Query 036330
Match_columns 187
No_of_seqs 284 out of 2701
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 11:34:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036330.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036330hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 3.6E-19 7.9E-24 165.4 13.9 142 31-182 27-206 (968)
2 PLN03150 hypothetical protein; 99.8 7.4E-19 1.6E-23 156.7 12.1 135 28-183 367-509 (623)
3 PLN00113 leucine-rich repeat r 99.3 3.9E-12 8.6E-17 118.6 6.5 75 107-186 519-593 (968)
4 PF13855 LRR_8: Leucine rich r 99.0 1.8E-10 3.9E-15 72.3 2.8 61 111-176 1-61 (61)
5 PF08263 LRRNT_2: Leucine rich 99.0 6.4E-10 1.4E-14 65.0 4.4 42 32-78 2-43 (43)
6 PLN03150 hypothetical protein; 99.0 1E-09 2.2E-14 98.4 6.9 91 83-182 442-533 (623)
7 KOG0617 Ras suppressor protein 98.9 5.4E-11 1.2E-15 89.5 -2.4 92 82-185 32-124 (264)
8 PF14580 LRR_9: Leucine-rich r 98.7 3E-08 6.5E-13 75.3 4.6 82 84-177 43-126 (175)
9 PF13855 LRR_8: Leucine rich r 98.6 3.4E-08 7.3E-13 61.8 3.9 60 84-152 2-61 (61)
10 PF12799 LRR_4: Leucine Rich r 98.5 6.7E-08 1.5E-12 56.7 3.0 36 141-177 2-37 (44)
11 KOG0472 Leucine-rich repeat pr 98.5 3.7E-08 8.1E-13 82.6 2.4 91 84-183 436-545 (565)
12 KOG0617 Ras suppressor protein 98.5 1.3E-08 2.8E-13 76.8 -0.5 78 105-184 96-192 (264)
13 PF14580 LRR_9: Leucine-rich r 98.5 1E-07 2.2E-12 72.4 4.1 80 84-177 20-101 (175)
14 KOG0444 Cytoskeletal regulator 98.4 1.1E-07 2.3E-12 84.0 1.1 87 85-177 128-258 (1255)
15 PRK15387 E3 ubiquitin-protein 98.4 4.2E-07 9.2E-12 83.0 4.8 42 140-182 422-463 (788)
16 KOG4194 Membrane glycoprotein 98.3 2.4E-07 5.2E-12 81.0 2.7 91 82-177 124-234 (873)
17 KOG0472 Leucine-rich repeat pr 98.3 8.6E-08 1.9E-12 80.5 -0.8 95 84-185 389-525 (565)
18 KOG0618 Serine/threonine phosp 98.3 7.3E-08 1.6E-12 87.6 -1.3 83 83-177 383-465 (1081)
19 KOG4194 Membrane glycoprotein 98.3 2.2E-07 4.7E-12 81.3 1.0 83 84-175 270-352 (873)
20 PRK15370 E3 ubiquitin-protein 98.3 1.2E-05 2.6E-10 73.6 12.2 41 23-72 53-97 (754)
21 PF12799 LRR_4: Leucine Rich r 98.3 1.1E-06 2.3E-11 51.5 3.3 40 111-157 1-40 (44)
22 KOG0444 Cytoskeletal regulator 98.2 2.6E-07 5.6E-12 81.6 -0.7 71 107-183 74-144 (1255)
23 KOG0618 Serine/threonine phosp 98.1 7.5E-07 1.6E-11 81.2 1.1 86 84-182 46-131 (1081)
24 KOG4579 Leucine-rich repeat (L 98.1 4.7E-07 1E-11 65.9 -0.9 90 82-183 52-141 (177)
25 KOG4237 Extracellular matrix p 98.1 8.9E-07 1.9E-11 74.2 0.2 85 83-177 67-153 (498)
26 cd00116 LRR_RI Leucine-rich re 98.0 1.9E-06 4.1E-11 70.3 1.7 64 109-177 163-234 (319)
27 PLN03210 Resistant to P. syrin 97.9 2.6E-05 5.7E-10 74.7 7.7 88 84-182 612-699 (1153)
28 PLN03210 Resistant to P. syrin 97.9 2.6E-05 5.7E-10 74.7 6.9 88 83-181 634-721 (1153)
29 cd00116 LRR_RI Leucine-rich re 97.9 4E-06 8.8E-11 68.4 0.9 66 111-177 137-206 (319)
30 KOG4237 Extracellular matrix p 97.9 8E-06 1.7E-10 68.6 2.3 85 86-183 49-134 (498)
31 PRK15387 E3 ubiquitin-protein 97.8 4.2E-05 9.1E-10 70.2 6.7 13 165-177 343-355 (788)
32 PRK15370 E3 ubiquitin-protein 97.8 2.8E-05 6.1E-10 71.2 5.6 37 141-181 263-299 (754)
33 KOG1259 Nischarin, modulator o 97.8 7.5E-06 1.6E-10 66.9 0.7 82 84-177 285-387 (490)
34 COG4886 Leucine-rich repeat (L 97.8 2E-05 4.3E-10 66.7 3.3 87 84-183 117-204 (394)
35 KOG4658 Apoptotic ATPase [Sign 97.5 3E-05 6.6E-10 72.1 1.3 87 84-180 546-634 (889)
36 KOG4579 Leucine-rich repeat (L 97.5 1.9E-05 4.2E-10 57.6 -0.4 64 107-177 49-113 (177)
37 KOG1259 Nischarin, modulator o 97.5 4.2E-05 9E-10 62.6 1.0 60 110-177 283-342 (490)
38 KOG1859 Leucine-rich repeat pr 97.4 1.2E-05 2.6E-10 72.2 -2.4 81 84-178 188-268 (1096)
39 COG4886 Leucine-rich repeat (L 97.3 0.00017 3.7E-09 61.0 3.1 84 87-183 97-181 (394)
40 KOG0532 Leucine-rich repeat (L 97.3 1.7E-05 3.8E-10 69.3 -3.0 46 134-182 183-228 (722)
41 KOG0532 Leucine-rich repeat (L 97.2 2.7E-05 5.8E-10 68.2 -2.5 63 107-177 185-247 (722)
42 KOG0531 Protein phosphatase 1, 97.1 0.00025 5.3E-09 60.8 1.7 81 83-177 95-175 (414)
43 PF00560 LRR_1: Leucine Rich R 97.0 0.00019 4E-09 35.5 -0.0 11 143-153 3-13 (22)
44 KOG1859 Leucine-rich repeat pr 97.0 3.7E-05 8E-10 69.2 -4.4 79 85-177 166-245 (1096)
45 KOG2982 Uncharacterized conser 96.9 0.00013 2.9E-09 59.6 -1.2 86 83-176 71-158 (418)
46 KOG1644 U2-associated snRNP A' 96.9 0.0019 4.2E-08 50.0 4.7 81 84-177 43-126 (233)
47 KOG4658 Apoptotic ATPase [Sign 96.7 0.00096 2.1E-08 62.3 2.4 84 82-175 570-653 (889)
48 KOG0531 Protein phosphatase 1, 96.7 0.00049 1.1E-08 59.0 0.4 81 83-177 118-199 (414)
49 KOG2739 Leucine-rich acidic nu 96.5 0.0018 3.9E-08 51.7 2.5 64 107-177 61-129 (260)
50 PF00560 LRR_1: Leucine Rich R 96.3 0.0025 5.4E-08 31.3 1.4 21 112-138 1-21 (22)
51 KOG2739 Leucine-rich acidic nu 96.1 0.0034 7.4E-08 50.1 2.0 62 109-177 41-104 (260)
52 KOG1644 U2-associated snRNP A' 95.8 0.012 2.5E-07 45.8 3.8 60 111-177 42-101 (233)
53 PF13504 LRR_7: Leucine rich r 95.5 0.0076 1.6E-07 27.7 1.2 13 141-153 2-14 (17)
54 KOG3207 Beta-tubulin folding c 95.3 0.0022 4.8E-08 54.8 -1.9 41 84-126 147-187 (505)
55 smart00369 LRR_TYP Leucine-ric 95.1 0.014 2.9E-07 29.7 1.4 18 164-182 2-19 (26)
56 smart00370 LRR Leucine-rich re 95.1 0.014 2.9E-07 29.7 1.4 18 164-182 2-19 (26)
57 KOG0473 Leucine-rich repeat pr 95.1 0.00032 7E-09 55.5 -7.0 84 82-177 41-124 (326)
58 KOG1909 Ran GTPase-activating 95.1 0.011 2.3E-07 49.3 1.4 89 84-177 186-283 (382)
59 KOG3665 ZYG-1-like serine/thre 95.0 0.014 3E-07 53.4 2.2 46 134-179 214-265 (699)
60 KOG3207 Beta-tubulin folding c 95.0 0.012 2.5E-07 50.5 1.6 14 110-123 245-258 (505)
61 KOG2123 Uncharacterized conser 94.4 0.0024 5.2E-08 51.9 -3.8 79 82-170 40-123 (388)
62 smart00370 LRR Leucine-rich re 94.1 0.052 1.1E-06 27.4 2.2 20 139-159 1-20 (26)
63 smart00369 LRR_TYP Leucine-ric 94.1 0.052 1.1E-06 27.4 2.2 20 139-159 1-20 (26)
64 COG5238 RNA1 Ran GTPase-activa 93.7 0.029 6.3E-07 45.7 1.2 13 83-95 30-42 (388)
65 KOG3665 ZYG-1-like serine/thre 93.5 0.042 9.2E-07 50.3 2.0 84 84-177 149-233 (699)
66 KOG2982 Uncharacterized conser 92.3 0.049 1.1E-06 44.9 0.5 64 109-177 69-134 (418)
67 PRK15386 type III secretion pr 92.3 0.33 7.2E-06 41.8 5.5 31 141-174 157-187 (426)
68 KOG2123 Uncharacterized conser 92.3 0.0089 1.9E-07 48.7 -3.7 85 84-182 20-106 (388)
69 PF13516 LRR_6: Leucine Rich r 91.8 0.032 6.9E-07 27.7 -0.7 9 143-151 5-13 (24)
70 KOG1909 Ran GTPase-activating 91.2 0.09 1.9E-06 44.0 0.9 43 135-177 208-254 (382)
71 smart00364 LRR_BAC Leucine-ric 90.7 0.15 3.4E-06 26.1 1.2 17 165-182 3-19 (26)
72 PRK15386 type III secretion pr 88.6 0.94 2E-05 39.1 5.1 50 85-150 54-104 (426)
73 KOG2120 SCF ubiquitin ligase, 87.5 0.26 5.6E-06 40.8 1.0 58 109-173 311-372 (419)
74 KOG0473 Leucine-rich repeat pr 87.4 0.014 3E-07 46.5 -6.1 70 106-183 37-106 (326)
75 PF13306 LRR_5: Leucine rich r 86.7 1.3 2.8E-05 30.7 4.2 76 84-173 36-112 (129)
76 COG5238 RNA1 Ran GTPase-activa 86.0 1.3 2.8E-05 36.4 4.2 69 107-177 88-170 (388)
77 smart00365 LRR_SD22 Leucine-ri 85.7 0.71 1.5E-05 23.6 1.8 14 140-153 2-15 (26)
78 smart00368 LRR_RI Leucine rich 83.0 1 2.2E-05 23.2 1.7 14 140-153 2-15 (28)
79 KOG2120 SCF ubiquitin ligase, 78.4 0.27 5.9E-06 40.7 -2.2 57 112-173 186-243 (419)
80 PF13306 LRR_5: Leucine rich r 71.9 6.8 0.00015 27.0 3.9 78 84-174 13-91 (129)
81 KOG3763 mRNA export factor TAP 52.5 7.3 0.00016 34.8 1.2 63 83-154 218-284 (585)
82 KOG1947 Leucine rich repeat pr 47.3 11 0.00024 32.1 1.5 63 108-175 240-306 (482)
83 KOG3763 mRNA export factor TAP 45.5 13 0.00028 33.3 1.7 64 109-178 216-284 (585)
84 KOG3864 Uncharacterized conser 42.7 4.4 9.4E-05 31.7 -1.5 81 84-172 102-184 (221)
85 smart00367 LRR_CC Leucine-rich 37.4 24 0.00052 17.4 1.3 12 140-151 2-13 (26)
86 TIGR00864 PCC polycystin catio 34.3 25 0.00054 37.4 1.9 32 89-124 1-32 (2740)
87 KOG4308 LRR-containing protein 27.6 5.7 0.00012 35.0 -3.4 38 140-177 262-303 (478)
88 TIGR00864 PCC polycystin catio 22.7 54 0.0012 35.2 1.9 31 117-152 1-31 (2740)
89 PF08093 Toxin_23: Magi 5 toxi 20.1 91 0.002 16.3 1.6 16 58-73 4-19 (30)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.81 E-value=3.6e-19 Score=165.38 Aligned_cols=142 Identities=29% Similarity=0.431 Sum_probs=87.5
Q ss_pred cHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCEEEEEcCCCCCCCCCC----------
Q 036330 31 LETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWEQVKCVNATTRRVKELSLDGITLGANSG---------- 100 (187)
Q Consensus 31 ~~~~~~~Ll~~k~~~~~~~p~~~~~~~l~~W~~~~~~~~C~w~gv~C~~~~~~~v~~L~L~~~~l~~~~~---------- 100 (187)
.++|+.+|++||+++. +| ...+.+|+.. .++|.|.||.|+. .++|+.|+|+++++++...
