Query 036331
Match_columns 147
No_of_seqs 114 out of 1460
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 11:35:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 2.1E-20 4.5E-25 146.8 9.7 136 4-139 139-274 (968)
2 PLN00113 leucine-rich repeat r 99.8 2.7E-20 5.9E-25 146.1 9.8 142 2-143 161-302 (968)
3 KOG0617 Ras suppressor protein 99.7 2.6E-20 5.7E-25 117.0 -3.4 137 2-142 53-190 (264)
4 KOG4194 Membrane glycoprotein 99.7 3.2E-18 6.9E-23 124.4 -0.5 143 3-145 291-436 (873)
5 KOG0617 Ras suppressor protein 99.6 2E-17 4.3E-22 104.1 -1.9 132 3-138 31-163 (264)
6 KOG4194 Membrane glycoprotein 99.6 1.6E-16 3.4E-21 115.7 0.9 121 25-145 265-412 (873)
7 PLN03150 hypothetical protein; 99.5 9.1E-14 2E-18 105.0 8.4 110 31-140 420-530 (623)
8 PLN03150 hypothetical protein; 99.5 2.3E-13 5.1E-18 102.8 7.5 111 6-116 419-530 (623)
9 KOG0444 Cytoskeletal regulator 99.4 9.2E-15 2E-19 107.9 -0.5 133 3-139 101-259 (1255)
10 KOG0444 Cytoskeletal regulator 99.4 2.4E-15 5.3E-20 110.9 -5.0 128 6-137 223-351 (1255)
11 PF14580 LRR_9: Leucine-rich r 99.4 2.2E-13 4.8E-18 87.2 3.7 124 5-133 19-148 (175)
12 KOG0472 Leucine-rich repeat pr 99.4 3E-15 6.6E-20 104.9 -5.5 132 3-140 158-290 (565)
13 KOG0472 Leucine-rich repeat pr 99.4 1.7E-14 3.7E-19 101.2 -2.7 126 11-140 418-543 (565)
14 cd00116 LRR_RI Leucine-rich re 99.3 1.3E-13 2.8E-18 96.3 -0.9 136 4-139 80-235 (319)
15 PF14580 LRR_9: Leucine-rich r 99.3 5.5E-12 1.2E-16 80.8 6.5 111 25-140 15-128 (175)
16 KOG0618 Serine/threonine phosp 99.3 5.7E-14 1.2E-18 106.7 -3.2 128 6-136 360-487 (1081)
17 cd00116 LRR_RI Leucine-rich re 99.3 5.5E-13 1.2E-17 93.1 0.6 136 5-140 137-293 (319)
18 KOG4237 Extracellular matrix p 99.3 1.2E-13 2.6E-18 96.7 -3.5 73 73-145 270-342 (498)
19 KOG0618 Serine/threonine phosp 99.3 8.3E-13 1.8E-17 100.5 0.2 133 2-138 380-513 (1081)
20 PLN03210 Resistant to P. syrin 99.3 5.6E-11 1.2E-15 95.5 10.3 36 101-136 778-813 (1153)
21 KOG1259 Nischarin, modulator o 99.2 6.1E-13 1.3E-17 90.7 -1.2 133 3-141 282-415 (490)
22 PRK15387 E3 ubiquitin-protein 99.2 3.4E-11 7.3E-16 92.3 7.1 105 30-144 343-464 (788)
23 PLN03210 Resistant to P. syrin 99.2 8.1E-11 1.8E-15 94.6 9.4 127 5-136 778-904 (1153)
24 KOG0532 Leucine-rich repeat (L 99.2 1.4E-12 3E-17 95.0 -0.6 134 2-142 118-251 (722)
25 PF13855 LRR_8: Leucine rich r 99.2 1.5E-11 3.2E-16 65.7 3.1 60 78-137 2-61 (61)
26 PF13855 LRR_8: Leucine rich r 99.1 7.1E-11 1.5E-15 63.0 4.3 57 31-87 3-59 (61)
27 PRK15370 E3 ubiquitin-protein 99.1 1.9E-10 4.2E-15 88.3 6.5 121 6-139 242-381 (754)
28 PRK15370 E3 ubiquitin-protein 99.1 2E-10 4.2E-15 88.3 5.8 122 5-139 220-360 (754)
29 KOG4237 Extracellular matrix p 99.0 8.1E-12 1.8E-16 87.6 -3.9 133 7-140 69-203 (498)
30 COG4886 Leucine-rich repeat (L 99.0 2.3E-10 4.9E-15 82.5 2.5 130 6-141 141-293 (394)
31 COG4886 Leucine-rich repeat (L 98.9 3.7E-10 8.1E-15 81.3 1.7 135 3-141 114-271 (394)
32 KOG0532 Leucine-rich repeat (L 98.9 3.4E-10 7.3E-15 82.9 0.3 124 6-135 144-270 (722)
33 PRK15387 E3 ubiquitin-protein 98.8 1.1E-08 2.4E-13 78.8 6.5 109 6-124 343-468 (788)
34 KOG1259 Nischarin, modulator o 98.8 2.7E-09 5.8E-14 73.3 1.2 108 26-139 281-388 (490)
35 KOG1909 Ran GTPase-activating 98.7 2.4E-09 5.2E-14 74.2 0.5 144 2-145 89-261 (382)
36 KOG3207 Beta-tubulin folding c 98.7 1.2E-09 2.7E-14 77.7 -1.2 138 3-140 170-316 (505)
