Query 036330
Match_columns 187
No_of_seqs 284 out of 2701
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 19:57:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036330.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036330hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 2.2E-23 7.6E-28 169.8 10.6 142 29-182 2-167 (313)
2 3rgz_A Protein brassinosteroid 99.9 3.8E-22 1.3E-26 179.9 8.7 137 28-181 7-168 (768)
3 4eco_A Uncharacterized protein 99.8 2.7E-20 9.3E-25 164.8 10.4 137 31-183 28-268 (636)
4 4ecn_A Leucine-rich repeat pro 99.8 1.3E-19 4.5E-24 165.6 9.1 137 29-182 265-509 (876)
5 4fcg_A Uncharacterized protein 99.7 1.8E-18 6E-23 141.8 5.0 137 30-183 24-169 (328)
6 3rgz_A Protein brassinosteroid 99.6 7.8E-16 2.7E-20 138.8 7.6 95 83-186 632-726 (768)
7 3e6j_A Variable lymphocyte rec 99.6 2E-14 6.7E-19 111.9 10.9 107 59-177 10-148 (229)
8 1w8a_A SLIT protein; signaling 99.5 2E-14 6.8E-19 109.0 9.0 106 69-182 7-120 (192)
9 2o6r_A Variable lymphocyte rec 99.5 1.1E-13 3.7E-18 103.1 10.5 104 69-182 6-117 (177)
10 3g39_A Variable lymphocyte rec 99.5 9.4E-14 3.2E-18 103.4 9.6 103 70-181 9-119 (170)
11 2o6s_A Variable lymphocyte rec 99.5 2.2E-13 7.7E-18 103.9 10.5 106 68-177 5-137 (208)
12 2wfh_A SLIT homolog 2 protein 99.5 3.7E-13 1.3E-17 102.2 9.8 104 69-183 9-120 (193)
13 2v70_A SLIT-2, SLIT homolog 2 99.4 4.3E-13 1.5E-17 103.7 9.7 71 107-182 77-147 (220)
14 2v9t_B SLIT homolog 2 protein 99.4 4.4E-13 1.5E-17 103.7 9.4 106 69-178 10-142 (220)
15 1w8a_A SLIT protein; signaling 99.4 2.2E-13 7.6E-18 103.1 7.4 90 83-181 54-143 (192)
16 3m19_A Variable lymphocyte rec 99.4 5.7E-13 1.9E-17 104.6 9.2 64 109-177 81-144 (251)
17 2o6q_A Variable lymphocyte rec 99.4 1.1E-12 3.9E-17 103.9 10.2 106 67-177 2-146 (270)
18 2z81_A CD282 antigen, TOLL-lik 99.4 9.1E-13 3.1E-17 113.6 9.8 104 69-182 3-117 (549)
19 2v70_A SLIT-2, SLIT homolog 2 99.4 9.6E-13 3.3E-17 101.7 8.2 91 84-182 33-123 (220)
20 2z80_A TOLL-like receptor 2, v 99.4 2.7E-12 9.1E-17 105.4 10.5 105 67-182 27-141 (353)
21 2r9u_A Variable lymphocyte rec 99.4 3.8E-12 1.3E-16 95.1 10.0 88 83-179 33-120 (174)
22 3v47_A TOLL-like receptor 5B a 99.4 6.5E-13 2.2E-17 112.0 6.4 103 68-178 6-117 (455)
23 4g8a_A TOLL-like receptor 4; l 99.4 1.8E-12 6.1E-17 112.8 9.2 87 83-178 52-138 (635)
24 1ogq_A PGIP-2, polygalacturona 99.3 3.7E-13 1.3E-17 109.2 4.0 72 107-183 121-193 (313)
25 4fcg_A Uncharacterized protein 99.3 1.7E-12 5.9E-17 106.0 7.7 72 107-183 225-296 (328)
26 2ifg_A High affinity nerve gro 99.3 4.3E-12 1.5E-16 103.8 9.1 98 70-177 8-116 (347)
27 2v9t_B SLIT homolog 2 protein 99.3 5.4E-12 1.8E-16 97.5 8.9 87 83-178 80-166 (220)
28 2o6r_A Variable lymphocyte rec 99.3 5E-12 1.7E-16 94.0 7.9 90 83-181 52-141 (177)
29 3e6j_A Variable lymphocyte rec 99.3 9.6E-12 3.3E-16 96.6 9.7 89 83-181 88-176 (229)
30 2je0_A Acidic leucine-rich nuc 99.3 4.6E-12 1.6E-16 91.6 6.3 87 83-180 42-129 (149)
31 2o6s_A Variable lymphocyte rec 99.3 1.9E-11 6.4E-16 93.1 9.4 91 83-182 76-166 (208)
32 3g39_A Variable lymphocyte rec 99.3 2E-11 6.8E-16 90.7 9.2 85 85-182 11-95 (170)
33 2ifg_A High affinity nerve gro 99.3 1.7E-11 5.9E-16 100.1 9.0 85 87-183 12-98 (347)
34 2wfh_A SLIT homolog 2 protein 99.3 2E-11 6.9E-16 92.5 8.6 87 83-178 54-140 (193)
35 3m19_A Variable lymphocyte rec 99.2 2.8E-11 9.7E-16 94.8 9.6 88 83-179 83-170 (251)
36 3rfs_A Internalin B, repeat mo 99.2 2.6E-11 9E-16 96.2 9.4 95 83-181 109-222 (272)
37 2r9u_A Variable lymphocyte rec 99.2 3.4E-11 1.1E-15 89.9 9.3 85 86-183 15-99 (174)
38 3j0a_A TOLL-like receptor 5; m 99.2 1.1E-11 3.7E-16 112.8 7.2 102 70-179 14-138 (844)
39 2je0_A Acidic leucine-rich nuc 99.2 3.4E-11 1.2E-15 86.9 8.4 86 83-178 17-102 (149)
40 2xot_A Amphoterin-induced prot 99.2 2.3E-11 7.8E-16 100.4 8.2 107 70-182 18-153 (361)
41 3vq2_A TLR4, TOLL-like recepto 99.2 2.6E-11 9E-16 105.7 8.8 86 83-177 32-117 (606)
42 4g8a_A TOLL-like receptor 4; l 99.2 2.1E-11 7.3E-16 105.9 7.9 92 84-183 470-561 (635)
43 3rfs_A Internalin B, repeat mo 99.2 5.2E-11 1.8E-15 94.4 9.5 88 82-178 84-171 (272)
44 1dce_A Protein (RAB geranylger 99.2 4E-11 1.4E-15 105.0 9.2 88 83-182 463-551 (567)
45 3zyi_A Leucine-rich repeat-con 99.2 5.3E-11 1.8E-15 100.8 9.0 101 72-182 56-164 (452)
46 2ell_A Acidic leucine-rich nuc 99.2 3.9E-11 1.3E-15 88.3 7.0 86 83-179 49-135 (168)
47 4ezg_A Putative uncharacterize 99.2 5E-11 1.7E-15 90.2 7.6 65 107-177 108-172 (197)
48 2id5_A Lingo-1, leucine rich r 99.2 8E-11 2.7E-15 100.0 9.6 101 72-181 13-121 (477)
49 2xot_A Amphoterin-induced prot 99.2 3.3E-11 1.1E-15 99.5 7.0 88 83-181 88-179 (361)
50 3oja_B Anopheles plasmodium-re 99.2 5.5E-11 1.9E-15 104.2 8.7 88 85-181 77-164 (597)
51 1p9a_G Platelet glycoprotein I 99.2 1.1E-10 3.8E-15 93.7 9.8 72 106-183 119-190 (290)
52 1dce_A Protein (RAB geranylger 99.2 4.2E-11 1.4E-15 104.9 7.8 86 84-183 442-528 (567)
53 2ell_A Acidic leucine-rich nuc 99.2 5.4E-11 1.9E-15 87.5 7.3 86 83-178 24-109 (168)
54 3v47_A TOLL-like receptor 5B a 99.2 5.6E-11 1.9E-15 100.1 8.1 71 107-182 343-413 (455)
55 4b8c_D Glucose-repressible alc 99.2 1.1E-11 3.8E-16 111.4 3.7 87 83-182 224-310 (727)
56 2z62_A TOLL-like receptor 4, v 99.2 1.2E-10 4E-15 92.2 9.2 67 107-178 72-138 (276)
57 1p9a_G Platelet glycoprotein I 99.2 1.5E-10 5.2E-15 92.9 9.7 90 83-183 77-166 (290)
58 2o6q_A Variable lymphocyte rec 99.1 2E-10 6.8E-15 90.9 9.7 66 107-177 129-194 (270)
59 1ozn_A Reticulon 4 receptor; N 99.1 1.9E-10 6.4E-15 91.5 9.5 67 107-178 76-143 (285)
60 1a9n_A U2A', U2A'; complex (nu 99.1 8.4E-11 2.9E-15 87.4 6.9 86 84-182 43-130 (176)
61 2z66_A Variable lymphocyte rec 99.1 1E-10 3.6E-15 93.8 7.9 71 107-182 171-241 (306)
62 3vq2_A TLR4, TOLL-like recepto 99.1 2.3E-10 7.7E-15 99.8 10.1 90 84-182 81-171 (606)
63 3zyj_A Leucine-rich repeat-con 99.1 1.9E-10 6.4E-15 97.1 9.2 101 72-182 45-153 (440)
64 3o6n_A APL1; leucine-rich repe 99.1 4.7E-11 1.6E-15 99.1 5.3 70 106-181 88-158 (390)
65 1ozn_A Reticulon 4 receptor; N 99.1 2.1E-10 7.1E-15 91.2 8.7 42 136-177 173-214 (285)
66 3t6q_A CD180 antigen; protein- 99.1 1.2E-10 4E-15 101.6 7.8 87 83-178 33-119 (606)
67 4eco_A Uncharacterized protein 99.1 5.8E-11 2E-15 105.0 5.7 93 83-182 206-322 (636)
68 4b8c_D Glucose-repressible alc 99.1 7.9E-11 2.7E-15 105.9 6.7 88 83-182 247-334 (727)
69 2z62_A TOLL-like receptor 4, v 99.1 2.2E-10 7.5E-15 90.7 8.4 88 83-179 76-164 (276)
70 1xku_A Decorin; proteoglycan, 99.1 1.7E-10 6E-15 93.5 7.6 88 84-182 193-280 (330)
71 4ezg_A Putative uncharacterize 99.1 1.9E-10 6.6E-15 86.9 7.1 88 83-181 66-153 (197)
72 1wwl_A Monocyte differentiatio 99.1 3.6E-11 1.2E-15 97.2 3.2 62 111-177 149-214 (312)
73 2z81_A CD282 antigen, TOLL-lik 99.1 1E-10 3.5E-15 100.7 6.2 91 83-182 50-141 (549)
74 3zyi_A Leucine-rich repeat-con 99.1 2.7E-10 9.2E-15 96.4 8.6 70 107-182 214-283 (452)
75 4ay9_X Follicle-stimulating ho 99.1 1.9E-10 6.6E-15 94.4 7.1 104 70-182 9-121 (350)
76 3zyj_A Leucine-rich repeat-con 99.1 3E-10 1E-14 95.9 8.3 70 107-182 203-272 (440)
77 2xwt_C Thyrotropin receptor; s 99.1 9.7E-11 3.3E-15 90.9 4.8 90 83-182 31-122 (239)
78 2z7x_B TOLL-like receptor 1, v 99.1 1.1E-10 3.7E-15 100.2 5.5 84 83-178 45-129 (520)
79 2ft3_A Biglycan; proteoglycan, 99.1 2.9E-10 9.9E-15 92.4 7.7 98 70-177 33-160 (332)
80 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 2.8E-10 9.4E-15 98.8 8.0 83 84-178 77-160 (562)
81 2ft3_A Biglycan; proteoglycan, 99.1 1.8E-10 6.3E-15 93.6 6.5 88 84-182 194-281 (332)
82 1ziw_A TOLL-like receptor 3; i 99.1 3E-10 1E-14 100.4 8.1 71 107-182 69-139 (680)
83 2z7x_B TOLL-like receptor 1, v 99.1 3E-10 1E-14 97.4 7.9 91 83-182 324-417 (520)
84 1a9n_A U2A', U2A'; complex (nu 99.1 3.6E-10 1.2E-14 84.0 7.2 86 83-182 19-105 (176)
85 2z66_A Variable lymphocyte rec 99.1 3.1E-10 1.1E-14 91.0 7.4 68 107-179 146-214 (306)
86 1xku_A Decorin; proteoglycan, 99.1 4.1E-10 1.4E-14 91.3 8.1 100 69-177 30-158 (330)
87 3j0a_A TOLL-like receptor 5; m 99.0 2.3E-10 7.8E-15 104.1 7.2 91 83-182 73-166 (844)
88 2z63_A TOLL-like receptor 4, v 99.0 3.5E-10 1.2E-14 97.6 7.2 71 107-182 466-536 (570)
89 4ecn_A Leucine-rich repeat pro 99.0 5.6E-10 1.9E-14 102.2 8.8 88 84-183 729-824 (876)
90 1wwl_A Monocyte differentiatio 99.0 4.3E-10 1.5E-14 90.9 7.1 92 83-181 149-245 (312)
91 2z63_A TOLL-like receptor 4, v 99.0 4.2E-10 1.4E-14 97.1 7.4 72 106-182 440-512 (570)
92 3a79_B TLR6, VLRB.59, TOLL-lik 99.0 6.7E-10 2.3E-14 96.4 8.2 90 83-181 353-445 (562)
93 3o6n_A APL1; leucine-rich repe 99.0 9E-10 3.1E-14 91.3 8.6 66 107-177 113-178 (390)
94 3oja_B Anopheles plasmodium-re 99.0 1E-09 3.4E-14 96.2 9.3 87 83-178 99-185 (597)
95 2id5_A Lingo-1, leucine rich r 99.0 6.1E-10 2.1E-14 94.6 7.5 87 83-178 56-142 (477)
96 3oja_A Leucine-rich immune mol 99.0 4.1E-10 1.4E-14 96.7 6.5 106 70-183 109-232 (487)
97 3cvr_A Invasion plasmid antige 99.0 3.3E-10 1.1E-14 99.4 5.5 101 59-177 34-153 (571)
98 3t6q_A CD180 antigen; protein- 99.0 1.7E-09 5.8E-14 94.3 9.9 90 84-183 255-344 (606)
99 1ziw_A TOLL-like receptor 3; i 99.0 8.5E-10 2.9E-14 97.5 8.0 86 84-178 74-159 (680)
100 4glp_A Monocyte differentiatio 99.0 8E-10 2.7E-14 89.1 6.7 91 83-181 145-241 (310)
101 2xwt_C Thyrotropin receptor; s 98.9 7.1E-10 2.4E-14 86.0 4.9 90 83-182 55-173 (239)
102 3oja_A Leucine-rich immune mol 98.9 2.4E-09 8.3E-14 91.9 7.8 66 109-181 189-255 (487)
103 4fmz_A Internalin; leucine ric 98.9 3.3E-09 1.1E-13 86.2 7.8 68 107-181 261-328 (347)
104 2z80_A TOLL-like receptor 2, v 98.9 2E-09 6.9E-14 88.1 6.3 83 83-175 76-160 (353)
105 4fmz_A Internalin; leucine ric 98.9 2.8E-09 9.7E-14 86.6 6.2 82 83-177 265-346 (347)
106 3o53_A Protein LRIM1, AGAP0063 98.9 1.5E-09 5.1E-14 87.8 4.3 88 83-182 144-231 (317)
107 1h6t_A Internalin B; cell adhe 98.8 7.2E-09 2.5E-13 83.0 8.1 40 136-177 152-191 (291)
108 4glp_A Monocyte differentiatio 98.8 2.4E-09 8.3E-14 86.2 5.1 90 84-178 92-183 (310)
109 3o53_A Protein LRIM1, AGAP0063 98.8 7.3E-09 2.5E-13 83.8 7.4 81 84-177 170-250 (317)
110 1h6t_A Internalin B; cell adhe 98.8 1.2E-08 4.2E-13 81.7 8.1 64 107-179 108-171 (291)
111 1xeu_A Internalin C; cellular 98.8 2E-08 6.8E-13 79.4 9.1 42 135-178 123-164 (263)
112 1xeu_A Internalin C; cellular 98.8 7.2E-09 2.5E-13 81.9 6.4 64 107-179 124-187 (263)
113 1jl5_A Outer protein YOPM; leu 98.8 4E-09 1.4E-13 89.8 5.2 66 110-184 336-418 (454)
114 1h6u_A Internalin H; cell adhe 98.8 1.5E-08 5E-13 81.8 8.2 41 136-178 169-209 (308)
115 1m9s_A Internalin B; cell inva 98.8 1.4E-08 4.7E-13 89.6 8.7 40 136-177 149-188 (605)
116 3bz5_A Internalin-J, INLJ; leu 98.8 1.5E-08 5.1E-13 86.3 8.5 80 83-181 64-143 (457)
117 1m9s_A Internalin B; cell inva 98.8 1.7E-08 6E-13 88.9 8.8 83 84-181 88-170 (605)
118 1h6u_A Internalin H; cell adhe 98.8 1.7E-08 5.7E-13 81.5 8.0 80 83-177 85-164 (308)
119 3g06_A SSPH2 (leucine-rich rep 98.7 1.3E-08 4.5E-13 90.0 7.2 63 110-182 240-302 (622)
120 1o6v_A Internalin A; bacterial 98.7 1.7E-08 5.9E-13 85.6 7.7 42 135-178 348-389 (466)
121 2ast_B S-phase kinase-associat 98.7 7.2E-09 2.5E-13 83.8 4.6 85 84-178 71-157 (336)
122 3cvr_A Invasion plasmid antige 98.7 1.1E-08 3.8E-13 89.7 6.0 62 111-182 180-248 (571)
123 3rw6_A Nuclear RNA export fact 98.7 1.2E-08 4E-13 81.4 5.4 67 109-182 168-238 (267)
124 1jl5_A Outer protein YOPM; leu 98.7 3.7E-08 1.3E-12 83.8 8.3 78 84-178 132-209 (454)
125 1ds9_A Outer arm dynein; leuci 98.7 3.6E-10 1.2E-14 85.5 -3.9 92 83-182 48-158 (198)
126 2ast_B S-phase kinase-associat 98.7 1.3E-09 4.4E-14 88.2 -0.9 97 69-181 36-135 (336)
127 1o6v_A Internalin A; bacterial 98.7 5.2E-08 1.8E-12 82.7 8.2 61 109-178 263-323 (466)
128 2ca6_A RAN GTPase-activating p 98.7 7.2E-09 2.5E-13 85.8 2.6 40 139-178 273-317 (386)
129 2ca6_A RAN GTPase-activating p 98.6 5.4E-09 1.9E-13 86.5 1.3 40 137-176 91-134 (386)
130 3bz5_A Internalin-J, INLJ; leu 98.6 1.1E-07 3.6E-12 81.0 9.0 59 109-178 189-247 (457)
131 1ds9_A Outer arm dynein; leuci 98.6 7.8E-10 2.7E-14 83.6 -4.0 65 106-178 43-107 (198)
132 3goz_A Leucine-rich repeat-con 98.6 8.8E-09 3E-13 84.8 1.8 86 84-178 52-152 (362)
133 3g06_A SSPH2 (leucine-rich rep 98.6 2.8E-08 9.5E-13 87.9 3.5 34 58-96 12-53 (622)
134 3rw6_A Nuclear RNA export fact 98.5 1.6E-08 5.4E-13 80.7 -0.7 105 68-178 76-210 (267)
135 1z7x_W Ribonuclease inhibitor; 98.4 1.6E-08 5.6E-13 85.0 -0.9 67 108-179 338-413 (461)
136 3goz_A Leucine-rich repeat-con 98.4 5.1E-08 1.7E-12 80.1 1.2 94 83-181 80-184 (362)
137 3un9_A NLR family member X1; l 98.3 7.9E-08 2.7E-12 79.9 -0.8 65 109-178 181-253 (372)
138 1z7x_W Ribonuclease inhibitor; 98.2 1.7E-07 5.8E-12 78.7 0.5 90 84-178 86-184 (461)
139 3un9_A NLR family member X1; l 98.1 7.6E-07 2.6E-11 73.9 1.7 64 110-178 154-225 (372)
140 4ay9_X Follicle-stimulating ho 98.1 3.6E-06 1.2E-10 68.8 5.6 64 83-154 54-118 (350)
141 3sb4_A Hypothetical leucine ri 98.1 4.9E-06 1.7E-10 67.3 6.0 90 83-184 226-316 (329)
142 1io0_A Tropomodulin; LRR prote 98.0 4.9E-07 1.7E-11 67.8 -0.6 90 83-177 65-164 (185)
143 1io0_A Tropomodulin; LRR prote 98.0 6.9E-07 2.4E-11 66.9 -0.0 92 82-178 35-137 (185)
144 3ogk_B Coronatine-insensitive 97.8 7.9E-06 2.7E-10 70.6 3.2 65 110-179 462-528 (592)
145 3e4g_A ATP synthase subunit S, 97.6 3.8E-05 1.3E-09 57.3 3.1 84 83-175 61-150 (176)
146 3ogk_B Coronatine-insensitive 97.5 3.8E-05 1.3E-09 66.3 2.5 65 109-178 162-234 (592)
147 3rfe_A Platelet glycoprotein I 97.4 0.00039 1.3E-08 49.0 6.1 55 87-153 12-68 (130)
148 2ra8_A Uncharacterized protein 97.3 5.1E-05 1.8E-09 62.7 0.7 40 138-177 277-320 (362)
149 2p1m_B Transport inhibitor res 97.2 7.7E-05 2.6E-09 64.3 1.1 63 110-177 455-519 (594)
150 2p1m_B Transport inhibitor res 97.1 0.00013 4.4E-09 62.9 1.8 66 108-179 429-496 (594)
151 3sb4_A Hypothetical leucine ri 97.0 0.00087 3E-08 53.9 5.2 78 83-171 250-328 (329)
152 3rfe_A Platelet glycoprotein I 96.9 0.002 7E-08 45.2 6.2 55 115-176 12-67 (130)
153 4fdw_A Leucine rich hypothetic 96.3 0.0079 2.7E-07 50.1 6.7 46 134-182 317-362 (401)
154 3e4g_A ATP synthase subunit S, 96.2 0.0028 9.5E-08 47.1 3.0 62 111-177 61-128 (176)
155 1pgv_A TMD-1, tropomodulin TMD 95.9 0.001 3.5E-08 50.4 -0.4 93 83-176 70-169 (197)
156 2ra8_A Uncharacterized protein 95.6 0.0075 2.6E-07 49.6 3.6 70 109-178 217-293 (362)
157 4fdw_A Leucine rich hypothetic 95.6 0.021 7.3E-07 47.4 6.2 72 105-183 265-340 (401)
158 1pgv_A TMD-1, tropomodulin TMD 95.4 0.011 3.8E-07 44.6 3.5 92 82-174 40-136 (197)
159 4gt6_A Cell surface protein; l 92.9 0.36 1.2E-05 39.4 7.8 64 105-176 305-369 (394)
160 4fs7_A Uncharacterized protein 92.5 0.2 6.9E-06 40.9 5.7 62 105-174 314-376 (394)
161 4h09_A Hypothetical leucine ri 92.3 0.21 7.1E-06 40.5 5.6 61 106-173 281-342 (379)
162 4h09_A Hypothetical leucine ri 91.3 0.56 1.9E-05 37.8 7.1 70 106-183 258-327 (379)
163 4gt6_A Cell surface protein; l 89.7 0.77 2.6E-05 37.4 6.6 67 106-182 283-350 (394)
164 4fs7_A Uncharacterized protein 85.5 1.1 3.9E-05 36.4 5.2 67 107-183 293-360 (394)
165 3ox7_P MH027; urokinase-type p 35.5 13 0.00043 17.1 0.7 10 67-76 5-14 (23)
166 2lz0_A Uncharacterized protein 28.7 1.1E+02 0.0038 19.5 4.9 39 105-149 14-52 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=2.2e-23 Score=169.78 Aligned_cols=142 Identities=27% Similarity=0.451 Sum_probs=93.0
Q ss_pred CCcHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCC--CcceeecCCCC--CCEEEEEcCCCCCCCCCCCCCC
Q 036330 29 GCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCR--WEQVKCVNATT--RRVKELSLDGITLGANSGFLNL 104 (187)
Q Consensus 29 ~~~~~~~~~Ll~~k~~~~~~~p~~~~~~~l~~W~~~~~~~~C~--w~gv~C~~~~~--~~v~~L~L~~~~l~~~~~~~~~ 104 (187)
.|.++|++||++||+++. +| . .+.+|+.+ .+||. |.||.|+. .. ++|++|+|+++++++.. .++
T Consensus 2 ~c~~~~~~aL~~~k~~~~--~~----~-~l~~W~~~--~~~C~~~w~gv~C~~-~~~~~~l~~L~L~~~~l~~~~-~~~- 69 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG--NP----T-TLSSWLPT--TDCCNRTWLGVLCDT-DTQTYRVNNLDLSGLNLPKPY-PIP- 69 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT--CC----G-GGTTCCTT--SCTTTTCSTTEEECC-SSSCCCEEEEEEECCCCSSCE-ECC-
T ss_pred CCCHHHHHHHHHHHHhcC--Cc----c-cccCCCCC--CCCCcCCCcceEeCC-CCCCceEEEEECCCCCccCCc-ccC-
Confidence 588999999999999996 45 2 58899765 78998 99999986 22 78999999999994300 122
Q ss_pred ccCcCCCCCcEEEccC-CccccccCCC-------------------ccccccCCCCCCCEEEccCCCCCCCChHHhhcCC
Q 036330 105 SMFLPFQELESLDLSY-NSFYGVYEKE-------------------GMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTII 164 (187)
Q Consensus 105 ~~l~~l~~L~~L~Ls~-N~l~g~ip~~-------------------~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~ 164 (187)
..+..+++|++|++++ |.+.+.+|.. ..|..+..+++|++|++++|+++|.+|..++.++
T Consensus 70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence 2355666666666663 6666666610 0014455555555555555555555555555555
Q ss_pred CCCEEEcccccccccCCC
Q 036330 165 SLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 165 ~L~~L~Ls~N~l~G~iP~ 182 (187)
+|++|++++|+++|.+|.
T Consensus 150 ~L~~L~L~~N~l~~~~p~ 167 (313)
T 1ogq_A 150 NLVGITFDGNRISGAIPD 167 (313)
T ss_dssp TCCEEECCSSCCEEECCG
T ss_pred CCCeEECcCCcccCcCCH
Confidence 555555555555555553
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=3.8e-22 Score=179.94 Aligned_cols=137 Identities=29% Similarity=0.358 Sum_probs=100.0
Q ss_pred CCCcHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCCCCCCcceeecCCCCCCEEEEEcCCCCCCCC----CC-C-
Q 036330 28 RGCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDEMSDCCRWEQVKCVNATTRRVKELSLDGITLGAN----SG-F- 101 (187)
Q Consensus 28 ~~~~~~~~~~Ll~~k~~~~~~~p~~~~~~~l~~W~~~~~~~~C~w~gv~C~~~~~~~v~~L~L~~~~l~~~----~~-~- 101 (187)
..+.++|++||++||+++. || . .+.+|+.+ .+||+|.||+|+. ++|+.|+|+++++.+. .+ .