T Consensus 27 ~~~~~~~l~~~~~~~~--~~----~~~~~~w~~~--~~~c~w~gv~c~~--~~~v~~L~L~~~~i~~~~~~~~~~l~~L~ 96 (968)
T PLN00113 27 HAEELELLLSFKSSIN--DP----LKYLSNWNSS--ADVCLWQGITCNN--SSRVVSIDLSGKNISGKISSAIFRLPYIQ 96 (968)
T ss_pred CHHHHHHHHHHHHhCC--CC----cccCCCCCCC--CCCCcCcceecCC--CCcEEEEEecCCCccccCChHHhCCCCCC
Confidence 5689999999999986 45 3457899765 7899999999986 4689999999988743211
Q ss_pred -----------CCCCccCcCCCCCcEEEccCCccccccCCC-----------------ccccccCCCCCCCEEEccCCCC
Q 036330 101 -----------FLNLSMFLPFQELESLDLSYNSFYGVYEKE-----------------GMYLSIGSLKWLKILNLYSNNV 152 (187)
Q Consensus 101 -----------~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~-----------------~~~~~~~~l~~L~~L~Ls~N~l 152 (187)
.++...+..+++|++|+|++|.++|.+|.. ..|..++.+++|++|+|++|.+
T Consensus 97 ~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l 176 (968)
T PLN00113 97 TINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL 176 (968)
T ss_pred EEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc
Confidence 011111223444555555555444444310 0123455555566666666655
Q ss_pred CCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330 153 NNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 153 ~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
.+.+|..++++++|++|+|++|+++|.+|.
T Consensus 177 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~ 206 (968)
T PLN00113 177 VGKIPNSLTNLTSLEFLTLASNQLVGQIPR 206 (968)
T ss_pred cccCChhhhhCcCCCeeeccCCCCcCcCCh
Confidence 555565555666666666666666555553
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.79 E-value=7.4e-19 Score=156.73 Aligned_cols=135 Identities=30% Similarity=0.410 Sum_probs=113.1
Q ss_pred CCCcHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCC-----CCcceeecCC-CC--CCEEEEEcCCCCCCCCC
Q 036330 28 RGCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCC-----RWEQVKCVNA-TT--RRVKELSLDGITLGANS 99 (187)
Q Consensus 28 ~~~~~~~~~~Ll~~k~~~~~~~p~~~~~~~l~~W~~~~~~~~C-----~w~gv~C~~~-~~--~~v~~L~L~~~~l~~~~ 99 (187)
..+.++|.++|+++|+.+. ++. ..+|+. ++| .|.||.|... .. .+|+.|+|+++++.
T Consensus 367 ~~t~~~~~~aL~~~k~~~~--~~~------~~~W~g----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~--- 431 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLG--LPL------RFGWNG----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLR--- 431 (623)
T ss_pred cccCchHHHHHHHHHHhcC--Ccc------cCCCCC----CCCCCcccccccceeeccCCCCceEEEEEECCCCCcc---
Confidence 3456789999999999986 231 247963 455 6999999531 11 25999999999994
Q ss_pred CCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccccc
Q 036330 100 GFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGF 179 (187)
Q Consensus 100 ~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~ 179 (187)
+.++ ..+..+++|+.|+|++|.++|.+| ..++.+++|+.|+|++|+++|.+|+.++++++|+.|+|++|+|+|.
T Consensus 432 g~ip-~~i~~L~~L~~L~Ls~N~l~g~iP-----~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~ 505 (623)
T PLN03150 432 GFIP-NDISKLRHLQSINLSGNSIRGNIP-----PSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505 (623)
T ss_pred ccCC-HHHhCCCCCCEEECCCCcccCcCC-----hHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccccc
Confidence 3333 347889999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 036330 180 IPNQ 183 (187)
Q Consensus 180 iP~~ 183 (187)
+|..
T Consensus 506 iP~~ 509 (623)
T PLN03150 506 VPAA 509 (623)
T ss_pred CChH
Confidence 9975
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.29 E-value=3.9e-12 Score=118.56 Aligned_cols=75 Identities=27% Similarity=0.406 Sum_probs=62.0
Q ss_pred CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCCCCCC
Q 036330 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQGMF 186 (187)
Q Consensus 107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~~~~ 186 (187)
+..+++|++|++++|.++|.+| ..+..+++|+.|||++|+++|.+|..+.++++|+.|++++|+++|.||..+.|
T Consensus 519 ~~~l~~L~~L~Ls~N~l~~~~p-----~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~ 593 (968)
T PLN00113 519 LSSCKKLVSLDLSHNQLSGQIP-----ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAF 593 (968)
T ss_pred HcCccCCCEEECCCCcccccCC-----hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchh
Confidence 5566777777777777777777 78888888888888888888888888888888999999999998888876554
No 4
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.02 E-value=1.8e-10 Score=72.31 Aligned_cols=61 Identities=30% Similarity=0.327 Sum_probs=51.0
Q ss_pred CCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccc
Q 036330 111 QELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGI 176 (187)
Q Consensus 111 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l 176 (187)
++|++|++++|+++ .+|. ..+..+++|++|++++|+++..-|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~-~i~~----~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPP----DSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES-EECT----TTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC-ccCH----HHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46889999999998 4552 5788899999999999999866666889999999999999975
No 5
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=99.00 E-value=6.4e-10 Score=65.01 Aligned_cols=42 Identities=33% Similarity=0.642 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCcceeec
Q 036330 32 ETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWEQVKCV 78 (187)
Q Consensus 32 ~~~~~~Ll~~k~~~~~~~p~~~~~~~l~~W~~~~~~~~C~w~gv~C~ 78 (187)
++|+++|++||+++.. +| ...+.+|+.....+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~-~~----~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNN-DP----SGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT--SC-----CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhccc-cc----CcccccCCCcCCCCCeeeccEEeC
Confidence 5799999999999974 34 467899987533699999999995
No 6
>PLN03150 hypothetical protein; Provisional
Probab=98.98 E-value=1e-09 Score=98.38 Aligned_cols=91 Identities=30% Similarity=0.409 Sum_probs=77.5
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
.+++.|+|++|.+. +.++ ..+..+++|+.|||++|.++|.+| ..++++++|++|+|++|+++|.+|..++.
T Consensus 442 ~~L~~L~Ls~N~l~---g~iP-~~~~~l~~L~~LdLs~N~lsg~iP-----~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 442 RHLQSINLSGNSIR---GNIP-PSLGSITSLEVLDLSYNSFNGSIP-----ESLGQLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred CCCCEEECCCCccc---CcCC-hHHhCCCCCCEEECCCCCCCCCCc-----hHHhcCCCCCEEECcCCcccccCChHHhh
Confidence 46899999999994 2233 347889999999999999999999 89999999999999999999999999987
Q ss_pred C-CCCCEEEcccccccccCCC
Q 036330 163 I-ISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 163 l-~~L~~L~Ls~N~l~G~iP~ 182 (187)
+ .++..+++.+|.....+|.
T Consensus 513 ~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 513 RLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred ccccCceEEecCCccccCCCC
Confidence 4 5778999999986555553
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.93 E-value=5.4e-11 Score=89.45 Aligned_cols=92 Identities=27% Similarity=0.311 Sum_probs=78.6
Q ss_pred CCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhh
Q 036330 82 TRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT 161 (187)
Q Consensus 82 ~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~ 161 (187)
..+++.+.|+.|.++ ..++.+..+.+|+.|++++|++. .+| .+++.+++|++|+++-|++. .+|..||
T Consensus 32 ~s~ITrLtLSHNKl~-----~vppnia~l~nlevln~~nnqie-~lp-----~~issl~klr~lnvgmnrl~-~lprgfg 99 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-----VVPPNIAELKNLEVLNLSNNQIE-ELP-----TSISSLPKLRILNVGMNRLN-ILPRGFG 99 (264)
T ss_pred hhhhhhhhcccCcee-----ecCCcHHHhhhhhhhhcccchhh-hcC-----hhhhhchhhhheecchhhhh-cCccccC
Confidence 357899999999994 22234778899999999999998 788 79999999999999999998 7999999
Q ss_pred cCCCCCEEEcccccccc-cCCCCCC
Q 036330 162 TIISLTNLSLGYCGIEG-FIPNQGM 185 (187)
Q Consensus 162 ~l~~L~~L~Ls~N~l~G-~iP~~~~ 185 (187)
.++.|++|||.+|+++- .+|...+
T Consensus 100 s~p~levldltynnl~e~~lpgnff 124 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGNFF 124 (264)
T ss_pred CCchhhhhhccccccccccCCcchh
Confidence 99999999999999984 5665433
No 8
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.66 E-value=3e-08 Score=75.27 Aligned_cols=82 Identities=23% Similarity=0.248 Sum_probs=31.1
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCcccccc-CCCCCCCEEEccCCCCCC-CChHHhh
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSI-GSLKWLKILNLYSNNVNN-SLLPSLT 161 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~-~~l~~L~~L~Ls~N~l~G-~iP~~l~ 161 (187)
+++.|+|++|.++.+. .+..++.|+.|++++|.++. ++ ..+ ..+++|++|++++|++.. .-=..+.
T Consensus 43 ~L~~L~Ls~N~I~~l~------~l~~L~~L~~L~L~~N~I~~-i~-----~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~ 110 (175)
T PF14580_consen 43 KLEVLDLSNNQITKLE------GLPGLPRLKTLDLSNNRISS-IS-----EGLDKNLPNLQELYLSNNKISDLNELEPLS 110 (175)
T ss_dssp T--EEE-TTS--S--T------T----TT--EEE--SS---S--C-----HHHHHH-TT--EEE-TTS---SCCCCGGGG
T ss_pred CCCEEECCCCCCcccc------CccChhhhhhcccCCCCCCc-cc-----cchHHhCCcCCEEECcCCcCCChHHhHHHH
Confidence 5677777777773222 25556777777777777763 33 233 346777777777777753 1113466
Q ss_pred cCCCCCEEEccccccc
Q 036330 162 TIISLTNLSLGYCGIE 177 (187)
Q Consensus 162 ~l~~L~~L~Ls~N~l~ 177 (187)
.+++|++|+|.+|.++
T Consensus 111 ~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 111 SLPKLRVLSLEGNPVC 126 (175)
T ss_dssp G-TT--EEE-TT-GGG
T ss_pred cCCCcceeeccCCccc
Confidence 6777777777777766
No 9
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.65 E-value=3.4e-08 Score=61.83 Aligned_cols=60 Identities=28% Similarity=0.366 Sum_probs=51.3
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCC
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNV 152 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l 152 (187)
+++.|++++|.++ .++...|..+++|++|++++|.++..-| ..|..+++|++|++++|++
T Consensus 2 ~L~~L~l~~n~l~----~i~~~~f~~l~~L~~L~l~~N~l~~i~~-----~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLT----EIPPDSFSNLPNLETLDLSNNNLTSIPP-----DAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTES----EECTTTTTTGTTESEEEETSSSESEEET-----TTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCC----ccCHHHHcCCCCCCEeEccCCccCccCH-----HHHcCCCCCCEEeCcCCcC
Confidence 5789999999984 3444668899999999999999985555 7899999999999999985
No 10
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.55 E-value=6.7e-08 Score=56.66 Aligned_cols=36 Identities=31% Similarity=0.431 Sum_probs=22.9
Q ss_pred CCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330 141 WLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 141 ~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
+|++|++++|+++ .+|+.+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5666666666666 46666666777777777776666
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.54 E-value=3.7e-08 Score=82.59 Aligned_cols=91 Identities=23% Similarity=0.348 Sum_probs=68.5
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCC-----------------c--cccccCCCCCCCE
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKE-----------------G--MYLSIGSLKWLKI 144 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~-----------------~--~~~~~~~l~~L~~ 144 (187)
+++.++|++|-+.. ++ ..++.+..|+.||++.|+|. .+|.- + .|..+.+|.+|..