37 KOG1859 Leucine-rich repeat pr 98.7 2.2E-10 4.8E-15 86.1 -6.1 130 5-140 164-294 (1096)
38 KOG4658 Apoptotic ATPase [Sign 98.7 3.2E-08 6.8E-13 77.6 4.7 106 29-135 545-652 (889)
39 KOG4658 Apoptotic ATPase [Sign 98.6 4E-08 8.7E-13 77.0 2.8 107 4-112 544-653 (889)
40 KOG4579 Leucine-rich repeat (L 98.5 1.6E-09 3.4E-14 66.2 -4.1 85 27-114 51-136 (177)
41 KOG1644 U2-associated snRNP A' 98.5 1.8E-07 4E-12 60.7 4.8 106 28-136 41-151 (233)
42 KOG3207 Beta-tubulin folding c 98.5 9.1E-09 2E-13 73.4 -1.3 107 4-111 120-232 (505)
43 KOG0531 Protein phosphatase 1, 98.5 1.3E-08 2.9E-13 73.9 -0.7 127 7-140 74-201 (414)
44 KOG0531 Protein phosphatase 1, 98.4 5.4E-08 1.2E-12 70.8 0.7 108 2-115 92-200 (414)
45 PF12799 LRR_4: Leucine Rich r 98.4 3.6E-07 7.8E-12 45.2 3.2 38 102-140 2-39 (44)
46 KOG4579 Leucine-rich repeat (L 98.3 1.5E-08 3.3E-13 62.0 -3.9 81 54-137 54-135 (177)
47 PF12799 LRR_4: Leucine Rich r 98.3 1.6E-06 3.5E-11 42.9 3.4 36 78-114 2-37 (44)
48 KOG3665 ZYG-1-like serine/thre 98.2 2.1E-07 4.6E-12 71.3 -0.2 135 5-141 122-266 (699)
49 KOG1859 Leucine-rich repeat pr 98.2 2.2E-08 4.9E-13 75.7 -5.4 107 28-140 163-269 (1096)
50 COG5238 RNA1 Ran GTPase-activa 98.2 1.3E-06 2.7E-11 59.6 3.1 142 2-144 89-261 (388)
51 KOG1909 Ran GTPase-activating 98.2 1.6E-07 3.4E-12 65.4 -1.5 133 5-137 157-310 (382)
52 KOG2739 Leucine-rich acidic nu 98.0 4E-06 8.8E-11 56.4 3.0 110 21-133 35-151 (260)
53 KOG1644 U2-associated snRNP A' 98.0 1.2E-05 2.6E-10 52.5 4.7 102 6-110 43-149 (233)
54 PF13306 LRR_5: Leucine rich r 97.9 6.9E-05 1.5E-09 45.5 7.0 120 2-127 9-128 (129)
55 PRK15386 type III secretion pr 97.9 4.8E-05 1E-09 55.1 6.8 117 3-135 50-187 (426)
56 KOG3665 ZYG-1-like serine/thre 97.8 6.2E-06 1.3E-10 63.5 0.5 109 28-138 121-233 (699)
57 KOG2120 SCF ubiquitin ligase, 97.7 4.6E-07 9.9E-12 62.3 -5.4 135 2-136 207-349 (419)
58 COG5238 RNA1 Ran GTPase-activa 97.6 4.9E-05 1.1E-09 52.0 2.4 111 4-114 29-170 (388)
59 KOG2739 Leucine-rich acidic nu 97.6 6E-05 1.3E-09 50.8 2.6 100 5-108 43-150 (260)
60 KOG2982 Uncharacterized conser 97.5 7E-05 1.5E-09 51.9 2.2 39 103-141 226-265 (418)
61 KOG2123 Uncharacterized conser 97.4 2.5E-06 5.4E-11 58.3 -5.9 98 5-107 19-123 (388)
62 PF13306 LRR_5: Leucine rich r 97.4 0.0018 4E-08 39.1 7.2 106 24-134 7-112 (129)
63 KOG2123 Uncharacterized conser 97.3 7.1E-06 1.5E-10 56.2 -4.0 100 27-131 17-123 (388)
64 PRK15386 type III secretion pr 97.3 0.00078 1.7E-08 49.0 5.8 102 25-138 48-169 (426)
65 KOG2982 Uncharacterized conser 97.2 5.8E-05 1.2E-09 52.3 -0.8 84 4-88 70-157 (418)
66 PF00560 LRR_1: Leucine Rich R 96.4 0.0024 5.2E-08 26.4 1.5 12 103-114 2-13 (22)
67 KOG2120 SCF ubiquitin ligase, 96.0 0.00026 5.7E-09 49.2 -4.0 87 54-140 186-275 (419)
68 PF13516 LRR_6: Leucine Rich r 95.0 0.0057 1.2E-07 25.7 -0.1 20 125-144 2-21 (24)
69 smart00370 LRR Leucine-rich re 94.4 0.028 6E-07 24.0 1.3 21 125-145 2-22 (26)
70 smart00369 LRR_TYP Leucine-ric 94.4 0.028 6E-07 24.0 1.3 21 125-145 2-22 (26)
71 KOG3864 Uncharacterized conser 92.7 0.024 5.2E-07 37.4 -0.6 83 30-112 102-187 (221)
72 KOG1947 Leucine rich repeat pr 92.1 0.084 1.8E-06 39.0 1.5 13 123-135 293-305 (482)
73 KOG1947 Leucine rich repeat pr 91.7 0.029 6.3E-07 41.4 -1.2 130 4-133 187-329 (482)
74 KOG0473 Leucine-rich repeat pr 91.5 0.0024 5.1E-08 43.1 -6.3 86 26-114 39-124 (326)
75 smart00368 LRR_RI Leucine rich 90.7 0.094 2E-06 22.9 0.4 17 125-141 2-18 (28)