T Consensus 7 ~~~~~~~~~all~~k~~~~--~~----~-~l~~W~~~--~~~C~w~gv~C~~---~~v~~L~L~~~~l~g~~~~l~~~l~ 74 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLP--DK----N-LLPDWSSN--KNPCTFDGVTCRD---DKVTSIDLSSKPLNVGFSAVSSSLL 74 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCS--CT----T-SSTTCCTT--SCGGGSTTEEEET---TEEEEEECTTSCCCEEHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHhhCC--Cc----c-cccCCCCC--CCCcCCcceEECC---CcEEEEECCCCCcCCccCccChhHh
Confidence 3456889999999999997 56 3 68999855 7899999999984 7999999999988431 00 0
Q ss_pred ----------------CCCccCcCCCCCcEEEccCCccccccCCCcccc--ccCCCCCCCEEEccCCCCCCCChHHh-hc
Q 036330 102 ----------------LNLSMFLPFQELESLDLSYNSFYGVYEKEGMYL--SIGSLKWLKILNLYSNNVNNSLLPSL-TT 162 (187)
Q Consensus 102 ----------------~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~--~~~~l~~L~~L~Ls~N~l~G~iP~~l-~~ 162 (187)
..+..+..+++|++|||++|.++|.+| . .++++++|++|+|++|++++.+|..+ .+
T Consensus 75 ~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 149 (768)
T 3rgz_A 75 SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVT-----TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK 149 (768)
T ss_dssp TCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGG-----GGGGGGGCTTCCEEECCSSEEECCSSCCSCCC
T ss_pred ccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCC-----ChHHHhCCCCCCEEECcCCccCCcCCHHHhcc
Confidence 001346778888999999998888887 5 66777777777777777766666554 55
Q ss_pred CCCCCEEEcccccccccCC
Q 036330 163 IISLTNLSLGYCGIEGFIP 181 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G~iP 181 (187)
+++|++|++++|+++|.+|
T Consensus 150 l~~L~~L~Ls~n~l~~~~~ 168 (768)
T 3rgz_A 150 LNSLEVLDLSANSISGANV 168 (768)
T ss_dssp CTTCSEEECCSSCCEEETH
T ss_pred CCCCCEEECCCCccCCcCC
Confidence 6666666666666665544
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=2.7e-20 Score=164.79 Aligned_cols=137 Identities=19% Similarity=0.169 Sum_probs=104.4
Q ss_pred cHHHHHHHHHHHhhccccCCCCCC----CCCCCCCCCCCCCCCCCC---cceeecCCCCCCEEEEEcCCCCCCCCCCCCC
Q 036330 31 LETERTALLEIKRFFIAVRDTGYK----DEILTSWVDDEMSDCCRW---EQVKCVNATTRRVKELSLDGITLGANSGFLN 103 (187)
Q Consensus 31 ~~~~~~~Ll~~k~~~~~~~p~~~~----~~~l~~W~~~~~~~~C~w---~gv~C~~~~~~~v~~L~L~~~~l~~~~~~~~ 103 (187)
...|++||.++|+++.+ +.+.. .....+|+.+ .++|.| .||+|+. .++|++|+|++++++ +.++
T Consensus 28 ~~~d~~aL~~~~~~~~~--~~w~~~~~~~~~~~~W~~~--~~~c~w~~~~GV~C~~--~~~V~~L~L~~~~l~---g~lp 98 (636)
T 4eco_A 28 YIKDYLALKEIWDALNG--KNWSQQGFGTQPGANWNFN--KELDMWGAQPGVSLNS--NGRVTGLSLEGFGAS---GRVP 98 (636)
T ss_dssp HHHHHHHHHHHHHHTTG--GGCCCCC------CCCCCS--SCGGGTTCCTTEEECT--TCCEEEEECTTSCCE---EEEC
T ss_pred HHHHHHHHHHHHHHcCC--CCcccCCcCCccCCCCCCC--CCcccccCCCCeEEcC--CCCEEEEEecCcccC---CcCC
Confidence 45799999999999873 32110 0123479876 899999 9999987 489999999999993 3343
Q ss_pred CccCcCCCCCcEEEccCCcc------------------------------------------------------------
Q 036330 104 LSMFLPFQELESLDLSYNSF------------------------------------------------------------ 123 (187)
Q Consensus 104 ~~~l~~l~~L~~L~Ls~N~l------------------------------------------------------------ 123 (187)
+.+.+|++|++|+|++|.+
T Consensus 99 -~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~ 177 (636)
T 4eco_A 99 -DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177 (636)
T ss_dssp -GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC
T ss_pred -hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccc
Confidence 3478888888888888843
Q ss_pred ------------------ccccCCCccccccCCCCCCCEEEccCCCCCCC-----------------ChHHhh--cCCCC
Q 036330 124 ------------------YGVYEKEGMYLSIGSLKWLKILNLYSNNVNNS-----------------LLPSLT--TIISL 166 (187)
Q Consensus 124 ------------------~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~-----------------iP~~l~--~l~~L 166 (187)
+| +| ..++++++|++|+|++|+++|. +|+.++ ++++|
T Consensus 178 ~~~~~l~~l~l~~~~n~l~~-ip-----~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L 251 (636)
T 4eco_A 178 SSRITLKDTQIGQLSNNITF-VS-----KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDL 251 (636)
T ss_dssp CCCCCCCTTTTTCCSCEEEE-EC-----GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTC
T ss_pred ccccchhhhhhccccCCCcc-CC-----HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCC
Confidence 33 55 6788888888888888888875 888877 88888
Q ss_pred CEEEcccccccccCCCC
Q 036330 167 TNLSLGYCGIEGFIPNQ 183 (187)
Q Consensus 167 ~~L~Ls~N~l~G~iP~~ 183 (187)
++|+|++|++.|.+|.+
T Consensus 252 ~~L~L~~n~l~~~~p~~ 268 (636)
T 4eco_A 252 TDVEVYNCPNLTKLPTF 268 (636)
T ss_dssp CEEEEECCTTCSSCCTT
T ss_pred CEEEecCCcCCccChHH
Confidence 88888888888888864
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=1.3e-19 Score=165.56 Aligned_cols=137 Identities=20% Similarity=0.178 Sum_probs=99.2
Q ss_pred CCcHHHHHHHHHHHhhccccCCCCCCCCCCCCCCCCC---CCCC--CCC------------cceeecCCCCCCEEEEEcC
Q 036330 29 GCLETERTALLEIKRFFIAVRDTGYKDEILTSWVDDE---MSDC--CRW------------EQVKCVNATTRRVKELSLD 91 (187)
Q Consensus 29 ~~~~~~~~~Ll~~k~~~~~~~p~~~~~~~l~~W~~~~---~~~~--C~w------------~gv~C~~~~~~~v~~L~L~ 91 (187)
++..+|++||++||+++.+ | +|+.+. ..+| |.| .||.|+. .++|++|+|+
T Consensus 265 ~~~~~d~~ALl~~k~~l~~--~---------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~--~~~V~~L~Ls 331 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDG--K---------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN--NGRVTGLSLA 331 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTG--G---------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT--TSCEEEEECT
T ss_pred ccchHHHHHHHHHHHHcCC--C---------CCCcCCCcccccCCccccccccccccccCcCceEecC--CCCEEEEECc
Confidence 3456899999999999962 2 676542 1355 999 9999986 5899999999
Q ss_pred CCCCCCCCCCCCCccCcCCCCCcEEEc-cCCccccccCCC----------------------------------------
Q 036330 92 GITLGANSGFLNLSMFLPFQELESLDL-SYNSFYGVYEKE---------------------------------------- 130 (187)
Q Consensus 92 ~~~l~~~~~~~~~~~l~~l~~L~~L~L-s~N~l~g~ip~~---------------------------------------- 130 (187)
++++. +.++ +.+++|++|+.|+| ++|.++|..|..
T Consensus 332 ~~~L~---G~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~ 407 (876)
T 4ecn_A 332 GFGAK---GRVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDA 407 (876)
T ss_dssp TTCCE---EEEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred cCCCC---CcCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHH
Confidence 99993 3333 34778888888888 777766651100
Q ss_pred -------------------------------ccccccCCCCCCCEEEccCCCCCC-----------------CChHHhh-
Q 036330 131 -------------------------------GMYLSIGSLKWLKILNLYSNNVNN-----------------SLLPSLT- 161 (187)
Q Consensus 131 -------------------------------~~~~~~~~l~~L~~L~Ls~N~l~G-----------------~iP~~l~- 161 (187)
++|..++++++|++|+|++|+++| .+|+.++
T Consensus 408 l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f 487 (876)
T 4ecn_A 408 INRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487 (876)
T ss_dssp HHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCG
T ss_pred hhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhh
Confidence 023667777777777777777777 3777766
Q ss_pred -cCCCCCEEEcccccccccCCC
Q 036330 162 -TIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 162 -~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
++++|++|+|++|++.|.+|.
T Consensus 488 ~~L~~L~~L~Ls~N~l~~~iP~ 509 (876)
T 4ecn_A 488 SNLKDLTDVELYNCPNMTQLPD 509 (876)
T ss_dssp GGCTTCCEEEEESCTTCCSCCG
T ss_pred ccCCCCCEEECcCCCCCccChH
Confidence 777777777777777777774
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.73 E-value=1.8e-18 Score=141.75 Aligned_cols=137 Identities=16% Similarity=0.191 Sum_probs=111.3
Q ss_pred CcHHHHHHHHHHHhhccccCCCCCCCCCCCCCCC--CCCCCCCCCcceeecC-------CCCCCEEEEEcCCCCCCCCCC
Q 036330 30 CLETERTALLEIKRFFIAVRDTGYKDEILTSWVD--DEMSDCCRWEQVKCVN-------ATTRRVKELSLDGITLGANSG 100 (187)
Q Consensus 30 ~~~~~~~~Ll~~k~~~~~~~p~~~~~~~l~~W~~--~~~~~~C~w~gv~C~~-------~~~~~v~~L~L~~~~l~~~~~ 100 (187)
+..+|+++|++||+.+.. ++ ......|.. ....++|.|.|+.|.. ....+|+.|+|++++++
T Consensus 24 ~~~~~~~aLl~~k~~~~~-~~----~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~---- 94 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNA-DR----NRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP---- 94 (328)
T ss_dssp CCCCHHHHHHHHHHHHHH-CC----TTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS----
T ss_pred cCchHHHHHHHHHHhccC-Cc----hhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch----
Confidence 456799999999998854 44 245677831 1137899999999952 12468999999999994
Q ss_pred CCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccC
Q 036330 101 FLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFI 180 (187)
Q Consensus 101 ~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~i 180 (187)
.++. .+..+++|++|+|++|.++ .+| ..++.+++|++|+|++|+++ .+|..++++++|++|++++|++.|.+
T Consensus 95 ~lp~-~l~~l~~L~~L~L~~n~l~-~lp-----~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~ 166 (328)
T 4fcg_A 95 QFPD-QAFRLSHLQHMTIDAAGLM-ELP-----DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTEL 166 (328)
T ss_dssp SCCS-CGGGGTTCSEEEEESSCCC-CCC-----SCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCC
T ss_pred hcCh-hhhhCCCCCEEECCCCCcc-chh-----HHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCcccc
Confidence 2332 3667899999999999999 888 78999999999999999999 88999999999999999999999999
Q ss_pred CCC
Q 036330 181 PNQ 183 (187)
Q Consensus 181 P~~ 183 (187)
|..
T Consensus 167 p~~ 169 (328)
T 4fcg_A 167 PEP 169 (328)
T ss_dssp CSC
T ss_pred Chh
Confidence 875
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.60 E-value=7.8e-16 Score=138.75 Aligned_cols=95 Identities=24% Similarity=0.360 Sum_probs=86.3
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
..++.|+|++|.+++ .++ ..++.++.|+.|+|++|.++|.+| ..++.+++|++|||++|+++|.+|..+++
T Consensus 632 ~~L~~LdLs~N~l~g---~ip-~~l~~l~~L~~L~Ls~N~l~g~ip-----~~l~~L~~L~~LdLs~N~l~g~ip~~l~~ 702 (768)
T 3rgz_A 632 GSMMFLDMSYNMLSG---YIP-KEIGSMPYLFILNLGHNDISGSIP-----DEVGDLRGLNILDLSSNKLDGRIPQAMSA 702 (768)
T ss_dssp BCCCEEECCSSCCBS---CCC-GGGGGCTTCCEEECCSSCCCSCCC-----GGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred ccccEEECcCCcccc---cCC-HHHhccccCCEEeCcCCccCCCCC-----hHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence 468899999999943 233 458899999999999999999999 89999999999999999999999999999
Q ss_pred CCCCCEEEcccccccccCCCCCCC
Q 036330 163 IISLTNLSLGYCGIEGFIPNQGMF 186 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G~iP~~~~~ 186 (187)
+++|++|++++|+++|.||..+.|
T Consensus 703 l~~L~~L~ls~N~l~g~iP~~~~~ 726 (768)
T 3rgz_A 703 LTMLTEIDLSNNNLSGPIPEMGQF 726 (768)
T ss_dssp CCCCSEEECCSSEEEEECCSSSSG
T ss_pred CCCCCEEECcCCcccccCCCchhh
Confidence 999999999999999999987654
No 7
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.56 E-value=2e-14 Score=111.87 Aligned_cols=107 Identities=19% Similarity=0.215 Sum_probs=64.3
Q ss_pred CCCCCCCCCCCCCCcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCcc-------
Q 036330 59 TSWVDDEMSDCCRWEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSF------- 123 (187)
Q Consensus 59 ~~W~~~~~~~~C~w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l------- 123 (187)
..|... ...|+|.+|.|... ....++.|+|++|.+++..+ ..+..+++|++|+|++|.+
T Consensus 10 ~~~~~~--~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~N~l~~i~~~~ 83 (229)
T 3e6j_A 10 SAACPS--QCSCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEP----GVFDSLINLKELYLGSNQLGALPVGV 83 (229)
T ss_dssp -CCCCT--TCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCT----TTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred hccCCC--CCEEeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCH----HHhhCccCCcEEECCCCCCCCcChhh
Confidence 344443 68999999999751 12357889999988853321 2244445555555555554
Q ss_pred -----------------ccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330 124 -----------------YGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 124 -----------------~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
++..+ ..+..+++|++|+|++|+++ .+|..+..+++|++|+|++|+|+
T Consensus 84 ~~~l~~L~~L~Ls~N~l~~l~~-----~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 84 FDSLTQLTVLDLGTNQLTVLPS-----AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp TTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred cccCCCcCEEECCCCcCCccCh-----hHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence 43222 33455666666666666666 56666666666666666666666
No 8
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.54 E-value=2e-14 Score=108.96 Aligned_cols=106 Identities=22% Similarity=0.268 Sum_probs=73.1
Q ss_pred CCCCcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCC
Q 036330 69 CCRWEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLK 140 (187)
Q Consensus 69 ~C~w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~ 140 (187)
.|.|+.+.|... ....++.|++++|.+++.. +...+..+++|++|+|++|.+++..| ..+..++
T Consensus 7 ~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~ 78 (192)
T 1w8a_A 7 HCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRIS---SDGLFGRLPHLVKLELKRNQLTGIEP-----NAFEGAS 78 (192)
T ss_dssp EEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBC---CSCSGGGCTTCCEEECCSSCCCCBCT-----TTTTTCT
T ss_pred EECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccC---CccccccCCCCCEEECCCCCCCCcCH-----hHcCCcc
Confidence 366777777641 1126788888888873221 11236677888888888888887666 6677777
Q ss_pred CCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330 141 WLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 141 ~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
+|++|+|++|++++..|..+.++++|++|+|++|++++.+|.
T Consensus 79 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 120 (192)
T 1w8a_A 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120 (192)
T ss_dssp TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH
Confidence 777777777777776666677777777777777777766664
No 9
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=1.1e-13 Score=103.13 Aligned_cols=104 Identities=21% Similarity=0.321 Sum_probs=75.9
Q ss_pred CCCCcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCC
Q 036330 69 CCRWEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLK 140 (187)
Q Consensus 69 ~C~w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~ 140 (187)
.|+|.++.|... ....++.|+++++.+++ ++...+..+++|++|++++|.+++..+ ..+..++
T Consensus 6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~ 76 (177)
T 2o6r_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS----LPHGVFDKLTQLTKLSLSQNQIQSLPD-----GVFDKLT 76 (177)
T ss_dssp EEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCCT-----TTTTTCT
T ss_pred EeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccE----eCHHHhcCcccccEEECCCCcceEeCh-----hHccCCC
Confidence 467999998641 12368899999998842 233446778888888888888885444 4567788
Q ss_pred CCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330 141 WLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 141 ~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
+|++|++++|++++..|..+..+++|++|++++|+++ .+|.
T Consensus 77 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~ 117 (177)
T 2o6r_A 77 KLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPD 117 (177)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCT
T ss_pred ccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCH
Confidence 8888888888888666666777888888888888887 4554
No 10
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.50 E-value=9.4e-14 Score=103.39 Aligned_cols=103 Identities=20% Similarity=0.194 Sum_probs=83.8
Q ss_pred CCCcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCC
Q 036330 70 CRWEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKW 141 (187)
Q Consensus 70 C~w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~ 141 (187)
|.|+.+.|... ....++.|+|++|.+++ +.+..+..+++|++|+|++|.+++..+ ..+..+++
T Consensus 9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~----~~~~~~~~l~~L~~L~Ls~N~l~~l~~-----~~f~~l~~ 79 (170)
T 3g39_A 9 CSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITK----LEPGVFDRLTQLTRLDLDNNQLTVLPA-----GVFDKLTQ 79 (170)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCCT-----TTTTTCTT
T ss_pred cCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCc----cChhhhcCcccCCEEECCCCCcCccCh-----hhccCCCC
Confidence 67888888641 12467899999999953 333558889999999999999996544 56789999
Q ss_pred CCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCC
Q 036330 142 LKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIP 181 (187)
Q Consensus 142 L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP 181 (187)
|++|+|++|++++..|..+..+++|++|+|++|.+++..+
T Consensus 80 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 9999999999997666679999999999999999986543
No 11
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=2.2e-13 Score=103.85 Aligned_cols=106 Identities=19% Similarity=0.193 Sum_probs=57.2
Q ss_pred CCCCCcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCC---------
Q 036330 68 DCCRWEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKE--------- 130 (187)
Q Consensus 68 ~~C~w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~--------- 130 (187)
-.|.|.+|.|... ...+++.|+++++++++.. ...+..+++|++|++++|.+++..+..
T Consensus 5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (208)
T 2o6s_A 5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLP----NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY 80 (208)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCC----TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCC----hhhhcccccCcEEECCCCccCccChhhcCCCCCcCE
Confidence 3478999999641 1235788999988884322 233445555555555555555322200
Q ss_pred ---------cc-ccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330 131 ---------GM-YLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 131 ---------~~-~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
.+ +..+..+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus 81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred EECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence 00 023455555555555555555444444555555555555555555
No 12
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.45 E-value=3.7e-13 Score=102.21 Aligned_cols=104 Identities=27% Similarity=0.319 Sum_probs=83.5
Q ss_pred CCCCcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCC
Q 036330 69 CCRWEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLK 140 (187)
Q Consensus 69 ~C~w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~ 140 (187)
.|.|..+.|... ....++.|++++|.++ .++ ..+..+++|+.|+|++|.+++..+ ..|..++
T Consensus 9 ~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~----~ip-~~~~~l~~L~~L~Ls~N~i~~i~~-----~~f~~l~ 78 (193)
T 2wfh_A 9 TCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT----LVP-KELSNYKHLTLIDLSNNRISTLSN-----QSFSNMT 78 (193)
T ss_dssp EEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC----SCC-GGGGGCTTCCEEECCSSCCCCCCT-----TTTTTCT
T ss_pred EeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc----hhH-HHhhcccCCCEEECCCCcCCEeCH-----hHccCCC
Confidence 456777777641 1236889999999984 233 457889999999999999997666 6789999
Q ss_pred CCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCCC
Q 036330 141 WLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQ 183 (187)
Q Consensus 141 ~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~ 183 (187)
+|++|+|++|++++..|..|..+++|++|+|++|+++ .+|..
T Consensus 79 ~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~ 120 (193)
T 2wfh_A 79 QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEG 120 (193)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTT
T ss_pred CCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChh
Confidence 9999999999999877778999999999999999999 55653
No 13
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=4.3e-13 Score=103.69 Aligned_cols=71 Identities=25% Similarity=0.160 Sum_probs=42.1
Q ss_pred CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
+..+++|++|+|++|.+++..| ..+..+++|++|+|++|++++..|..+..+++|++|+|++|++++..|.
T Consensus 77 ~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 77 FEGASGVNEILLTSNRLENVQH-----KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCG-----GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred hCCCCCCCEEECCCCccCccCH-----hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence 3444555555555555544333 4466666666666666666666666666666666666666666654443
No 14
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=4.4e-13 Score=103.66 Aligned_cols=106 Identities=22% Similarity=0.284 Sum_probs=58.8
Q ss_pred CCCCcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCC----------
Q 036330 69 CCRWEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKE---------- 130 (187)
Q Consensus 69 ~C~w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~---------- 130 (187)
.|.|..+.|... ....++.|++++|.++.+ +...+..+++|++|+|++|.+++..|..
T Consensus 10 ~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i----~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L 85 (220)
T 2v9t_B 10 TCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVI----PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL 85 (220)
T ss_dssp EEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEE----CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEE
T ss_pred EECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCc----CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEE
Confidence 367888888641 113578888888887422 2223445555555555555555443400
Q ss_pred --------ccc-cccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccc
Q 036330 131 --------GMY-LSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEG 178 (187)
Q Consensus 131 --------~~~-~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G 178 (187)
.+| ..+..+++|++|+|++|++++..|..|..+++|++|+|++|++++
T Consensus 86 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred ECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE
Confidence 000 234555666666666666665555566666666666666666663
No 15
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.43 E-value=2.2e-13 Score=103.13 Aligned_cols=90 Identities=23% Similarity=0.246 Sum_probs=80.4
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
.+++.|+|++|.+++ +.+..+..+++|++|+|++|.+++..| ..+..+++|++|+|++|++++.+|..+..
T Consensus 54 ~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 124 (192)
T 1w8a_A 54 PHLVKLELKRNQLTG----IEPNAFEGASHIQELQLGENKIKEISN-----KMFLGLHQLKTLNLYDNQISCVMPGSFEH 124 (192)
T ss_dssp TTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSCCCCEECS-----SSSTTCTTCCEEECCSSCCCEECTTSSTT
T ss_pred CCCCEEECCCCCCCC----cCHhHcCCcccCCEEECCCCcCCccCH-----HHhcCCCCCCEEECCCCcCCeeCHHHhhc
Confidence 579999999999943 223558889999999999999998777 67999999999999999999999999999
Q ss_pred CCCCCEEEcccccccccCC
Q 036330 163 IISLTNLSLGYCGIEGFIP 181 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G~iP 181 (187)
+++|++|+|++|.+++..|
T Consensus 125 l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 125 LNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CTTCCEEECTTCCBCCSGG
T ss_pred CCCCCEEEeCCCCccCcCc
Confidence 9999999999999998765
No 16
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.42 E-value=5.7e-13 Score=104.61 Aligned_cols=64 Identities=20% Similarity=0.188 Sum_probs=33.4
Q ss_pred CCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330 109 PFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 109 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
.+++|++|++++|.+++..+ ..+..+++|++|+|++|++++..+..+..+++|++|+|++|+++
T Consensus 81 ~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 81 DLTELGTLGLANNQLASLPL-----GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCT-----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCCcCCEEECCCCcccccCh-----hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC
Confidence 34444444444444443222 34455566666666666665444444555666666666666665
No 17
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.41 E-value=1.1e-12 Score=103.92 Aligned_cols=106 Identities=23% Similarity=0.268 Sum_probs=54.5
Q ss_pred CCCCCCcceeecCC-------------------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCcccccc
Q 036330 67 SDCCRWEQVKCVNA-------------------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVY 127 (187)
Q Consensus 67 ~~~C~w~gv~C~~~-------------------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~i 127 (187)
.+.|.|.|+.|... ....++.|+++++.++. ++...+..+++|++|++++|.++. +
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~-i 76 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSS----LPSKAFHRLTKLRLLYLNDNKLQT-L 76 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSC----CCTTSSSSCTTCCEEECCSSCCSC-C
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCe----eCHHHhcCCCCCCEEECCCCccCe-e
Confidence 46788888777530 01134455555555521 112235556666666666666653 3
Q ss_pred CCC-------------------cc-ccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330 128 EKE-------------------GM-YLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 128 p~~-------------------~~-~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
|.. .+ +..+..+++|++|++++|++++..|..++.+++|++|++++|+++
T Consensus 77 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 77 PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146 (270)
T ss_dssp CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence 310 00 023445555555555555555544445555566666666666655
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.40 E-value=9.1e-13 Score=113.61 Aligned_cols=104 Identities=19% Similarity=0.129 Sum_probs=83.7
Q ss_pred CCCCcceeecCC----------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCC
Q 036330 69 CCRWEQVKCVNA----------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGS 138 (187)
Q Consensus 69 ~C~w~gv~C~~~----------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~ 138 (187)
.|.|.|+ |+.. ...+++.|++++|.+++ ..+..+..+++|++|++++|.+++..| ..+..
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~-----~~~~~ 72 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITY----IGHGDLRACANLQVLILKSSRINTIEG-----DAFYS 72 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCE----ECSSTTSSCTTCCEEECTTSCCCEECT-----TTTTT
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCc----cChhhhhcCCcccEEECCCCCcCccCh-----hhccc
Confidence 5889888 8641 12368999999999842 223457889999999999999998776 78889
Q ss_pred CCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccc-cCCC
Q 036330 139 LKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEG-FIPN 182 (187)
Q Consensus 139 l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G-~iP~ 182 (187)
+++|++|+|++|++++..|..++++++|++|++++|++++ .+|.
T Consensus 73 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 117 (549)
T 2z81_A 73 LGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117 (549)
T ss_dssp CTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC
T ss_pred cccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh
Confidence 9999999999999998777789999999999999999885 3443
No 19
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.38 E-value=9.6e-13 Score=101.73 Aligned_cols=91 Identities=19% Similarity=0.150 Sum_probs=54.6
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI 163 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l 163 (187)
.++.|+|++|.+++. .+...+..+++|++|+|++|.+++..+ ..+..+++|++|+|++|++++..|..+..+
T Consensus 33 ~~~~L~L~~N~l~~~---~~~~~~~~l~~L~~L~L~~N~i~~i~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 104 (220)
T 2v70_A 33 YTAELRLNNNEFTVL---EATGIFKKLPQLRKINFSNNKITDIEE-----GAFEGASGVNEILLTSNRLENVQHKMFKGL 104 (220)
T ss_dssp TCSEEECCSSCCCEE---CCCCCGGGCTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCSSCCCCCCGGGGTTC
T ss_pred CCCEEEcCCCcCCcc---CchhhhccCCCCCEEECCCCcCCEECH-----HHhCCCCCCCEEECCCCccCccCHhHhcCC
Confidence 345666666666311 111235566666666666666665444 456666666666666666666555566666
Q ss_pred CCCCEEEcccccccccCCC
Q 036330 164 ISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 164 ~~L~~L~Ls~N~l~G~iP~ 182 (187)
++|++|+|++|++++..|.
T Consensus 105 ~~L~~L~Ls~N~l~~~~~~ 123 (220)
T 2v70_A 105 ESLKTLMLRSNRITCVGND 123 (220)
T ss_dssp SSCCEEECTTSCCCCBCTT
T ss_pred cCCCEEECCCCcCCeECHh
Confidence 6666666666666654443
No 20
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.37 E-value=2.7e-12 Score=105.35 Aligned_cols=105 Identities=26% Similarity=0.220 Sum_probs=84.1
Q ss_pred CCCCCCcceeecCC----------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCcccccc
Q 036330 67 SDCCRWEQVKCVNA----------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSI 136 (187)
Q Consensus 67 ~~~C~w~gv~C~~~----------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~ 136 (187)
...|.|.|+ |+.. ...+++.|+++++.+++ ++...+..+++|++|++++|.+++..| ..+
T Consensus 27 ~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~ 96 (353)
T 2z80_A 27 SLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITY----ISNSDLQRCVNLQALVLTSNGINTIEE-----DSF 96 (353)
T ss_dssp CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCEECT-----TTT
T ss_pred CCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcc----cCHHHhccCCCCCEEECCCCccCccCH-----hhc
Confidence 567888887 6531 12368999999999842 333457889999999999999997766 678
Q ss_pred CCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330 137 GSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 137 ~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
..+++|++|++++|++++..+..++++++|++|++++|+++ .+|.
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~ 141 (353)
T 2z80_A 97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGE 141 (353)
T ss_dssp TTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCS
T ss_pred CCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCc
Confidence 99999999999999999655555899999999999999998 5665
No 21
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=3.8e-12 Score=95.07 Aligned_cols=88 Identities=18% Similarity=0.155 Sum_probs=71.0
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
..++.|+|++|.+++ +.+..+..+++|++|+|++|.|++..+ ..+..+++|++|+|++|++++..+..+..