T Consensus 436 kLt~L~L~NN~Ln~----LP-~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t 509 (565)
T KOG0472|consen 436 KLTFLDLSNNLLND----LP-EEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT 509 (565)
T ss_pred cceeeecccchhhh----cc-hhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence 45666677666621 22 22556677888888888886 45520 0 1344889999999
Q ss_pred EEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCCC
Q 036330 145 LNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQ 183 (187)
Q Consensus 145 L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~ 183 (187)
|||.+|.+. .||+.+|+|++|++|++++|.|+ .|..
T Consensus 510 LDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 510 LDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRH 545 (565)
T ss_pred eccCCCchh-hCChhhccccceeEEEecCCccC--CCHH
Confidence 999999998 89999999999999999999998 6754
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.53 E-value=1.3e-08 Score=76.78 Aligned_cols=78 Identities=27% Similarity=0.358 Sum_probs=64.3
Q ss_pred ccCcCCCCCcEEEccCCcccc-ccCCC------------------ccccccCCCCCCCEEEccCCCCCCCChHHhhcCCC
Q 036330 105 SMFLPFQELESLDLSYNSFYG-VYEKE------------------GMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIIS 165 (187)
Q Consensus 105 ~~l~~l~~L~~L~Ls~N~l~g-~ip~~------------------~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~ 165 (187)
..|+.++.|+.|||++|+++- .+|.. -.|++++++++||.|.+.+|.+- ++|.+++.+++
T Consensus 96 rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~ 174 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTR 174 (264)
T ss_pred cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHH
Confidence 457888888999998888764 34421 13688999999999999999988 79999999999
Q ss_pred CCEEEcccccccccCCCCC
Q 036330 166 LTNLSLGYCGIEGFIPNQG 184 (187)
Q Consensus 166 L~~L~Ls~N~l~G~iP~~~ 184 (187)
|+.|++.+|+++ .+|++.
T Consensus 175 lrelhiqgnrl~-vlppel 192 (264)
T KOG0617|consen 175 LRELHIQGNRLT-VLPPEL 192 (264)
T ss_pred HHHHhcccceee-ecChhh
Confidence 999999999999 788764
No 13
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.52 E-value=1e-07 Score=72.38 Aligned_cols=80 Identities=30% Similarity=0.404 Sum_probs=28.8
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCc-CCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHh-h
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFL-PFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSL-T 161 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l-~ 161 (187)
+.++|+|.++.++.+. .++ .+.+|+.|||++|.++ .++ .+..+++|+.|++++|+++ .+++.+ .
T Consensus 20 ~~~~L~L~~n~I~~Ie------~L~~~l~~L~~L~Ls~N~I~-~l~------~l~~L~~L~~L~L~~N~I~-~i~~~l~~ 85 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE------NLGATLDKLEVLDLSNNQIT-KLE------GLPGLPRLKTLDLSNNRIS-SISEGLDK 85 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---T------T----TT--EEE--SS----S-CHHHHH
T ss_pred cccccccccccccccc------chhhhhcCCCEEECCCCCCc-ccc------CccChhhhhhcccCCCCCC-ccccchHH
Confidence 5789999999984222 244 4789999999999998 454 6888999999999999999 465555 4
Q ss_pred cCCCCCEEEccccccc
Q 036330 162 TIISLTNLSLGYCGIE 177 (187)
Q Consensus 162 ~l~~L~~L~Ls~N~l~ 177 (187)
.+++|+.|++++|++.
T Consensus 86 ~lp~L~~L~L~~N~I~ 101 (175)
T PF14580_consen 86 NLPNLQELYLSNNKIS 101 (175)
T ss_dssp H-TT--EEE-TTS---
T ss_pred hCCcCCEEECcCCcCC
Confidence 6899999999999987
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.37 E-value=1.1e-07 Score=83.98 Aligned_cols=87 Identities=24% Similarity=0.256 Sum_probs=64.2
Q ss_pred EEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCC----------------------------------
Q 036330 85 VKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKE---------------------------------- 130 (187)
Q Consensus 85 v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~---------------------------------- 130 (187)
...|+|++|++. +++.+.+.+|+.|-+||||+|++. .+|++
T Consensus 128 ~iVLNLS~N~Ie----tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vL 202 (1255)
T KOG0444|consen 128 SIVLNLSYNNIE----TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVL 202 (1255)
T ss_pred cEEEEcccCccc----cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhh
Confidence 445666666653 344455777888888888888887 34431
Q ss_pred ----------ccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330 131 ----------GMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 131 ----------~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
.+|..+..+.+|..+|+|.|.+. .+|+++-++++|+.|+||+|.++
T Consensus 203 hms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 203 HMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred hcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee
Confidence 14667777788888899999888 78999889999999999888877
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.36 E-value=4.2e-07 Score=82.99 Aligned_cols=42 Identities=24% Similarity=0.179 Sum_probs=36.6
Q ss_pred CCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330 140 KWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 140 ~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
.+|+.|++++|+++ .+|..++++++|+.|+|++|.|+|.+|.
T Consensus 422 ~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 422 SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 45777888888887 7899999999999999999999998765
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.34 E-value=2.4e-07 Score=81.03 Aligned_cols=91 Identities=23% Similarity=0.199 Sum_probs=50.3
Q ss_pred CCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCc--------------------cccccCCCCC
Q 036330 82 TRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEG--------------------MYLSIGSLKW 141 (187)
Q Consensus 82 ~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~--------------------~~~~~~~l~~ 141 (187)
.++++.|+|.+|.++.+. .+.+..++.|+.||||.|.++ .+|..- .-..|..+.+
T Consensus 124 sghl~~L~L~~N~I~sv~----se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lns 198 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVT----SEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNS 198 (873)
T ss_pred ccceeEEeeecccccccc----HHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccch
Confidence 357888888888874222 233445555566666665555 333200 0034555556
Q ss_pred CCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330 142 LKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 142 L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
|..|.|+.|+++-.-+..|.+|++|+.|+|..|++.
T Consensus 199 L~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 199 LLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred heeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 666666666666322234555666666666666654
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.31 E-value=8.6e-08 Score=80.48 Aligned_cols=95 Identities=28% Similarity=0.235 Sum_probs=73.4
Q ss_pred CEEEEEcCCCCCCCCCC-------------------CCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCE
Q 036330 84 RVKELSLDGITLGANSG-------------------FLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKI 144 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~-------------------~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~ 144 (187)
-|+.++++.|++...+. .+.+..++.+++|..|+|++|.+. .+| .+++.+..||.
T Consensus 389 ~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP-----~e~~~lv~Lq~ 462 (565)
T KOG0472|consen 389 IVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLP-----EEMGSLVRLQT 462 (565)
T ss_pred ceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcc-----hhhhhhhhhhe
Confidence 48999999998742110 122334667899999999999988 788 89999999999
Q ss_pred EEccCCCCC----------------------CCChHH-hhcCCCCCEEEcccccccccCCCCCC
Q 036330 145 LNLYSNNVN----------------------NSLLPS-LTTIISLTNLSLGYCGIEGFIPNQGM 185 (187)
Q Consensus 145 L~Ls~N~l~----------------------G~iP~~-l~~l~~L~~L~Ls~N~l~G~iP~~~~ 185 (187)
||++.|+|. |.+|+. +.+|.+|..|||.+|.+. .||+..+
T Consensus 463 LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lg 525 (565)
T KOG0472|consen 463 LNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILG 525 (565)
T ss_pred ecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhc
Confidence 999999875 233443 777889999999999998 8887543
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.31 E-value=7.3e-08 Score=87.56 Aligned_cols=83 Identities=27% Similarity=0.278 Sum_probs=57.0
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
.+++-|+|++|.+. .++.+.+.++..|+.|+||+|.++ .+| ..+.+++.|++|...+|++. ..| ++.+
T Consensus 383 ~hLKVLhLsyNrL~----~fpas~~~kle~LeeL~LSGNkL~-~Lp-----~tva~~~~L~tL~ahsN~l~-~fP-e~~~ 450 (1081)
T KOG0618|consen 383 KHLKVLHLSYNRLN----SFPASKLRKLEELEELNLSGNKLT-TLP-----DTVANLGRLHTLRAHSNQLL-SFP-ELAQ 450 (1081)
T ss_pred cceeeeeecccccc----cCCHHHHhchHHhHHHhcccchhh-hhh-----HHHHhhhhhHHHhhcCCcee-ech-hhhh
Confidence 47899999999983 455567888999999999999998 677 45555555555555555554 445 4555
Q ss_pred CCCCCEEEccccccc
Q 036330 163 IISLTNLSLGYCGIE 177 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~ 177 (187)
+++|+++|++.|+|+
T Consensus 451 l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 451 LPQLKVLDLSCNNLS 465 (1081)
T ss_pred cCcceEEecccchhh
Confidence 555555555555554
No 19
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.28 E-value=2.2e-07 Score=81.27 Aligned_cols=83 Identities=29% Similarity=0.308 Sum_probs=39.7
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI 163 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l 163 (187)
.+..|+|+.|+++. ++..-+-+|+.|+.|+||+|.+...-+ ..|...++|++|||++|+++---+.+|..|
T Consensus 270 kme~l~L~~N~l~~----vn~g~lfgLt~L~~L~lS~NaI~rih~-----d~WsftqkL~~LdLs~N~i~~l~~~sf~~L 340 (873)
T KOG4194|consen 270 KMEHLNLETNRLQA----VNEGWLFGLTSLEQLDLSYNAIQRIHI-----DSWSFTQKLKELDLSSNRITRLDEGSFRVL 340 (873)
T ss_pred ccceeecccchhhh----hhcccccccchhhhhccchhhhheeec-----chhhhcccceeEeccccccccCChhHHHHH
Confidence 35556666666531 111223445556666666665554333 455555555555555555553223334333
Q ss_pred CCCCEEEccccc
Q 036330 164 ISLTNLSLGYCG 175 (187)
Q Consensus 164 ~~L~~L~Ls~N~ 175 (187)
++|+.|+|+.|.