76 smart00365 LRR_SD22 Leucine-ri 89.6 0.26 5.5E-06 21.2 1.3 16 125-140 2-17 (26)
77 KOG4308 LRR-containing protein 89.0 0.0024 5.1E-08 47.6 -8.8 40 101-140 262-305 (478)
78 KOG0473 Leucine-rich repeat pr 88.6 0.0036 7.7E-08 42.3 -7.3 83 4-89 41-123 (326)
79 KOG3864 Uncharacterized conser 88.5 0.09 1.9E-06 34.8 -0.8 83 52-134 100-185 (221)
80 KOG3763 mRNA export factor TAP 82.0 0.88 1.9E-05 34.7 1.6 63 52-116 217-285 (585)
81 KOG4341 F-box protein containi 81.2 0.79 1.7E-05 33.9 1.1 109 27-135 318-436 (483)
82 smart00364 LRR_BAC Leucine-ric 78.1 1.7 3.8E-05 18.6 1.2 12 55-66 4-15 (26)
83 KOG3763 mRNA export factor TAP 72.5 2.8 6.1E-05 32.1 1.9 63 75-139 216-284 (585)
84 KOG4341 F-box protein containi 67.9 5.4 0.00012 29.7 2.5 127 3-129 318-456 (483)
85 smart00367 LRR_CC Leucine-rich 65.4 3.6 7.9E-05 17.2 0.8 17 124-140 1-18 (26)
86 TIGR00864 PCC polycystin catio 47.1 14 0.00031 34.1 2.0 32 59-90 1-32 (2740)
87 TIGR00864 PCC polycystin catio 36.8 21 0.00046 33.2 1.5 33 35-67 1-33 (2740)
88 smart00446 LRRcap occurring C- 30.4 31 0.00068 14.8 0.8 15 120-134 8-22 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=2.1e-20 Score=146.77 Aligned_cols=136 Identities=40% Similarity=0.446 Sum_probs=61.9
Q ss_pred CCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEE
Q 036331 4 LKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLS 83 (147)
Q Consensus 4 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~ 83 (147)
+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|+++++++|.+.+..|..+..+.+|++++
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 34445555555544444444444444455555544444444444444444444444444444444444444444444444
Q ss_pred ccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccc
Q 036331 84 LFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSV 139 (147)
Q Consensus 84 l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~ 139 (147)
+++|.+.+.+|..++.+++|++|++.+|.+.+.+|..+..+++|++|++++|.+.+
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence 44444444444444444444444444444444444444444444444444444433
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=2.7e-20 Score=146.10 Aligned_cols=142 Identities=38% Similarity=0.487 Sum_probs=102.0
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
+++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|+++++++|.+.+..|..+..+++|++
T Consensus 161 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 240 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240 (968)
T ss_pred hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCE
Confidence 35667777777777776667767777777777777777776666777777777777777777777666777777777777
Q ss_pred EEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccccccc
Q 036331 82 LSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLAT 143 (147)
Q Consensus 82 l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~ 143 (147)
+++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+..|.
T Consensus 241 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 302 (968)
T PLN00113 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302 (968)
T ss_pred EECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh
Confidence 77777777667777777777777777777777777777777777777777777777665544
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=2.6e-20 Score=116.97 Aligned_cols=137 Identities=28% Similarity=0.375 Sum_probs=99.8