T Consensus 33 ~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~i~~-----~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 103 (174)
T 2r9u_A 33 TDKQRLWLNNNQITK----LEPGVFDHLVNLQQLYFNSNKLTAIPT-----GVFDKLTQLTQLDLNDNHLKSIPRGAFDN 103 (174)
T ss_dssp TTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCcEEEeCCCCccc----cCHHHhcCCcCCCEEECCCCCCCccCh-----hHhCCcchhhEEECCCCccceeCHHHhcc
Confidence 467889999999843 223557889999999999999996433 45788999999999999999655556899
Q ss_pred CCCCCEEEccccccccc
Q 036330 163 IISLTNLSLGYCGIEGF 179 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G~ 179 (187)
+++|++|+|++|.++..
T Consensus 104 l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 104 LKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp CTTCSEEECCSSCBCTT
T ss_pred ccCCCEEEeCCCCcccc
Confidence 99999999999998843
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.36 E-value=6.5e-13 Score=112.00 Aligned_cols=103 Identities=21% Similarity=0.248 Sum_probs=52.1
Q ss_pred CCCCCcc--eeecCC-------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCC
Q 036330 68 DCCRWEQ--VKCVNA-------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGS 138 (187)
Q Consensus 68 ~~C~w~g--v~C~~~-------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~ 138 (187)
..|.|.+ +.|... ...+++.|+|+++.+++. .+..+..+++|++|++++|.+.+.+++ ..+..
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~~~~~i~~----~~~~~ 77 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAEL----NETSFSRLQDLQFLKVEQQTPGLVIRN----NTFRG 77 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEE----CTTTTSSCTTCCEEECCCCSTTCEECT----TTTTT
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcC----ChhHhccCccccEEECcCCcccceECc----ccccc
Confidence 3455554 667541 124688999999988422 123345555555555555555544431 23444
Q ss_pred CCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccc
Q 036330 139 LKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEG 178 (187)
Q Consensus 139 l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G 178 (187)
+++|++|+|++|++++..|..++++++|++|++++|+++|
T Consensus 78 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 117 (455)
T 3v47_A 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDG 117 (455)
T ss_dssp CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBT
T ss_pred cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCc
Confidence 4444444444444444444444444444444444444443
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.36 E-value=1.8e-12 Score=112.79 Aligned_cols=87 Identities=26% Similarity=0.251 Sum_probs=63.7
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
..++.|+|++|.++. ++...|.++++|++|||++|.|++..| ..|.++++|++|+|++|++++..|..|.+
T Consensus 52 ~~~~~LdLs~N~i~~----l~~~~f~~l~~L~~L~Ls~N~i~~i~~-----~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRH----LGSYSFFSFPELQVLDLSRCEIQTIED-----GAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp TTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCCCCEECT-----TTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred cCCCEEEeeCCCCCC----CCHHHHhCCCCCCEEECCCCcCCCcCh-----hHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 368999999999953 333557788888888888888886444 56777777777777777777544556777
Q ss_pred CCCCCEEEcccccccc
Q 036330 163 IISLTNLSLGYCGIEG 178 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G 178 (187)
+++|++|+|++|++++
T Consensus 123 L~~L~~L~Ls~N~l~~ 138 (635)
T 4g8a_A 123 LSSLQKLVAVETNLAS 138 (635)
T ss_dssp CTTCCEEECTTSCCCC
T ss_pred CCCCCEEECCCCcCCC
Confidence 7777777777777773
No 24
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.35 E-value=3.7e-13 Score=109.17 Aligned_cols=72 Identities=25% Similarity=0.365 Sum_probs=63.8
Q ss_pred CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCC-CCCEEEcccccccccCCCC
Q 036330 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTII-SLTNLSLGYCGIEGFIPNQ 183 (187)
Q Consensus 107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~-~L~~L~Ls~N~l~G~iP~~ 183 (187)
+..+++|++|++++|.+++.+| ..+..+++|++|++++|+++|.+|..++.++ +|++|++++|+++|.+|..
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p-----~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~ 193 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLP-----PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCC-----GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred HhCCCCCCEEeCCCCccCCcCC-----hHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH
Confidence 5566777777777777777777 8899999999999999999999999999998 9999999999999999864
No 25
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.34 E-value=1.7e-12 Score=106.02 Aligned_cols=72 Identities=24% Similarity=0.179 Sum_probs=61.1
Q ss_pred CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCCC
Q 036330 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQ 183 (187)
Q Consensus 107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~ 183 (187)
+..+++|++|++++|.+.+.+| ..++.+++|++|++++|++.+.+|..++++++|++|+|++|++.|.+|..
T Consensus 225 l~~l~~L~~L~Ls~n~~~~~~p-----~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 225 IHHLPKLEELDLRGCTALRNYP-----PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCBCC-----CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred hccCCCCCEEECcCCcchhhhH-----HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 5567777888888877777777 78888899999999998888899988999999999999999999888865
No 26
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.32 E-value=4.3e-12 Score=103.79 Aligned_cols=98 Identities=18% Similarity=0.180 Sum_probs=50.0
Q ss_pred CCCcceeecCC-C---------CCCEEEEEcCC-CCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCC
Q 036330 70 CRWEQVKCVNA-T---------TRRVKELSLDG-ITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGS 138 (187)
Q Consensus 70 C~w~gv~C~~~-~---------~~~v~~L~L~~-~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~ 138 (187)
|.|..|.|... . ..+++.|+|++ |.++ .++...|..+++|+.|+|++|.|++..| ..|.+
T Consensus 8 C~~~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~----~~~~~~~~~l~~L~~L~l~~N~l~~~~~-----~~~~~ 78 (347)
T 2ifg_A 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQ----HLELRDLRGLGELRNLTIVKSGLRFVAP-----DAFHF 78 (347)
T ss_dssp SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCC----EECGGGSCSCCCCSEEECCSSCCCEECT-----TGGGS
T ss_pred ccCCEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCC----CcChhHhccccCCCEEECCCCccceeCH-----HHhcC
Confidence 88888888651 0 01255555554 5552 1222334555555555555555555444 44555
Q ss_pred CCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330 139 LKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 139 l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
+++|++|+|++|+|++..|..+..++ |+.|+|.+|.|.
T Consensus 79 l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 79 TPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 55555555555555543222333333 555555555554
No 27
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.32 E-value=5.4e-12 Score=97.48 Aligned_cols=87 Identities=21% Similarity=0.231 Sum_probs=70.2
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
.+++.|+|++|.++ .++...|..+++|++|+|++|.+++..| ..+..+++|++|+|++|++++..+..+..
T Consensus 80 ~~L~~L~Ls~N~l~----~l~~~~f~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 150 (220)
T 2v9t_B 80 RSLNSLVLYGNKIT----ELPKSLFEGLFSLQLLLLNANKINCLRV-----DAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150 (220)
T ss_dssp SSCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred cCCCEEECCCCcCC----ccCHhHccCCCCCCEEECCCCCCCEeCH-----HHcCCCCCCCEEECCCCcCCEECHHHHhC
Confidence 34666666666663 2333446678888888888888887666 78999999999999999999877778999
Q ss_pred CCCCCEEEcccccccc
Q 036330 163 IISLTNLSLGYCGIEG 178 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G 178 (187)
+++|+.|+|++|.+..
T Consensus 151 l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 151 LRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CTTCCEEECCSSCEEC
T ss_pred CCCCCEEEeCCCCcCC
Confidence 9999999999999864
No 28
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.31 E-value=5e-12 Score=94.03 Aligned_cols=90 Identities=21% Similarity=0.170 Sum_probs=76.3
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
.+++.|++++|.+++ ++...+..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..+..+..
T Consensus 52 ~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~N~l~~~~~-----~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 122 (177)
T 2o6r_A 52 TQLTKLSLSQNQIQS----LPDGVFDKLTKLTILYLHENKLQSLPN-----GVFDKLTQLKELALDTNQLKSVPDGIFDR 122 (177)
T ss_dssp TTCSEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred ccccEEECCCCcceE----eChhHccCCCccCEEECCCCCccccCH-----HHhhCCcccCEEECcCCcceEeCHHHhcC
Confidence 579999999999943 333457789999999999999996655 56889999999999999999655555788
Q ss_pred CCCCCEEEcccccccccCC
Q 036330 163 IISLTNLSLGYCGIEGFIP 181 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G~iP 181 (187)
+++|++|++++|.+++..|
T Consensus 123 l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 123 LTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CTTCCEEECCSSCBCCCHH
T ss_pred CcccCEEEecCCCeeccCc
Confidence 9999999999999998765
No 29
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.30 E-value=9.6e-12 Score=96.56 Aligned_cols=89 Identities=20% Similarity=0.120 Sum_probs=74.7
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
.+++.|+|++|.+++ ++...+..+++|++|+|++|.++ .+| ..+..+++|++|+|++|++++..+..+..
T Consensus 88 ~~L~~L~Ls~N~l~~----l~~~~~~~l~~L~~L~Ls~N~l~-~lp-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 157 (229)
T 3e6j_A 88 TQLTVLDLGTNQLTV----LPSAVFDRLVHLKELFMCCNKLT-ELP-----RGIERLTHLTHLALDQNQLKSIPHGAFDR 157 (229)
T ss_dssp TTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCC-SCC-----TTGGGCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CCcCEEECCCCcCCc----cChhHhCcchhhCeEeccCCccc-ccC-----cccccCCCCCEEECCCCcCCccCHHHHhC
Confidence 457777777777742 23344678999999999999999 788 78999999999999999999766677999
Q ss_pred CCCCCEEEcccccccccCC
Q 036330 163 IISLTNLSLGYCGIEGFIP 181 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G~iP 181 (187)
+++|+.|++++|.+++..+
T Consensus 158 l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 158 LSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CTTCCEEECTTSCBCTTBG
T ss_pred CCCCCEEEeeCCCccCCcc
Confidence 9999999999999987654
No 30
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.28 E-value=4.6e-12 Score=91.58 Aligned_cols=87 Identities=24% Similarity=0.289 Sum_probs=75.2
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCC-CChHHhh
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNN-SLLPSLT 161 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~ 161 (187)
.+++.|++++|.+++. ..+..+++|++|++++|.+++.+| ..+..+++|++|++++|++++ ..|..++
T Consensus 42 ~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~n~i~~~~~-----~~~~~l~~L~~L~ls~N~i~~~~~~~~~~ 110 (149)
T 2je0_A 42 EELEFLSTINVGLTSI------ANLPKLNKLKKLELSDNRVSGGLE-----VLAEKCPNLTHLNLSGNKIKDLSTIEPLK 110 (149)
T ss_dssp TTCCEEECTTSCCCCC------TTCCCCTTCCEEECCSSCCCSCTH-----HHHHHCTTCCEEECTTSCCCSHHHHGGGG
T ss_pred CCCcEEECcCCCCCCc------hhhhcCCCCCEEECCCCcccchHH-----HHhhhCCCCCEEECCCCcCCChHHHHHHh
Confidence 5799999999998432 447789999999999999998787 777789999999999999997 3458899
Q ss_pred cCCCCCEEEcccccccccC
Q 036330 162 TIISLTNLSLGYCGIEGFI 180 (187)
Q Consensus 162 ~l~~L~~L~Ls~N~l~G~i 180 (187)
.+++|++|++++|.+++..
T Consensus 111 ~l~~L~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 111 KLENLKSLDLFNCEVTNLN 129 (149)
T ss_dssp GCTTCCEEECTTCGGGGST
T ss_pred hCCCCCEEeCcCCcccchH
Confidence 9999999999999999643
No 31
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.27 E-value=1.9e-11 Score=93.09 Aligned_cols=91 Identities=22% Similarity=0.215 Sum_probs=71.6
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
.+++.|++++|.+++ ++...+..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..+..+..
T Consensus 76 ~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 146 (208)
T 2o6s_A 76 TSLTYLNLSTNQLQS----LPNGVFDKLTQLKELALNTNQLQSLPD-----GVFDKLTQLKDLRLYQNQLKSVPDGVFDR 146 (208)
T ss_dssp TTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCSCCCTTTTTT
T ss_pred CCcCEEECCCCcCCc----cCHhHhcCccCCCEEEcCCCcCcccCH-----hHhccCCcCCEEECCCCccceeCHHHhcc
Confidence 457777777777732 222446778888999999988886544 56889999999999999999766666899
Q ss_pred CCCCCEEEcccccccccCCC
Q 036330 163 IISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G~iP~ 182 (187)
+++|++|++++|.+.+..|.
T Consensus 147 l~~L~~L~l~~N~~~~~~~~ 166 (208)
T 2o6s_A 147 LTSLQYIWLHDNPWDCTCPG 166 (208)
T ss_dssp CTTCCEEECCSCCBCCCTTT
T ss_pred CCCccEEEecCCCeecCCCC
Confidence 99999999999988777663
No 32
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.27 E-value=2e-11 Score=90.68 Aligned_cols=85 Identities=20% Similarity=0.162 Sum_probs=71.3
Q ss_pred EEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCC
Q 036330 85 VKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTII 164 (187)
Q Consensus 85 v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~ 164 (187)
.+.+++++++++.++ .. + .++|++|+|++|.+++..| ..+..+++|++|+|++|++++..|..|..++
T Consensus 11 ~~~l~~s~n~l~~ip----~~-~--~~~l~~L~L~~N~i~~~~~-----~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~ 78 (170)
T 3g39_A 11 GTTVDCSGKSLASVP----TG-I--PTTTQVLYLYDNQITKLEP-----GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT 78 (170)
T ss_dssp TTEEECTTSCCSSCC----SC-C--CTTCSEEECCSSCCCCCCT-----TTTTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred CCEEEeCCCCcCccC----cc-C--CCCCcEEEcCCCcCCccCh-----hhhcCcccCCEEECCCCCcCccChhhccCCC
Confidence 357999999994322 22 2 3789999999999998777 7899999999999999999976666789999
Q ss_pred CCCEEEcccccccccCCC
Q 036330 165 SLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 165 ~L~~L~Ls~N~l~G~iP~ 182 (187)
+|++|+|++|+|++ +|.
T Consensus 79 ~L~~L~L~~N~l~~-~~~ 95 (170)
T 3g39_A 79 QLTQLSLNDNQLKS-IPR 95 (170)
T ss_dssp TCCEEECCSSCCCC-CCT
T ss_pred CCCEEECCCCccCE-eCH
Confidence 99999999999995 554
No 33
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.25 E-value=1.7e-11 Score=100.14 Aligned_cols=85 Identities=14% Similarity=0.134 Sum_probs=73.4
Q ss_pred EEEcCCC-CCCCCCCCCCCccCcCCCCCcEEEccC-CccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCC
Q 036330 87 ELSLDGI-TLGANSGFLNLSMFLPFQELESLDLSY-NSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTII 164 (187)
Q Consensus 87 ~L~L~~~-~l~~~~~~~~~~~l~~l~~L~~L~Ls~-N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~ 164 (187)
.++++++ +++. ++ . +..+++|+.|+|++ |.|++..| ..|..+++|++|+|++|+|++..|..|++|+
T Consensus 12 ~v~~~~~n~l~~----ip-~-l~~~~~L~~L~l~~~n~l~~~~~-----~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~ 80 (347)
T 2ifg_A 12 GLRCTRDGALDS----LH-H-LPGAENLTELYIENQQHLQHLEL-----RDLRGLGELRNLTIVKSGLRFVAPDAFHFTP 80 (347)
T ss_dssp CEECCSSCCCTT----TT-T-SCSCSCCSEEECCSCSSCCEECG-----GGSCSCCCCSEEECCSSCCCEECTTGGGSCS
T ss_pred EEEcCCCCCCCc----cC-C-CCCCCCeeEEEccCCCCCCCcCh-----hHhccccCCCEEECCCCccceeCHHHhcCCc
Confidence 4688988 7842 33 3 77889999999996 99997766 7899999999999999999998888999999
Q ss_pred CCCEEEcccccccccCCCC
Q 036330 165 SLTNLSLGYCGIEGFIPNQ 183 (187)
Q Consensus 165 ~L~~L~Ls~N~l~G~iP~~ 183 (187)
+|+.|+|++|+|+ .+|..
T Consensus 81 ~L~~L~l~~N~l~-~~~~~ 98 (347)
T 2ifg_A 81 RLSRLNLSFNALE-SLSWK 98 (347)
T ss_dssp CCCEEECCSSCCS-CCCST
T ss_pred CCCEEeCCCCccc-eeCHH
Confidence 9999999999999 56654
No 34
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=2e-11 Score=92.52 Aligned_cols=87 Identities=21% Similarity=0.302 Sum_probs=75.4
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
.+++.|+|++|.++. +....|..+++|++|+|++|.+++..| ..+..+++|++|+|++|++++..+..+..
T Consensus 54 ~~L~~L~Ls~N~i~~----i~~~~f~~l~~L~~L~Ls~N~l~~i~~-----~~f~~l~~L~~L~L~~N~l~~~~~~~~~~ 124 (193)
T 2wfh_A 54 KHLTLIDLSNNRIST----LSNQSFSNMTQLLTLILSYNRLRCIPP-----RTFDGLKSLRLLSLHGNDISVVPEGAFND 124 (193)
T ss_dssp TTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCBCCT-----TTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred cCCCEEECCCCcCCE----eCHhHccCCCCCCEEECCCCccCEeCH-----HHhCCCCCCCEEECCCCCCCeeChhhhhc
Confidence 578999999999953 333558889999999999999997766 78999999999999999999655557899
Q ss_pred CCCCCEEEcccccccc
Q 036330 163 IISLTNLSLGYCGIEG 178 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G 178 (187)
+++|+.|++++|.+..
T Consensus 125 l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 125 LSALSHLAIGANPLYC 140 (193)
T ss_dssp CTTCCEEECCSSCEEC
T ss_pred CccccEEEeCCCCeec
Confidence 9999999999999874
No 35
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.25 E-value=2.8e-11 Score=94.84 Aligned_cols=88 Identities=23% Similarity=0.267 Sum_probs=57.4
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
.+++.|+|++|.++. ++...+..+++|++|+|++|.+++..+ ..+..+++|++|+|++|++++..|..++.
T Consensus 83 ~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 153 (251)
T 3m19_A 83 TELGTLGLANNQLAS----LPLGVFDHLTQLDKLYLGGNQLKSLPS-----GVFDRLTKLKELRLNTNQLQSIPAGAFDK 153 (251)
T ss_dssp TTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CcCCEEECCCCcccc----cChhHhcccCCCCEEEcCCCcCCCcCh-----hHhccCCcccEEECcCCcCCccCHHHcCc
Confidence 346666666666632 222345667778888888887775443 44567777777777777777555556777
Q ss_pred CCCCCEEEccccccccc
Q 036330 163 IISLTNLSLGYCGIEGF 179 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G~ 179 (187)
+++|++|+|++|++++.
T Consensus 154 l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 154 LTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp CTTCCEEECCSSCCSCC
T ss_pred CcCCCEEECCCCcCCcc
Confidence 77777777777777743
No 36
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.24 E-value=2.6e-11 Score=96.18 Aligned_cols=95 Identities=22% Similarity=0.178 Sum_probs=46.2
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCC------------------cc-ccccCCCCCCC
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKE------------------GM-YLSIGSLKWLK 143 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~------------------~~-~~~~~~l~~L~ 143 (187)
..++.|++++|.+++.. ...+..+++|++|++++|.+++..+.. .. +..+..+++|+
T Consensus 109 ~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLP----DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp TTCCEEECTTSCCCCCC----TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCEEECCCCcCCccC----HHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence 35677777777763221 122444555555555555555333200 00 03344555555
Q ss_pred EEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCC
Q 036330 144 ILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIP 181 (187)
Q Consensus 144 ~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP 181 (187)
+|++++|++++..|..++.+++|++|++++|.+.|..|
T Consensus 185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 55555555555444445555555555555555444443
No 37
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.24 E-value=3.4e-11 Score=89.89 Aligned_cols=85 Identities=19% Similarity=0.159 Sum_probs=70.2
Q ss_pred EEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCC
Q 036330 86 KELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIIS 165 (187)
Q Consensus 86 ~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~ 165 (187)
+.+++++++++. ++.. + .++|++|+|++|.+++..| ..+..+++|++|+|++|++++..+..|.++++
T Consensus 15 ~~l~~~~n~l~~----iP~~-~--~~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 82 (174)
T 2r9u_A 15 TLVNCQNIRLAS----VPAG-I--PTDKQRLWLNNNQITKLEP-----GVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ 82 (174)
T ss_dssp SEEECCSSCCSS----CCSC-C--CTTCSEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cEEEeCCCCCCc----cCCC-c--CCCCcEEEeCCCCccccCH-----HHhcCCcCCCEEECCCCCCCccChhHhCCcch
Confidence 578999998842 2222 2 2789999999999998777 78999999999999999999755556789999
Q ss_pred CCEEEcccccccccCCCC
Q 036330 166 LTNLSLGYCGIEGFIPNQ 183 (187)
Q Consensus 166 L~~L~Ls~N~l~G~iP~~ 183 (187)
|++|+|++|+|+ .+|..
T Consensus 83 L~~L~L~~N~l~-~l~~~ 99 (174)
T 2r9u_A 83 LTQLDLNDNHLK-SIPRG 99 (174)
T ss_dssp CCEEECCSSCCC-CCCTT
T ss_pred hhEEECCCCccc-eeCHH
Confidence 999999999999 45553
No 38
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.23 E-value=1.1e-11 Score=112.79 Aligned_cols=102 Identities=22% Similarity=0.250 Sum_probs=53.7
Q ss_pred CCCcceeecCCCCCCEEEEEcCCCCCCCCCC---------------------CCCCccCcCCCCCcEEEccCCccccccC
Q 036330 70 CRWEQVKCVNATTRRVKELSLDGITLGANSG---------------------FLNLSMFLPFQELESLDLSYNSFYGVYE 128 (187)
Q Consensus 70 C~w~gv~C~~~~~~~v~~L~L~~~~l~~~~~---------------------~~~~~~l~~l~~L~~L~Ls~N~l~g~ip 128 (187)
|.|..|.+ - ..+++.|+|++|.+++... .+.+..+.++++|++|+|++|.+++..|
T Consensus 14 ~~L~~vP~-l--p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 14 CNLTQVPQ-V--LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CCSSCCCS-S--CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCC-C--CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 34566655 2 3567788888877742111 1112224444555555555555554444
Q ss_pred CCccccccCCCCCCCEEEccCCCCCCCChHH--hhcCCCCCEEEccccccccc
Q 036330 129 KEGMYLSIGSLKWLKILNLYSNNVNNSLLPS--LTTIISLTNLSLGYCGIEGF 179 (187)
Q Consensus 129 ~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~--l~~l~~L~~L~Ls~N~l~G~ 179 (187)
..+.++++|++|+|++|++++.+|.. ++++++|++|+|++|.+++.
T Consensus 91 -----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~ 138 (844)
T 3j0a_A 91 -----DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138 (844)
T ss_dssp -----TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC
T ss_pred -----hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc
Confidence 45555555555555555555544443 55555555555555555543
No 39
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=3.4e-11 Score=86.93 Aligned_cols=86 Identities=30% Similarity=0.296 Sum_probs=74.0
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
.+++.|+++++.++ .+.++ ..+..+++|++|++++|.+++. + .++.+++|++|++++|++++.+|..++.
T Consensus 17 ~~l~~L~l~~n~l~--~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 17 SDVKELVLDNSRSN--EGKLE-GLTDEFEELEFLSTINVGLTSI-A------NLPKLNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp GGCSEEECTTCBCB--TTBCC-SCCTTCTTCCEEECTTSCCCCC-T------TCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred ccCeEEEccCCcCC--hhHHH-HHHhhcCCCcEEECcCCCCCCc-h------hhhcCCCCCEEECCCCcccchHHHHhhh
Confidence 46899999999983 02232 3467899999999999999865 4 6889999999999999999889999999
Q ss_pred CCCCCEEEcccccccc
Q 036330 163 IISLTNLSLGYCGIEG 178 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G 178 (187)
+++|++|++++|++++
T Consensus 87 l~~L~~L~ls~N~i~~ 102 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKD 102 (149)
T ss_dssp CTTCCEEECTTSCCCS
T ss_pred CCCCCEEECCCCcCCC
Confidence 9999999999999986
No 40
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.22 E-value=2.3e-11 Score=100.45 Aligned_cols=107 Identities=23% Similarity=0.297 Sum_probs=56.9
Q ss_pred CCCcceeecCC--------CCCCEEEEEcCCCCCCCCCCC---------------------CCCccCcCCCCCcEEEccC
Q 036330 70 CRWEQVKCVNA--------TTRRVKELSLDGITLGANSGF---------------------LNLSMFLPFQELESLDLSY 120 (187)
Q Consensus 70 C~w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~---------------------~~~~~l~~l~~L~~L~Ls~ 120 (187)
|.+..+.|... ....++.|+|++|.++..... +....|..+++|++|+|++
T Consensus 18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred ECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 56777777541 112466788888877422110 0111233444555555555
Q ss_pred CccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330 121 NSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 121 N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
|.+++..+ ..+..+++|++|+|++|++++..|..|.++++|+.|+|++|+|+ .+|.
T Consensus 98 N~l~~~~~-----~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~ 153 (361)
T 2xot_A 98 NHLHTLDE-----FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPV 153 (361)
T ss_dssp SCCCEECT-----TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCG
T ss_pred CcCCcCCH-----HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCH
Confidence 55543322 34555666666666666666555556666666666666666666 3443
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.22 E-value=2.6e-11 Score=105.72 Aligned_cols=86 Identities=26% Similarity=0.202 Sum_probs=50.6
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
.+++.|+|++|.+++ +....+..+++|++|++++|.+++..| ..|.++++|++|+|++|++++..|..|++
T Consensus 32 ~~l~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~i~~-----~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~ 102 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKI----LKSYSFSNFSELQWLDLSRCEIETIED-----KAWHGLHHLSNLILTGNPIQSFSPGSFSG 102 (606)
T ss_dssp TTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTCCCCEECT-----TTTTTCTTCCEEECTTCCCCCCCTTSSTT
T ss_pred CCcCEEECCCCCcCE----eChhhccCCccCcEEeCCCCcccccCH-----HHhhchhhcCEeECCCCcccccChhhcCC
Confidence 467888888888742 222335566666666666666665444 45555555555555555555554555555
Q ss_pred CCCCCEEEccccccc
Q 036330 163 IISLTNLSLGYCGIE 177 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~ 177 (187)
+++|++|++++|+++
T Consensus 103 l~~L~~L~L~~n~l~ 117 (606)
T 3vq2_A 103 LTSLENLVAVETKLA 117 (606)
T ss_dssp CTTCCEEECTTSCCC
T ss_pred cccCCEEEccCCccc
Confidence 555555555555555
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.21 E-value=2.1e-11 Score=105.94 Aligned_cols=92 Identities=21% Similarity=0.183 Sum_probs=73.1
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI 163 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l 163 (187)
.++.+++++|.+ .....+..+..+++|++|||++|.+++..| ..|.++++|++|+|++|++++..|..+..+
T Consensus 470 ~L~~L~Ls~N~~---~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~-----~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l 541 (635)
T 4g8a_A 470 SLEVLKMAGNSF---QENFLPDIFTELRNLTFLDLSQCQLEQLSP-----TAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 541 (635)
T ss_dssp TCCEEECTTCEE---GGGEECSCCTTCTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECTTSCCCBCCCGGGTTC
T ss_pred hhhhhhhhhccc---ccccCchhhhhccccCEEECCCCccCCcCh-----HHHcCCCCCCEEECCCCcCCCCChhHHhCC
Confidence 455666666653 111223457788999999999999998777 789999999999999999998888889999
Q ss_pred CCCCEEEcccccccccCCCC
Q 036330 164 ISLTNLSLGYCGIEGFIPNQ 183 (187)
Q Consensus 164 ~~L~~L~Ls~N~l~G~iP~~ 183 (187)
++|++|+|++|+|++..|..
