY-FPTAIVSGRSR 136 (258)
Q Consensus 84 ~~~k~~ll~lD~DGTL~~~-~~~p~~~~---~~---~~~-------------------~~aL~~L~~~-~~V~IvSGR~~ 136 (258)
..+...+++.|.||-.... ..+|+... ++ ++. +++.....+. .+++|++|+..
T Consensus 156 l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~ 235 (363)
T TIGR01027 156 VGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMRTKLQAADLATRAGVPVIIASGSKP 235 (363)
T ss_pred cCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCchHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 3477788899999999742 22332221 11 111 1122222222 46899999988
Q ss_pred hhHHHHhc
Q 036329 137 EKVKEFVE 144 (258)
Q Consensus 137 ~~l~~~~~ 144 (258)
..+.+++.
T Consensus 236 ~~l~~~l~ 243 (363)
T TIGR01027 236 EKIADALE 243 (363)
T ss_pred cHHHHHhc
Confidence 88877774
No 262
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=21.10 E-value=1.5e+02 Score=25.73 Aligned_cols=15 Identities=47% Similarity=0.751 Sum_probs=13.0
Q ss_pred CCEEEEEecCCccCC
Q 036329 87 KKIAVFLDYDGTLSP 101 (258)
Q Consensus 87 k~~ll~lD~DGTL~~ 101 (258)
.+++.+|||||||+.
T Consensus 4 ~~~la~FDfDgTLt~ 18 (210)
T TIGR01545 4 AKRIIFFDLDGTLHQ 18 (210)
T ss_pred cCcEEEEcCCCCCcc
Confidence 567899999999995
No 263
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=21.06 E-value=1.2e+02 Score=29.46 Aligned_cols=36 Identities=11% Similarity=0.125 Sum_probs=30.1
Q ss_pred ccCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 109 AFMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 109 ~~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
..+-|.+.+.|+.|.+. .+++|+|+.....+...+.
T Consensus 329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~ 365 (459)
T PRK06698 329 GALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVS 365 (459)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHH
Confidence 34567999999999877 5799999999999888765
No 264
>PRK05279 N-acetylglutamate synthase; Validated
Probab=21.04 E-value=2.9e+02 Score=26.74 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=32.3
Q ss_pred HHhccCCEEEEEecCCccCCCCC---C--C-----------C---CccCCHHHHHHHHHHHhhC-CEEEEecCChhhHHH
Q 036329 82 KAAKGKKIAVFLDYDGTLSPIVD---D--P-----------N---RAFMSDEMRAAVREVAKYF-PTAIVSGRSREKVKE 141 (258)
Q Consensus 82 ~~~~~k~~ll~lD~DGTL~~~~~---~--p-----------~---~~~~~~~~~~aL~~L~~~~-~V~IvSGR~~~~l~~ 141 (258)
...++.+.+++.|.||.+-+... . + . ..-|-+.+..+++.+.... .|.|++|+..+.+..
T Consensus 198 ~~l~a~~lv~ltdv~GV~~~~~~~i~~i~~~~~~~~~~~~~~~~~~ggM~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~ 277 (441)
T PRK05279 198 IALKADKLIFFTESQGVLDEDGELIRELSPNEAQALLEALEDGDYNSGTARFLRAAVKACRGGVRRSHLISYAEDGALLQ 277 (441)
T ss_pred HHcCCCEEEEEECCCCccCCCCchhhhCCHHHHHHHHhhhhcCCCCccHHHHHHHHHHHHHcCCCEEEEecCCCCcHHHH
Confidence 34457788888999988843110 0 0 0 1122333444444444443 477788876665543
No 265
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=21.03 E-value=1.5e+02 Score=25.83 Aligned_cols=13 Identities=15% Similarity=0.250 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHhh
Q 036329 113 DEMRAAVREVAKY 125 (258)
Q Consensus 113 ~~~~~aL~~L~~~ 125 (258)
.++.++|++++++
T Consensus 32 ~~l~~~l~~a~~d 44 (222)
T cd07018 32 RDLLEALEKAAED 44 (222)
T ss_pred HHHHHHHHHHhcC
Confidence 3444444444444
No 266
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=21.01 E-value=2e+02 Score=24.01 Aligned_cols=50 Identities=20% Similarity=0.199 Sum_probs=27.2
Q ss_pred CEEEEEecCCccCCCC---CCCCCccCCHHHHHHHHHHHhh--CCEEEEecCChh
Q 036329 88 KIAVFLDYDGTLSPIV---DDPNRAFMSDEMRAAVREVAKY--FPTAIVSGRSRE 137 (258)
Q Consensus 88 ~~ll~lD~DGTL~~~~---~~p~~~~~~~~~~~aL~~L~~~--~~V~IvSGR~~~ 137 (258)
-...++|-+|.+.... .+.....-...-.+.|.++... +.|++|+|-+.+
T Consensus 21 ~~~v~ld~~G~v~d~~~~~~~~~~~~~~~~~~~~l~~~i~~~kP~vI~v~g~~~~ 75 (150)
T PF14639_consen 21 VFCVVLDENGEVLDHLKLVYNERDRERKEEDMERLKKFIEKHKPDVIAVGGNSRE 75 (150)
T ss_dssp EEEEEE-TTS-EEEEEEE-S-TT-SS-SHHHHHHHHHHHHHH--SEEEE--SSTH
T ss_pred EEEEEECCCCcEEEEEEEcCCccchHHHHHHHHHHHHHHHHcCCeEEEEcCCChh
Confidence 4677899999998632 2222333345666667777665 568888876554
No 267
>PLN02811 hydrolase
Probab=20.82 E-value=1.5e+02 Score=25.30 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=24.4
Q ss_pred cCCHHHHHHHHHHHhh-CCEEEEecCChhhHH
Q 036329 110 FMSDEMRAAVREVAKY-FPTAIVSGRSREKVK 140 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~ 140 (258)
.+-+.+.+.|+.|.+. .+++|+||.....+.