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccc-cCCCCCCCCCCCc
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNG-VIPPSIGNLSSLR 80 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~~l~~L~ 80 (147)
+.+.+|++++++.|++. .+|..+..+++|+.+++..|++. ..|..|+.++.|+++++++|++.. .+|+.|..+..|+
T Consensus 53 a~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlr 130 (264)
T KOG0617|consen 53 AELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLR 130 (264)
T ss_pred HHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHH
Confidence 34556666666666665 56666666666666666666666 666666666666666666666642 4566666666666
Q ss_pred EEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccccc
Q 036331 81 NLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLA 142 (147)
Q Consensus 81 ~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~ 142 (147)
-++++.|.+ ..+|+.++.+++|+.+.+.+|.+. ..|..++.+..|+++.+++|+++...|
T Consensus 131 alyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlpp 190 (264)
T KOG0617|consen 131 ALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPP 190 (264)
T ss_pred HHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecCh
Confidence 666666666 678888999999999999999887 568899999999999999999987654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.68 E-value=3.2e-18 Score=124.35 Aligned_cols=143 Identities=26% Similarity=0.186 Sum_probs=107.6
Q ss_pred CCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEE
Q 036331 3 NLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNL 82 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l 82 (147)
+++.|+.|++++|.+....++.+...++|+.|+++.|+++..-++.+..+..|+.++++.|.++......|.++++|+.|
T Consensus 291 gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~L 370 (873)
T KOG4194|consen 291 GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKL 370 (873)
T ss_pred ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhh
Confidence 56667777777777776666667777777777777777775556677777777777777777775555667777788888
Q ss_pred EccCCccccCch---HHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccccccccc
Q 036331 83 SLFNNGLYSSIP---EEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLATAL 145 (147)
Q Consensus 83 ~l~~n~l~~~~~---~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 145 (147)
++.+|.+.+.+- ..+..+++|+.|++.+|.+....-.+|.+++.|++||+.+|.|..+.+.||
T Consensus 371 dLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF 436 (873)
T KOG4194|consen 371 DLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAF 436 (873)
T ss_pred cCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccc
Confidence 888887754332 345668888888888888886666789999999999999999999988887
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=2e-17 Score=104.11 Aligned_cols=132 Identities=24% Similarity=0.382 Sum_probs=120.3
Q ss_pred CCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEE
Q 036331 3 NLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNL 82 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l 82 (147)
++++++.+.+++|+++ .+|+.+.++.+|+.+++.+|.+. ..|.++..++.|+.++++-|++. .+|..|+.++-|+++
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 4667788899999998 78999999999999999999999 88999999999999999999998 799999999999999
Q ss_pred EccCCccc-cCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccc
Q 036331 83 SLFNNGLY-SSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVS 138 (147)
Q Consensus 83 ~l~~n~l~-~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~ 138 (147)
++.+|.+. ..+|..+..+..|+.+.+++|.+- .+|.-++++.+|+.+.+..|.+-
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh
Confidence 99999886 567888999999999999999987 66788999999999999998764
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.60 E-value=1.6e-16 Score=115.69 Aligned_cols=121 Identities=21% Similarity=0.134 Sum_probs=55.6
Q ss_pred CCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchH---------
Q 036331 25 FGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPE--------- 95 (147)
Q Consensus 25 ~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~--------- 95 (147)
|..+.+++++++..|++...-.+.+..++.|+.+++++|.|+...++++.-.++|++|++++|.++...+.
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le 344 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLE 344 (873)
T ss_pred eeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhh
Confidence 33444444444444444433333444444444444444444444444444444444444444444332222
Q ss_pred ---------------HhhcCCcccEEEccCceeeecc---hHhhhhcccCcEEEeecCcccccccccc
Q 036331 96 ---------------EIGYLMSVSELELCTIILVGLF---LIQLVALHLCLHLRLHRWTVSVLLATAL 145 (147)
Q Consensus 96 ---------------~~~~~~~L~~l~l~~n~~~~~~---~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 145 (147)
.+..+.+|+.||+++|.++..+ ...|.++++|+.|++.+|++-.+...||
T Consensus 345 ~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAf 412 (873)
T KOG4194|consen 345 ELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAF 412 (873)
T ss_pred hhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhh
Confidence 3344455555555555544332 2244455555555555555555554444
No 7
>PLN03150 hypothetical protein; Provisional
Probab=99.50 E-value=9.1e-14 Score=104.95 Aligned_cols=110 Identities=28% Similarity=0.324 Sum_probs=91.7
Q ss_pred ccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCcccEEEccC
Q 036331 31 LTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSELELCT 110 (147)
Q Consensus 31 L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~ 110 (147)
++.+++++|.+.+..|..+..+++|+.+++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67788888888888888888888899999988888888888888888899999999888888888888888899999988
Q ss_pred ceeeecchHhhhhc-ccCcEEEeecCccccc
Q 036331 111 IILVGLFLIQLVAL-HLCLHLRLHRWTVSVL 140 (147)
Q Consensus 111 n~~~~~~~~~~~~l-~~L~~l~l~~n~i~~~ 140 (147)
|.+.+.+|..+... .++..+++.+|...+.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccC
Confidence 88888888877653 4567788888765443
No 8
>PLN03150 hypothetical protein; Provisional
Probab=99.45 E-value=2.3e-13 Score=102.76 Aligned_cols=111 Identities=33% Similarity=0.472 Sum_probs=100.8
Q ss_pred cccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEcc
Q 036331 6 SLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLF 85 (147)
Q Consensus 6 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~ 85 (147)
.++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.+++++|.+++..|..+..+++|++++++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCchHHhhcC-CcccEEEccCceeeec
Q 036331 86 NNGLYSSIPEEIGYL-MSVSELELCTIILVGL 116 (147)
Q Consensus 86 ~n~l~~~~~~~~~~~-~~L~~l~l~~n~~~~~ 116 (147)
+|.+.+.+|..+... .++..+++.+|.....