T Consensus 341 ~~Le~LnLs~Ns 352 (873)
T KOG4194|consen 341 SQLEELNLSHNS 352 (873)
T ss_pred HHhhhhcccccc
Confidence 333333333333
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.28 E-value=1.2e-05 Score=73.58 Aligned_cols=41 Identities=12% Similarity=0.058 Sum_probs=30.1
Q ss_pred HHhcCCCCcHHHHHHHHHHHhhccccCCCCCCCCCCCC----CCCCCCCCCCCC
Q 036330 23 QMHGYRGCLETERTALLEIKRFFIAVRDTGYKDEILTS----WVDDEMSDCCRW 72 (187)
Q Consensus 23 ~~~~~~~~~~~~~~~Ll~~k~~~~~~~p~~~~~~~l~~----W~~~~~~~~C~w 72 (187)
.++......++|.+.++++.+.+.+ |. ...+ |+.. .++|.-
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~l~~--p~-----~~~~~~~~~~~~--~~fc~~ 97 (754)
T PRK15370 53 LCHPPETASPEEIKSKFECLRMLAF--PA-----YADNIQYSRGGA--DQYCIL 97 (754)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHhcC--Cc-----hhhccccccCCC--Cccccc
Confidence 3566677888999999999999874 53 3444 8775 678853
No 21
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.26 E-value=1.1e-06 Score=51.49 Aligned_cols=40 Identities=33% Similarity=0.407 Sum_probs=33.2
Q ss_pred CCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCCh
Q 036330 111 QELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLL 157 (187)
Q Consensus 111 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP 157 (187)
++|++|++++|.++ .+| +++++|++|++|++++|+++ .+|
T Consensus 1 ~~L~~L~l~~N~i~-~l~-----~~l~~l~~L~~L~l~~N~i~-~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLP-----PELSNLPNLETLNLSNNPIS-DIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-SHG-----GHGTTCTTSSEEEETSSCCS-BEG
T ss_pred CcceEEEccCCCCc-ccC-----chHhCCCCCCEEEecCCCCC-CCc
Confidence 47899999999999 678 67999999999999999998 343
No 22
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.18 E-value=2.6e-07 Score=81.62 Aligned_cols=71 Identities=30% Similarity=0.335 Sum_probs=49.0
Q ss_pred CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCCC
Q 036330 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQ 183 (187)
Q Consensus 107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~ 183 (187)
++.|+.|+.+++..|++.. .|+|.++..+..|..||||.|++. ..|..+..-.++-+|+||+|++. +||.+
T Consensus 74 Ls~Lp~LRsv~~R~N~LKn----sGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~ 144 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKN----SGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNS 144 (1255)
T ss_pred hccchhhHHHhhhcccccc----CCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCch
Confidence 4455556666666665532 123377777888888888888887 67777777777788888888877 77765
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.13 E-value=7.5e-07 Score=81.18 Aligned_cols=86 Identities=26% Similarity=0.340 Sum_probs=73.9
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI 163 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l 163 (187)
++.+|++++|.+. .++.. +..+.+|+.|+++.|.+. .+| .+...+.+|++|.|..|++. .+|.++..+
T Consensus 46 ~L~~l~lsnn~~~----~fp~~-it~l~~L~~ln~s~n~i~-~vp-----~s~~~~~~l~~lnL~~n~l~-~lP~~~~~l 113 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS----SFPIQ-ITLLSHLRQLNLSRNYIR-SVP-----SSCSNMRNLQYLNLKNNRLQ-SLPASISEL 113 (1081)
T ss_pred eeEEeeccccccc----cCCch-hhhHHHHhhcccchhhHh-hCc-----hhhhhhhcchhheeccchhh-cCchhHHhh
Confidence 3889999999982 23322 667889999999999988 678 78999999999999999998 799999999
Q ss_pred CCCCEEEcccccccccCCC
Q 036330 164 ISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 164 ~~L~~L~Ls~N~l~G~iP~ 182 (187)
.+|++|++++|+|. .+|.
T Consensus 114 knl~~LdlS~N~f~-~~Pl 131 (1081)
T KOG0618|consen 114 KNLQYLDLSFNHFG-PIPL 131 (1081)
T ss_pred hcccccccchhccC-CCch
Confidence 99999999999998 7774
No 24
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.08 E-value=4.7e-07 Score=65.90 Aligned_cols=90 Identities=18% Similarity=0.149 Sum_probs=74.8
Q ss_pred CCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhh
Q 036330 82 TRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT 161 (187)
Q Consensus 82 ~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~ 161 (187)
.-+++.++|++|.+. .++...-..++.++.|+|++|.++ .+| .++..++.|+.|+++.|.|. ..|..+.
T Consensus 52 ~~el~~i~ls~N~fk----~fp~kft~kf~t~t~lNl~~neis-dvP-----eE~Aam~aLr~lNl~~N~l~-~~p~vi~ 120 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK----KFPKKFTIKFPTATTLNLANNEIS-DVP-----EELAAMPALRSLNLRFNPLN-AEPRVIA 120 (177)
T ss_pred CceEEEEecccchhh----hCCHHHhhccchhhhhhcchhhhh-hch-----HHHhhhHHhhhcccccCccc-cchHHHH
Confidence 457999999999983 233343345678999999999998 788 88999999999999999999 6888888
Q ss_pred cCCCCCEEEcccccccccCCCC
Q 036330 162 TIISLTNLSLGYCGIEGFIPNQ 183 (187)
Q Consensus 162 ~l~~L~~L~Ls~N~l~G~iP~~ 183 (187)
.|.+|-.|+..+|... +||-.
T Consensus 121 ~L~~l~~Lds~~na~~-eid~d 141 (177)
T KOG4579|consen 121 PLIKLDMLDSPENARA-EIDVD 141 (177)
T ss_pred HHHhHHHhcCCCCccc-cCcHH
Confidence 8999999999999887 77644
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.06 E-value=8.9e-07 Score=74.22 Aligned_cols=85 Identities=26% Similarity=0.272 Sum_probs=56.8
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccC-CCCCCCChH-Hh
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYS-NNVNNSLLP-SL 160 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~-N~l~G~iP~-~l 160 (187)
...++|+|..|+|+ .++...|..+++|+.||||+|.|+-.-| ..|.++++|..|-+.+ |+++ .+|. .|
T Consensus 67 ~~tveirLdqN~I~----~iP~~aF~~l~~LRrLdLS~N~Is~I~p-----~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F 136 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS----SIPPGAFKTLHRLRRLDLSKNNISFIAP-----DAFKGLASLLSLVLYGNNKIT-DLPKGAF 136 (498)
T ss_pred CcceEEEeccCCcc----cCChhhccchhhhceecccccchhhcCh-----HhhhhhHhhhHHHhhcCCchh-hhhhhHh
Confidence 35788999999985 3444678889999999999999885555 5666666665554444 6666 3443 45
Q ss_pred hcCCCCCEEEccccccc
Q 036330 161 TTIISLTNLSLGYCGIE 177 (187)
Q Consensus 161 ~~l~~L~~L~Ls~N~l~ 177 (187)
++|.+|+.|.+..|++.
T Consensus 137 ~gL~slqrLllNan~i~ 153 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHIN 153 (498)
T ss_pred hhHHHHHHHhcChhhhc
Confidence 55555555555555544
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.03 E-value=1.9e-06 Score=70.32 Aligned_cols=64 Identities=23% Similarity=0.337 Sum_probs=30.9
Q ss_pred CCCCCcEEEccCCccccc----cCCCccccccCCCCCCCEEEccCCCCCCC----ChHHhhcCCCCCEEEccccccc
Q 036330 109 PFQELESLDLSYNSFYGV----YEKEGMYLSIGSLKWLKILNLYSNNVNNS----LLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 109 ~l~~L~~L~Ls~N~l~g~----ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
.+++|++|++++|.+++. ++ ..+..+++|++|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~-----~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALA-----EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHH-----HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 344555555555555531 11 2233344555555555555432 2223344555555555555554
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.94 E-value=2.6e-05 Score=74.70 Aligned_cols=88 Identities=18% Similarity=0.217 Sum_probs=56.1
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI 163 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l 163 (187)
.++.|+++++.+.. ++ ..+..+++|+.|+|+++..-+.+| .++.+++|+.|+|++|..-..+|..++++
T Consensus 612 ~L~~L~L~~s~l~~----L~-~~~~~l~~Lk~L~Ls~~~~l~~ip------~ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 612 NLVKLQMQGSKLEK----LW-DGVHSLTGLRNIDLRGSKNLKEIP------DLSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred CCcEEECcCccccc----cc-cccccCCCCCEEECCCCCCcCcCC------ccccCCcccEEEecCCCCccccchhhhcc
Confidence 45555555555521 11 124456777777777765445665 46677777777777776656777777777
Q ss_pred CCCCEEEcccccccccCCC
Q 036330 164 ISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 164 ~~L~~L~Ls~N~l~G~iP~ 182 (187)
++|+.|++++|..-+.+|.
T Consensus 681 ~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 681 NKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred CCCCEEeCCCCCCcCccCC
Confidence 7777777777654446665
No 28
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.90 E-value=2.6e-05 Score=74.70 Aligned_cols=88 Identities=23% Similarity=0.164 Sum_probs=62.0
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
.+++.|+|+++.. .. .+ +.+..+++|+.|+|++|..-..+| ..++.+++|+.|++++|..-+.+|..+ +
T Consensus 634 ~~Lk~L~Ls~~~~--l~-~i--p~ls~l~~Le~L~L~~c~~L~~lp-----~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 634 TGLRNIDLRGSKN--LK-EI--PDLSMATNLETLKLSDCSSLVELP-----SSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred CCCCEEECCCCCC--cC-cC--CccccCCcccEEEecCCCCccccc-----hhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 4688899987653 11 12 226678889999999887666788 788888888888888876555777655 6
Q ss_pred CCCCCEEEcccccccccCC
Q 036330 163 IISLTNLSLGYCGIEGFIP 181 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G~iP 181 (187)
+++|+.|++++|...+.+|
T Consensus 703 l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred CCCCCEEeCCCCCCccccc
Confidence 6777777777665444444
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.88 E-value=4e-06 Score=68.36 Aligned_cols=66 Identities=27% Similarity=0.313 Sum_probs=38.4
Q ss_pred CCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCC----ChHHhhcCCCCCEEEccccccc
Q 036330 111 QELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNS----LLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 111 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
++|+.|++++|.+++.... ..+..+..+++|++|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 137 ~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 206 (319)
T cd00116 137 PALEKLVLGRNRLEGASCE-ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLT 206 (319)
T ss_pred CCceEEEcCCCcCCchHHH-HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccC
Confidence 5666667776666632110 0003445556677777777777642 3344555567777777777765
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.85 E-value=8e-06 Score=68.63 Aligned_cols=85 Identities=21% Similarity=0.157 Sum_probs=67.2
Q ss_pred EEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCC
Q 036330 86 KELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIIS 165 (187)
Q Consensus 86 ~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~ 165 (187)
..++.++.+++.++..++ +.-..|+|-.|.|+ .||+ ..|+.+++|+.|||++|+++-.-|+.|..+.+
T Consensus 49 ~~VdCr~~GL~eVP~~LP-------~~tveirLdqN~I~-~iP~----~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~ 116 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLP-------PETVEIRLDQNQIS-SIPP----GAFKTLHRLRRLDLSKNNISFIAPDAFKGLAS 116 (498)
T ss_pred ceEEccCCCcccCcccCC-------CcceEEEeccCCcc-cCCh----hhccchhhhceecccccchhhcChHhhhhhHh
Confidence 445666666643333333 35688999999999 6773 78999999999999999999999999999999
Q ss_pred CCEEEccc-ccccccCCCC
Q 036330 166 LTNLSLGY-CGIEGFIPNQ 183 (187)
Q Consensus 166 L~~L~Ls~-N~l~G~iP~~ 183 (187)
|..|-+.+ |+|+ .||..
T Consensus 117 l~~Lvlyg~NkI~-~l~k~ 134 (498)
T KOG4237|consen 117 LLSLVLYGNNKIT-DLPKG 134 (498)
T ss_pred hhHHHhhcCCchh-hhhhh
Confidence 88887766 8898 78864
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.83 E-value=4.2e-05 Score=70.18 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=8.1
Q ss_pred CCCEEEccccccc
Q 036330 165 SLTNLSLGYCGIE 177 (187)
Q Consensus 165 ~L~~L~Ls~N~l~ 177 (187)
+|++|+|++|+|+
T Consensus 343 ~Lq~LdLS~N~Ls 355 (788)
T PRK15387 343 GLQELSVSDNQLA 355 (788)
T ss_pred ccceEecCCCccC
Confidence 4566666666666
No 32
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.83 E-value=2.8e-05 Score=71.20 Aligned_cols=37 Identities=30% Similarity=0.383 Sum_probs=22.1
Q ss_pred CCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCC
Q 036330 141 WLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIP 181 (187)
Q Consensus 141 ~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP 181 (187)
+|+.|++++|+++ .+|..+. .+|+.|++++|+|+ .+|
T Consensus 263 ~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP 299 (754)
T PRK15370 263 ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLP 299 (754)
T ss_pred CCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCc
Confidence 5666666666666 3555443 35666666666666 344
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.76 E-value=7.5e-06 Score=66.90 Aligned_cols=82 Identities=28% Similarity=0.321 Sum_probs=45.7
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCC--------
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNS-------- 155 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~-------- 155 (187)
.++++||++|.++.+.. ...-++.++.|++|+|.+. .+ ..+..+++|+.||||+|.++..