T Consensus 542 ~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 542 NSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp TTCCEEECTTSCCCBCCSSC
T ss_pred CCCCEEECCCCcCCCCCHHH
Confidence 99999999999999777654
No 43
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.21 E-value=5.2e-11 Score=94.45 Aligned_cols=88 Identities=24% Similarity=0.273 Sum_probs=61.0
Q ss_pred CCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhh
Q 036330 82 TRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT 161 (187)
Q Consensus 82 ~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~ 161 (187)
..+++.|++++|.+++ ++...+..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..|..++
T Consensus 84 l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 154 (272)
T 3rfs_A 84 LTNLTYLILTGNQLQS----LPNGVFDKLTNLKELVLVENQLQSLPD-----GVFDKLTNLTYLNLAHNQLQSLPKGVFD 154 (272)
T ss_dssp CTTCCEEECTTSCCCC----CCTTTTTTCTTCCEEECTTSCCCCCCT-----TTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CCCCCEEECCCCccCc----cChhHhcCCcCCCEEECCCCcCCccCH-----HHhccCCCCCEEECCCCccCccCHHHhc
Confidence 3579999999999943 333457889999999999999997655 4455666666666666666654444455
Q ss_pred cCCCCCEEEcccccccc
Q 036330 162 TIISLTNLSLGYCGIEG 178 (187)
Q Consensus 162 ~l~~L~~L~Ls~N~l~G 178 (187)
.+++|++|++++|++++
T Consensus 155 ~l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 155 KLTNLTELDLSYNQLQS 171 (272)
T ss_dssp TCTTCCEEECCSSCCCC
T ss_pred cCccCCEEECCCCCcCc
Confidence 56666666666666653
No 44
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=4e-11 Score=105.00 Aligned_cols=88 Identities=23% Similarity=0.169 Sum_probs=77.0
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCC-hHHhh
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSL-LPSLT 161 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~i-P~~l~ 161 (187)
.+++.|+|++|.++ .++ ..+..+++|+.|+|++|.+++ +| .++.+++|++|+|++|++++.. |..++
T Consensus 463 ~~L~~L~Ls~N~l~----~lp-~~~~~l~~L~~L~Ls~N~l~~-lp------~l~~l~~L~~L~Ls~N~l~~~~~p~~l~ 530 (567)
T 1dce_A 463 LLVTHLDLSHNRLR----ALP-PALAALRCLEVLQASDNALEN-VD------GVANLPRLQELLLCNNRLQQSAAIQPLV 530 (567)
T ss_dssp TTCCEEECCSSCCC----CCC-GGGGGCTTCCEEECCSSCCCC-CG------GGTTCSSCCEEECCSSCCCSSSTTGGGG
T ss_pred ccCcEeecCccccc----ccc-hhhhcCCCCCEEECCCCCCCC-Cc------ccCCCCCCcEEECCCCCCCCCCCcHHHh
Confidence 46899999999994 233 358889999999999999997 55 6899999999999999999876 99999
Q ss_pred cCCCCCEEEcccccccccCCC
Q 036330 162 TIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 162 ~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
.+++|+.|+|++|.|+|..|.
T Consensus 531 ~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 531 SCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp GCTTCCEEECTTSGGGGSSSC
T ss_pred cCCCCCEEEecCCcCCCCccH
Confidence 999999999999999977653
No 45
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.19 E-value=5.3e-11 Score=100.84 Aligned_cols=101 Identities=23% Similarity=0.269 Sum_probs=79.0
Q ss_pred CcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCC
Q 036330 72 WEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLK 143 (187)
Q Consensus 72 w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~ 143 (187)
|..+.|... ....++.|+|++|++++ +.+..|..+++|++|+|++|.+++..| ..+.++++|+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~-----~~~~~l~~L~ 126 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQM----IQADTFRHLHHLEVLQLGRNSIRQIEV-----GAFNGLASLN 126 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECT-----TTTTTCTTCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCce----ECHHHcCCCCCCCEEECCCCccCCcCh-----hhccCcccCC
Confidence 566777541 12468999999999842 333557889999999999999987766 7788899999
Q ss_pred EEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330 144 ILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 144 ~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
+|+|++|++++..+..+..+++|++|+|++|+++ .+|.
T Consensus 127 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~ 164 (452)
T 3zyi_A 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPS 164 (452)
T ss_dssp EEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECT
T ss_pred EEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCH
Confidence 9999999998666666888899999999999888 4554
No 46
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.18 E-value=3.9e-11 Score=88.31 Aligned_cols=86 Identities=27% Similarity=0.337 Sum_probs=62.0
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCC-ChHHhh
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNS-LLPSLT 161 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~-iP~~l~ 161 (187)
.+++.|++++|.+++. ..+..+++|++|++++|.+++.+| ..+..+++|++|++++|++++. .+..+.
T Consensus 49 ~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~ 117 (168)
T 2ell_A 49 VNLEFLSLINVGLISV------SNLPKLPKLKKLELSENRIFGGLD-----MLAEKLPNLTHLNLSGNKLKDISTLEPLK 117 (168)
T ss_dssp GGCCEEEEESSCCCCC------SSCCCCSSCCEEEEESCCCCSCCC-----HHHHHCTTCCEEECBSSSCCSSGGGGGGS
T ss_pred CCCCEEeCcCCCCCCh------hhhccCCCCCEEECcCCcCchHHH-----HHHhhCCCCCEEeccCCccCcchhHHHHh
Confidence 4578888888887422 346677888888888888887666 5566677888888888887752 226677
Q ss_pred cCCCCCEEEccccccccc
Q 036330 162 TIISLTNLSLGYCGIEGF 179 (187)
Q Consensus 162 ~l~~L~~L~Ls~N~l~G~ 179 (187)
.+++|++|++++|.+++.
T Consensus 118 ~l~~L~~L~l~~N~l~~~ 135 (168)
T 2ell_A 118 KLECLKSLDLFNCEVTNL 135 (168)
T ss_dssp SCSCCCEEECCSSGGGTS
T ss_pred cCCCCCEEEeeCCcCcch
Confidence 778888888888877743
No 47
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.18 E-value=5e-11 Score=90.20 Aligned_cols=65 Identities=20% Similarity=0.300 Sum_probs=32.4
Q ss_pred CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
+..+++|++|++++|.+++..| ..+..+++|++|++++|++.+.+| .+..+++|++|++++|+++
T Consensus 108 l~~l~~L~~L~Ls~n~i~~~~~-----~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 108 LSGLTSLTLLDISHSAHDDSIL-----TKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp CTTCTTCCEEECCSSBCBGGGH-----HHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC
T ss_pred hcCCCCCCEEEecCCccCcHhH-----HHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc
Confidence 3444555555555555554444 445555555555555555222344 3555555555555555554
No 48
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.18 E-value=8e-11 Score=100.03 Aligned_cols=101 Identities=26% Similarity=0.253 Sum_probs=61.5
Q ss_pred CcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCC
Q 036330 72 WEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLK 143 (187)
Q Consensus 72 w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~ 143 (187)
|..|.|... ....++.|+|++|.+++ +....|..+++|++|+|++|.+++..| ..+.++++|+
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~i~~~~~-----~~~~~l~~L~ 83 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKT----LNQDEFASFPHLEELELNENIVSAVEP-----GAFNNLFNLR 83 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCE----ECTTTTTTCTTCCEEECTTSCCCEECT-----TTTTTCTTCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccce----ECHhHccCCCCCCEEECCCCccCEeCh-----hhhhCCccCC
Confidence 567777531 12357888888888842 222446667777777777777776555 5566666666
Q ss_pred EEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCC
Q 036330 144 ILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIP 181 (187)
Q Consensus 144 ~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP 181 (187)
+|+|++|++++..+..|.++++|++|+|++|++++.+|
T Consensus 84 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 121 (477)
T 2id5_A 84 TLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLD 121 (477)
T ss_dssp EEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECT
T ss_pred EEECCCCcCCccCcccccCCCCCCEEECCCCccccCCh
Confidence 66666666654333345556666666666666654443
No 49
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.17 E-value=3.3e-11 Score=99.47 Aligned_cols=88 Identities=24% Similarity=0.240 Sum_probs=70.7
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHh--
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSL-- 160 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l-- 160 (187)
.+++.|+|++|.++ .++...|..+++|++|+|++|.+++..| ..+..+++|++|+|++|++++ +|..+
T Consensus 88 ~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~L~~N~i~~~~~-----~~~~~l~~L~~L~L~~N~l~~-l~~~~~~ 157 (361)
T 2xot_A 88 PNLRYLDLSSNHLH----TLDEFLFSDLQALEVLLLYNNHIVVVDR-----NAFEDMAQLQKLYLSQNQISR-FPVELIK 157 (361)
T ss_dssp TTCCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCSSCCCS-CCGGGTC
T ss_pred CCCCEEECCCCcCC----cCCHHHhCCCcCCCEEECCCCcccEECH-----HHhCCcccCCEEECCCCcCCe-eCHHHhc
Confidence 35677777777763 2233457789999999999999997777 789999999999999999995 66554
Q ss_pred --hcCCCCCEEEcccccccccCC
Q 036330 161 --TTIISLTNLSLGYCGIEGFIP 181 (187)
Q Consensus 161 --~~l~~L~~L~Ls~N~l~G~iP 181 (187)
..+++|+.|+|++|+|+ .+|
T Consensus 158 ~~~~l~~L~~L~L~~N~l~-~l~ 179 (361)
T 2xot_A 158 DGNKLPKLMLLDLSSNKLK-KLP 179 (361)
T ss_dssp ----CTTCCEEECCSSCCC-CCC
T ss_pred CcccCCcCCEEECCCCCCC-ccC
Confidence 67999999999999999 555
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.17 E-value=5.5e-11 Score=104.24 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=50.7
Q ss_pred EEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCC
Q 036330 85 VKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTII 164 (187)
Q Consensus 85 v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~ 164 (187)
++.|+|+++.+++ +++..+..+++|++|+|++|.+++..| ..++.+++|++|+|++|++++..|..|++++
T Consensus 77 L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~ 147 (597)
T 3oja_B 77 VELLNLNDLQIEE----IDTYAFAYAHTIQKLYMGFNAIRYLPP-----HVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 147 (597)
T ss_dssp CSEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CcEEECCCCCCCC----CChHHhcCCCCCCEEECCCCcCCCCCH-----HHHcCCCCCCEEEeeCCCCCCCCHHHhccCC
Confidence 4455555555521 122235566677777777777766544 4556666666666666666643333346666
Q ss_pred CCCEEEcccccccccCC
Q 036330 165 SLTNLSLGYCGIEGFIP 181 (187)
Q Consensus 165 ~L~~L~Ls~N~l~G~iP 181 (187)
+|++|+|++|.+++..|
T Consensus 148 ~L~~L~Ls~N~l~~~~~ 164 (597)
T 3oja_B 148 KLTTLSMSNNNLERIED 164 (597)
T ss_dssp TCCEEECCSSCCCBCCT
T ss_pred CCCEEEeeCCcCCCCCh
Confidence 66666666666665444
No 51
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.17 E-value=1.1e-10 Score=93.70 Aligned_cols=72 Identities=22% Similarity=0.149 Sum_probs=44.8
Q ss_pred cCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCCC
Q 036330 106 MFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQ 183 (187)
Q Consensus 106 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~ 183 (187)
.+..+++|++|+|++|.+++..+ ..+..+++|++|+|++|++++..+..+..+++|+.|+|++|+++ .||..
T Consensus 119 ~~~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~ 190 (290)
T 1p9a_G 119 ALRGLGELQELYLKGNELKTLPP-----GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG 190 (290)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCT-----TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred HHcCCCCCCEEECCCCCCCccCh-----hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChh
Confidence 35556666666666666664333 44566677777777777776433334566777777777777776 56653
No 52
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.17 E-value=4.2e-11 Score=104.90 Aligned_cols=86 Identities=21% Similarity=0.234 Sum_probs=76.3
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI 163 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l 163 (187)
.++.|+|++|.+++ ++ . +..+++|+.|+|++|.++ .+| ..++.+++|++|+|++|++++ +| .++++
T Consensus 442 ~L~~L~Ls~n~l~~----lp-~-~~~l~~L~~L~Ls~N~l~-~lp-----~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l 507 (567)
T 1dce_A 442 DVRVLHLAHKDLTV----LC-H-LEQLLLVTHLDLSHNRLR-ALP-----PALAALRCLEVLQASDNALEN-VD-GVANL 507 (567)
T ss_dssp TCSEEECTTSCCSS----CC-C-GGGGTTCCEEECCSSCCC-CCC-----GGGGGCTTCCEEECCSSCCCC-CG-GGTTC
T ss_pred CceEEEecCCCCCC----Cc-C-ccccccCcEeecCccccc-ccc-----hhhhcCCCCCEEECCCCCCCC-Cc-ccCCC
Confidence 47789999999943 22 2 788999999999999999 888 899999999999999999997 88 89999
Q ss_pred CCCCEEEcccccccccC-CCC
Q 036330 164 ISLTNLSLGYCGIEGFI-PNQ 183 (187)
Q Consensus 164 ~~L~~L~Ls~N~l~G~i-P~~ 183 (187)
++|+.|+|++|+|++.+ |..
T Consensus 508 ~~L~~L~Ls~N~l~~~~~p~~ 528 (567)
T 1dce_A 508 PRLQELLLCNNRLQQSAAIQP 528 (567)
T ss_dssp SSCCEEECCSSCCCSSSTTGG
T ss_pred CCCcEEECCCCCCCCCCCcHH
Confidence 99999999999999776 653
No 53
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.17 E-value=5.4e-11 Score=87.54 Aligned_cols=86 Identities=27% Similarity=0.287 Sum_probs=74.0
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
.+++.|+++++.++ .+.++ ..+..+++|++|++++|.+++. + .+..+++|++|++++|++++.+|..+..
T Consensus 24 ~~L~~L~l~~n~l~--~~~i~-~~~~~l~~L~~L~l~~n~l~~~-~------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 24 AAVRELVLDNCKSN--DGKIE-GLTAEFVNLEFLSLINVGLISV-S------NLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp TSCSEEECCSCBCB--TTBCS-SCCGGGGGCCEEEEESSCCCCC-S------SCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred ccCCEEECCCCCCC--hhhHH-HHHHhCCCCCEEeCcCCCCCCh-h------hhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 56999999999983 12232 3367889999999999999865 4 6889999999999999999889999999
Q ss_pred CCCCCEEEcccccccc
Q 036330 163 IISLTNLSLGYCGIEG 178 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G 178 (187)
+++|++|++++|++++
T Consensus 94 l~~L~~L~Ls~N~l~~ 109 (168)
T 2ell_A 94 LPNLTHLNLSGNKLKD 109 (168)
T ss_dssp CTTCCEEECBSSSCCS
T ss_pred CCCCCEEeccCCccCc
Confidence 9999999999999985
No 54
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.17 E-value=5.6e-11 Score=100.13 Aligned_cols=71 Identities=28% Similarity=0.268 Sum_probs=43.2
Q ss_pred CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
+..+++|++|++++|.+++..| ..+..+++|++|++++|++++..+..+..+++|++|++++|.+++.+|.
T Consensus 343 ~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHIRALGD-----QSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp GTTCTTCCEEECCSSCCCEECT-----TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hcCcccCCEEECCCCcccccCh-----hhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 4445555555555555555444 5566666666666666666654444456666666666666666666663
No 55
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.16 E-value=1.1e-11 Score=111.36 Aligned_cols=87 Identities=21% Similarity=0.209 Sum_probs=43.2
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
..++.|+|++|.+..+ +.. +..+++|++|+|++|.|+ .+| ..++.+++|++|+|++|+|+ .+|..+++
T Consensus 224 ~~L~~L~Ls~n~l~~l----~~~-~~~l~~L~~L~Ls~N~l~-~lp-----~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNI----SAN-IFKYDFLTRLYLNGNSLT-ELP-----AEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp CCCCEEECTTSCCSCC----CGG-GGGCCSCSCCBCTTSCCS-CCC-----GGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred CCCcEEECCCCCCCCC----Chh-hcCCCCCCEEEeeCCcCc-ccC-----hhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 4577788888877321 111 224445555555555554 444 44444444444444444444 44444444
Q ss_pred CCCCCEEEcccccccccCCC
Q 036330 163 IISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G~iP~ 182 (187)
|++|++|+|++|.|+ .||.
T Consensus 292 l~~L~~L~L~~N~l~-~lp~ 310 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPW 310 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCS
T ss_pred CCCCCEEECCCCCCC-ccCh
Confidence 444444444444443 4443
No 56
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.16 E-value=1.2e-10 Score=92.25 Aligned_cols=67 Identities=16% Similarity=0.131 Sum_probs=40.4
Q ss_pred CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccc
Q 036330 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEG 178 (187)
Q Consensus 107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G 178 (187)
+..+++|++|++++|.+++..| ..+..+++|++|++++|++++..+..++.+++|++|++++|++++
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 138 (276)
T 2z62_A 72 YQSLSHLSTLILTGNPIQSLAL-----GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138 (276)
T ss_dssp TTTCTTCCEEECTTCCCCEECT-----TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred ccCCcCCCEEECCCCccCccCh-----hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence 4445555555555555554444 456666666666666666665444456666666666666666664
No 57
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.15 E-value=1.5e-10 Score=92.94 Aligned_cols=90 Identities=23% Similarity=0.197 Sum_probs=67.7
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
.+++.|++++|.++. ++ ..+..+++|++|++++|.+++..| ..+..+++|++|+|++|++++..|..+..
T Consensus 77 ~~L~~L~Ls~N~l~~----l~-~~~~~l~~L~~L~l~~N~l~~l~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 146 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQS----LP-LLGQTLPALTVLDVSFNRLTSLPL-----GALRGLGELQELYLKGNELKTLPPGLLTP 146 (290)
T ss_dssp TTCCEEECCSSCCSS----CC-CCTTTCTTCCEEECCSSCCCCCCS-----STTTTCTTCCEEECTTSCCCCCCTTTTTT
T ss_pred CcCCEEECCCCcCCc----Cc-hhhccCCCCCEEECCCCcCcccCH-----HHHcCCCCCCEEECCCCCCCccChhhccc
Confidence 345666666666621 21 235677888888888888886555 67888999999999999998766666788
Q ss_pred CCCCCEEEcccccccccCCCC
Q 036330 163 IISLTNLSLGYCGIEGFIPNQ 183 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G~iP~~ 183 (187)
+++|+.|+|++|+++ .+|..
T Consensus 147 l~~L~~L~L~~N~l~-~l~~~ 166 (290)
T 1p9a_G 147 TPKLEKLSLANNNLT-ELPAG 166 (290)
T ss_dssp CTTCCEEECTTSCCS-CCCTT
T ss_pred ccCCCEEECCCCcCC-ccCHH
Confidence 899999999999998 56653
No 58
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.14 E-value=2e-10 Score=90.90 Aligned_cols=66 Identities=24% Similarity=0.334 Sum_probs=40.3
Q ss_pred CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
+..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..|..+..+++|++|++++|+++
T Consensus 129 ~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNELQSLPK-----GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp TTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred hCcCcCCCEEECCCCcCCccCH-----hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence 4455555566666655553322 34566667777777777766544455666677777777777766
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.14 E-value=1.9e-10 Score=91.51 Aligned_cols=67 Identities=24% Similarity=0.212 Sum_probs=43.1
Q ss_pred CcCCCCCcEEEccCCc-cccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccc
Q 036330 107 FLPFQELESLDLSYNS-FYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEG 178 (187)
Q Consensus 107 l~~l~~L~~L~Ls~N~-l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G 178 (187)
+..+++|++|++++|. +....| ..+..+++|++|++++|++++..|..+.++++|++|++++|++++
T Consensus 76 ~~~l~~L~~L~l~~n~~l~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 143 (285)
T 1ozn_A 76 FTGLALLEQLDLSDNAQLRSVDP-----ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143 (285)
T ss_dssp TTTCTTCCEEECCSCTTCCCCCT-----TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred cCCccCCCEEeCCCCCCccccCH-----HHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc
Confidence 4455566666666665 443323 556667777777777777776666667777777777777777763
No 60
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.13 E-value=8.4e-11 Score=87.40 Aligned_cols=86 Identities=17% Similarity=0.098 Sum_probs=71.1
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChH--Hhh
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLP--SLT 161 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~--~l~ 161 (187)
+++.|++++|.+++. ..+..+++|++|++++|.+++ +|+ ..+..+++|++|++++|+++ .+|. .+.
T Consensus 43 ~L~~L~Ls~N~l~~~------~~l~~l~~L~~L~Ls~N~l~~-~~~----~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~ 110 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL------DGFPLLRRLKTLLVNNNRICR-IGE----GLDQALPDLTELILTNNSLV-ELGDLDPLA 110 (176)
T ss_dssp CCSEEECCSSCCCEE------CCCCCCSSCCEEECCSSCCCE-ECS----CHHHHCTTCCEEECCSCCCC-CGGGGGGGG
T ss_pred CCCEEECCCCCCCcc------cccccCCCCCEEECCCCcccc-cCc----chhhcCCCCCEEECCCCcCC-cchhhHhhh
Confidence 689999999998422 347788999999999999985 451 33488999999999999996 6787 789
Q ss_pred cCCCCCEEEcccccccccCCC
Q 036330 162 TIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 162 ~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
.+++|++|++++|.++ .+|.
T Consensus 111 ~l~~L~~L~l~~N~i~-~~~~ 130 (176)
T 1a9n_A 111 SLKSLTYLCILRNPVT-NKKH 130 (176)
T ss_dssp GCTTCCEEECCSSGGG-GSTT
T ss_pred cCCCCCEEEecCCCCC-CcHh
Confidence 9999999999999998 5664
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.13 E-value=1e-10 Score=93.79 Aligned_cols=71 Identities=24% Similarity=0.177 Sum_probs=49.6
Q ss_pred CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
+..+++|++|++++|.+++..| ..+..+++|++|++++|++++..+..+..+++|++|++++|++++.+|.
T Consensus 171 ~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 171 FTELRNLTFLDLSQCQLEQLSP-----TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp CTTCTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred HhhCcCCCEEECCCCCcCCcCH-----HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence 5556666666666666665555 5677777777777777777765555677777777777777777776654
No 62
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.12 E-value=2.3e-10 Score=99.81 Aligned_cols=90 Identities=23% Similarity=0.314 Sum_probs=61.1
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCC-CChHHhhc
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNN-SLLPSLTT 162 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~~ 162 (187)
+++.|+|++|.+++ ..+..+..+++|++|++++|.+++..| ..++.+++|++|++++|++++ .+|..+++
T Consensus 81 ~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~ 151 (606)
T 3vq2_A 81 HLSNLILTGNPIQS----FSPGSFSGLTSLENLVAVETKLASLES-----FPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151 (606)
T ss_dssp TCCEEECTTCCCCC----CCTTSSTTCTTCCEEECTTSCCCCSSS-----SCCTTCTTCCEEECCSSCCCCCCCCGGGGT
T ss_pred hcCEeECCCCcccc----cChhhcCCcccCCEEEccCCccccccc-----cccCCCCCCCEEeCCCCcccceechHhHhh
Confidence 45555555555521 112335566666666666666665444 567888888888888888875 67888888
Q ss_pred CCCCCEEEcccccccccCCC
Q 036330 163 IISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G~iP~ 182 (187)
+++|++|++++|++++..|.
T Consensus 152 l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 152 LTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CTTCCEEECCSSCCCEECTT
T ss_pred cCCCCEEEccCCcceecChh
Confidence 88888888888888865554
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.12 E-value=1.9e-10 Score=97.10 Aligned_cols=101 Identities=24% Similarity=0.315 Sum_probs=74.1
Q ss_pred CcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCC
Q 036330 72 WEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLK 143 (187)
Q Consensus 72 w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~ 143 (187)
|..|.|... ....++.|+|++|.++. +....|..+++|++|+|++|.+++..+ ..+.++++|+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~i~~-----~~~~~l~~L~ 115 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGISTNTRLLNLHENQIQI----IKVNSFKHLRHLEILQLSRNHIRTIEI-----GAFNGLANLN 115 (440)
T ss_dssp SCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCE----ECTTTTSSCSSCCEEECCSSCCCEECG-----GGGTTCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCe----eCHHHhhCCCCCCEEECCCCcCCccCh-----hhccCCccCC
Confidence 556777541 12357889999999842 223457788888999999888886655 6788888888
Q ss_pred EEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330 144 ILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 144 ~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
+|+|++|++++..+..+..+++|++|+|++|+++ .+|.
T Consensus 116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~ 153 (440)
T 3zyj_A 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPS 153 (440)
T ss_dssp EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECT
T ss_pred EEECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCH
Confidence 8888888888655556788888888888888887 3443
No 64
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.12 E-value=4.7e-11 Score=99.06 Aligned_cols=70 Identities=20% Similarity=0.238 Sum_probs=47.7
Q ss_pred cCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHH-hhcCCCCCEEEcccccccccCC
Q 036330 106 MFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPS-LTTIISLTNLSLGYCGIEGFIP 181 (187)
Q Consensus 106 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~-l~~l~~L~~L~Ls~N~l~G~iP 181 (187)
.+..+++|++|++++|.+++..| ..++.+++|++|++++|+++ .+|.. ++++++|++|++++|.+++..|
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~ 158 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPP-----HVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIED 158 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred hccCCCCcCEEECCCCCCCcCCH-----HHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccCh
Confidence 35566777777777777765555 55677777777777777777 34443 5777777777777777775444
No 65
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.11 E-value=2.1e-10 Score=91.24 Aligned_cols=42 Identities=21% Similarity=0.114 Sum_probs=20.6
Q ss_pred cCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330 136 IGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 136 ~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
+..+++|++|++++|++++..|..+.++++|+.|++++|+++
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 214 (285)
T 1ozn_A 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred hcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCC
Confidence 444444445555555444444444444555555555555444
No 66
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.11 E-value=1.2e-10 Score=101.63 Aligned_cols=87 Identities=22% Similarity=0.163 Sum_probs=52.6
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
..++.|+|++|.+++ +.+..+..+++|++|++++|.+.+..| ..|.++++|++|+|++|++++..|..+++
T Consensus 33 ~~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 33 NSTECLEFSFNVLPT----IQNTTFSRLINLTFLDLTRCQIYWIHE-----DTFQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp TTCCEEECTTCCCSE----ECTTTSTTCTTCSEEECTTCCCCEECT-----TTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred CcCcEEEccCCccCc----CChhHhccCccceEEECCCCccceeCh-----hhccCccccCeeeCCCCcccccChhhhcc
Confidence 467888888888742 222346666777777777777666555 45555555555555555555555555555
Q ss_pred CCCCCEEEcccccccc
Q 036330 163 IISLTNLSLGYCGIEG 178 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G 178 (187)
+++|++|++++|++++
T Consensus 104 l~~L~~L~L~~n~i~~ 119 (606)
T 3t6q_A 104 PKALKHLFFIQTGISS 119 (606)
T ss_dssp CTTCCEEECTTSCCSC
T ss_pred cccccEeeccccCccc
Confidence 5555555555555553
No 67
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.11 E-value=5.8e-11 Score=105.00 Aligned_cols=93 Identities=10% Similarity=0.207 Sum_probs=60.2
Q ss_pred CCEEEEEcCCCCCCCCC--CC------------CCCccCc--CCCCCcEEEccCCccccccCCCccccccCCCCCCCEEE
Q 036330 83 RRVKELSLDGITLGANS--GF------------LNLSMFL--PFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILN 146 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~--~~------------~~~~~l~--~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~ 146 (187)
.+++.|+|++|.+++.. .. ++ ..+. ++++|++|++++|.+.|.+| ..++++++|++|+
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip-~~l~~~~l~~L~~L~L~~n~l~~~~p-----~~l~~l~~L~~L~ 279 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT-EDLKWDNLKDLTDVEVYNCPNLTKLP-----TFLKALPEMQLIN 279 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEECCTTCSSCC-----TTTTTCSSCCEEE
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCc-hhhhhcccCCCCEEEecCCcCCccCh-----HHHhcCCCCCEEE
Confidence 46788888888885310 00 22 3355 77777788888777777777 6677777777777
Q ss_pred ccCCC-CCC-CChHHhhcC------CCCCEEEcccccccccCCC
Q 036330 147 LYSNN-VNN-SLLPSLTTI------ISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 147 Ls~N~-l~G-~iP~~l~~l------~~L~~L~Ls~N~l~G~iP~ 182 (187)
+++|+ ++| .+|..++++ ++|++|++++|+++ .||.
