BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036330
         (187 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1W36|D Chain D, Recbcd:dna Complex
 pdb|1W36|G Chain G, Recbcd:dna Complex
 pdb|3K70|D Chain D, Crystal Structure Of The Complete Initiation Complex Of
           Recbcd
 pdb|3K70|G Chain G, Crystal Structure Of The Complete Initiation Complex Of
           Recbcd
          Length = 608

 Score = 27.7 bits (60), Expect = 3.9,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 34  ERTALLEIKRFFIAVRDTGYKDEILTSWVDDEM---SDCCRWEQVKCVNATTRRVKELS 89
           ERT    + RFF  V      DE L +   D++   SD   W++V    A TRR+  +S
Sbjct: 116 ERT----VARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVIS 170


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.141    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,718,827
Number of Sequences: 62578
Number of extensions: 150744
Number of successful extensions: 375
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 371
Number of HSP's gapped (non-prelim): 10
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)