T Consensus 285 ~LtelDLS~N~I~~iDE-----SvKL~Pkir~L~lS~N~i~-~v------~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLG 352 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDE-----SVKLAPKLRRLILSQNRIR-TV------QNLAELPQLQLLDLSGNLLAECVGWHLKLG 352 (490)
T ss_pred hhhhccccccchhhhhh-----hhhhccceeEEecccccee-ee------hhhhhcccceEeecccchhHhhhhhHhhhc
Confidence 35567777776632211 1223456667777777665 23 2456666677777777665411
Q ss_pred -C------------hHHhhcCCCCCEEEccccccc
Q 036330 156 -L------------LPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 156 -i------------P~~l~~l~~L~~L~Ls~N~l~ 177 (187)
| -..++++-+|.+||+.+|++.
T Consensus 353 NIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred CEeeeehhhhhHhhhhhhHhhhhheeccccccchh
Confidence 0 112445566777777777664
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.76 E-value=2e-05 Score=66.73 Aligned_cols=87 Identities=26% Similarity=0.303 Sum_probs=65.5
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCC-CCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQ-ELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
.++.+++.++.++.+.+ ....++ +|+.|++++|.+. .+| ..+..++.|+.|++++|+++ .+|...+.
T Consensus 117 ~l~~L~l~~n~i~~i~~-----~~~~~~~nL~~L~l~~N~i~-~l~-----~~~~~l~~L~~L~l~~N~l~-~l~~~~~~ 184 (394)
T COG4886 117 NLTSLDLDNNNITDIPP-----LIGLLKSNLKELDLSDNKIE-SLP-----SPLRNLPNLKNLDLSFNDLS-DLPKLLSN 184 (394)
T ss_pred ceeEEecCCcccccCcc-----ccccchhhcccccccccchh-hhh-----hhhhccccccccccCCchhh-hhhhhhhh
Confidence 46777777777742222 122343 7889999999887 565 56888899999999999988 68887778
Q ss_pred CCCCCEEEcccccccccCCCC
Q 036330 163 IISLTNLSLGYCGIEGFIPNQ 183 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G~iP~~ 183 (187)
+++|+.|++++|+++ .||..
T Consensus 185 ~~~L~~L~ls~N~i~-~l~~~ 204 (394)
T COG4886 185 LSNLNNLDLSGNKIS-DLPPE 204 (394)
T ss_pred hhhhhheeccCCccc-cCchh
Confidence 888999999999988 77764
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.53 E-value=3e-05 Score=72.15 Aligned_cols=87 Identities=29% Similarity=0.297 Sum_probs=69.5
Q ss_pred CEEEEEcCCCC--CCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhh
Q 036330 84 RVKELSLDGIT--LGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT 161 (187)
Q Consensus 84 ~v~~L~L~~~~--l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~ 161 (187)
.+++|-+.++. +. ..+...|..++.|++|||++|.=-+.+| ..++.|-+|++|+|+...++ .+|..++
T Consensus 546 ~L~tLll~~n~~~l~----~is~~ff~~m~~LrVLDLs~~~~l~~LP-----~~I~~Li~LryL~L~~t~I~-~LP~~l~ 615 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLL----EISGEFFRSLPLLRVLDLSGNSSLSKLP-----SSIGELVHLRYLDLSDTGIS-HLPSGLG 615 (889)
T ss_pred ccceEEEeecchhhh----hcCHHHHhhCcceEEEECCCCCccCcCC-----hHHhhhhhhhcccccCCCcc-ccchHHH
Confidence 45666666654 21 2222347789999999999987667899 89999999999999999999 8999999
Q ss_pred cCCCCCEEEcccccccccC
Q 036330 162 TIISLTNLSLGYCGIEGFI 180 (187)
Q Consensus 162 ~l~~L~~L~Ls~N~l~G~i 180 (187)
+|.+|.+||+..+.-...+
T Consensus 616 ~Lk~L~~Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 616 NLKKLIYLNLEVTGRLESI 634 (889)
T ss_pred HHHhhheeccccccccccc
Confidence 9999999999987754444
No 36
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.50 E-value=1.9e-05 Score=57.63 Aligned_cols=64 Identities=22% Similarity=0.293 Sum_probs=55.6
Q ss_pred CcCCCCCcEEEccCCccccccCCCccccccC-CCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIG-SLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~-~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
+....+|+.++|++|.|. .+| ..+. ..+.++.|+|++|+++ .+|.++..++.|+.|++++|.|.
T Consensus 49 l~~~~el~~i~ls~N~fk-~fp-----~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFK-KFP-----KKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN 113 (177)
T ss_pred HhCCceEEEEecccchhh-hCC-----HHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence 455678999999999998 566 5554 4568999999999999 79999999999999999999987
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.46 E-value=4.2e-05 Score=62.63 Aligned_cols=60 Identities=28% Similarity=0.262 Sum_probs=51.8
Q ss_pred CCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330 110 FQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 110 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
.+.|+.+|||+|.++ .+. .+..-++.++.|++|.|.+. .+ ..+..+++|+.|||++|.++
T Consensus 283 Wq~LtelDLS~N~I~-~iD-----ESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QID-----ESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred Hhhhhhccccccchh-hhh-----hhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH
Confidence 467899999999998 566 67788899999999999997 34 44888999999999999887
No 38
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.44 E-value=1.2e-05 Score=72.19 Aligned_cols=81 Identities=28% Similarity=0.404 Sum_probs=53.3
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI 163 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l 163 (187)
.+..|+|+.|.++. ...+..|++|+.|||++|.++ .+|. -....++ |+.|.+.+|.++. + ..+.+|
T Consensus 188 ale~LnLshNk~~~------v~~Lr~l~~LkhLDlsyN~L~-~vp~----l~~~gc~-L~~L~lrnN~l~t-L-~gie~L 253 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTK------VDNLRRLPKLKHLDLSYNCLR-HVPQ----LSMVGCK-LQLLNLRNNALTT-L-RGIENL 253 (1096)
T ss_pred Hhhhhccchhhhhh------hHHHHhcccccccccccchhc-cccc----cchhhhh-heeeeecccHHHh-h-hhHHhh
Confidence 45667777777721 123667788889999999887 5662 1223344 7777777777652 2 346677
Q ss_pred CCCCEEEcccccccc
Q 036330 164 ISLTNLSLGYCGIEG 178 (187)
Q Consensus 164 ~~L~~L~Ls~N~l~G 178 (187)
.+|+.||+++|-|+|
T Consensus 254 ksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSE 268 (1096)
T ss_pred hhhhccchhHhhhhc
Confidence 778888888887664
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.31 E-value=0.00017 Score=61.01 Aligned_cols=84 Identities=35% Similarity=0.419 Sum_probs=65.9
Q ss_pred EEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCC-CCCEEEccCCCCCCCChHHhhcCCC
Q 036330 87 ELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLK-WLKILNLYSNNVNNSLLPSLTTIIS 165 (187)
Q Consensus 87 ~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~-~L~~L~Ls~N~l~G~iP~~l~~l~~ 165 (187)
.+++..+.+. .....+..++.++.|++.+|.++ .+| .....++ +|+.|++++|++. .+|..++.+++
T Consensus 97 ~l~~~~~~~~-----~~~~~~~~~~~l~~L~l~~n~i~-~i~-----~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~ 164 (394)
T COG4886 97 SLDLNLNRLR-----SNISELLELTNLTSLDLDNNNIT-DIP-----PLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPN 164 (394)
T ss_pred eeeccccccc-----cCchhhhcccceeEEecCCcccc-cCc-----cccccchhhcccccccccchh-hhhhhhhcccc
Confidence 3566665551 11222445678999999999998 677 5677774 9999999999998 78888999999
Q ss_pred CCEEEcccccccccCCCC
Q 036330 166 LTNLSLGYCGIEGFIPNQ 183 (187)
Q Consensus 166 L~~L~Ls~N~l~G~iP~~ 183 (187)
|+.|++++|+++ .+|..
T Consensus 165 L~~L~l~~N~l~-~l~~~ 181 (394)
T COG4886 165 LKNLDLSFNDLS-DLPKL 181 (394)
T ss_pred ccccccCCchhh-hhhhh
Confidence 999999999999 67653
No 40
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.30 E-value=1.7e-05 Score=69.32 Aligned_cols=46 Identities=26% Similarity=0.431 Sum_probs=24.7
Q ss_pred cccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330 134 LSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 134 ~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
.+++.+.+|+.|.+..|++. .+|++++.| .|..||++.|+++ .||.
T Consensus 183 sql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv 228 (722)
T KOG0532|consen 183 SQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPV 228 (722)
T ss_pred HHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecch
Confidence 44555555555555555554 355555533 3556666666666 5554
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.24 E-value=2.7e-05 Score=68.19 Aligned_cols=63 Identities=19% Similarity=0.185 Sum_probs=50.6
Q ss_pred CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
++.+.+|+.|.+..|++. .+| +++..|+ |..||+|.|+++ .||.+|.+|+.|++|-|.+|.|+
T Consensus 185 l~~l~slr~l~vrRn~l~-~lp-----~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 185 LGYLTSLRDLNVRRNHLE-DLP-----EELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhHHHHHHHHHhhhhhh-hCC-----HHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 445556666666666655 455 7777554 899999999999 79999999999999999999998
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.08 E-value=0.00025 Score=60.79 Aligned_cols=81 Identities=27% Similarity=0.402 Sum_probs=56.7
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
..+..+++.+|.+..+.. .+..+++|++|++++|.++... .+..++.|+.|++++|.++. + ..+..
T Consensus 95 ~~l~~l~l~~n~i~~i~~-----~l~~~~~L~~L~ls~N~I~~i~-------~l~~l~~L~~L~l~~N~i~~-~-~~~~~ 160 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIEN-----LLSSLVNLQVLDLSFNKITKLE-------GLSTLTLLKELNLSGNLISD-I-SGLES 160 (414)
T ss_pred cceeeeeccccchhhccc-----chhhhhcchheecccccccccc-------chhhccchhhheeccCcchh-c-cCCcc
Confidence 457788888888732211 1456788888888888887443 36667778888888888763 3 33455
Q ss_pred CCCCCEEEccccccc
Q 036330 163 IISLTNLSLGYCGIE 177 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~ 177 (187)
+.+|+.+++++|++.