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~ 322 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV 322 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCc
Confidence 77776 776 666665554 55555555555555 5554
No 68
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.11 E-value=7.9e-11 Score=105.86 Aligned_cols=88 Identities=24% Similarity=0.228 Sum_probs=67.3
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
.+++.|+|++|.++ .++ ..+..+++|++|+|++|.|+ .+| ..++.+++|++|+|++|.++ .+|..|++
T Consensus 247 ~~L~~L~Ls~N~l~----~lp-~~~~~l~~L~~L~Ls~N~l~-~lp-----~~~~~l~~L~~L~L~~N~l~-~lp~~~~~ 314 (727)
T 4b8c_D 247 DFLTRLYLNGNSLT----ELP-AEIKNLSNLRVLDLSHNRLT-SLP-----AELGSCFQLKYFYFFDNMVT-TLPWEFGN 314 (727)
T ss_dssp CSCSCCBCTTSCCS----CCC-GGGGGGTTCCEEECTTSCCS-SCC-----SSGGGGTTCSEEECCSSCCC-CCCSSTTS
T ss_pred CCCCEEEeeCCcCc----ccC-hhhhCCCCCCEEeCcCCcCC-ccC-----hhhcCCCCCCEEECCCCCCC-ccChhhhc
Confidence 35777888888773 232 33677888888888888888 677 77888888888888888886 67877888
Q ss_pred CCCCCEEEcccccccccCCC
Q 036330 163 IISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G~iP~ 182 (187)
|++|++|+|++|.|+|.+|.
T Consensus 315 l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 315 LCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp CTTCCCEECTTSCCCSHHHH
T ss_pred CCCccEEeCCCCccCCCChH
Confidence 88888888888888877664
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.10 E-value=2.2e-10 Score=90.70 Aligned_cols=88 Identities=25% Similarity=0.336 Sum_probs=66.3
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCC-CChHHhh
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNN-SLLPSLT 161 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~ 161 (187)
.+++.|++++|.+++ .....+..+++|++|++++|.+++..+ ..+..+++|++|++++|++++ .+|..++
T Consensus 76 ~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~l~~~~~ 146 (276)
T 2z62_A 76 SHLSTLILTGNPIQS----LALGAFSGLSSLQKLVAVETNLASLEN-----FPIGHLKTLKELNVAHNLIQSFKLPEYFS 146 (276)
T ss_dssp TTCCEEECTTCCCCE----ECTTTTTTCTTCCEEECTTSCCCCSTT-----CCCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred cCCCEEECCCCccCc----cChhhhcCCccccEEECCCCCccccCc-----hhcccCCCCCEEECcCCccceecCchhhc
Confidence 356777777777632 222446778888888888888886555 567888888888888888876 4688888
Q ss_pred cCCCCCEEEccccccccc
Q 036330 162 TIISLTNLSLGYCGIEGF 179 (187)
Q Consensus 162 ~l~~L~~L~Ls~N~l~G~ 179 (187)
++++|++|++++|++++.
T Consensus 147 ~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 147 NLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp GCTTCCEEECCSSCCCEE
T ss_pred cCCCCCEEECCCCCCCcC
Confidence 888888888888888754
No 70
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.09 E-value=1.7e-10 Score=93.52 Aligned_cols=88 Identities=24% Similarity=0.276 Sum_probs=67.5
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI 163 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l 163 (187)
+++.|++++|.+++ ..+..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|+++ .+|..+..+
T Consensus 193 ~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 262 (330)
T 1xku_A 193 SLTELHLDGNKITK----VDAASLKGLNNLAKLGLSFNSISAVDN-----GSLANTPHLRELHLNNNKLV-KVPGGLADH 262 (330)
T ss_dssp TCSEEECTTSCCCE----ECTGGGTTCTTCCEEECCSSCCCEECT-----TTGGGSTTCCEEECCSSCCS-SCCTTTTTC
T ss_pred cCCEEECCCCcCCc----cCHHHhcCCCCCCEEECCCCcCceeCh-----hhccCCCCCCEEECCCCcCc-cCChhhccC
Confidence 45566666666521 222346778889999999998887665 67888899999999999998 788888889
Q ss_pred CCCCEEEcccccccccCCC
Q 036330 164 ISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 164 ~~L~~L~Ls~N~l~G~iP~ 182 (187)
++|++|++++|+++ .+|.
T Consensus 263 ~~L~~L~l~~N~i~-~~~~ 280 (330)
T 1xku_A 263 KYIQVVYLHNNNIS-AIGS 280 (330)
T ss_dssp SSCCEEECCSSCCC-CCCT
T ss_pred CCcCEEECCCCcCC-ccCh
Confidence 99999999999998 4554
No 71
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.09 E-value=1.9e-10 Score=86.95 Aligned_cols=88 Identities=18% Similarity=0.277 Sum_probs=75.6
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
.+++.|+++++.++. + +.+..+++|++|++++|.+++..| ..+..+++|++|++++|++++..|..++.
T Consensus 66 ~~L~~L~l~~n~~~~----~--~~l~~l~~L~~L~l~~n~l~~~~~-----~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~ 134 (197)
T 4ezg_A 66 HNIKDLTINNIHATN----Y--NPISGLSNLERLRIMGKDVTSDKI-----PNLSGLTSLTLLDISHSAHDDSILTKINT 134 (197)
T ss_dssp TTCSEEEEESCCCSC----C--GGGTTCTTCCEEEEECTTCBGGGS-----CCCTTCTTCCEEECCSSBCBGGGHHHHTT
T ss_pred CCCCEEEccCCCCCc----c--hhhhcCCCCCEEEeECCccCcccC-----hhhcCCCCCCEEEecCCccCcHhHHHHhh
Confidence 468999999997731 1 247789999999999999998777 78999999999999999999889999999
Q ss_pred CCCCCEEEcccccccccCC
Q 036330 163 IISLTNLSLGYCGIEGFIP 181 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G~iP 181 (187)
+++|++|++++|.+-+.+|
T Consensus 135 l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 135 LPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp CSSCCEEECCSCTBCCCCG
T ss_pred CCCCCEEEccCCCCccccH
Confidence 9999999999998444665
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.08 E-value=3.6e-11 Score=97.20 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=32.8
Q ss_pred CCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCC--ChHHh--hcCCCCCEEEccccccc
Q 036330 111 QELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNS--LLPSL--TTIISLTNLSLGYCGIE 177 (187)
Q Consensus 111 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~--iP~~l--~~l~~L~~L~Ls~N~l~ 177 (187)
++|++|++++|.+++..| ..++.+++|++|++++|++.|. +|..+ +.+++|++|++++|+++
T Consensus 149 ~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSC-----EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214 (312)
T ss_dssp TTCCEEEEESCSCCCCCT-----TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred CCCcEEEeeCCCCccchH-----HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence 445555555555544433 4555555555555555555543 23333 55555556666555555
No 73
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.08 E-value=1e-10 Score=100.71 Aligned_cols=91 Identities=24% Similarity=0.302 Sum_probs=61.3
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCC-CChHHhh
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNN-SLLPSLT 161 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~ 161 (187)
.+++.|++++|.+++ ..+..+..+++|++|++++|.+++..| ..++.+++|++|++++|++++ .+|..++
T Consensus 50 ~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 120 (549)
T 2z81_A 50 ANLQVLILKSSRINT----IEGDAFYSLGSLEHLDLSDNHLSSLSS-----SWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120 (549)
T ss_dssp TTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECTTSCCCSCCH-----HHHTTCTTCCEEECTTCCCSSSCSSCSCT
T ss_pred CcccEEECCCCCcCc----cChhhccccccCCEEECCCCccCccCH-----HHhccCCCCcEEECCCCcccccchhhhhh
Confidence 467888888888732 222446677777888888877776555 456777777777777777765 3555666
Q ss_pred cCCCCCEEEcccccccccCCC
Q 036330 162 TIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 162 ~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
++++|++|++++|.+.+.+|.
T Consensus 121 ~l~~L~~L~L~~n~~~~~~~~ 141 (549)
T 2z81_A 121 NLTNLQTLRIGNVETFSEIRR 141 (549)
T ss_dssp TCTTCCEEEEEESSSCCEECT
T ss_pred ccCCccEEECCCCccccccCH
Confidence 677777777777765556654
No 74
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.08 E-value=2.7e-10 Score=96.45 Aligned_cols=70 Identities=26% Similarity=0.294 Sum_probs=56.0
Q ss_pred CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
+..+++|+.|+|++|.+++..| ..+..+++|++|+|++|++++..|..+..+++|+.|+|++|+++ .+|.
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~ 283 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRP-----GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPH 283 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECG-----GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCT
T ss_pred ccccccccEEECcCCcCcccCc-----ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccCh
Confidence 5566777778888887777666 77888888888888888888877888888888888888888888 4554
No 75
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.07 E-value=1.9e-10 Score=94.39 Aligned_cols=104 Identities=22% Similarity=0.269 Sum_probs=82.4
Q ss_pred CCCcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCC
Q 036330 70 CRWEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKW 141 (187)
Q Consensus 70 C~w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~ 141 (187)
|+|..|.|... ....+++|+|++|+++ .++...|.++++|++|+|++|.+.+.+|. ..|.++++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~----~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~----~~f~~L~~ 80 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR----VIQKGAFSGFGDLEKIEISQNDVLEVIEA----DVFSNLPK 80 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS----EECTTSSTTCTTCCEEEEECCTTCCEECT----TSBCSCTT
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC----CcCHHHHcCCCCCCEEECcCCCCCCccCh----hHhhcchh
Confidence 67889999641 1236899999999994 34445688999999999999999888873 45788888
Q ss_pred CCE-EEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330 142 LKI-LNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 142 L~~-L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
++. ++++.|+++...|..|..+++|++|++++|++++ +|.
T Consensus 81 l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~ 121 (350)
T 4ay9_X 81 LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPD 121 (350)
T ss_dssp CCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCC
T ss_pred hhhhhcccCCcccccCchhhhhcccccccccccccccc-CCc
Confidence 775 6677799987667788999999999999999984 444
No 76
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.07 E-value=3e-10 Score=95.89 Aligned_cols=70 Identities=21% Similarity=0.318 Sum_probs=55.1
Q ss_pred CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
+..+++|+.|+|++|.+++..| ..+..+++|+.|+|++|++++..|..|.++++|+.|+|++|+++ .+|.
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~ 272 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAIRP-----GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPH 272 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEECT-----TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCT
T ss_pred cCCCcccCEEECCCCccCccCh-----hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccCh
Confidence 5566777778888887776666 67888888888888888888777778888888888888888888 4444
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.06 E-value=9.7e-11 Score=90.94 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=65.9
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCc-cccccCCCccccccCCCCCCCEEEccC-CCCCCCChHHh
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNS-FYGVYEKEGMYLSIGSLKWLKILNLYS-NNVNNSLLPSL 160 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~-l~g~ip~~~~~~~~~~l~~L~~L~Ls~-N~l~G~iP~~l 160 (187)
..++.|++++++++. ++...+..+++|++|++++|. +++..+ ..+..+++|++|++++ |++++..|..+
T Consensus 31 ~~l~~L~l~~n~l~~----i~~~~~~~l~~L~~L~l~~n~~l~~i~~-----~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 31 PSTQTLKLIETHLRT----IPSHAFSNLPNISRIYVSIDVTLQQLES-----HSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp TTCCEEEEESCCCSE----ECTTTTTTCTTCCEEEEECCSSCCEECT-----TTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred CcccEEEEeCCcceE----ECHHHccCCCCCcEEeCCCCCCcceeCH-----hHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 368889999988842 223457778888888888886 664333 4677788888888887 88876555667
Q ss_pred hcCCCCCEEEcccccccccCCC
Q 036330 161 TTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 161 ~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
.++++|++|++++|++++ +|.
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~ 122 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD 122 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC
T ss_pred CCCCCCCEEeCCCCCCcc-ccc
Confidence 788888888888888775 664
No 78
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.06 E-value=1.1e-10 Score=100.16 Aligned_cols=84 Identities=26% Similarity=0.264 Sum_probs=57.5
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCC-CChHHhh
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNN-SLLPSLT 161 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~ 161 (187)
.+++.|+|++|.+++ ..+..+..+++|++|||++|.++ .+| .. .+++|++|+|++|++++ .+|..++
T Consensus 45 ~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~-~lp-----~~--~l~~L~~L~L~~N~l~~~~~p~~~~ 112 (520)
T 2z7x_B 45 SKLRILIISHNRIQY----LDISVFKFNQELEYLDLSHNKLV-KIS-----CH--PTVNLKHLDLSFNAFDALPICKEFG 112 (520)
T ss_dssp TTCCEEECCSSCCCE----EEGGGGTTCTTCCEEECCSSCCC-EEE-----CC--CCCCCSEEECCSSCCSSCCCCGGGG
T ss_pred ccccEEecCCCccCC----cChHHhhcccCCCEEecCCCcee-ecC-----cc--ccCCccEEeccCCccccccchhhhc
Confidence 356666666666631 22234666777777777777776 466 33 67777788888887776 5677778
Q ss_pred cCCCCCEEEcccccccc
Q 036330 162 TIISLTNLSLGYCGIEG 178 (187)
Q Consensus 162 ~l~~L~~L~Ls~N~l~G 178 (187)
++++|++|++++|++++
T Consensus 113 ~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 113 NMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp GCTTCCEEEEEESSCCG
T ss_pred cCCcceEEEecCcccch
Confidence 88888888888887765
No 79
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.06 E-value=2.9e-10 Score=92.37 Aligned_cols=98 Identities=20% Similarity=0.318 Sum_probs=65.0
Q ss_pred CCCcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCC
Q 036330 70 CRWEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKW 141 (187)
Q Consensus 70 C~w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~ 141 (187)
|.|+.+.|... ...+++.|+++++.++. +.+..+..+++|++|++++|.+++..| ..+..+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~ 103 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISE----LRKDDFKGLQHLYALVLVNNKISKIHE-----KAFSPLRK 103 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCCEECG-----GGSTTCTT
T ss_pred ccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCc----cCHhHhhCCCCCcEEECCCCccCccCH-----hHhhCcCC
Confidence 68999998641 12368899999999842 223446777888888888888876666 56666666
Q ss_pred CCEEEccCCCCCCCChH----------------------HhhcCCCCCEEEccccccc
Q 036330 142 LKILNLYSNNVNNSLLP----------------------SLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 142 L~~L~Ls~N~l~G~iP~----------------------~l~~l~~L~~L~Ls~N~l~ 177 (187)
|++|++++|+++ .+|. .+.++++|++|++++|.++
T Consensus 104 L~~L~L~~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~ 160 (332)
T 2ft3_A 104 LQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160 (332)
T ss_dssp CCEEECCSSCCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred CCEEECCCCcCC-ccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence 666666666655 3443 3555666666666666654
No 80
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.06 E-value=2.8e-10 Score=98.83 Aligned_cols=83 Identities=24% Similarity=0.300 Sum_probs=49.0
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCC-CChHHhhc
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNN-SLLPSLTT 162 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G-~iP~~l~~ 162 (187)
+++.|+|++|.+++ +.+..+..+++|++||+++|.++ .+| .. .+++|++|++++|++++ .+|..+++
T Consensus 77 ~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~-~lp-----~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~ 144 (562)
T 3a79_B 77 ELRVLRLSHNRIRS----LDFHVFLFNQDLEYLDVSHNRLQ-NIS-----CC--PMASLRHLDLSFNDFDVLPVCKEFGN 144 (562)
T ss_dssp TCCEEECCSCCCCE----ECTTTTTTCTTCCEEECTTSCCC-EEC-----SC--CCTTCSEEECCSSCCSBCCCCGGGGG
T ss_pred CccEEECCCCCCCc----CCHHHhCCCCCCCEEECCCCcCC-ccC-----cc--ccccCCEEECCCCCccccCchHhhcc
Confidence 45555555555521 11233555566666666666665 455 33 56667777777777665 45566777
Q ss_pred CCCCCEEEcccccccc
Q 036330 163 IISLTNLSLGYCGIEG 178 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G 178 (187)
+++|++|++++|++++
T Consensus 145 l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 145 LTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CTTCCEEEEECSBCCT
T ss_pred cCcccEEecCCCcccc
Confidence 7777777777777664
No 81
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.06 E-value=1.8e-10 Score=93.56 Aligned_cols=88 Identities=24% Similarity=0.243 Sum_probs=70.8
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI 163 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l 163 (187)
.++.|++++|.+++ .....+..+++|+.|++++|.+++..| ..+..+++|++|++++|+++ .+|..+..+
T Consensus 194 ~L~~L~l~~n~i~~----~~~~~l~~l~~L~~L~L~~N~l~~~~~-----~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 194 TLNELHLDHNKIQA----IELEDLLRYSKLYRLGLGHNQIRMIEN-----GSLSFLPTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp SCSCCBCCSSCCCC----CCTTSSTTCTTCSCCBCCSSCCCCCCT-----TGGGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred CCCEEECCCCcCCc----cCHHHhcCCCCCCEEECCCCcCCcCCh-----hHhhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence 46666677766632 222447788899999999999987666 67889999999999999998 799999999
Q ss_pred CCCCEEEcccccccccCCC
Q 036330 164 ISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 164 ~~L~~L~Ls~N~l~G~iP~ 182 (187)
++|++|++++|+++ .+|.
T Consensus 264 ~~L~~L~l~~N~l~-~~~~ 281 (332)
T 2ft3_A 264 KLLQVVYLHTNNIT-KVGV 281 (332)
T ss_dssp TTCCEEECCSSCCC-BCCT
T ss_pred ccCCEEECCCCCCC-ccCh
Confidence 99999999999998 4443
No 82
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.06 E-value=3e-10 Score=100.42 Aligned_cols=71 Identities=18% Similarity=0.153 Sum_probs=47.2
Q ss_pred CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
+..+++|++|++++|.+++ +|. ..++++++|++|++++|++++..|..++++++|++|++++|.+++..|.
T Consensus 69 ~~~l~~L~~L~L~~n~l~~-l~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 139 (680)
T 1ziw_A 69 CQKLPMLKVLNLQHNELSQ-LSD----KTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139 (680)
T ss_dssp HHHCTTCCEEECCSSCCCC-CCT----TTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC
T ss_pred HhcccCcCEEECCCCccCc-cCh----hhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch
Confidence 3344555555555555552 230 3577778888888888888766666778888888888888888766554
No 83
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.06 E-value=3e-10 Score=97.38 Aligned_cols=91 Identities=19% Similarity=0.113 Sum_probs=55.3
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCcccc--ccCCCccccccCCCCCCCEEEccCCCCCCCChHH-
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYG--VYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPS- 159 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g--~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~- 159 (187)
..++.|++++|.+++. . +..+..+++|++|++++|.+++ .+| ..+..+++|++|++++|++++.+|..
T Consensus 324 ~~L~~L~Ls~n~l~~~---~-~~~~~~l~~L~~L~L~~N~l~~l~~~~-----~~~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDT---V-FENCGHLTELETLILQMNQLKELSKIA-----EMTTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp CCCCEEECCSSCCCTT---T-TTTCCCCSSCCEEECCSSCCCBHHHHH-----HHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred CcccEEEeECCccChh---h-hhhhccCCCCCEEEccCCccCccccch-----HHHhhCCCCCEEECCCCcCCcccccch
Confidence 4566777777776321 1 1235566667777777776665 444 45666666666666666666656653
Q ss_pred hhcCCCCCEEEcccccccccCCC
Q 036330 160 LTTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 160 l~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
+..+++|++|++++|+++|.+|.
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~ 417 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFR 417 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGG
T ss_pred hccCccCCEEECcCCCCCcchhh
Confidence 55566666666666666655553
No 84
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.05 E-value=3.6e-10 Score=83.96 Aligned_cols=86 Identities=20% Similarity=0.180 Sum_probs=69.8
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCC-CCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhh
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQ-ELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT 161 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~ 161 (187)
..++.|++++|.++.. +.+..+. +|++|++++|.+++. + .+..+++|++|++++|++++..|..++
T Consensus 19 ~~L~~L~l~~n~l~~i------~~~~~~~~~L~~L~Ls~N~l~~~-~------~l~~l~~L~~L~Ls~N~l~~~~~~~~~ 85 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVI------ENLGATLDQFDAIDFSDNEIRKL-D------GFPLLRRLKTLLVNNNRICRIGEGLDQ 85 (176)
T ss_dssp TSCEEEECTTSCCCSC------CCGGGGTTCCSEEECCSSCCCEE-C------CCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred CCceEEEeeCCCCchh------HHhhhcCCCCCEEECCCCCCCcc-c------ccccCCCCCEEECCCCcccccCcchhh
Confidence 4689999999999422 1244444 999999999999964 4 688999999999999999964444569
Q ss_pred cCCCCCEEEcccccccccCCC
Q 036330 162 TIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 162 ~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
.+++|++|++++|+++ .+|.
T Consensus 86 ~l~~L~~L~L~~N~i~-~~~~ 105 (176)
T 1a9n_A 86 ALPDLTELILTNNSLV-ELGD 105 (176)
T ss_dssp HCTTCCEEECCSCCCC-CGGG
T ss_pred cCCCCCEEECCCCcCC-cchh
Confidence 9999999999999996 5664
No 85
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.05 E-value=3.1e-10 Score=91.02 Aligned_cols=68 Identities=21% Similarity=0.232 Sum_probs=54.8
Q ss_pred CcCCCCCcEEEccCCcccc-ccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccccc
Q 036330 107 FLPFQELESLDLSYNSFYG-VYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGF 179 (187)
Q Consensus 107 l~~l~~L~~L~Ls~N~l~g-~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~ 179 (187)
+..+++|++|++++|.+++ .+| ..+..+++|++|++++|++++..|..+..+++|++|++++|++++.
T Consensus 146 ~~~l~~L~~L~l~~n~l~~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 214 (306)
T 2z66_A 146 FNGLSSLEVLKMAGNSFQENFLP-----DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214 (306)
T ss_dssp TTTCTTCCEEECTTCEEGGGEEC-----SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBC
T ss_pred cccCcCCCEEECCCCccccccch-----hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCcc
Confidence 5566777777777777776 455 6788888899999999998887788888888999999999988853
No 86
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.05 E-value=4.1e-10 Score=91.34 Aligned_cols=100 Identities=17% Similarity=0.210 Sum_probs=67.8
Q ss_pred CCCCcceeecCC--------CCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCC
Q 036330 69 CCRWEQVKCVNA--------TTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLK 140 (187)
Q Consensus 69 ~C~w~gv~C~~~--------~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~ 140 (187)
.|.|+.+.|... ....++.|+++++.+++ ++...+..+++|++|++++|.+++..| ..+..++
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~ 100 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE----IKDGDFKNLKNLHTLILINNKISKISP-----GAFAPLV 100 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCC----BCTTTTTTCTTCCEEECCSSCCCCBCT-----TTTTTCT
T ss_pred cCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCE----eChhhhccCCCCCEEECCCCcCCeeCH-----HHhcCCC
Confidence 467888888641 12367889999999843 222446778888888888888887666 5666666
Q ss_pred CCCEEEccCCCCC---------------------CCChHHhhcCCCCCEEEccccccc
Q 036330 141 WLKILNLYSNNVN---------------------NSLLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 141 ~L~~L~Ls~N~l~---------------------G~iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
+|++|++++|+++ +..+..+.++++|++|++++|.++
T Consensus 101 ~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 158 (330)
T 1xku_A 101 KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158 (330)
T ss_dssp TCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC
T ss_pred CCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC
Confidence 6666666665554 334455667777777777777775
No 87
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.05 E-value=2.3e-10 Score=104.12 Aligned_cols=91 Identities=21% Similarity=0.205 Sum_probs=77.4
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccc--cCCCCCCCEEEccCCCCCCCCh-HH
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLS--IGSLKWLKILNLYSNNVNNSLL-PS 159 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~--~~~l~~L~~L~Ls~N~l~G~iP-~~ 159 (187)
.+++.|+|++|.+++ ..+..+..+++|++|+|++|.+++.+| .. +..+++|++|+|++|++++..| ..
T Consensus 73 ~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~ 143 (844)
T 3j0a_A 73 PNLRILDLGSSKIYF----LHPDAFQGLFHLFELRLYFCGLSDAVL-----KDGYFRNLKALTRLDLSKNQIRSLYLHPS 143 (844)
T ss_dssp TTCCEEECTTCCCCE----ECTTSSCSCSSCCCEECTTCCCSSCCS-----TTCCCSSCSSCCEEEEESCCCCCCCCCGG
T ss_pred CCCCEEECCCCcCcc----cCHhHccCCcccCEeeCcCCCCCcccc-----cCccccccCCCCEEECCCCcccccccchh
Confidence 468888888888832 233568899999999999999998777 44 8999999999999999998655 67
Q ss_pred hhcCCCCCEEEcccccccccCCC
Q 036330 160 LTTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 160 l~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
++++++|++|+|++|.+++..|.
T Consensus 144 ~~~L~~L~~L~Ls~N~i~~~~~~ 166 (844)
T 3j0a_A 144 FGKLNSLKSIDFSSNQIFLVCEH 166 (844)
T ss_dssp GGTCSSCCEEEEESSCCCCCCSG
T ss_pred HhhCCCCCEEECCCCcCCeeCHH
Confidence 99999999999999999987664
No 88
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.03 E-value=3.5e-10 Score=97.61 Aligned_cols=71 Identities=24% Similarity=0.243 Sum_probs=46.0
Q ss_pred CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
+..+++|++|++++|.+++..| ..+..+++|++|++++|++++..|..+.++++|+.|++++|.++|.+|.
T Consensus 466 ~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 466 FTELRNLTFLDLSQCQLEQLSP-----TAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CTTCTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hhcccCCCEEECCCCccccCCh-----hhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 4455555666666665555545 5666667777777777777766556666677777777777777766664
No 89
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.02 E-value=5.6e-10 Score=102.19 Aligned_cols=88 Identities=23% Similarity=0.261 Sum_probs=68.5
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCc--CCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccC------CCCCCC
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFL--PFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYS------NNVNNS 155 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~--~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~------N~l~G~ 155 (187)
+++.|+|++|.++ .++ ..+. .+++|+.|+|++|.+++ +| ..+..+++|+.|+|++ |++.+.
T Consensus 729 ~L~~L~Ls~N~L~----~lp-~~l~~~~l~~L~~L~Ls~N~L~~-lp-----~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 729 LLTTIDLRFNKLT----SLS-DDFRATTLPYLSNMDVSYNCFSS-FP-----TQPLNSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp GCCEEECCSSCCC----CCC-GGGSTTTCTTCCEEECCSSCCSS-CC-----CGGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred CccEEECCCCCCc----cch-HHhhhccCCCcCEEEeCCCCCCc-cc-----hhhhcCCCCCEEECCCCCCccccccccc
Confidence 5666666666663 122 2233 67888888888888887 77 7888889999998866 778888
Q ss_pred ChHHhhcCCCCCEEEcccccccccCCCC
Q 036330 156 LLPSLTTIISLTNLSLGYCGIEGFIPNQ 183 (187)
Q Consensus 156 iP~~l~~l~~L~~L~Ls~N~l~G~iP~~ 183 (187)
+|..++++++|+.|+|++|++ |.||..
T Consensus 798 ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~ 824 (876)
T 4ecn_A 798 WPTGITTCPSLIQLQIGSNDI-RKVDEK 824 (876)
T ss_dssp CCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred ChHHHhcCCCCCEEECCCCCC-CccCHh
Confidence 999999999999999999999 788875
No 90
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.02 E-value=4.3e-10 Score=90.86 Aligned_cols=92 Identities=18% Similarity=0.161 Sum_probs=62.8
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCcccccc--CCCCCCCEEEccCCCCCC--CChH
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSI--GSLKWLKILNLYSNNVNN--SLLP 158 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~--~~l~~L~~L~Ls~N~l~G--~iP~ 158 (187)
.+++.|++++|.+++ ..+..+..+++|++|++++|.+.|.++. |..+ ..+++|++|++++|++++ .+|.