T Consensus 78 ~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~ 109 (220)
T PLN02811 78 DLMPGAERLVRHLHAKGIPIAIATGSHKRHFD 109 (220)
T ss_pred CCCccHHHHHHHHHHCCCcEEEEeCCchhhHH
Confidence 3457899999999886 589999998776443
No 268
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=20.67 E-value=99 Score=25.85 Aligned_cols=47 Identities=26% Similarity=0.370 Sum_probs=29.6
Q ss_pred EEEEecCCccCCCCCCCCCccCCHHHHHHHHHHHhhC-CEEEEecC--ChhhHHH
Q 036329 90 AVFLDYDGTLSPIVDDPNRAFMSDEMRAAVREVAKYF-PTAIVSGR--SREKVKE 141 (258)
Q Consensus 90 ll~lD~DGTL~~~~~~p~~~~~~~~~~~aL~~L~~~~-~V~IvSGR--~~~~l~~ 141 (258)
+-++|+||.|+...... .++ .-+.++.+.+.. +|+|+|-- ..+.+++
T Consensus 45 iAildL~G~~l~l~S~R---~~~--~~evi~~I~~~G~PviVAtDV~p~P~~V~K 94 (138)
T PF04312_consen 45 IAILDLDGELLDLKSSR---NMS--RSEVIEWISEYGKPVIVATDVSPPPETVKK 94 (138)
T ss_pred EEEEecCCcEEEEEeec---CCC--HHHHHHHHHHcCCEEEEEecCCCCcHHHHH
Confidence 45699999999754422 222 336777777775 68888843 3344444
No 269
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=20.36 E-value=1.2e+02 Score=26.23 Aligned_cols=35 Identities=9% Similarity=0.081 Sum_probs=27.2
Q ss_pred cCCHHHHHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 110 FMSDEMRAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
.+.|.+.+.|+.|.+. ..++|+|+.+...+...+.
T Consensus 95 ~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~ 130 (229)
T PRK13226 95 QLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILP 130 (229)
T ss_pred eeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHH
Confidence 3457889999999887 4799999998877665543
No 270
>PRK14556 pyrH uridylate kinase; Provisional
Probab=20.19 E-value=2.5e+02 Score=25.55 Aligned_cols=60 Identities=8% Similarity=0.101 Sum_probs=36.7
Q ss_pred ccCCEEEEEecCCccCC-CCCCCCCcc---CC------HHH----HHHHHHHHhh-CCEEEEecCChhhHHHHhc
Q 036329 85 KGKKIAVFLDYDGTLSP-IVDDPNRAF---MS------DEM----RAAVREVAKY-FPTAIVSGRSREKVKEFVE 144 (258)
Q Consensus 85 ~~k~~ll~lD~DGTL~~-~~~~p~~~~---~~------~~~----~~aL~~L~~~-~~V~IvSGR~~~~l~~~~~ 144 (258)
++...+++.|.||--.. ...+|+... ++ .+. ..+++.+.+. .+++|++|+....+.+++.
T Consensus 164 ~Ad~Lii~TdVDGVYd~DP~~~p~A~~i~~I~~~e~~~~~l~vmd~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~ 238 (249)
T PRK14556 164 GADALLKATTVNGVYDKDPNKYSDAKRFDKVTFSEVVSKELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVL 238 (249)
T ss_pred CCCEEEEEeCCCccCCCCCCCCCCceEeeEEchhhhcccchHhHHHHHHHHHHHCCCcEEEECCCCchHHHHHHc
Confidence 46677777899999863 222333221 11 110 1344444443 4799999999999988774
No 271
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=20.17 E-value=1.1e+02 Score=24.06 Aligned_cols=47 Identities=17% Similarity=0.181 Sum_probs=31.1
Q ss_pred cCCHHHHHHHHHHHhhC--CEEEEecCChhhHHHHhcccCceEEccCCc
Q 036329 110 FMSDEMRAAVREVAKYF--PTAIVSGRSREKVKEFVELSNVYYAGSHGM 156 (258)
Q Consensus 110 ~~~~~~~~aL~~L~~~~--~V~IvSGR~~~~l~~~~~~~~l~lig~hG~ 156 (258)
.+++.+.+.|+++.+.. .|++.+|-...++.+...-.++.++|.|-+
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~~g~~~~~~~~~a~~~gi~vigp~C~ 111 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQPGAESEELIEAAREAGIRVIGPNCL 111 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE-TTS--HHHHHHHHHTT-EEEESS-H
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEEcchHHHHHHHHHHHcCCEEEeCCcc
Confidence 35678888999998873 499999977777777776666777776543
Done!