T Consensus 161 l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 161 LKSLKLLDLSYNRIV 175 (414)
T ss_pred chhhhcccCCcchhh
Confidence 778888888888877
No 43
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.96 E-value=0.00019 Score=35.47 Aligned_cols=11 Identities=36% Similarity=0.579 Sum_probs=4.2
Q ss_pred CEEEccCCCCC
Q 036330 143 KILNLYSNNVN 153 (187)
Q Consensus 143 ~~L~Ls~N~l~ 153 (187)
++|||++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.96 E-value=3.7e-05 Score=69.18 Aligned_cols=79 Identities=27% Similarity=0.190 Sum_probs=54.9
Q ss_pred EEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHH-hhcC
Q 036330 85 VKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPS-LTTI 163 (187)
Q Consensus 85 v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~-l~~l 163 (187)
+..++.+.|.+. ...+.+.-++.|+.|||++|+++.. +.+..+++|++|||++|.+. .+|.- ...+
T Consensus 166 L~~a~fsyN~L~-----~mD~SLqll~ale~LnLshNk~~~v-------~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc 232 (1096)
T KOG1859|consen 166 LATASFSYNRLV-----LMDESLQLLPALESLNLSHNKFTKV-------DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC 232 (1096)
T ss_pred HhhhhcchhhHH-----hHHHHHHHHHHhhhhccchhhhhhh-------HHHHhcccccccccccchhc-cccccchhhh
Confidence 444555555552 1112244567899999999998842 46788899999999999998 56652 2234
Q ss_pred CCCCEEEccccccc
Q 036330 164 ISLTNLSLGYCGIE 177 (187)
Q Consensus 164 ~~L~~L~Ls~N~l~ 177 (187)
. |+.|++.+|.++
T Consensus 233 ~-L~~L~lrnN~l~ 245 (1096)
T KOG1859|consen 233 K-LQLLNLRNNALT 245 (1096)
T ss_pred h-heeeeecccHHH
Confidence 3 899999999776
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.00013 Score=59.57 Aligned_cols=86 Identities=27% Similarity=0.307 Sum_probs=60.4
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCcccccc-CCCCCCCEEEccCCCCCCC-ChHHh
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSI-GSLKWLKILNLYSNNVNNS-LLPSL 160 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~-~~l~~L~~L~Ls~N~l~G~-iP~~l 160 (187)
.+|.++||.+|.++...... ..+.++++|++|+++.|.++..|- .+ -.+++|+.|-|.+..+.-. .-..+
T Consensus 71 ~~v~elDL~~N~iSdWseI~--~ile~lP~l~~LNls~N~L~s~I~------~lp~p~~nl~~lVLNgT~L~w~~~~s~l 142 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIG--AILEQLPALTTLNLSCNSLSSDIK------SLPLPLKNLRVLVLNGTGLSWTQSTSSL 142 (418)
T ss_pred hhhhhhhcccchhccHHHHH--HHHhcCccceEeeccCCcCCCccc------cCcccccceEEEEEcCCCCChhhhhhhh
Confidence 46889999999984221111 236688999999999999986554 22 3567888888888777542 33446
Q ss_pred hcCCCCCEEEcccccc
Q 036330 161 TTIISLTNLSLGYCGI 176 (187)
Q Consensus 161 ~~l~~L~~L~Ls~N~l 176 (187)
..++.++.|+++.|++
T Consensus 143 ~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 143 DDLPKVTELHMSDNSL 158 (418)
T ss_pred hcchhhhhhhhccchh
Confidence 6778888888888854
No 46
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.86 E-value=0.0019 Score=50.02 Aligned_cols=81 Identities=23% Similarity=0.220 Sum_probs=58.7
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccC-CCCCCCEEEccCCCCCCCChH--Hh
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIG-SLKWLKILNLYSNNVNNSLLP--SL 160 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~-~l~~L~~L~Ls~N~l~G~iP~--~l 160 (187)
....+||+.|.+. ....|..++.|..|.|++|+++..-| .+. .++.|+.|.|.+|.+. .+-+ -+
T Consensus 43 ~~d~iDLtdNdl~------~l~~lp~l~rL~tLll~nNrIt~I~p------~L~~~~p~l~~L~LtnNsi~-~l~dl~pL 109 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR------KLDNLPHLPRLHTLLLNNNRITRIDP------DLDTFLPNLKTLILTNNSIQ-ELGDLDPL 109 (233)
T ss_pred ccceecccccchh------hcccCCCccccceEEecCCcceeecc------chhhhccccceEEecCcchh-hhhhcchh
Confidence 4667899998882 11336678899999999999985444 443 4577899999999885 2222 35
Q ss_pred hcCCCCCEEEccccccc
Q 036330 161 TTIISLTNLSLGYCGIE 177 (187)
Q Consensus 161 ~~l~~L~~L~Ls~N~l~ 177 (187)
..+++|++|.+-+|..+
T Consensus 110 a~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPVE 126 (233)
T ss_pred ccCCccceeeecCCchh
Confidence 67788999988888765
No 47
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.70 E-value=0.00096 Score=62.34 Aligned_cols=84 Identities=27% Similarity=0.194 Sum_probs=68.2
Q ss_pred CCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhh
Q 036330 82 TRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT 161 (187)
Q Consensus 82 ~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~ 161 (187)
...++.|||++|.- ...+| +.++.|-+|++|+++...++ .+| ..+++++.|.+||+..+..-..+|....
T Consensus 570 m~~LrVLDLs~~~~---l~~LP-~~I~~Li~LryL~L~~t~I~-~LP-----~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~ 639 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSS---LSKLP-SSIGELVHLRYLDLSDTGIS-HLP-----SGLGNLKKLIYLNLEVTGRLESIPGILL 639 (889)
T ss_pred CcceEEEECCCCCc---cCcCC-hHHhhhhhhhcccccCCCcc-ccc-----hHHHHHHhhheeccccccccccccchhh
Confidence 34688899998543 22343 44788999999999999998 889 8999999999999998887666777777
Q ss_pred cCCCCCEEEccccc
Q 036330 162 TIISLTNLSLGYCG 175 (187)
Q Consensus 162 ~l~~L~~L~Ls~N~ 175 (187)
.|++|++|.+..-.
T Consensus 640 ~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 640 ELQSLRVLRLPRSA 653 (889)
T ss_pred hcccccEEEeeccc
Confidence 89999999986544
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.68 E-value=0.00049 Score=58.97 Aligned_cols=81 Identities=30% Similarity=0.311 Sum_probs=64.3
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHH-hh
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPS-LT 161 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~-l~ 161 (187)
.+++.+++++|.|+.+.+ +..++.|+.|++++|.++. + ..+..++.|+.+++++|++...-+ . ..
T Consensus 118 ~~L~~L~ls~N~I~~i~~------l~~l~~L~~L~l~~N~i~~-~------~~~~~l~~L~~l~l~~n~i~~ie~-~~~~ 183 (414)
T KOG0531|consen 118 VNLQVLDLSFNKITKLEG------LSTLTLLKELNLSGNLISD-I------SGLESLKSLKLLDLSYNRIVDIEN-DELS 183 (414)
T ss_pred hcchheeccccccccccc------hhhccchhhheeccCcchh-c------cCCccchhhhcccCCcchhhhhhh-hhhh
Confidence 468899999999943332 5567779999999999983 3 367779999999999999985333 2 57
Q ss_pred cCCCCCEEEccccccc
Q 036330 162 TIISLTNLSLGYCGIE 177 (187)
Q Consensus 162 ~l~~L~~L~Ls~N~l~ 177 (187)
.+.+++.+++..|.+.
T Consensus 184 ~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 184 ELISLEELDLGGNSIR 199 (414)
T ss_pred hccchHHHhccCCchh
Confidence 8889999999999876
No 49
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.52 E-value=0.0018 Score=51.73 Aligned_cols=64 Identities=31% Similarity=0.459 Sum_probs=47.1
Q ss_pred CcCCCCCcEEEccCC--ccccccCCCccccccCCCCCCCEEEccCCCCCCCChHH---hhcCCCCCEEEccccccc
Q 036330 107 FLPFQELESLDLSYN--SFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPS---LTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 107 l~~l~~L~~L~Ls~N--~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~---l~~l~~L~~L~Ls~N~l~ 177 (187)
+..|++|++|+++.| +.++.++ .-.-.+++|++|+|+.|++.- +.. +..+.+|..|++.+|.-+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~-----vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLE-----VLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CCCcchhhhhcccCCcccccccce-----ehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCcc
Confidence 556789999999999 6666655 344556999999999999863 332 456677888888877654
No 50
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.27 E-value=0.0025 Score=31.31 Aligned_cols=21 Identities=38% Similarity=0.358 Sum_probs=17.3
Q ss_pred CCcEEEccCCccccccCCCccccccCC
Q 036330 112 ELESLDLSYNSFYGVYEKEGMYLSIGS 138 (187)
Q Consensus 112 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~ 138 (187)
+|++||+++|+|+ .+| .+|++
T Consensus 1 ~L~~Ldls~n~l~-~ip-----~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIP-----SSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEG-----TTTTT
T ss_pred CccEEECCCCcCE-eCC-----hhhcC
Confidence 4899999999999 898 55654
No 51
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.09 E-value=0.0034 Score=50.14 Aligned_cols=62 Identities=27% Similarity=0.208 Sum_probs=48.1
Q ss_pred CCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCC--CCCCCChHHhhcCCCCCEEEccccccc
Q 036330 109 PFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSN--NVNNSLLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 109 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N--~l~G~iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
.+..|+.|.+.+-.++. + .++..|++|+.|+++.| +.++.++.-...+++|++++++.|++.
T Consensus 41 ~~~~le~ls~~n~gltt-~------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT-L------TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccchhhhhhhccceee-c------ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 34556666666666652 2 46778999999999999 667777776777899999999999987
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.83 E-value=0.012 Score=45.78 Aligned_cols=60 Identities=22% Similarity=0.206 Sum_probs=48.6
Q ss_pred CCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330 111 QELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 111 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
.....+||++|.+. .+ ..+..++.|.+|.|++|+++..-|.--.-+++|..|.|.+|++.
T Consensus 42 d~~d~iDLtdNdl~-~l------~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~ 101 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KL------DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ 101 (233)
T ss_pred cccceecccccchh-hc------ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh
Confidence 46789999999987 34 37889999999999999999544443334578999999999887
No 53
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.54 E-value=0.0076 Score=27.69 Aligned_cols=13 Identities=31% Similarity=0.465 Sum_probs=4.8
Q ss_pred CCCEEEccCCCCC
Q 036330 141 WLKILNLYSNNVN 153 (187)
Q Consensus 141 ~L~~L~Ls~N~l~ 153 (187)
+|+.|+|++|+|+
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444555555443
No 54
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.0022 Score=54.81 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=23.6
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccc
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGV 126 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ 126 (187)
+|+.|||+.|-+..... .......|++|+.|+|+.|++.-.
T Consensus 147 ~v~~LdLS~NL~~nw~~--v~~i~eqLp~Le~LNls~Nrl~~~ 187 (505)
T KOG3207|consen 147 NVRDLDLSRNLFHNWFP--VLKIAEQLPSLENLNLSSNRLSNF 187 (505)
T ss_pred cceeecchhhhHHhHHH--HHHHHHhcccchhcccccccccCC
Confidence 46777777766521111 112244677788888888777533
No 55
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.13 E-value=0.014 Score=29.68 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=8.9
Q ss_pred CCCCEEEcccccccccCCC
Q 036330 164 ISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 164 ~~L~~L~Ls~N~l~G~iP~ 182 (187)
++|+.|+|++|+++ .||.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 34455555555555 4443
No 56
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.13 E-value=0.014 Score=29.68 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=8.9
Q ss_pred CCCCEEEcccccccccCCC
Q 036330 164 ISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 164 ~~L~~L~Ls~N~l~G~iP~ 182 (187)
++|+.|+|++|+++ .||.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 34455555555555 4443
No 57
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.10 E-value=0.00032 Score=55.54 Aligned_cols=84 Identities=18% Similarity=-0.009 Sum_probs=69.0
Q ss_pred CCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhh
Q 036330 82 TRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT 161 (187)
Q Consensus 82 ~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~ 161 (187)
..+|+.||++.+.+...+ ..+.-++.+..||++.|.+. .+| ..++.+..+..+++..|.++ ..|.+++
T Consensus 41 ~kr~tvld~~s~r~vn~~-----~n~s~~t~~~rl~~sknq~~-~~~-----~d~~q~~e~~~~~~~~n~~~-~~p~s~~ 108 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLG-----KNFSILTRLVRLDLSKNQIK-FLP-----KDAKQQRETVNAASHKNNHS-QQPKSQK 108 (326)
T ss_pred cceeeeehhhhhHHHhhc-----cchHHHHHHHHHhccHhhHh-hCh-----hhHHHHHHHHHHHhhccchh-hCCcccc
Confidence 368999999999873222 23556788999999999887 677 78888889999999999988 7899999
Q ss_pred cCCCCCEEEccccccc
Q 036330 162 TIISLTNLSLGYCGIE 177 (187)
Q Consensus 162 ~l~~L~~L~Ls~N~l~ 177 (187)
..+.++++++-.|.|.
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 9999999998888765
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.06 E-value=0.011 Score=49.34 Aligned_cols=89 Identities=24% Similarity=0.190 Sum_probs=43.0
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccc----cCCCccccccCCCCCCCEEEccCCCCCCC----
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGV----YEKEGMYLSIGSLKWLKILNLYSNNVNNS---- 155 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~----ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~---- 155 (187)
.+..+.++.|++...+...-...+..+++|++|||..|-|+-. +. ..++.+++|+.|+++++.++..
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La-----kaL~s~~~L~El~l~dcll~~~Ga~a 260 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA-----KALSSWPHLRELNLGDCLLENEGAIA 260 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH-----HHhcccchheeecccccccccccHHH
Confidence 3455566666652111111112255677888888888877522 11 2234445556666655555321
Q ss_pred ChHHhh-cCCCCCEEEccccccc
Q 036330 156 LLPSLT-TIISLTNLSLGYCGIE 177 (187)
Q Consensus 156 iP~~l~-~l~~L~~L~Ls~N~l~ 177 (187)
+-+.+. ..++|++|.+.+|.++
T Consensus 261 ~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 261 FVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HHHHHhccCCCCceeccCcchhH
Confidence 111121 1345555555555543
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.02 E-value=0.014 Score=53.43 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=31.5
Q ss_pred cccCCCCCCCEEEccCCCCCCC--ChHH----hhcCCCCCEEEccccccccc
Q 036330 134 LSIGSLKWLKILNLYSNNVNNS--LLPS----LTTIISLTNLSLGYCGIEGF 179 (187)
Q Consensus 134 ~~~~~l~~L~~L~Ls~N~l~G~--iP~~----l~~l~~L~~L~Ls~N~l~G~ 179 (187)
.++.+|++|++||+|..+.... +... -..|++|+.||.|++.+++.