T Consensus 149 ~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 221 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLN----FSCEQVRVFPALSTLDLSDNPELGERGL---ISALCPLKFPTLQVLALRNAGMETPSGVCS 221 (312)
T ss_dssp TTCCEEEEESCSCCC----CCTTTCCCCSSCCEEECCSCTTCHHHHH---HHHSCTTSCTTCCEEECTTSCCCCHHHHHH
T ss_pred CCCcEEEeeCCCCcc----chHHHhccCCCCCEEECCCCCcCcchHH---HHHHHhccCCCCCEEECCCCcCcchHHHHH
Confidence 457778888887732 2224577889999999999998876320 0334 677788888888888773 2332
Q ss_pred -HhhcCCCCCEEEcccccccccCC
Q 036330 159 -SLTTIISLTNLSLGYCGIEGFIP 181 (187)
Q Consensus 159 -~l~~l~~L~~L~Ls~N~l~G~iP 181 (187)
.+..+++|++|++++|++++.+|
T Consensus 222 ~~~~~l~~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 222 ALAAARVQLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp HHHHTTCCCSEEECTTSCCCSSCC
T ss_pred HHHhcCCCCCEEECCCCcCCcccc
Confidence 23567778888888887777664
No 91
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.02 E-value=4.2e-10 Score=97.14 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=60.4
Q ss_pred cCcCCCCCcEEEccCCccc-cccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330 106 MFLPFQELESLDLSYNSFY-GVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 106 ~l~~l~~L~~L~Ls~N~l~-g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
.+..+++|++|++++|.++ +.+| ..+..+++|++|++++|++++..|..++++++|++|++++|++++..|.
T Consensus 440 ~~~~l~~L~~L~l~~n~l~~~~~p-----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 512 (570)
T 2z63_A 440 IFNGLSSLEVLKMAGNSFQENFLP-----DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512 (570)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEEC-----SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred hhhcCCcCcEEECcCCcCccccch-----hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence 3566778888888888876 5677 7889999999999999999988899999999999999999999965543
No 92
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.01 E-value=6.7e-10 Score=96.39 Aligned_cols=90 Identities=16% Similarity=0.113 Sum_probs=46.3
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCcccc--ccCCCccccccCCCCCCCEEEccCCCCCCCChHH-
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYG--VYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPS- 159 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g--~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~- 159 (187)
.+++.|++++|.+++. .+..+..+++|++|++++|.+++ .+| ..+..+++|++|++++|++++.+|..
T Consensus 353 ~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~~~l~~L~~L~l~~N~l~~~~~~~~ 423 (562)
T 3a79_B 353 SSFTFLNFTQNVFTDS----VFQGCSTLKRLQTLILQRNGLKNFFKVA-----LMTKNMSSLETLDVSLNSLNSHAYDRT 423 (562)
T ss_dssp CCCCEEECCSSCCCTT----TTTTCCSCSSCCEEECCSSCCCBTTHHH-----HTTTTCTTCCEEECTTSCCBSCCSSCC
T ss_pred CCceEEECCCCccccc----hhhhhcccCCCCEEECCCCCcCCcccch-----hhhcCCCCCCEEECCCCcCCCccChhh
Confidence 4566677777666321 11234555566666666666554 233 34555555555555555555544432
Q ss_pred hhcCCCCCEEEcccccccccCC
Q 036330 160 LTTIISLTNLSLGYCGIEGFIP 181 (187)
Q Consensus 160 l~~l~~L~~L~Ls~N~l~G~iP 181 (187)
+..+++|++|++++|+++|.+|
T Consensus 424 ~~~l~~L~~L~l~~n~l~~~~~ 445 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLTGSVF 445 (562)
T ss_dssp CCCCTTCCEEECCSSCCCGGGG
T ss_pred hcCcccCCEEECCCCCCCcchh
Confidence 4444455555555555544443
No 93
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.01 E-value=9e-10 Score=91.28 Aligned_cols=66 Identities=21% Similarity=0.171 Sum_probs=34.5
Q ss_pred CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
+..+++|++|++++|.++ .+|. ..+..+++|++|++++|++++..|..++.+++|++|++++|+++
T Consensus 113 ~~~l~~L~~L~L~~n~l~-~l~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 113 FQNVPLLTVLVLERNDLS-SLPR----GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp TTTCTTCCEEECCSSCCC-CCCT----TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred hcCCCCCCEEECCCCccC-cCCH----HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 444555555555555555 3330 22355555555555555555444445555555555555555555
No 94
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.00 E-value=1e-09 Score=96.22 Aligned_cols=87 Identities=18% Similarity=0.152 Sum_probs=73.6
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
.+++.|+|++|.+++ +++..+..+++|++|+|++|.+++ +|. ..++.+++|++|+|++|.+++..|..++.
T Consensus 99 ~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~-l~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 169 (597)
T 3oja_B 99 HTIQKLYMGFNAIRY----LPPHVFQNVPLLTVLVLERNDLSS-LPR----GIFHNTPKLTTLSMSNNNLERIEDDTFQA 169 (597)
T ss_dssp TTCCEEECCSSCCCC----CCTTTTTTCTTCCEEECCSSCCCC-CCT----TTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred CCCCEEECCCCcCCC----CCHHHHcCCCCCCEEEeeCCCCCC-CCH----HHhccCCCCCEEEeeCCcCCCCChhhhhc
Confidence 468899999999843 333557889999999999999985 451 45689999999999999999888888999
Q ss_pred CCCCCEEEcccccccc
Q 036330 163 IISLTNLSLGYCGIEG 178 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G 178 (187)
+++|++|++++|.+++
T Consensus 170 l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 170 TTSLQNLQLSSNRLTH 185 (597)
T ss_dssp CTTCCEEECTTSCCSB
T ss_pred CCcCcEEECcCCCCCC
Confidence 9999999999999985
No 95
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.00 E-value=6.1e-10 Score=94.55 Aligned_cols=87 Identities=20% Similarity=0.173 Sum_probs=42.5
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
.+++.|+|++|.+++ +.+..+..+++|++|+|++|.+++..+ ..+.++++|++|+|++|++++..|..+.+
T Consensus 56 ~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 126 (477)
T 2id5_A 56 PHLEELELNENIVSA----VEPGAFNNLFNLRTLGLRSNRLKLIPL-----GVFTGLSNLTKLDISENKIVILLDYMFQD 126 (477)
T ss_dssp TTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCCSCCT-----TSSTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred CCCCEEECCCCccCE----eChhhhhCCccCCEEECCCCcCCccCc-----ccccCCCCCCEEECCCCccccCChhHccc
Confidence 346666666666531 111234455555555555555553222 23444555555555555555444444445
Q ss_pred CCCCCEEEcccccccc
Q 036330 163 IISLTNLSLGYCGIEG 178 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G 178 (187)
+++|++|++++|.+++
T Consensus 127 l~~L~~L~l~~n~l~~ 142 (477)
T 2id5_A 127 LYNLKSLEVGDNDLVY 142 (477)
T ss_dssp CTTCCEEEECCTTCCE
T ss_pred cccCCEEECCCCccce
Confidence 5555555555554443
No 96
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.00 E-value=4.1e-10 Score=96.68 Aligned_cols=106 Identities=20% Similarity=0.077 Sum_probs=62.8
Q ss_pred CCCcceeecCCCCCCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCc------------------
Q 036330 70 CRWEQVKCVNATTRRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEG------------------ 131 (187)
Q Consensus 70 C~w~gv~C~~~~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~------------------ 131 (187)
|.+.++.|.. ...++.|+|++|.+++.. +..+..+++|+.|+|++|.+++.+|...
T Consensus 109 N~l~~~~~~~--l~~L~~L~L~~N~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 109 NNISRVSCSR--GQGKKNIYLANNKITMLR----DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp SCCCCEEECC--CSSCEEEECCSSCCCSGG----GBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCCCCccc--cCCCCEEECCCCCCCCCC----chhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 3445555543 345677777777663221 1224445555555555555555443100
Q ss_pred cccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCCC
Q 036330 132 MYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQ 183 (187)
Q Consensus 132 ~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~ 183 (187)
..+....+++|++|+|++|++++ +|+.+..+++|+.|+|++|.|++ ||..
T Consensus 183 ~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~ 232 (487)
T 3oja_A 183 DVKGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKA 232 (487)
T ss_dssp EEECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTT
T ss_pred cccccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchh
Confidence 00123347788888888888886 45558888888888888888885 6654
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.99 E-value=3.3e-10 Score=99.36 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCC-----CCcce-eecCCCCCCEEEEEcCCCCCCCCCCCCCCc---------cC----cCCCCCcEEEcc
Q 036330 59 TSWVDDEMSDCC-----RWEQV-KCVNATTRRVKELSLDGITLGANSGFLNLS---------MF----LPFQELESLDLS 119 (187)
Q Consensus 59 ~~W~~~~~~~~C-----~w~gv-~C~~~~~~~v~~L~L~~~~l~~~~~~~~~~---------~l----~~l~~L~~L~Ls 119 (187)
.+|... .++| .|.|+ .|.. .+++.|+|+++++++++..+... .+ ..+++|++|+++
T Consensus 34 ~~W~~~--~~~~~~~~~~~~~l~~C~~---~~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls 108 (571)
T 3cvr_A 34 DKWEKQ--ALPGENRNEAVSLLKECLI---NQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDAC 108 (571)
T ss_dssp HHHHTT--CCTTCCHHHHHHHHHHHHH---TTCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred HHHhcc--CCccccccchhhhcccccc---CCccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccccccCCCCEEEcc
Confidence 346443 5677 68998 6764 46888888888875432211000 00 123556666666
Q ss_pred CCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330 120 YNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 120 ~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
+|.|++ +| . +.. +|++|+|++|++++ +|. .+++|++|+|++|+|+
T Consensus 109 ~N~l~~-ip-----~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 109 DNRLST-LP-----E-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT 153 (571)
T ss_dssp SSCCSC-CC-----C-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred CCCCCC-cc-----h-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC
Confidence 666654 55 3 332 55555555555554 444 3445555555555555
No 98
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.98 E-value=1.7e-09 Score=94.26 Aligned_cols=90 Identities=23% Similarity=0.166 Sum_probs=63.9
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI 163 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l 163 (187)
.++.++++++.+++ ++...+..+++|++|++++|.++ .+| ..+..+++|++|++++|++++..|..+.++
T Consensus 255 ~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~-~lp-----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 324 (606)
T 3t6q_A 255 SVESINLQKHYFFN----ISSNTFHCFSGLQELDLTATHLS-ELP-----SGLVGLSTLKKLVLSANKFENLCQISASNF 324 (606)
T ss_dssp EEEEEECTTCCCSS----CCTTTTTTCTTCSEEECTTSCCS-CCC-----SSCCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred ceeEEEeecCccCc----cCHHHhccccCCCEEeccCCccC-CCC-----hhhcccccCCEEECccCCcCcCchhhhhcc
Confidence 57888888887742 22244667777888888888777 666 667777777777777777776666677777
Q ss_pred CCCCEEEcccccccccCCCC
Q 036330 164 ISLTNLSLGYCGIEGFIPNQ 183 (187)
Q Consensus 164 ~~L~~L~Ls~N~l~G~iP~~ 183 (187)
++|++|++++|.+.|.+|..
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~ 344 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGTG 344 (606)
T ss_dssp TTCSEEECCSCSSCCBCCSS
T ss_pred CcCCEEECCCCCcccccchh
Confidence 77777777777777766653
No 99
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.98 E-value=8.5e-10 Score=97.51 Aligned_cols=86 Identities=24% Similarity=0.215 Sum_probs=41.6
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI 163 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l 163 (187)
+++.|+|++|.++. ++...+..+++|++|++++|.+++..| ..++.+++|++|++++|++++..|..++++
T Consensus 74 ~L~~L~L~~n~l~~----l~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 144 (680)
T 1ziw_A 74 MLKVLNLQHNELSQ----LSDKTFAFCTNLTELHLMSNSIQKIKN-----NPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144 (680)
T ss_dssp TCCEEECCSSCCCC----CCTTTTTTCTTCSEEECCSSCCCCCCS-----CTTTTCTTCCEEECCSSCCSCCCCCSSSCC
T ss_pred CcCEEECCCCccCc----cChhhhccCCCCCEEECCCCccCccCh-----hHccccCCCCEEECCCCcccccCchhhccc
Confidence 34555555555521 222234455555555555555554333 344445555555555555544444444444
Q ss_pred CCCCEEEcccccccc
Q 036330 164 ISLTNLSLGYCGIEG 178 (187)
Q Consensus 164 ~~L~~L~Ls~N~l~G 178 (187)
++|++|++++|.+++
T Consensus 145 ~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 145 ENLQELLLSNNKIQA 159 (680)
T ss_dssp TTCCEEECCSSCCCC
T ss_pred ccCCEEEccCCcccc
Confidence 444444444444443
No 100
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.97 E-value=8e-10 Score=89.08 Aligned_cols=91 Identities=20% Similarity=0.154 Sum_probs=49.1
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccc--cCCCccccccCCCCCCCEEEccCCCCCCCChH--
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGV--YEKEGMYLSIGSLKWLKILNLYSNNVNNSLLP-- 158 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~--ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~-- 158 (187)
.+++.|+|++|.+++ .....+..+++|++|+|++|.+.+. ++.. ..++.+++|++|+|++|+++ .+|.
T Consensus 145 ~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---~~~~~l~~L~~L~Ls~N~l~-~l~~~~ 216 (310)
T 4glp_A 145 PGLKVLSIAQAHSPA----FSCEQVRAFPALTSLDLSDNPGLGERGLMAA---LCPHKFPAIQNLALRNTGME-TPTGVC 216 (310)
T ss_dssp SCCCEEEEECCSSCC----CCTTSCCCCTTCCEEECCSCTTCHHHHHHTT---SCTTSSCCCCSCBCCSSCCC-CHHHHH
T ss_pred cCCCEEEeeCCCcch----hhHHHhccCCCCCEEECCCCCCccchhhhHH---HhhhcCCCCCEEECCCCCCC-chHHHH
Confidence 467888888888832 2224467788888899988887653 2210 11234444444444444443 1222
Q ss_pred --HhhcCCCCCEEEcccccccccCC
Q 036330 159 --SLTTIISLTNLSLGYCGIEGFIP 181 (187)
Q Consensus 159 --~l~~l~~L~~L~Ls~N~l~G~iP 181 (187)
.++.+++|++|+|++|++++.+|
T Consensus 217 ~~l~~~l~~L~~L~Ls~N~l~~~~p 241 (310)
T 4glp_A 217 AALAAAGVQPHSLDLSHNSLRATVN 241 (310)
T ss_dssp HHHHHHTCCCSSEECTTSCCCCCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCccch
Confidence 12344444444444444444433
No 101
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.93 E-value=7.1e-10 Score=86.01 Aligned_cols=90 Identities=14% Similarity=0.194 Sum_probs=45.4
Q ss_pred CCEEEEEcCCCC-CCCCCCCCCCccCcCCCCCcEEEccC-CccccccCCCccccccCCCCCCC-----------------
Q 036330 83 RRVKELSLDGIT-LGANSGFLNLSMFLPFQELESLDLSY-NSFYGVYEKEGMYLSIGSLKWLK----------------- 143 (187)
Q Consensus 83 ~~v~~L~L~~~~-l~~~~~~~~~~~l~~l~~L~~L~Ls~-N~l~g~ip~~~~~~~~~~l~~L~----------------- 143 (187)
.+++.|++++|. ++. ++...+..+++|++|++++ |.+++..+ ..+..+++|+
T Consensus 55 ~~L~~L~l~~n~~l~~----i~~~~f~~l~~L~~L~l~~~n~l~~i~~-----~~f~~l~~L~~L~l~~n~l~~lp~~~~ 125 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQ----LESHSFYNLSKVTHIEIRNTRNLTYIDP-----DALKELPLLKFLGIFNTGLKMFPDLTK 125 (239)
T ss_dssp TTCCEEEEECCSSCCE----ECTTTEESCTTCCEEEEEEETTCCEECT-----TSEECCTTCCEEEEEEECCCSCCCCTT
T ss_pred CCCcEEeCCCCCCcce----eCHhHcCCCcCCcEEECCCCCCeeEcCH-----HHhCCCCCCCEEeCCCCCCcccccccc
Confidence 356666666665 521 2222345555666666665 55553322 3344444444
Q ss_pred --------EEEccCC-CCCCCChHHhhcCCCCC-EEEcccccccccCCC
Q 036330 144 --------ILNLYSN-NVNNSLLPSLTTIISLT-NLSLGYCGIEGFIPN 182 (187)
Q Consensus 144 --------~L~Ls~N-~l~G~iP~~l~~l~~L~-~L~Ls~N~l~G~iP~ 182 (187)
+|++++| ++++..+..+.++++|+ .|++++|+++ .||.
T Consensus 126 l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~ 173 (239)
T 2xwt_C 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG 173 (239)
T ss_dssp CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT
T ss_pred ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH
Confidence 5555555 44433333455555555 5555555555 5554
No 102
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.91 E-value=2.4e-09 Score=91.86 Aligned_cols=66 Identities=23% Similarity=0.226 Sum_probs=56.0
Q ss_pred CCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc-ccCC
Q 036330 109 PFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE-GFIP 181 (187)
Q Consensus 109 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~-G~iP 181 (187)
.+++|+.|+|++|.+++ +| +.+..+++|+.|+|++|++++ +|..++.+++|+.|++++|.+. |.+|
T Consensus 189 ~l~~L~~L~Ls~N~l~~-~~-----~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAF-MG-----PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp CCTTCCEEECCSSCCCE-EC-----GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred cCCCCCEEECCCCCCCC-CC-----HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchH
Confidence 46777777888877775 34 568999999999999999995 8988999999999999999998 6555
No 103
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.89 E-value=3.3e-09 Score=86.24 Aligned_cols=68 Identities=22% Similarity=0.271 Sum_probs=54.5
Q ss_pred CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCC
Q 036330 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIP 181 (187)
Q Consensus 107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP 181 (187)
+..+++|++|++++|.+++ +| .+..+++|++|++++|++++..|..++.+++|++|++++|.+++..|
T Consensus 261 ~~~l~~L~~L~l~~n~l~~-~~------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISD-IS------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC-CG------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred HhcCCCcCEEEccCCccCC-Ch------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 4556677777777776664 23 57788899999999999998888889999999999999999987655
No 104
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.89 E-value=2e-09 Score=88.08 Aligned_cols=83 Identities=25% Similarity=0.318 Sum_probs=49.2
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChH--Hh
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLP--SL 160 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~--~l 160 (187)
.+++.|++++|.+++ ..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|+++ .+|. .+
T Consensus 76 ~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~-~l~~~~~~ 145 (353)
T 2z80_A 76 VNLQALVLTSNGINT----IEEDSFSSLGSLEHLDLSYNYLSNLSS-----SWFKPLSSLTFLNLLGNPYK-TLGETSLF 145 (353)
T ss_dssp TTCCEEECTTSCCCE----ECTTTTTTCTTCCEEECCSSCCSSCCH-----HHHTTCTTCSEEECTTCCCS-SSCSSCSC
T ss_pred CCCCEEECCCCccCc----cCHhhcCCCCCCCEEECCCCcCCcCCH-----hHhCCCccCCEEECCCCCCc-ccCchhhh
Confidence 467788888887732 222335666777777777777764222 23556666666666666665 3443 45
Q ss_pred hcCCCCCEEEccccc
Q 036330 161 TTIISLTNLSLGYCG 175 (187)
Q Consensus 161 ~~l~~L~~L~Ls~N~ 175 (187)
.++++|++|++++|+
T Consensus 146 ~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 146 SHLTKLQILRVGNMD 160 (353)
T ss_dssp TTCTTCCEEEEEESS
T ss_pred ccCCCCcEEECCCCc
Confidence 556666666666653
No 105
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.86 E-value=2.8e-09 Score=86.64 Aligned_cols=82 Identities=21% Similarity=0.210 Sum_probs=65.6
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
.+++.+++++|.++.. +.+..+++|+.|++++|.+++..| ..+..+++|++|++++|++++..| +..
T Consensus 265 ~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L~~n~l~~~~~-----~~l~~l~~L~~L~L~~n~l~~~~~--~~~ 331 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI------SVLNNLSQLNSLFLNNNQLGNEDM-----EVIGGLTNLTTLFLSQNHITDIRP--LAS 331 (347)
T ss_dssp TTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSSCCCGGGH-----HHHHTCTTCSEEECCSSSCCCCGG--GGG
T ss_pred CCcCEEEccCCccCCC------hhhcCCCCCCEEECcCCcCCCcCh-----hHhhccccCCEEEccCCccccccC--hhh
Confidence 3456666666665211 236788999999999999998887 789999999999999999998666 889
Q ss_pred CCCCCEEEccccccc
Q 036330 163 IISLTNLSLGYCGIE 177 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~ 177 (187)
+++|++|++++|.|+
T Consensus 332 l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 332 LSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEESSSCC---
T ss_pred hhccceeehhhhccc
Confidence 999999999999986
No 106
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.85 E-value=1.5e-09 Score=87.81 Aligned_cols=88 Identities=26% Similarity=0.285 Sum_probs=46.0
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
.+++.|++++|.+++... ......+++|++|++++|.+++. | ....+++|++|+|++|++++ +|+.+..
T Consensus 144 ~~L~~L~Ls~N~l~~~~~---~~~~~~l~~L~~L~L~~N~l~~~-~------~~~~l~~L~~L~Ls~N~l~~-l~~~~~~ 212 (317)
T 3o53_A 144 SRVQYLDLKLNEIDTVNF---AELAASSDTLEHLNLQYNFIYDV-K------GQVVFAKLKTLDLSSNKLAF-MGPEFQS 212 (317)
T ss_dssp SSEEEEECTTSCCCEEEG---GGGGGGTTTCCEEECTTSCCCEE-E------CCCCCTTCCEEECCSSCCCE-ECGGGGG
T ss_pred CCCCEEECCCCCCCcccH---HHHhhccCcCCEEECCCCcCccc-c------cccccccCCEEECCCCcCCc-chhhhcc
Confidence 467888888887732111 11123456666666666666533 3 12235555555555555553 3334555
Q ss_pred CCCCCEEEcccccccccCCC
Q 036330 163 IISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G~iP~ 182 (187)
+++|+.|++++|+++ .+|.
T Consensus 213 l~~L~~L~L~~N~l~-~l~~ 231 (317)
T 3o53_A 213 AAGVTWISLRNNKLV-LIEK 231 (317)
T ss_dssp GTTCSEEECTTSCCC-EECT
T ss_pred cCcccEEECcCCccc-chhh
Confidence 555555555555555 3443
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.84 E-value=7.2e-09 Score=83.05 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=20.4
Q ss_pred cCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330 136 IGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 136 ~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
+..+++|++|++++|++++..| +..+++|+.|++++|.++
T Consensus 152 l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 152 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred hccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 4445555555555555554322 455555555555555554
No 108
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.84 E-value=2.4e-09 Score=86.24 Aligned_cols=90 Identities=21% Similarity=0.123 Sum_probs=62.4
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccC--cCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhh
Q 036330 84 RVKELSLDGITLGANSGFLNLSMF--LPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT 161 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l--~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~ 161 (187)
++++|+++++.+++. .+ ..+ ..+++|++|++++|.+++..|... ...+..+++|++|+|++|++++..|..++
T Consensus 92 ~L~~L~l~~n~l~~~---~~-~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 166 (310)
T 4glp_A 92 RLKELTLEDLKITGT---MP-PLPLEATGLALSSLRLRNVSWATGRSWLA-ELQQWLKPGLKVLSIAQAHSPAFSCEQVR 166 (310)
T ss_dssp CCCEEEEESCCCBSC---CC-CCSSSCCCBCCSSCEEESCCCSSTTSSHH-HHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred ceeEEEeeCCEeccc---hh-hhhhhccCCCCCEEEeecccccchhhhhH-HHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence 378888888888422 22 223 677888888888888886544100 01234677888888888888777777778
Q ss_pred cCCCCCEEEcccccccc
Q 036330 162 TIISLTNLSLGYCGIEG 178 (187)
Q Consensus 162 ~l~~L~~L~Ls~N~l~G 178 (187)
.+++|++|+|++|++.|
T Consensus 167 ~l~~L~~L~Ls~N~l~~ 183 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLG 183 (310)
T ss_dssp CCTTCCEEECCSCTTCH
T ss_pred cCCCCCEEECCCCCCcc
Confidence 88888888888887765
No 109
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.82 E-value=7.3e-09 Score=83.75 Aligned_cols=81 Identities=20% Similarity=0.146 Sum_probs=46.7
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI 163 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l 163 (187)
.++.|++++|.++... ....+++|++|++++|.+++ +| ..+..+++|++|+|++|+++ .+|..+..+
T Consensus 170 ~L~~L~L~~N~l~~~~------~~~~l~~L~~L~Ls~N~l~~-l~-----~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 170 TLEHLNLQYNFIYDVK------GQVVFAKLKTLDLSSNKLAF-MG-----PEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp TCCEEECTTSCCCEEE------CCCCCTTCCEEECCSSCCCE-EC-----GGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred cCCEEECCCCcCcccc------cccccccCCEEECCCCcCCc-ch-----hhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 4566666666653211 12235566666666666663 33 34566666666666666666 356666666
Q ss_pred CCCCEEEccccccc
Q 036330 164 ISLTNLSLGYCGIE 177 (187)
Q Consensus 164 ~~L~~L~Ls~N~l~ 177 (187)
++|+.|++++|.++
T Consensus 237 ~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 237 QNLEHFDLRGNGFH 250 (317)
T ss_dssp TTCCEEECTTCCCB
T ss_pred CCCCEEEccCCCcc
Confidence 66666666666665
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.80 E-value=1.2e-08 Score=81.71 Aligned_cols=64 Identities=25% Similarity=0.281 Sum_probs=39.7
Q ss_pred CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccccc
Q 036330 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGF 179 (187)
Q Consensus 107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~ 179 (187)
+..+++|++|++++|.+++ + +.+..+++|++|++++|++++. +.++.+++|+.|++++|++++.
T Consensus 108 l~~l~~L~~L~L~~n~i~~-~------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 108 LKDLKKLKSLSLEHNGISD-I------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp GTTCTTCCEEECTTSCCCC-C------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred hccCCCCCEEECCCCcCCC-C------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccc
Confidence 4445555555555555553 2 2456667777777777777653 4566777777777777777653
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.80 E-value=2e-08 Score=79.39 Aligned_cols=42 Identities=29% Similarity=0.315 Sum_probs=25.5
Q ss_pred ccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccc
Q 036330 135 SIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEG 178 (187)
Q Consensus 135 ~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G 178 (187)
.+..+++|++|++++|++++ +| .++.+++|+.|++++|++++
T Consensus 123 ~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 123 SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCB
T ss_pred hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcc
Confidence 35566666666666666664 33 45666666666666666654
No 112
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.79 E-value=7.2e-09 Score=81.93 Aligned_cols=64 Identities=22% Similarity=0.283 Sum_probs=55.9
Q ss_pred CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccccc
Q 036330 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGF 179 (187)
Q Consensus 107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~ 179 (187)
+..+++|+.|++++|.+++ +| .+..+++|++|++++|++++. ..+..+++|+.|++++|.+++.