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccC
Confidence 999999999988753 5677888888865543
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.45 E-value=9.2e-15 Score=107.89 Aligned_cols=133 Identities=31% Similarity=0.395 Sum_probs=87.4
Q ss_pred CCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCC-cccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 3 NLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIP-PILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
++..|+++++++|++. +.|..+...+++-.|+++.|.+. .+| +.+.+++-|-++++++|++. .+|+....+..|++
T Consensus 101 ~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQT 177 (1255)
T ss_pred ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhh
Confidence 3555667777777766 66666666667777777777666 333 34445666666667666666 45666666666666
Q ss_pred EEccCCccc-------------------------cCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCc
Q 036331 82 LSLFNNGLY-------------------------SSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWT 136 (147)
Q Consensus 82 l~l~~n~l~-------------------------~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~ 136 (147)
+.+++|.+. ..+|..+..+.+|..+|++.|.+. .+|+.+-.+++|+.|++++|.
T Consensus 178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCc
Confidence 666666431 245556666677777777777766 567777778888888888887
Q ss_pred ccc
Q 036331 137 VSV 139 (147)
Q Consensus 137 i~~ 139 (147)
|+.
T Consensus 257 ite 259 (1255)
T KOG0444|consen 257 ITE 259 (1255)
T ss_pred eee
Confidence 764
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.42 E-value=2.4e-15 Score=110.87 Aligned_cols=128 Identities=29% Similarity=0.350 Sum_probs=62.7
Q ss_pred cccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEcc
Q 036331 6 SLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLF 85 (147)
Q Consensus 6 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~ 85 (147)
+|..++++.|.+. ..|+.+.++++|+.|++++|.++ .+.-....+.++++++++.|+++ .+|..+..+++|+.+++.