T Consensus 214 ~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 214 IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 3577888999999988776532 2221 12478899999888776643
No 60
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.012 Score=50.50 Aligned_cols=14 Identities=50% Similarity=0.731 Sum_probs=7.2
Q ss_pred CCCCcEEEccCCcc
Q 036330 110 FQELESLDLSYNSF 123 (187)
Q Consensus 110 l~~L~~L~Ls~N~l 123 (187)
++.|+.|||++|++
T Consensus 245 ~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 245 LQTLQELDLSNNNL 258 (505)
T ss_pred hhHHhhccccCCcc
Confidence 34455555555544
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.40 E-value=0.0024 Score=51.93 Aligned_cols=79 Identities=19% Similarity=0.128 Sum_probs=56.8
Q ss_pred CCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHH--
Q 036330 82 TRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPS-- 159 (187)
Q Consensus 82 ~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~-- 159 (187)
...+..|.|+-|.++.. ..+..++.|+.|.|..|.|.. +. ...-+.++++|+.|+|..|.-.|.-+..
T Consensus 40 Mp~lEVLsLSvNkIssL------~pl~rCtrLkElYLRkN~I~s-ld---EL~YLknlpsLr~LWL~ENPCc~~ag~nYR 109 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISSL------APLQRCTRLKELYLRKNCIES-LD---ELEYLKNLPSLRTLWLDENPCCGEAGQNYR 109 (388)
T ss_pred cccceeEEeeccccccc------hhHHHHHHHHHHHHHhccccc-HH---HHHHHhcCchhhhHhhccCCcccccchhHH
Confidence 45677888888888322 226678899999999998763 21 0134578899999999999988877654
Q ss_pred ---hhcCCCCCEEE
Q 036330 160 ---LTTIISLTNLS 170 (187)
Q Consensus 160 ---l~~l~~L~~L~ 170 (187)
+.-|++|+.||
T Consensus 110 ~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 110 RKVLRVLPNLKKLD 123 (388)
T ss_pred HHHHHHcccchhcc
Confidence 44577777776
No 62
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.13 E-value=0.052 Score=27.44 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=14.4
Q ss_pred CCCCCEEEccCCCCCCCChHH
Q 036330 139 LKWLKILNLYSNNVNNSLLPS 159 (187)
Q Consensus 139 l~~L~~L~Ls~N~l~G~iP~~ 159 (187)
+++|++|+|++|+++ .+|+.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 456788888888887 56654
No 63
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.13 E-value=0.052 Score=27.44 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=14.4
Q ss_pred CCCCCEEEccCCCCCCCChHH
Q 036330 139 LKWLKILNLYSNNVNNSLLPS 159 (187)
Q Consensus 139 l~~L~~L~Ls~N~l~G~iP~~ 159 (187)
+++|++|+|++|+++ .+|+.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 456788888888887 56654
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.73 E-value=0.029 Score=45.68 Aligned_cols=13 Identities=31% Similarity=0.506 Sum_probs=10.3
Q ss_pred CCEEEEEcCCCCC
Q 036330 83 RRVKELSLDGITL 95 (187)
Q Consensus 83 ~~v~~L~L~~~~l 95 (187)
..+++++|+||.+
T Consensus 30 d~~~evdLSGNti 42 (388)
T COG5238 30 DELVEVDLSGNTI 42 (388)
T ss_pred cceeEEeccCCcc
Confidence 4678888888887
No 65
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=93.55 E-value=0.042 Score=50.32 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=57.2
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCC-CChHHhhc
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNN-SLLPSLTT 162 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~~ 162 (187)
.+++|.+.+..+. ...+ .....++++|..||+|+.+++- + ..++.+++|+.|.+.+=.+.- ..-..+.+
T Consensus 149 sL~sL~i~~~~~~--~~dF-~~lc~sFpNL~sLDIS~TnI~n-l------~GIS~LknLq~L~mrnLe~e~~~~l~~LF~ 218 (699)
T KOG3665|consen 149 SLRSLVISGRQFD--NDDF-SQLCASFPNLRSLDISGTNISN-L------SGISRLKNLQVLSMRNLEFESYQDLIDLFN 218 (699)
T ss_pred ccceEEecCceec--chhH-HHHhhccCccceeecCCCCccC-c------HHHhccccHHHHhccCCCCCchhhHHHHhc
Confidence 4666666665551 1110 1225578999999999988772 2 368889999998887766642 23346778
Q ss_pred CCCCCEEEccccccc
Q 036330 163 IISLTNLSLGYCGIE 177 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~ 177 (187)
|++|++||+|.....
T Consensus 219 L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 219 LKKLRVLDISRDKNN 233 (699)
T ss_pred ccCCCeeeccccccc
Confidence 999999999976544
No 66
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.29 E-value=0.049 Score=44.94 Aligned_cols=64 Identities=22% Similarity=0.244 Sum_probs=46.8
Q ss_pred CCCCCcEEEccCCcccc--ccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330 109 PFQELESLDLSYNSFYG--VYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 109 ~l~~L~~L~Ls~N~l~g--~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
..++++.+||.+|.++. .|- .-+.++|.|+.|+|+.|+++..|-..=..+.+|++|-|.+..+.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~-----~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIG-----AILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS 134 (418)
T ss_pred HhhhhhhhhcccchhccHHHHH-----HHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence 46789999999999873 222 33568999999999999998654322135568888888776654
No 67
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.29 E-value=0.33 Score=41.84 Aligned_cols=31 Identities=29% Similarity=0.174 Sum_probs=15.7
Q ss_pred CCCEEEccCCCCCCCChHHhhcCCCCCEEEcccc
Q 036330 141 WLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYC 174 (187)
Q Consensus 141 ~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N 174 (187)
+|++|+++++... .+|..+. .+|+.|+++.|
T Consensus 157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 5556666555543 2333222 35666666554
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.28 E-value=0.0089 Score=48.72 Aligned_cols=85 Identities=28% Similarity=0.219 Sum_probs=64.8
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChH--Hhh
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLP--SLT 161 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~--~l~ 161 (187)
.|..|++=|.+++. .+....++.|++|.||-|.++..- .+..+++|+.|+|..|.+.. +-+ -+.
T Consensus 20 ~vkKLNcwg~~L~D------Isic~kMp~lEVLsLSvNkIssL~-------pl~rCtrLkElYLRkN~I~s-ldEL~YLk 85 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDD------ISICEKMPLLEVLSLSVNKISSLA-------PLQRCTRLKELYLRKNCIES-LDELEYLK 85 (388)
T ss_pred HhhhhcccCCCccH------HHHHHhcccceeEEeeccccccch-------hHHHHHHHHHHHHHhccccc-HHHHHHHh
Confidence 45566666665521 133567889999999999998543 48899999999999999873 332 467
Q ss_pred cCCCCCEEEcccccccccCCC
Q 036330 162 TIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 162 ~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
++++|+.|.|..|.-.|.-+.
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQ 106 (388)
T ss_pred cCchhhhHhhccCCcccccch
Confidence 899999999999998876554
No 69
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.76 E-value=0.032 Score=27.71 Aligned_cols=9 Identities=33% Similarity=0.530 Sum_probs=2.9
Q ss_pred CEEEccCCC
Q 036330 143 KILNLYSNN 151 (187)
Q Consensus 143 ~~L~Ls~N~ 151 (187)
++|+|++|+
T Consensus 5 ~~L~l~~n~ 13 (24)
T PF13516_consen 5 ETLDLSNNQ 13 (24)
T ss_dssp SEEE-TSSB
T ss_pred CEEEccCCc
Confidence 333333333
No 70
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=91.19 E-value=0.09 Score=43.99 Aligned_cols=43 Identities=28% Similarity=0.434 Sum_probs=29.8
Q ss_pred ccCCCCCCCEEEccCCCCCCC----ChHHhhcCCCCCEEEccccccc
Q 036330 135 SIGSLKWLKILNLYSNNVNNS----LLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 135 ~~~~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
.+..+++|+.|||.+|.|+-. +-..+..+++|+.|+++++.++
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccc
Confidence 456678888888888887532 3344566677888888777665
No 71
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=90.72 E-value=0.15 Score=26.06 Aligned_cols=17 Identities=24% Similarity=0.419 Sum_probs=10.7
Q ss_pred CCCEEEcccccccccCCC
Q 036330 165 SLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 165 ~L~~L~Ls~N~l~G~iP~ 182 (187)
+|+.|++++|+|+ ++|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4666666666666 5664
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=88.65 E-value=0.94 Score=39.11 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=24.4
Q ss_pred EEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccC-CccccccCCCccccccCCCCCCCEEEccCC
Q 036330 85 VKELSLDGITLGANSGFLNLSMFLPFQELESLDLSY-NSFYGVYEKEGMYLSIGSLKWLKILNLYSN 150 (187)
Q Consensus 85 v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~-N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N 150 (187)
.+.|+++++.++..+ .+ -.+|+.|++++ +.++ .+| ..+ .++|++|++++|
T Consensus 54 l~~L~Is~c~L~sLP-~L-------P~sLtsL~Lsnc~nLt-sLP-----~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 54 SGRLYIKDCDIESLP-VL-------PNELTEITIENCNNLT-TLP-----GSI--PEGLEKLTVCHC 104 (426)
T ss_pred CCEEEeCCCCCcccC-CC-------CCCCcEEEccCCCCcc-cCC-----chh--hhhhhheEccCc
Confidence 556777777663221 11 12466666665 2332 344 222 135566666555
No 73
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=87.50 E-value=0.26 Score=40.84 Aligned_cols=58 Identities=21% Similarity=0.111 Sum_probs=42.1
Q ss_pred CCCCCcEEEccCC-ccccccCCCccccccCCCCCCCEEEccCCCCCCCChHH---hhcCCCCCEEEccc
Q 036330 109 PFQELESLDLSYN-SFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPS---LTTIISLTNLSLGY 173 (187)
Q Consensus 109 ~l~~L~~L~Ls~N-~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~---l~~l~~L~~L~Ls~ 173 (187)
.+++|..||||.| .++...- .++..++.|++|.++.+. +.+|.. +...++|.+||+.+
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~-----~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCF-----QEFFKFNYLQHLSLSRCY--DIIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hCCceeeeccccccccCchHH-----HHHHhcchheeeehhhhc--CCChHHeeeeccCcceEEEEecc
Confidence 5788999999986 4543333 467788999999887765 456764 56678899998754
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.40 E-value=0.014 Score=46.49 Aligned_cols=70 Identities=20% Similarity=0.171 Sum_probs=58.0
Q ss_pred cCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCCC
Q 036330 106 MFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQ 183 (187)
Q Consensus 106 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~ 183 (187)
.+..+...+.||++.|++... - ..++.++.|..||++.|++. -+|..++++..++.+++..|..+ ..|.+
T Consensus 37 ei~~~kr~tvld~~s~r~vn~-~-----~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s 106 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNL-G-----KNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKS 106 (326)
T ss_pred hhhccceeeeehhhhhHHHhh-c-----cchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcc
Confidence 355678889999999998633 2 57778899999999999998 79999999999999999999887 55543
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=86.68 E-value=1.3 Score=30.73 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=32.9
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChH-Hhhc
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLP-SLTT 162 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~-~l~~ 162 (187)
.++.+.+..+ +. .+....|..++.|+.+.+.+ .+. .++. ..+..+++|+.+++..+ +. .++. .+.+
T Consensus 36 ~l~~i~~~~~-~~----~i~~~~F~~~~~l~~i~~~~-~~~-~i~~----~~F~~~~~l~~i~~~~~-~~-~i~~~~f~~ 102 (129)
T PF13306_consen 36 SLKSINFPNN-LT----SIGDNAFSNCKSLESITFPN-NLK-SIGD----NAFSNCTNLKNIDIPSN-IT-EIGSSSFSN 102 (129)
T ss_dssp T-SEEEESST-TS----CE-TTTTTT-TT-EEEEETS-TT--EE-T----TTTTT-TTECEEEETTT--B-EEHTTTTTT
T ss_pred cccccccccc-cc----ccceeeeecccccccccccc-ccc-cccc----ccccccccccccccCcc-cc-EEchhhhcC
Confidence 4556665553 32 12223355566677777754 222 2221 34556677777777554 33 2333 3555
Q ss_pred CCCCCEEEccc
Q 036330 163 IISLTNLSLGY 173 (187)
Q Consensus 163 l~~L~~L~Ls~ 173 (187)
+ +|+.+.+..