T Consensus 124 l~~l~~L~~L~Ls~N~i~~-~~------~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 124 LIHLKNLEILSIRNNKLKS-IV------MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GTTCTTCCEEECTTSCCCB-CG------GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred hcCcccccEEECCCCcCCC-Ch------HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 6678889999999998885 34 588899999999999999975 6789999999999999999854
No 113
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.79 E-value=4e-09 Score=89.76 Aligned_cols=66 Identities=21% Similarity=0.164 Sum_probs=34.8
Q ss_pred CCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCC--CChHHhhcC-------------CCCCEEEcccc
Q 036330 110 FQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNN--SLLPSLTTI-------------ISLTNLSLGYC 174 (187)
Q Consensus 110 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G--~iP~~l~~l-------------~~L~~L~Ls~N 174 (187)
+++|++|++++|.++ .+| . .+++|++|++++|++++ .+|.+++++ ++|++|++++|
T Consensus 336 ~~~L~~L~L~~N~l~-~lp-----~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N 406 (454)
T 1jl5_A 336 PPRLERLIASFNHLA-EVP-----E---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN 406 (454)
T ss_dssp CTTCCEEECCSSCCS-CCC-----C---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------
T ss_pred CCcCCEEECCCCccc-ccc-----c---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC
Confidence 356777777777776 455 4 47889999999999998 788888877 78999999999
Q ss_pred cccc--cCCCCC
Q 036330 175 GIEG--FIPNQG 184 (187)
Q Consensus 175 ~l~G--~iP~~~ 184 (187)
+++| .||.+.
T Consensus 407 ~l~~~~~iP~sl 418 (454)
T 1jl5_A 407 PLREFPDIPESV 418 (454)
T ss_dssp ------------
T ss_pred cCCccccchhhH
Confidence 9997 888753
No 114
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.79 E-value=1.5e-08 Score=81.83 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=21.1
Q ss_pred cCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccc
Q 036330 136 IGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEG 178 (187)
Q Consensus 136 ~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G 178 (187)
+..+++|++|++++|++++ +|. +..+++|++|++++|++++
T Consensus 169 l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCCB
T ss_pred hcCCCCCCEEECCCCccCc-Chh-hcCCCCCCEEEccCCccCc
Confidence 4455555555555555553 222 4555555555555555553
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.79 E-value=1.4e-08 Score=89.59 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=18.5
Q ss_pred cCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEccccccc
Q 036330 136 IGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 136 ~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
+..+++|+.|+|++|++++..| +..+++|+.|+|++|+|+
T Consensus 149 l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 149 LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp GGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred hcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 4444444444444444444333 444444444444444444
No 116
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.78 E-value=1.5e-08 Score=86.30 Aligned_cols=80 Identities=18% Similarity=0.137 Sum_probs=59.7
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
.+++.|+++++.+++. + +..+++|++|++++|.+++ +| ++.+++|++|++++|++++ +| ++.
T Consensus 64 ~~L~~L~Ls~n~l~~~------~-~~~l~~L~~L~Ls~N~l~~-~~-------~~~l~~L~~L~L~~N~l~~-l~--~~~ 125 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL------D-LSQNTNLTYLACDSNKLTN-LD-------VTPLTKLTYLNCDTNKLTK-LD--VSQ 125 (457)
T ss_dssp TTCSEEECCSSCCSCC------C-CTTCTTCSEEECCSSCCSC-CC-------CTTCTTCCEEECCSSCCSC-CC--CTT
T ss_pred CCCCEEEccCCcCCeE------c-cccCCCCCEEECcCCCCce-ee-------cCCCCcCCEEECCCCcCCe-ec--CCC
Confidence 4577777777777321 1 5667788888888888775 23 6778888888888888886 55 788
Q ss_pred CCCCCEEEcccccccccCC
Q 036330 163 IISLTNLSLGYCGIEGFIP 181 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~G~iP 181 (187)
+++|++|++++|++++ +|
T Consensus 126 l~~L~~L~l~~N~l~~-l~ 143 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTE-ID 143 (457)
T ss_dssp CTTCCEEECTTSCCSC-CC
T ss_pred CCcCCEEECCCCccce-ec
Confidence 8888888888888886 44
No 117
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.77 E-value=1.7e-08 Score=88.93 Aligned_cols=83 Identities=25% Similarity=0.285 Sum_probs=58.2
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI 163 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l 163 (187)
+++.|+|++|.+++. +.+..+++|+.|+|++|.+.+ ++ .+..+++|+.|+|++|++++. ..+..+
T Consensus 88 ~L~~L~Ls~N~l~~l------~~l~~l~~L~~L~Ls~N~l~~-l~------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l 152 (605)
T 1m9s_A 88 NLGWLFLDENKIKDL------SSLKDLKKLKSLSLEHNGISD-IN------GLVHLPQLESLYLGNNKITDI--TVLSRL 152 (605)
T ss_dssp TCCEEECCSSCCCCC------TTSTTCTTCCEEECTTSCCCC-CG------GGGGCTTCSEEECCSSCCCCC--GGGGSC
T ss_pred CCCEEECcCCCCCCC------hhhccCCCCCEEEecCCCCCC-Cc------cccCCCccCEEECCCCccCCc--hhhccc
Confidence 455555555555211 235566777777777777764 33 577888888888888888864 568888
Q ss_pred CCCCEEEcccccccccCC
Q 036330 164 ISLTNLSLGYCGIEGFIP 181 (187)
Q Consensus 164 ~~L~~L~Ls~N~l~G~iP 181 (187)
++|+.|+|++|++++..|
T Consensus 153 ~~L~~L~Ls~N~l~~~~~ 170 (605)
T 1m9s_A 153 TKLDTLSLEDNQISDIVP 170 (605)
T ss_dssp TTCSEEECCSSCCCCCGG
T ss_pred CCCCEEECcCCcCCCchh
Confidence 889999999988887655
No 118
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.77 E-value=1.7e-08 Score=81.47 Aligned_cols=80 Identities=28% Similarity=0.418 Sum_probs=41.3
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
.+++.|++++|.+++. +.+..+++|+.|++++|.+++ +| .+..+++|++|++++|++++. |. ++.
T Consensus 85 ~~L~~L~L~~n~l~~~------~~~~~l~~L~~L~l~~n~l~~-~~------~l~~l~~L~~L~l~~n~l~~~-~~-l~~ 149 (308)
T 1h6u_A 85 TKITELELSGNPLKNV------SAIAGLQSIKTLDLTSTQITD-VT------PLAGLSNLQVLYLDLNQITNI-SP-LAG 149 (308)
T ss_dssp CSCCEEECCSCCCSCC------GGGTTCTTCCEEECTTSCCCC-CG------GGTTCTTCCEEECCSSCCCCC-GG-GGG
T ss_pred CCCCEEEccCCcCCCc------hhhcCCCCCCEEECCCCCCCC-ch------hhcCCCCCCEEECCCCccCcC-cc-ccC
Confidence 4678888888877422 125556666666666666654 23 244444444444444444432 21 444
Q ss_pred CCCCCEEEccccccc
Q 036330 163 IISLTNLSLGYCGIE 177 (187)
Q Consensus 163 l~~L~~L~Ls~N~l~ 177 (187)
+++|++|++++|+++
T Consensus 150 l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 150 LTNLQYLSIGNAQVS 164 (308)
T ss_dssp CTTCCEEECCSSCCC
T ss_pred CCCccEEEccCCcCC
Confidence 444444444444444
No 119
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.75 E-value=1.3e-08 Score=89.97 Aligned_cols=63 Identities=24% Similarity=0.157 Sum_probs=51.5
Q ss_pred CCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330 110 FQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 110 l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
+++|+.|++++|.|+ .+| . .+++|++|+|++|+++ .+|..+.++++|+.|+|++|.++|.+|.
T Consensus 240 l~~L~~L~Ls~N~L~-~lp-----~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 240 PSELKELMVSGNRLT-SLP-----M---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CTTCCEEECCSSCCS-CCC-----C---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCcCcEEECCCCCCC-cCC-----c---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 456666666666666 455 3 5688999999999999 8899999999999999999999987664
No 120
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.75 E-value=1.7e-08 Score=85.63 Aligned_cols=42 Identities=19% Similarity=0.231 Sum_probs=23.5
Q ss_pred ccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccc
Q 036330 135 SIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEG 178 (187)
Q Consensus 135 ~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G 178 (187)
.+..+++|++|++++|++++..| +..+++|+.|++++|.+++
T Consensus 348 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 348 SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 34455555555555555555444 5555556666666665554
No 121
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.73 E-value=7.2e-09 Score=83.77 Aligned_cols=85 Identities=15% Similarity=0.153 Sum_probs=49.7
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccc-cCCCccccccCCCCCCCEEEccCCCCCCCChHHhhc
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGV-YEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTT 162 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~-ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~ 162 (187)
+++.++++++.+.+.. ..+..+++|++|++++|.+++. +| ..+..+++|++|++++|++++..|..++.
T Consensus 71 ~l~~L~l~~n~l~~~~-----~~~~~~~~L~~L~L~~~~l~~~~~~-----~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPL-----AEHFSPFRVQHMDLSNSVIEVSTLH-----GILSQCSKLQNLSLEGLRLSDPIVNTLAK 140 (336)
T ss_dssp TCSEEECTTCEECSCC-----CSCCCCBCCCEEECTTCEECHHHHH-----HHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred cceEEEcCCccccccc-----hhhccCCCCCEEEccCCCcCHHHHH-----HHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence 4555555555552111 1133566777777777766654 55 45566666666666666666666666666
Q ss_pred CCCCCEEEcccc-cccc
Q 036330 163 IISLTNLSLGYC-GIEG 178 (187)
Q Consensus 163 l~~L~~L~Ls~N-~l~G 178 (187)
+++|++|++++| .+++
T Consensus 141 ~~~L~~L~L~~~~~l~~ 157 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSE 157 (336)
T ss_dssp CTTCSEEECTTCBSCCH
T ss_pred CCCCCEEECCCCCCCCH
Confidence 666666666666 4553
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.73 E-value=1.1e-08 Score=89.66 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=43.0
Q ss_pred CCCcEEEccCCccccccCCCccccccCCCCCC-------CEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330 111 QELESLDLSYNSFYGVYEKEGMYLSIGSLKWL-------KILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 111 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L-------~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
++|+.|+|++|.|+ .+| . +.. +| +.|+|++|+++ .+|..+..+++|+.|+|++|.|+|.+|.
T Consensus 180 ~~L~~L~Ls~N~L~-~lp-----~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 180 ESLEALDVSTNLLE-SLP-----A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp TTCCEEECCSSCCS-SCC-----C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred CCCCEEECcCCCCC-chh-----h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 34555555555555 444 3 333 56 88888888888 5888888888999999999999887764
No 123
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.72 E-value=1.2e-08 Score=81.41 Aligned_cols=67 Identities=30% Similarity=0.299 Sum_probs=56.6
Q ss_pred CCCCCcEEEccCCcccc--ccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCC--CCCEEEcccccccccCCC
Q 036330 109 PFQELESLDLSYNSFYG--VYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTII--SLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 109 ~l~~L~~L~Ls~N~l~g--~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~--~L~~L~Ls~N~l~G~iP~ 182 (187)
++++|+.|+|++|.|++ .+| ..+..+++|+.|+|++|++++. ..+..+. +|+.|+|++|.+++.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~-----~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~ 238 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMS-----SIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRD 238 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGT-----THHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSS
T ss_pred hCCCCCEEECCCCCCCCCccch-----hHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCc
Confidence 47899999999999998 566 5677899999999999999974 4455555 999999999999998874
No 124
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.70 E-value=3.7e-08 Score=83.81 Aligned_cols=78 Identities=17% Similarity=0.110 Sum_probs=47.0
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcC
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTI 163 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l 163 (187)
+++.|++++|.+++ ++ .+..+++|++|++++|.+++ +| ..+ ++|++|++++|++++ +| .++++
T Consensus 132 ~L~~L~L~~n~l~~----lp--~~~~l~~L~~L~l~~N~l~~-lp-----~~~---~~L~~L~L~~n~l~~-l~-~~~~l 194 (454)
T 1jl5_A 132 LLEYLGVSNNQLEK----LP--ELQNSSFLKIIDVDNNSLKK-LP-----DLP---PSLEFIAAGNNQLEE-LP-ELQNL 194 (454)
T ss_dssp TCCEEECCSSCCSS----CC--CCTTCTTCCEEECCSSCCSC-CC-----CCC---TTCCEEECCSSCCSS-CC-CCTTC
T ss_pred CCCEEECcCCCCCC----Cc--ccCCCCCCCEEECCCCcCcc-cC-----CCc---ccccEEECcCCcCCc-Cc-cccCC
Confidence 34455555554421 21 26667777777777777775 55 222 366666666666665 55 46666
Q ss_pred CCCCEEEcccccccc
Q 036330 164 ISLTNLSLGYCGIEG 178 (187)
Q Consensus 164 ~~L~~L~Ls~N~l~G 178 (187)
++|++|++++|++++
T Consensus 195 ~~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 195 PFLTAIYADNNSLKK 209 (454)
T ss_dssp TTCCEEECCSSCCSS
T ss_pred CCCCEEECCCCcCCc
Confidence 777777777776664
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.70 E-value=3.6e-10 Score=85.49 Aligned_cols=92 Identities=20% Similarity=0.191 Sum_probs=54.1
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCc-----------------cccccCCCCCCCEE
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEG-----------------MYLSIGSLKWLKIL 145 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~-----------------~~~~~~~l~~L~~L 145 (187)
.+++.|++++|.+++ ++ .+..+++|++|++++|.++ .+|... ..+.+..+++|++|
T Consensus 48 ~~L~~L~ls~n~l~~----l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L 120 (198)
T 1ds9_A 48 KACKHLALSTNNIEK----IS--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVL 120 (198)
T ss_dssp TTCSEEECSEEEESC----CC--CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEE
T ss_pred CCCCEEECCCCCCcc----cc--ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEE
Confidence 357778888777732 22 3556666777777777666 455100 00134455566666
Q ss_pred EccCCCCCCCCh--HHhhcCCCCCEEEcccccccccCCC
Q 036330 146 NLYSNNVNNSLL--PSLTTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 146 ~Ls~N~l~G~iP--~~l~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
++++|++++ +| ..+..+++|++|++++|.+++.+|.
T Consensus 121 ~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 121 YMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp EESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred ECCCCcCCc-hhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 666666663 33 3566677777777777777666553
No 126
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.69 E-value=1.3e-09 Score=88.19 Aligned_cols=97 Identities=20% Similarity=0.145 Sum_probs=81.1
Q ss_pred CCCCcceeecCCCCCCEEEEEcCCCCCCCCCCCCCCccCcCC--CCCcEEEccCCccccccCCCccccccCCCCCCCEEE
Q 036330 69 CCRWEQVKCVNATTRRVKELSLDGITLGANSGFLNLSMFLPF--QELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILN 146 (187)
Q Consensus 69 ~C~w~gv~C~~~~~~~v~~L~L~~~~l~~~~~~~~~~~l~~l--~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~ 146 (187)
|..|.++.|+. ..++.++++++.+. + ..+..+ +.++.|++++|.+.+..+ .+..+++|++|+
T Consensus 36 c~~W~~~~~~~---~~~~~l~l~~~~~~---~----~~~~~~~~~~l~~L~l~~n~l~~~~~------~~~~~~~L~~L~ 99 (336)
T 2ast_B 36 CKRWYRLASDE---SLWQTLDLTGKNLH---P----DVTGRLLSQGVIAFRCPRSFMDQPLA------EHFSPFRVQHMD 99 (336)
T ss_dssp CHHHHHHHTCS---TTSSEEECTTCBCC---H----HHHHHHHHTTCSEEECTTCEECSCCC------SCCCCBCCCEEE
T ss_pred HHHHHHHhcCc---hhheeeccccccCC---H----HHHHhhhhccceEEEcCCccccccch------hhccCCCCCEEE
Confidence 44699999875 45789999998872 1 234455 789999999999998766 467899999999
Q ss_pred ccCCCCCCC-ChHHhhcCCCCCEEEcccccccccCC
Q 036330 147 LYSNNVNNS-LLPSLTTIISLTNLSLGYCGIEGFIP 181 (187)
Q Consensus 147 Ls~N~l~G~-iP~~l~~l~~L~~L~Ls~N~l~G~iP 181 (187)
+++|.+++. +|..+..+++|++|++++|.+++.+|
T Consensus 100 L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~ 135 (336)
T 2ast_B 100 LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV 135 (336)
T ss_dssp CTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHH
T ss_pred ccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHH
Confidence 999999876 89999999999999999999987655
No 127
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.67 E-value=5.2e-08 Score=82.67 Aligned_cols=61 Identities=23% Similarity=0.320 Sum_probs=26.9
Q ss_pred CCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccc
Q 036330 109 PFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEG 178 (187)
Q Consensus 109 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G 178 (187)
.+++|+.|++++|.+++. | . +..+++|++|++++|++++..| ++.+++|+.|++++|++++
T Consensus 263 ~l~~L~~L~l~~n~l~~~-~-----~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNI-S-----P-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp TCTTCSEEECCSSCCCCC-G-----G-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC
T ss_pred cCCCCCEEECCCCccCcc-c-----c-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC
Confidence 344444444444444431 1 1 3444444444444444443222 4444444444444444443
No 128
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.66 E-value=7.2e-09 Score=85.77 Aligned_cols=40 Identities=20% Similarity=0.116 Sum_probs=18.3
Q ss_pred CCCCCEEEccCCCCCC----CChHHh-hcCCCCCEEEcccccccc
Q 036330 139 LKWLKILNLYSNNVNN----SLLPSL-TTIISLTNLSLGYCGIEG 178 (187)
Q Consensus 139 l~~L~~L~Ls~N~l~G----~iP~~l-~~l~~L~~L~Ls~N~l~G 178 (187)
+++|++|+|++|++++ .+|..+ .++++|++|++++|.+++
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 4444444444444443 244444 334444444444444443
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.64 E-value=5.4e-09 Score=86.50 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=18.2
Q ss_pred CCCCCCCEEEccCCCCCC----CChHHhhcCCCCCEEEcccccc
Q 036330 137 GSLKWLKILNLYSNNVNN----SLLPSLTTIISLTNLSLGYCGI 176 (187)
Q Consensus 137 ~~l~~L~~L~Ls~N~l~G----~iP~~l~~l~~L~~L~Ls~N~l 176 (187)
..+++|++|+|++|++++ .+|..+..+++|++|+|++|.+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 344444444444444443 2444444444444444444444
No 130
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.63 E-value=1.1e-07 Score=81.02 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=37.4
Q ss_pred CCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccc
Q 036330 109 PFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEG 178 (187)
Q Consensus 109 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G 178 (187)
.+++|+.|++++|.+++. .++.+++|++|++++|++++ +| ++.+++|++|++++|+++|
T Consensus 189 ~l~~L~~L~l~~N~l~~~--------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 189 QNKLLNRLNCDTNNITKL--------DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp TCTTCCEEECCSSCCSCC--------CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred cCCCCCEEECcCCcCCee--------ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 344455555555544431 25666777777777777776 55 6677777777777777775
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.62 E-value=7.8e-10 Score=83.61 Aligned_cols=65 Identities=22% Similarity=0.242 Sum_probs=50.7
Q ss_pred cCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccc
Q 036330 106 MFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEG 178 (187)
Q Consensus 106 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G 178 (187)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|..+..+++|++|++++|++++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~------~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~ 107 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS------SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS 107 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC------CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC
T ss_pred HHhcCCCCCEEECCCCCCcc-cc------ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc
Confidence 47788999999999999986 65 5667777778888777777 577766667777777777777764
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.61 E-value=8.8e-09 Score=84.75 Aligned_cols=86 Identities=21% Similarity=0.215 Sum_probs=56.2
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCC-----CCCcEEEccCCccccccCCCccccc----cCCC-CCCCEEEccCCCCC
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPF-----QELESLDLSYNSFYGVYEKEGMYLS----IGSL-KWLKILNLYSNNVN 153 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l-----~~L~~L~Ls~N~l~g~ip~~~~~~~----~~~l-~~L~~L~Ls~N~l~ 153 (187)
++++|+|++|.+++.+. ..+..+ ++|++|+|++|.+++..+ .. +..+ ++|++|+|++|+++
T Consensus 52 ~L~~L~Ls~N~l~~~~~----~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~-----~~l~~~l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNS----DELVQILAAIPANVTSLNLSGNFLSYKSS-----DELVKTLAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp TCCEEECCSSCGGGSCH----HHHHHHHHTSCTTCCEEECCSSCGGGSCH-----HHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred ceeEEECcCCCCCHHHH----HHHHHHHhccCCCccEEECcCCcCChHHH-----HHHHHHHHhCCCCccEEECcCCcCC
Confidence 67778888877732111 112222 778888888888776554 33 3333 78888888888887
Q ss_pred CCChHHhhc-----CCCCCEEEcccccccc
Q 036330 154 NSLLPSLTT-----IISLTNLSLGYCGIEG 178 (187)
Q Consensus 154 G~iP~~l~~-----l~~L~~L~Ls~N~l~G 178 (187)
+..+..+.. .++|++|+|++|++++
T Consensus 123 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 123 SKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp GSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred cHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 766655443 2588888888888874
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.56 E-value=2.8e-08 Score=87.91 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=20.3
Q ss_pred CCCCCCCCCCCCCCCccee--------ecCCCCCCEEEEEcCCCCCC
Q 036330 58 LTSWVDDEMSDCCRWEQVK--------CVNATTRRVKELSLDGITLG 96 (187)
Q Consensus 58 l~~W~~~~~~~~C~w~gv~--------C~~~~~~~v~~L~L~~~~l~ 96 (187)
...|... .++|.|.|.. |.. ..++.|++++++++
T Consensus 12 w~~W~~~--~~~~~~~~r~~~~~~~~~c~~---~~l~~L~ls~n~L~ 53 (622)
T 3g06_A 12 WSAWRRA--APAEESRGRAAVVQKMRACLN---NGNAVLNVGESGLT 53 (622)
T ss_dssp HHHHHHT--CCGGGHHHHHHHHHHHHHHHH---HCCCEEECCSSCCS
T ss_pred HHHHHhc--CCcchhccccccCcccccccC---CCCcEEEecCCCcC
Confidence 3456554 6788886542 322 34677777777774
No 134
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.45 E-value=1.6e-08 Score=80.67 Aligned_cols=105 Identities=16% Similarity=0.115 Sum_probs=67.0
Q ss_pred CCCCCcceeecCCCCCCEEEEEcCCC---C----CC----------------CCCCCCCCccCcCCCCCcE--EEccCCc
Q 036330 68 DCCRWEQVKCVNATTRRVKELSLDGI---T----LG----------------ANSGFLNLSMFLPFQELES--LDLSYNS 122 (187)
Q Consensus 68 ~~C~w~gv~C~~~~~~~v~~L~L~~~---~----l~----------------~~~~~~~~~~l~~l~~L~~--L~Ls~N~ 122 (187)
..|+|.|+.|+. ...+|+.+...+. . +. .....++.+.+...+.|.. ++++.|.
T Consensus 76 ~l~~~~g~i~~~-~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~ 154 (267)
T 3rw6_A 76 ALKAVNYKILDR-ENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNR 154 (267)
T ss_dssp HHHHTTSSCBCT-TSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTS
T ss_pred HHHhcCcEEECC-CCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHHcCCCcchhhcCccccCCH
Confidence 367899999986 3345655444331 1 10 0000122222333444444 6667773
Q ss_pred ---cccccCCCccccccCCCCCCCEEEccCCCCCC--CChHHhhcCCCCCEEEcccccccc
Q 036330 123 ---FYGVYEKEGMYLSIGSLKWLKILNLYSNNVNN--SLLPSLTTIISLTNLSLGYCGIEG 178 (187)
Q Consensus 123 ---l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G--~iP~~l~~l~~L~~L~Ls~N~l~G 178 (187)
+.+.++ ....++++|+.|+|++|++++ .+|..+..+++|+.|+|++|+|++
T Consensus 155 ~~~~~~~l~-----i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 155 RSCMAATLR-----IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp HHHHHHHHH-----HHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred HHHHHHHHH-----HHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 333222 222468899999999999998 677888999999999999999996
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.44 E-value=1.6e-08 Score=84.98 Aligned_cols=67 Identities=22% Similarity=0.137 Sum_probs=53.1
Q ss_pred cCCCCCcEEEccCCccccccCCCccccccCC-----CCCCCEEEccCCCCCC----CChHHhhcCCCCCEEEcccccccc
Q 036330 108 LPFQELESLDLSYNSFYGVYEKEGMYLSIGS-----LKWLKILNLYSNNVNN----SLLPSLTTIISLTNLSLGYCGIEG 178 (187)
Q Consensus 108 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~-----l~~L~~L~Ls~N~l~G----~iP~~l~~l~~L~~L~Ls~N~l~G 178 (187)
..+++|++|++++|.+++..+ ..+.. .++|++|++++|++++ .+|..+..+++|++|++++|++++
T Consensus 338 ~~~~~L~~L~Ls~n~i~~~~~-----~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 338 AQNRFLLELQISNNRLEDAGV-----RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHCSSCCEEECCSSBCHHHHH-----HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred hhCCCccEEEccCCccccccH-----HHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 345788888888888876544 33322 6789999999999986 788899999999999999999885
Q ss_pred c
Q 036330 179 F 179 (187)
Q Consensus 179 ~ 179 (187)
.
T Consensus 413 ~ 413 (461)
T 1z7x_W 413 A 413 (461)
T ss_dssp H
T ss_pred H
Confidence 4
No 136
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.41 E-value=5.1e-08 Score=80.15 Aligned_cols=94 Identities=20% Similarity=0.190 Sum_probs=65.0
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCC-CCCcEEEccCCccccccCCCccccc----cCC-CCCCCEEEccCCCCCCCC
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPF-QELESLDLSYNSFYGVYEKEGMYLS----IGS-LKWLKILNLYSNNVNNSL 156 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~~----~~~-l~~L~~L~Ls~N~l~G~i 156 (187)
..++.|+|++|.+++.+...-...+..+ ++|++|++++|.+++..+ .. +.. .++|++|+|++|++++.-
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-----~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 154 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS-----SEFKQAFSNLPASITSLNLRGNDLGIKS 154 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH-----HHHHHHHTTSCTTCCEEECTTSCGGGSC
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH-----HHHHHHHHhCCCceeEEEccCCcCCHHH
Confidence 5689999999998422210000113344 789999999999976544 33 333 368999999999998644
Q ss_pred ----hHHhhcCC-CCCEEEcccccccccCC
Q 036330 157 ----LPSLTTII-SLTNLSLGYCGIEGFIP 181 (187)
Q Consensus 157 ----P~~l~~l~-~L~~L~Ls~N~l~G~iP 181 (187)
+..+..++ +|++|+|++|++++..|
T Consensus 155 ~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~ 184 (362)
T 3goz_A 155 SDELIQILAAIPANVNSLNLRGNNLASKNC 184 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCH
T ss_pred HHHHHHHHhcCCccccEeeecCCCCchhhH
Confidence 44456665 99999999999986543
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.26 E-value=7.9e-08 Score=79.88 Aligned_cols=65 Identities=17% Similarity=0.119 Sum_probs=41.6
Q ss_pred CCCCCcEEEccCCccccc----cCCCccccccCCCCCCCEEEccCCCCCC----CChHHhhcCCCCCEEEcccccccc
Q 036330 109 PFQELESLDLSYNSFYGV----YEKEGMYLSIGSLKWLKILNLYSNNVNN----SLLPSLTTIISLTNLSLGYCGIEG 178 (187)
Q Consensus 109 ~l~~L~~L~Ls~N~l~g~----ip~~~~~~~~~~l~~L~~L~Ls~N~l~G----~iP~~l~~l~~L~~L~Ls~N~l~G 178 (187)
..+.|++|||++|.++.. ++ ..+...++|++|+|++|.++. .++..+...++|++|+|++|.|+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~-----~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLA-----AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHH-----HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHH-----HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 455667777777766532 22 345556677777777777764 234445566778888888777763
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.23 E-value=1.7e-07 Score=78.74 Aligned_cols=90 Identities=19% Similarity=0.146 Sum_probs=55.5
Q ss_pred CEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCcccccc-----CCCCCCCEEEccCCCCCCC---
Q 036330 84 RVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSI-----GSLKWLKILNLYSNNVNNS--- 155 (187)
Q Consensus 84 ~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~-----~~l~~L~~L~Ls~N~l~G~--- 155 (187)
+++.|+++++.++..+...-+..+..+++|++|++++|.+++..+ ..+ ...++|++|++++|++++.
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~-----~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL-----QLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH-----HHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHH-----HHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 588888888887321100112336677888888888888765433 222 2245677777777777653
Q ss_pred -ChHHhhcCCCCCEEEcccccccc
Q 036330 156 -LLPSLTTIISLTNLSLGYCGIEG 178 (187)
Q Consensus 156 -iP~~l~~l~~L~~L~Ls~N~l~G 178 (187)
++..+..+++|++|++++|.+++
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHHhhCCCCCEEECcCCCcch
Confidence 35555666777777777776653
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.10 E-value=7.6e-07 Score=73.91 Aligned_cols=64 Identities=19% Similarity=0.232 Sum_probs=44.6
Q ss_pred CCCCcEEEccCCccccc----cCCCccccccCCCCCCCEEEccCCCCCC----CChHHhhcCCCCCEEEcccccccc
Q 036330 110 FQELESLDLSYNSFYGV----YEKEGMYLSIGSLKWLKILNLYSNNVNN----SLLPSLTTIISLTNLSLGYCGIEG 178 (187)
Q Consensus 110 l~~L~~L~Ls~N~l~g~----ip~~~~~~~~~~l~~L~~L~Ls~N~l~G----~iP~~l~~l~~L~~L~Ls~N~l~G 178 (187)
.+.|+.|+|++|.++.. ++ ..+...++|++|+|++|+++. .++..+...++|+.|+|++|.++.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~-----~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLM-----EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHH-----HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred CCccceeeCCCCCCChHHHHHHH-----HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 45677777777777542 22 344667788888888888764 235566777788888888888763
No 140
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.09 E-value=3.6e-06 Score=68.78 Aligned_cols=64 Identities=9% Similarity=0.127 Sum_probs=38.3
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcE-EEccCCccccccCCCccccccCCCCCCCEEEccCCCCCC
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELES-LDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNN 154 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~-L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G 154 (187)
.+++.|+|++|.+. ..++...|.++++++. +.+.+|+++...| ..+..+++|++|++++|++++
T Consensus 54 ~~L~~L~Ls~N~i~---~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~-----~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 54 GDLEKIEISQNDVL---EVIEADVFSNLPKLHEIRIEKANNLLYINP-----EAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp TTCCEEEEECCTTC---CEECTTSBCSCTTCCEEEEEEETTCCEECT-----TSBCCCTTCCEEEEEEECCSS
T ss_pred CCCCEEECcCCCCC---CccChhHhhcchhhhhhhcccCCcccccCc-----hhhhhcccccccccccccccc
Confidence 56889999998872 1222334555555543 4455566664444 456666666666666666654
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.07 E-value=4.9e-06 Score=67.34 Aligned_cols=90 Identities=12% Similarity=0.018 Sum_probs=73.1
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCC-EEEccCCCCCCCChHHhh
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLK-ILNLYSNNVNNSLLPSLT 161 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~-~L~Ls~N~l~G~iP~~l~ 161 (187)
..++.|+|++++++ .++...|..+++|+.|++++| +. .|+. ..|.++++|+ .+++.+ +++..-+..|.
T Consensus 226 ~~L~~l~L~~n~i~----~I~~~aF~~~~~L~~l~l~~n-i~-~I~~----~aF~~~~~L~~~l~l~~-~l~~I~~~aF~ 294 (329)
T 3sb4_A 226 PNLVSLDISKTNAT----TIPDFTFAQKKYLLKIKLPHN-LK-TIGQ----RVFSNCGRLAGTLELPA-SVTAIEFGAFM 294 (329)
T ss_dssp TTCCEEECTTBCCC----EECTTTTTTCTTCCEEECCTT-CC-EECT----TTTTTCTTCCEEEEECT-TCCEECTTTTT
T ss_pred CCCeEEECCCCCcc----eecHhhhhCCCCCCEEECCcc-cc-eehH----HHhhCChhccEEEEEcc-cceEEchhhhh
Confidence 46899999998884 344466889999999999998 65 4653 6789999999 999988 77644457899
Q ss_pred cCCCCCEEEcccccccccCCCCC
Q 036330 162 TIISLTNLSLGYCGIEGFIPNQG 184 (187)
Q Consensus 162 ~l~~L~~L~Ls~N~l~G~iP~~~ 184 (187)
+|++|+.++++.|+++ .|+...
T Consensus 295 ~c~~L~~l~l~~n~i~-~I~~~a 316 (329)
T 3sb4_A 295 GCDNLRYVLATGDKIT-TLGDEL 316 (329)
T ss_dssp TCTTEEEEEECSSCCC-EECTTT
T ss_pred CCccCCEEEeCCCccC-ccchhh
Confidence 9999999999999998 777643
No 142
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.04 E-value=4.9e-07 Score=67.75 Aligned_cols=90 Identities=20% Similarity=0.179 Sum_probs=60.0
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccc----cCCCccccccCCCCCCCEEEc--cCCCCCCC-
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGV----YEKEGMYLSIGSLKWLKILNL--YSNNVNNS- 155 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~----ip~~~~~~~~~~l~~L~~L~L--s~N~l~G~- 155 (187)
..++.|+|++|.+...+...-...+...+.|++|+|++|.+... +. ..+...+.|++|+| ++|.++..
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~-----~~L~~n~~L~~L~L~~~~N~i~~~g 139 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV-----EALQSNTSLIELRIDNQSQPLGNNV 139 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH-----HGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH-----HHHHhCCCceEEEecCCCCCCCHHH
Confidence 46788888888873111100001233456788888888888753 33 45667788999999 77888753
Q ss_pred ---ChHHhhcCCCCCEEEccccccc
Q 036330 156 ---LLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 156 ---iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
+...+...++|++|+|++|.+.
T Consensus 140 ~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 140 EMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445666688999999888875
No 143
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.02 E-value=6.9e-07 Score=66.92 Aligned_cols=92 Identities=16% Similarity=0.112 Sum_probs=67.0
Q ss_pred CCCEEEEEcCCC-CCCCCCCCCCCccCcCCCCCcEEEccCCccccc----cCCCccccccCCCCCCCEEEccCCCCCCC-
Q 036330 82 TRRVKELSLDGI-TLGANSGFLNLSMFLPFQELESLDLSYNSFYGV----YEKEGMYLSIGSLKWLKILNLYSNNVNNS- 155 (187)
Q Consensus 82 ~~~v~~L~L~~~-~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~----ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~- 155 (187)
...+++|+|+++ .+...+...-...+...+.|++|+|++|.+... +. ..+...+.|++|+|++|+++..
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~-----~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA-----EMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH-----HHHHHCSSCCEEECCSSCCCHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH-----HHHHhCCCcCEEECcCCcCCHHH
Confidence 357999999999 883111100012245568999999999998643 22 3455668899999999999753
Q ss_pred ---ChHHhhcCCCCCEEEc--ccccccc
Q 036330 156 ---LLPSLTTIISLTNLSL--GYCGIEG 178 (187)
Q Consensus 156 ---iP~~l~~l~~L~~L~L--s~N~l~G 178 (187)
+...+...++|++|+| ++|.++.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 5566778899999999 8899874
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.82 E-value=7.9e-06 Score=70.63 Aligned_cols=65 Identities=12% Similarity=-0.044 Sum_probs=51.4
Q ss_pred CCCCcEEEccCCcccc-ccCCCccccccCCCCCCCEEEccCCCCCCC-ChHHhhcCCCCCEEEccccccccc
Q 036330 110 FQELESLDLSYNSFYG-VYEKEGMYLSIGSLKWLKILNLYSNNVNNS-LLPSLTTIISLTNLSLGYCGIEGF 179 (187)
Q Consensus 110 l~~L~~L~Ls~N~l~g-~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~-iP~~l~~l~~L~~L~Ls~N~l~G~ 179 (187)
+++|++|++++|.+++ .++ ..+..+++|++|++++|.+++. ++..+..+++|++|++++|++++.
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~-----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLM-----EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHH-----HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CccceEeeccCCCCCHHHHH-----HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 6778888888888876 344 4567889999999999998764 455567899999999999998854
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.57 E-value=3.8e-05 Score=57.32 Aligned_cols=84 Identities=13% Similarity=0.085 Sum_probs=62.0
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCc-cccccCCCccccccCCC----CCCCEEEccCCC-CCCCC
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNS-FYGVYEKEGMYLSIGSL----KWLKILNLYSNN-VNNSL 156 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~-l~g~ip~~~~~~~~~~l----~~L~~L~Ls~N~-l~G~i 156 (187)
-++++||+++..++..+ ...+..+++|+.|+|+++. ++..-- ..+..+ ++|++|+|+++. ++..=
T Consensus 61 ~~L~~LDLs~~~Itd~G----L~~L~~~~~L~~L~L~~C~~ItD~gL-----~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIG----FDHMEGLQYVEKIRLCKCHYIEDGCL-----ERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CCEEEEEEESCCCCGGG----GGGGTTCSCCCEEEEESCTTCCHHHH-----HHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred ceEeEEeCcCCCccHHH----HHHhcCCCCCCEEEeCCCCccCHHHH-----HHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 46999999999884222 2336789999999999984 664322 345554 479999999975 76533
Q ss_pred hHHhhcCCCCCEEEccccc
Q 036330 157 LPSLTTIISLTNLSLGYCG 175 (187)
Q Consensus 157 P~~l~~l~~L~~L~Ls~N~ 175 (187)
-..+.++++|+.|+|++..
T Consensus 132 l~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHGGGCTTCCEEEEESCT
T ss_pred HHHHhcCCCCCEEECCCCC
Confidence 3567889999999998764
No 146
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.49 E-value=3.8e-05 Score=66.34 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=44.3
Q ss_pred CCCCCcEEEccCCccccc----cCCCccccccCCCCCCCEEEccCCCCC----CCChHHhhcCCCCCEEEcccccccc
Q 036330 109 PFQELESLDLSYNSFYGV----YEKEGMYLSIGSLKWLKILNLYSNNVN----NSLLPSLTTIISLTNLSLGYCGIEG 178 (187)
Q Consensus 109 ~l~~L~~L~Ls~N~l~g~----ip~~~~~~~~~~l~~L~~L~Ls~N~l~----G~iP~~l~~l~~L~~L~Ls~N~l~G 178 (187)
.+++|++|+|++|.+++. ++ ..+..+++|++|+++.|.++ +.++..+.++++|+.|++++|.+++
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~-----~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 234 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLH-----ELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE 234 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHH-----HHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG
T ss_pred hCCCCCEEECccccccCcchhHHH-----HHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH
Confidence 467788888888877654 32 33456677778888777776 2345555677778888887777654
No 147
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.36 E-value=0.00039 Score=49.04 Aligned_cols=55 Identities=15% Similarity=0.010 Sum_probs=40.4
Q ss_pred EEEcCCCCCC--CCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCC
Q 036330 87 ELSLDGITLG--ANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVN 153 (187)
Q Consensus 87 ~L~L~~~~l~--~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~ 153 (187)
.++.++++++ .++..+ -++|+.|+|++|.|+ .+|. ..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-------p~~l~~L~Ls~N~l~-~l~~----~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-------PVDTTELVLTGNNLT-ALPP----GLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-------CTTCSEEECTTSCCS-SCCT----TTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC-------CcCCCEEECCCCcCC-ccCh----hhhhhccccCEEEecCCCee
Confidence 6888888883 222211 136899999999998 4552 56788899999999999874
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.27 E-value=5.1e-05 Score=62.74 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=22.0
Q ss_pred CCCCCCEEEccCCCCCCC----ChHHhhcCCCCCEEEccccccc
Q 036330 138 SLKWLKILNLYSNNVNNS----LLPSLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 138 ~l~~L~~L~Ls~N~l~G~----iP~~l~~l~~L~~L~Ls~N~l~ 177 (187)
.+++|++|+|+.|++++. ++..+..+++|+.|+|++|.++
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 355666666666666542 2333344566666666666554
No 149
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.20 E-value=7.7e-05 Score=64.34 Aligned_cols=63 Identities=11% Similarity=0.214 Sum_probs=32.8
Q ss_pred CCCCcEEEccCCccccccCCCcccccc-CCCCCCCEEEccCCCCCCCChH-HhhcCCCCCEEEccccccc
Q 036330 110 FQELESLDLSYNSFYGVYEKEGMYLSI-GSLKWLKILNLYSNNVNNSLLP-SLTTIISLTNLSLGYCGIE 177 (187)
Q Consensus 110 l~~L~~L~Ls~N~l~g~ip~~~~~~~~-~~l~~L~~L~Ls~N~l~G~iP~-~l~~l~~L~~L~Ls~N~l~ 177 (187)
+++|+.|++++|.+++..+ ..+ ..+++|++|+|++|.+++..+. .+..+++|+.|++++|.++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~-----~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGM-----HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp CTTCCEEEEESCCSSHHHH-----HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred chhccEeeccCCCCcHHHH-----HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 4455555555555544332 222 4456666666666666433322 2234566666666666553
No 150
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.13 E-value=0.00013 Score=62.92 Aligned_cols=66 Identities=18% Similarity=0.130 Sum_probs=46.6
Q ss_pred cCCCCCcEEEccCCccccccCCCccccccCC-CCCCCEEEccCCCCCCCChHHh-hcCCCCCEEEccccccccc
Q 036330 108 LPFQELESLDLSYNSFYGVYEKEGMYLSIGS-LKWLKILNLYSNNVNNSLLPSL-TTIISLTNLSLGYCGIEGF 179 (187)
Q Consensus 108 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~-l~~L~~L~Ls~N~l~G~iP~~l-~~l~~L~~L~Ls~N~l~G~ 179 (187)
..+++|+.|++++ .+++..+ ..+.. +++|++|+|++|.+++..+..+ ..+++|+.|+|++|.+++.
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~-----~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVF-----EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHH-----HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred hhCCCccEEeecC-cccHHHH-----HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 3456667777755 4444433 34444 7889999999999877655555 6789999999999988643
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.98 E-value=0.00087 Score=53.92 Aligned_cols=78 Identities=12% Similarity=0.023 Sum_probs=62.2
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCc-EEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhh
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELE-SLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLT 161 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~-~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~ 161 (187)
.++++|+|+.+ ++ .+....|..+++|+ .+++.+ .++ .|+. ..|.++++|+.++++.|+++..-+..|.
T Consensus 250 ~~L~~l~l~~n-i~----~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~----~aF~~c~~L~~l~l~~n~i~~I~~~aF~ 318 (329)
T 3sb4_A 250 KYLLKIKLPHN-LK----TIGQRVFSNCGRLAGTLELPA-SVT-AIEF----GAFMGCDNLRYVLATGDKITTLGDELFG 318 (329)
T ss_dssp TTCCEEECCTT-CC----EECTTTTTTCTTCCEEEEECT-TCC-EECT----TTTTTCTTEEEEEECSSCCCEECTTTTC
T ss_pred CCCCEEECCcc-cc----eehHHHhhCChhccEEEEEcc-cce-EEch----hhhhCCccCCEEEeCCCccCccchhhhc
Confidence 36889999887 63 34446688999999 999998 665 4442 6899999999999999999855555899
Q ss_pred cCCCCCEEEc
Q 036330 162 TIISLTNLSL 171 (187)
Q Consensus 162 ~l~~L~~L~L 171 (187)
++++|+.++.
T Consensus 319 ~~~~L~~ly~ 328 (329)
T 3sb4_A 319 NGVPSKLIYK 328 (329)
T ss_dssp TTCCCCEEEC
T ss_pred CCcchhhhcc
Confidence 9999998863
No 152
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.93 E-value=0.002 Score=45.24 Aligned_cols=55 Identities=16% Similarity=0.030 Sum_probs=28.1
Q ss_pred EEEccCCccc-cccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccc
Q 036330 115 SLDLSYNSFY-GVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGI 176 (187)
Q Consensus 115 ~L~Ls~N~l~-g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l 176 (187)
.++.+++.++ ..+| ..+ .++|++|+|++|+|+..-+..|..+++|+.|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP-----~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLP-----TAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSC-----SCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCC-----CCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555554 2344 222 13456666666666532233455566666666666644
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.32 E-value=0.0079 Score=50.09 Aligned_cols=46 Identities=9% Similarity=0.077 Sum_probs=26.8
Q ss_pred cccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCC
Q 036330 134 LSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 134 ~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
..|.++++|+.++|..| ++-.-+..|.++ +|+.+++.+|.+. .++.
T Consensus 317 ~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~-~l~~ 362 (401)
T 4fdw_A 317 GLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP-QVFE 362 (401)
T ss_dssp TTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC-BCCC
T ss_pred hhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc-cccc
Confidence 34566666777766443 442223456666 7777777777655 3443
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.20 E-value=0.0028 Score=47.12 Aligned_cols=62 Identities=13% Similarity=0.333 Sum_probs=47.3
Q ss_pred CCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCC-CCCCChHHhhcC----CCCCEEEccccc-cc
Q 036330 111 QELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNN-VNNSLLPSLTTI----ISLTNLSLGYCG-IE 177 (187)
Q Consensus 111 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~-l~G~iP~~l~~l----~~L~~L~Ls~N~-l~ 177 (187)
..|+.||++++.++..-- ..+..+++|++|+|+++. ++..--..+..+ ++|++|+|+++. ++
T Consensus 61 ~~L~~LDLs~~~Itd~GL-----~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF-----DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp CCEEEEEEESCCCCGGGG-----GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHHH-----HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 369999999998875433 467899999999999985 665333456664 479999999874 55
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.95 E-value=0.001 Score=50.38 Aligned_cols=93 Identities=10% Similarity=0.119 Sum_probs=43.2
Q ss_pred CCEEEEEcCCCCCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCC---CCCC----C
Q 036330 83 RRVKELSLDGITLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSN---NVNN----S 155 (187)
Q Consensus 83 ~~v~~L~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N---~l~G----~ 155 (187)
..++.|+|++|.+...+...-...+..-+.|+.|+|++|.|...--. .+-..+..-+.|++|+|++| .+.. .
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~-ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA-RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH-HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH-HHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 45666666666662111000001122235667777777766532100 00023344455777777644 2221 1
Q ss_pred ChHHhhcCCCCCEEEcccccc
Q 036330 156 LLPSLTTIISLTNLSLGYCGI 176 (187)
Q Consensus 156 iP~~l~~l~~L~~L~Ls~N~l 176 (187)
|-+.+..-+.|+.|+++.|..
T Consensus 149 ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhCCCcCeEeccCCCc
Confidence 233344456677777766654
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=95.64 E-value=0.0075 Score=49.65 Aligned_cols=70 Identities=13% Similarity=0.087 Sum_probs=44.0
Q ss_pred CCCCCcEEEccC--CccccccCCCcccccc--CCCCCCCEEEccCCCCCCCChHHhh---cCCCCCEEEcccccccc
Q 036330 109 PFQELESLDLSY--NSFYGVYEKEGMYLSI--GSLKWLKILNLYSNNVNNSLLPSLT---TIISLTNLSLGYCGIEG 178 (187)
Q Consensus 109 ~l~~L~~L~Ls~--N~l~g~ip~~~~~~~~--~~l~~L~~L~Ls~N~l~G~iP~~l~---~l~~L~~L~Ls~N~l~G 178 (187)
.+++|+.|+|+. |...|......+-..+ ..+++|++|+|.+|.+.+..+..+. .+++|++|+|+.|.+++
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 567888888753 2221210000000112 3578999999999988765555554 47889999999999875
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.59 E-value=0.021 Score=47.44 Aligned_cols=72 Identities=13% Similarity=0.048 Sum_probs=49.2
Q ss_pred ccCcCCCCCcEEEccCCccc----cccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccC
Q 036330 105 SMFLPFQELESLDLSYNSFY----GVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFI 180 (187)
Q Consensus 105 ~~l~~l~~L~~L~Ls~N~l~----g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~i 180 (187)
..|..+++|+.+++.+|.+. ..++. ..|.++++|+.+++. +.++-.-...|.+|++|+.++|..| ++ .|
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~----~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I 337 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHP----YCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VT-QI 337 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECT----TTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CC-EE
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECH----HHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-cc-EE
Confidence 45777888888888887764 12442 567888889988888 4465322346888889999988654 44 45
Q ss_pred CCC
Q 036330 181 PNQ 183 (187)
Q Consensus 181 P~~ 183 (187)
+..
T Consensus 338 ~~~ 340 (401)
T 4fdw_A 338 NFS 340 (401)
T ss_dssp CTT
T ss_pred cHH
Confidence 443
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.42 E-value=0.011 Score=44.63 Aligned_cols=92 Identities=16% Similarity=0.177 Sum_probs=58.8
Q ss_pred CCCEEEEEcCCC-CCCCCCCCCCCccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCC----C
Q 036330 82 TRRVKELSLDGI-TLGANSGFLNLSMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNS----L 156 (187)
Q Consensus 82 ~~~v~~L~L~~~-~l~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~----i 156 (187)
...+++|+|+++ .+...+...-...+..-+.|+.|+|++|.+...--. .+-..+..-+.|++|+|+.|++... |
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~-alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEAR-GLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHT-THHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHH-HHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 467999999985 772111000011244457899999999999743220 0002334457899999999999753 2
Q ss_pred hHHhhcCCCCCEEEcccc
Q 036330 157 LPSLTTIISLTNLSLGYC 174 (187)
Q Consensus 157 P~~l~~l~~L~~L~Ls~N 174 (187)
-+.+..-+.|+.|+|++|
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 234445578999999865
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.87 E-value=0.36 Score=39.39 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=44.0
Q ss_pred ccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCCh-HHhhcCCCCCEEEcccccc
Q 036330 105 SMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLL-PSLTTIISLTNLSLGYCGI 176 (187)
Q Consensus 105 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~Ls~N~l 176 (187)
..|..+++|+.+++..+ ++ .|.. ..|.++.+|+.+.+..+ ++ .|+ .+|.+|++|+.+++.+|..
T Consensus 305 ~aF~~c~~L~~i~lp~~-v~-~I~~----~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 305 SVFAGCISLKSIDIPEG-IT-QILD----DAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CC-EECT----TTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSCHH
T ss_pred eeecCCCCcCEEEeCCc-cc-EehH----hHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCcee
Confidence 34666777777777654 33 3332 46788888999888654 55 344 4688899999998887643
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=92.46 E-value=0.2 Score=40.93 Aligned_cols=62 Identities=21% Similarity=0.182 Sum_probs=42.9
Q ss_pred ccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCCh-HHhhcCCCCCEEEcccc
Q 036330 105 SMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLL-PSLTTIISLTNLSLGYC 174 (187)
Q Consensus 105 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~Ls~N 174 (187)
..|..+++|+.+++..+ ++ .|+. ..|.++++|+.+++..| ++ .|+ .+|.+|++|+.+++..|
T Consensus 314 ~aF~~c~~L~~i~lp~~-v~-~I~~----~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPYL-VE-EIGK----RSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CC-EECT----TTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGG
T ss_pred hhhcCCCCCCEEEeCCc-cc-EEhH----HhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCC
Confidence 34667778888888654 43 3442 56778888888888766 55 343 46788888888888654
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.34 E-value=0.21 Score=40.46 Aligned_cols=61 Identities=10% Similarity=0.071 Sum_probs=38.7
Q ss_pred cCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCCh-HHhhcCCCCCEEEccc
Q 036330 106 MFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLL-PSLTTIISLTNLSLGY 173 (187)
Q Consensus 106 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~Ls~ 173 (187)
.|..+++|+.+++.++.++ .|+. ..|.++.+|+.++|..+ ++ .|+ .+|.++++|+.+.+..
T Consensus 281 aF~~c~~L~~i~l~~~~i~-~I~~----~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 281 LCSGCSNLTKVVMDNSAIE-TLEP----RVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTTTCTTCCEEEECCTTCC-EECT----TTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccccccccc-eehh----hhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECC
Confidence 3556677777777766665 3432 46777777888877643 44 333 3577777777776643
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=91.25 E-value=0.56 Score=37.82 Aligned_cols=70 Identities=10% Similarity=0.090 Sum_probs=47.2
Q ss_pred cCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCChHHhhcCCCCCEEEcccccccccCCCC
Q 036330 106 MFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLLPSLTTIISLTNLSLGYCGIEGFIPNQ 183 (187)
Q Consensus 106 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~ 183 (187)
.+..+..|+.+++..+ +. .++. ..+.++++|+.+++..+.++-.-...|.++.+|+.+.|..+ ++ .|+..
T Consensus 258 aF~~~~~l~~i~l~~~-i~-~i~~----~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~ 327 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VK-TVPY----LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVY 327 (379)
T ss_dssp TTTTCTTCCEEEECCC-CS-EECT----TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTT
T ss_pred ccceeehhcccccccc-ce-eccc----cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHH
Confidence 3555667777777544 22 2331 46788999999999888887333457889999999998654 43 45443
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=89.68 E-value=0.77 Score=37.40 Aligned_cols=67 Identities=13% Similarity=0.251 Sum_probs=43.8
Q ss_pred cCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCCh-HHhhcCCCCCEEEcccccccccCCC
Q 036330 106 MFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLL-PSLTTIISLTNLSLGYCGIEGFIPN 182 (187)
Q Consensus 106 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~Ls~N~l~G~iP~ 182 (187)
.|.+++.|+.+++.. .++ .|+. ..|.++.+|+.+++..+ ++ .|. .+|.+|++|+.+.+..+ ++ .|+.
T Consensus 283 aF~~c~~L~~i~l~~-~i~-~I~~----~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~-~I~~ 350 (394)
T 4gt6_A 283 AFMNCPALQDIEFSS-RIT-ELPE----SVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VT-KIPE 350 (394)
T ss_dssp TTTTCTTCCEEECCT-TCC-EECT----TTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CC-BCCG
T ss_pred ccccccccccccCCC-ccc-ccCc----eeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cC-EEhH
Confidence 355667777777753 233 3442 46788889999998754 44 343 46888999999988644 44 4543
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=85.47 E-value=1.1 Score=36.37 Aligned_cols=67 Identities=18% Similarity=0.143 Sum_probs=45.0
Q ss_pred CcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccCCCCCCCCh-HHhhcCCCCCEEEcccccccccCCCC
Q 036330 107 FLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYSNNVNNSLL-PSLTTIISLTNLSLGYCGIEGFIPNQ 183 (187)
Q Consensus 107 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~N~l~G~iP-~~l~~l~~L~~L~Ls~N~l~G~iP~~ 183 (187)
+..+.+|+.+.+..+ ++ .|+. ..|.++++|+.+++.++ ++ .|+ .+|.++++|+.+++..| ++ .|+..
T Consensus 293 F~~~~~L~~i~l~~~-i~-~I~~----~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~ 360 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VK-FIGE----EAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LR-KIGAN 360 (394)
T ss_dssp TTTCTTCCEEEECTT-CC-EECT----TTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CC-EECTT
T ss_pred ccccccccccccccc-cc-eech----hhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-cc-EehHH
Confidence 445666777777654 33 2332 46788899999999754 55 343 56888999999998766 54 55543
No 165
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=35.51 E-value=13 Score=17.06 Aligned_cols=10 Identities=20% Similarity=0.966 Sum_probs=7.5
Q ss_pred CCCCCCccee
Q 036330 67 SDCCRWEQVK 76 (187)
Q Consensus 67 ~~~C~w~gv~ 76 (187)
...|+|+|..
T Consensus 5 dgacswrgle 14 (23)
T 3ox7_P 5 DGACSWRGLE 14 (26)
T ss_pred Ccccccccch
Confidence 4579999874
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=28.73 E-value=1.1e+02 Score=19.54 Aligned_cols=39 Identities=15% Similarity=0.043 Sum_probs=24.8
Q ss_pred ccCcCCCCCcEEEccCCccccccCCCccccccCCCCCCCEEEccC
Q 036330 105 SMFLPFQELESLDLSYNSFYGVYEKEGMYLSIGSLKWLKILNLYS 149 (187)
Q Consensus 105 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~l~~L~~L~Ls~ 149 (187)
..|..++.|+.+.+..+- + .|.. ..|.++.+|+.+.+..
T Consensus 14 ~aF~~c~~L~~i~iP~~v-~-~Ig~----~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPNI-G-LLYD----GMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTTTCTTCCCEEECTTS-S-CCCT----TSSTTCTTCCCEEECC
T ss_pred HHhcCCCCCcEEEcCCch-h-eEcH----HHHhccCCccEEEEcC
Confidence 457777788887777652 2 1221 4577777888777654
Done!