T Consensus 103 ~-~l~~i~~~~ 112 (129)
T PF13306_consen 103 C-NLKEINIPS 112 (129)
T ss_dssp --T--EEE-TT
T ss_pred C-CceEEEECC
Confidence 5 667666654
No 76
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=85.97 E-value=1.3 Score=36.40 Aligned_cols=69 Identities=28% Similarity=0.272 Sum_probs=36.3
Q ss_pred CcCCCCCcEEEccCCccccccCCC-ccccccCCCCCCCEEEccCCCCC----CCChHHhh---------cCCCCCEEEcc
Q 036330 107 FLPFQELESLDLSYNSFYGVYEKE-GMYLSIGSLKWLKILNLYSNNVN----NSLLPSLT---------TIISLTNLSLG 172 (187)
Q Consensus 107 l~~l~~L~~L~Ls~N~l~g~ip~~-~~~~~~~~l~~L~~L~Ls~N~l~----G~iP~~l~---------~l~~L~~L~Ls 172 (187)
+..+++|+..+||.|.|....|.. + .-++.-+.|.+|.|++|.+. |.|-..+. +-+.|++....
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~--d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELG--DLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHH--HHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 445667777777777766555510 0 12344456666666666652 12222211 23556666666
Q ss_pred ccccc
Q 036330 173 YCGIE 177 (187)
Q Consensus 173 ~N~l~ 177 (187)
.|+|.
T Consensus 166 rNRle 170 (388)
T COG5238 166 RNRLE 170 (388)
T ss_pred cchhc
Confidence 66654
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=85.71 E-value=0.71 Score=23.57 Aligned_cols=14 Identities=29% Similarity=0.382 Sum_probs=8.7
Q ss_pred CCCCEEEccCCCCC
Q 036330 140 KWLKILNLYSNNVN 153 (187)
Q Consensus 140 ~~L~~L~Ls~N~l~ 153 (187)
++|+.|+|+.|+++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666664
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=83.00 E-value=1 Score=23.16 Aligned_cols=14 Identities=29% Similarity=0.384 Sum_probs=9.2
Q ss_pred CCCCEEEccCCCCC
Q 036330 140 KWLKILNLYSNNVN 153 (187)
Q Consensus 140 ~~L~~L~Ls~N~l~ 153 (187)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35677777777764
No 79
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=78.45 E-value=0.27 Score=40.72 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=39.2
Q ss_pred CCcEEEccCCccccc-cCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccc
Q 036330 112 ELESLDLSYNSFYGV-YEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGY 173 (187)
Q Consensus 112 ~L~~L~Ls~N~l~g~-ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~ 173 (187)
.|++||||+..++-. +- .-+..+.+|+.|.|.++++...|-..+.+-..|+.|||+.
T Consensus 186 Rlq~lDLS~s~it~stl~-----~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLH-----GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred hhHHhhcchhheeHHHHH-----HHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence 577888888776532 11 2345677777778888888777777777777777777764
No 80
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=71.91 E-value=6.8 Score=26.99 Aligned_cols=78 Identities=14% Similarity=0.233 Sum_probs=41.3
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCCh-HHhhc
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLL-PSLTT 162 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~ 162 (187)
+++.+.+.. .+. .+....|..++.|+.+++..+ +. .++. ..+..+++|+.+.+.+ .+. .++ ..+..
T Consensus 13 ~l~~i~~~~-~~~----~I~~~~F~~~~~l~~i~~~~~-~~-~i~~----~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~ 79 (129)
T PF13306_consen 13 NLESITFPN-TIK----KIGENAFSNCTSLKSINFPNN-LT-SIGD----NAFSNCKSLESITFPN-NLK-SIGDNAFSN 79 (129)
T ss_dssp T--EEEETS-T------EE-TTTTTT-TT-SEEEESST-TS-CE-T----TTTTT-TT-EEEEETS-TT--EE-TTTTTT
T ss_pred CCCEEEECC-Cee----EeChhhccccccccccccccc-cc-ccce----eeeecccccccccccc-ccc-ccccccccc
Confidence 466677664 332 233345777778888888775 44 3442 4577777888888865 333 233 34666
Q ss_pred CCCCCEEEcccc
Q 036330 163 IISLTNLSLGYC 174 (187)
Q Consensus 163 l~~L~~L~Ls~N 174 (187)
+++|+.+++..|
T Consensus 80 ~~~l~~i~~~~~ 91 (129)
T PF13306_consen 80 CTNLKNIDIPSN 91 (129)
T ss_dssp -TTECEEEETTT
T ss_pred cccccccccCcc
Confidence 888888888655
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.51 E-value=7.3 Score=34.82 Aligned_cols=63 Identities=25% Similarity=0.165 Sum_probs=34.0
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCC--ccccccCCCccccccCCC--CCCCEEEccCCCCCC
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYN--SFYGVYEKEGMYLSIGSL--KWLKILNLYSNNVNN 154 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N--~l~g~ip~~~~~~~~~~l--~~L~~L~Ls~N~l~G 154 (187)
..|.+++|++|++..+...- +.-...+.|..|+|++| .+... .++..+ ..|+.|.+.+|.+..
T Consensus 218 p~i~sl~lsnNrL~~Ld~~s--slsq~apklk~L~LS~N~~~~~~~-------~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALS--SLSQIAPKLKTLDLSHNHSKISSE-------SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cceeeeecccchhhchhhhh--HHHHhcchhheeecccchhhhcch-------hhhhhhcCCCHHHeeecCCcccc
Confidence 45777777777773222200 01123467778888887 33211 123222 346777788887754
No 82
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=47.30 E-value=11 Score=32.08 Aligned_cols=63 Identities=24% Similarity=0.226 Sum_probs=33.9
Q ss_pred cCCCCCcEEEccCCc-cccccCCCcccccc-CCCCCCCEEEccCCC-CCCC-ChHHhhcCCCCCEEEccccc
Q 036330 108 LPFQELESLDLSYNS-FYGVYEKEGMYLSI-GSLKWLKILNLYSNN-VNNS-LLPSLTTIISLTNLSLGYCG 175 (187)
Q Consensus 108 ~~l~~L~~L~Ls~N~-l~g~ip~~~~~~~~-~~l~~L~~L~Ls~N~-l~G~-iP~~l~~l~~L~~L~Ls~N~ 175 (187)
..++.|+.|++++.. ++...- ..+ ..+++|+.|.+.+.. ++.. +-.-...+++|+.|+++.+.
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l-----~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGL-----SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhcCCcCccchhhhhccCchhH-----HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 345677777777765 331111 122 226677777766555 3432 11223346778888877554
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.52 E-value=13 Score=33.26 Aligned_cols=64 Identities=28% Similarity=0.323 Sum_probs=41.5
Q ss_pred CCCCCcEEEccCCccccccCCCcccccc-CCCCCCCEEEccCC--CCCCCChHHhhcC--CCCCEEEcccccccc
Q 036330 109 PFQELESLDLSYNSFYGVYEKEGMYLSI-GSLKWLKILNLYSN--NVNNSLLPSLTTI--ISLTNLSLGYCGIEG 178 (187)
Q Consensus 109 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~-~~l~~L~~L~Ls~N--~l~G~iP~~l~~l--~~L~~L~Ls~N~l~G 178 (187)
+.+.+..+.|++|++.- +... ..+ ..-|+|..|+|++| .+.. -.++.++ ..|+.|-+.+|.+.-
T Consensus 216 n~p~i~sl~lsnNrL~~-Ld~~---sslsq~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYH-LDAL---SSLSQIAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhc-hhhh---hHHHHhcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 56788999999999872 2200 111 23478999999999 4431 2233332 457888888888764
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.67 E-value=4.4 Score=31.71 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=45.0
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccC-CCCCCCEEEccCCC-CCCCChHHhh
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIG-SLKWLKILNLYSNN-VNNSLLPSLT 161 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~-~l~~L~~L~Ls~N~-l~G~iP~~l~ 161 (187)
.|..+|-++..+...| ...+..++.++.|.+.+..--+..- ...++ -.++|+.|+++.|. ++..=-..+.
T Consensus 102 ~IeaVDAsds~I~~eG----le~L~~l~~i~~l~l~~ck~~dD~~----L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~ 173 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEG----LEHLRDLRSIKSLSLANCKYFDDWC----LERLGGLAPSLQDLDLSGCPRITDGGLACLL 173 (221)
T ss_pred eEEEEecCCchHHHHH----HHHHhccchhhhheeccccchhhHH----HHHhcccccchheeeccCCCeechhHHHHHH
Confidence 4777777776652111 1335566677777776653221110 01121 34678888888654 5543334567
Q ss_pred cCCCCCEEEcc
Q 036330 162 TIISLTNLSLG 172 (187)
Q Consensus 162 ~l~~L~~L~Ls 172 (187)
.+++|+.|++.
T Consensus 174 ~lknLr~L~l~ 184 (221)
T KOG3864|consen 174 KLKNLRRLHLY 184 (221)
T ss_pred HhhhhHHHHhc
Confidence 77777777664
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=37.44 E-value=24 Score=17.35 Aligned_cols=12 Identities=25% Similarity=0.202 Sum_probs=7.6
Q ss_pred CCCCEEEccCCC
Q 036330 140 KWLKILNLYSNN 151 (187)
Q Consensus 140 ~~L~~L~Ls~N~ 151 (187)
++|++|+|+++.
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 566677766654
No 86
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=34.33 E-value=25 Score=37.42 Aligned_cols=32 Identities=19% Similarity=0.278 Sum_probs=24.9
Q ss_pred EcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccc
Q 036330 89 SLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFY 124 (187)
Q Consensus 89 ~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~ 124 (187)
||++|+|+ .++...|..+++|+.|+|++|.|.
T Consensus 1 DLSnN~Ls----tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS----TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC----ccChHHhccCCCceEEEeeCCccc
Confidence 57888884 344466778899999999999775
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=27.63 E-value=5.7 Score=34.98 Aligned_cols=38 Identities=26% Similarity=0.367 Sum_probs=23.2
Q ss_pred CCCCEEEccCCCCCCC----ChHHhhcCCCCCEEEccccccc
Q 036330 140 KWLKILNLYSNNVNNS----LLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 140 ~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
..+++++++.|.++.. +...+..+++++.+.+++|.+.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 4566777777777543 3334445566777777776654
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.71 E-value=54 Score=35.16 Aligned_cols=31 Identities=26% Similarity=0.206 Sum_probs=17.7
Q ss_pred EccCCccccccCCCccccccCCCCCCCEEEccCCCC
Q 036330 117 DLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNV 152 (187)
Q Consensus 117 ~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l 152 (187)
||++|+|+ .||. ..|..+++|+.|+|++|.+
T Consensus 1 DLSnN~Ls-tLp~----g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 1 DISNNKIS-TIEE----GICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCCcCC-ccCh----HHhccCCCceEEEeeCCcc
Confidence 45666665 3441 3455566666666666655
No 89
>PF08093 Toxin_23: Magi 5 toxic peptide family; InterPro: IPR012628 This family consists of toxic peptides (Magi 5) found in the venom of the Hexathelidae spider. Magi 5 is the first spider toxin with binding affinity to site 4 of a mammalian sodium channel and the toxin has an insecticidal effect on larvae, causing paralysis when injected into the larvae.; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1HP3_A 1G9P_A 2GX1_A.
Probab=20.05 E-value=91 Score=16.31 Aligned_cols=16 Identities=44% Similarity=1.068 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCCCCCc
Q 036330 58 LTSWVDDEMSDCCRWE 73 (187)
Q Consensus 58 l~~W~~~~~~~~C~w~ 73 (187)
+..|.-+++.++|.|.
T Consensus 4 l~~~~Cssdk~CCg~t 19 (30)
T PF08093_consen 4 LTFWRCSSDKDCCGWT 19 (30)
T ss_dssp -SSSB-SSCCCCCTT-
T ss_pred eeceeecCCcccccCc
Confidence 4567555567899987
Done!