T Consensus 223 NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n 299 (1255)
T KOG0444|consen 223 NLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYAN 299 (1255)
T ss_pred hhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhc
Confidence 3444444444443 34444444444444444444444 33333333444444444444444 344444445555555555
Q ss_pred CCccc-cCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcc
Q 036331 86 NNGLY-SSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTV 137 (147)
Q Consensus 86 ~n~l~-~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i 137 (147)
+|+++ ..+|..++.+..|+.+...+|.+- .+|+.++.|+.|+.|.++.|.+
T Consensus 300 ~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 300 NNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred cCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence 55443 344555555555555555544433 4566666677777776666654
No 11
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.40 E-value=2.2e-13 Score=87.19 Aligned_cols=124 Identities=27% Similarity=0.274 Sum_probs=46.1
Q ss_pred CcccEEEccCCcccccCCccCC-CCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCC-CCCCCCcEE
Q 036331 5 KSLLQLDLSENQLSGSIPLSFG-NLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSI-GNLSSLRNL 82 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~-~~l~~L~~l 82 (147)
..+++|++++|.+. .+. .+. .+.+|+.|++++|.++ .+. .+..++.|+.+++++|.++. ..+.+ ..+++|+++
T Consensus 19 ~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 19 VKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQEL 93 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred cccccccccccccc-ccc-chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCEE
Confidence 45777888888876 232 343 4677888888888887 333 46677888888888888874 33333 347788888
Q ss_pred EccCCccccCc-hHHhhcCCcccEEEccCceeeecc---hHhhhhcccCcEEEee
Q 036331 83 SLFNNGLYSSI-PEEIGYLMSVSELELCTIILVGLF---LIQLVALHLCLHLRLH 133 (147)
Q Consensus 83 ~l~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~---~~~~~~l~~L~~l~l~ 133 (147)
++++|.+...- -..+..+++|+.|++.+|++.... ...+..+|+|+.||-.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 88888875311 134667788888888888877432 2366778888877654
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.40 E-value=3e-15 Score=104.89 Aligned_cols=132 Identities=30% Similarity=0.344 Sum_probs=110.9
Q ss_pred CCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEE
Q 036331 3 NLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNL 82 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l 82 (147)
.+.++..+++.+|++. ..|+..-+++.|+.++...|-+. .+|..++.+.+|+.+++..|++. .+| .|.++..|.++
T Consensus 158 ~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~El 233 (565)
T KOG0472|consen 158 NLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKEL 233 (565)
T ss_pred HHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHH
Confidence 3455667777888877 56665555888888998888887 88999999999999999999998 566 78899999999
Q ss_pred EccCCccccCchHHhh-cCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccc
Q 036331 83 SLFNNGLYSSIPEEIG-YLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVL 140 (147)
Q Consensus 83 ~l~~n~l~~~~~~~~~-~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~ 140 (147)
.++.|.+ ..+|.... +++++..+|+.+|.+. .+|..++-+++|.++|++.|.|++-
T Consensus 234 h~g~N~i-~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~L 290 (565)
T KOG0472|consen 234 HVGENQI-EMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSL 290 (565)
T ss_pred HhcccHH-HhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccC
Confidence 9999998 67777655 8999999999999988 5678899999999999999999875
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.38 E-value=1.7e-14 Score=101.19 Aligned_cols=126 Identities=27% Similarity=0.320 Sum_probs=82.8
Q ss_pred EccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccc
Q 036331 11 DLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLY 90 (147)
Q Consensus 11 ~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~ 90 (147)
.++.|.+. ..|..+..++++..+++++|.+. .+|..++.+..||.++++.|.+. ..|.-...+..++.+-.++|.+.
T Consensus 418 ~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~ 494 (565)
T KOG0472|consen 418 VLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIG 494 (565)
T ss_pred HhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccc
Confidence 34444443 55556667777777777777776 66777777777777777777665 45655555555666666667764
Q ss_pred cCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccc
Q 036331 91 SSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVL 140 (147)
Q Consensus 91 ~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~ 140 (147)
...|..+.++.+|..||+.+|.+- .+|+.++.|.+|++|++.+|+|..+
T Consensus 495 ~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr~P 543 (565)
T KOG0472|consen 495 SVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFRQP 543 (565)
T ss_pred ccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccCCC
Confidence 444445677777777777777665 5566777777777777777777644
No 14
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.33 E-value=1.3e-13 Score=96.34 Aligned_cols=136 Identities=26% Similarity=0.230 Sum_probs=56.7
Q ss_pred CCcccEEEccCCcccccCCccCCCC---CCccEEecccccccc----CCCcccCCC-CCCCEEEcccCccccc----CCC
Q 036331 4 LKSLLQLDLSENQLSGSIPLSFGNL---SSLTMKSPFSNSLSG----SIPPILGNL-KSLSTLRLHVNQLNGV----IPP 71 (147)
Q Consensus 4 l~~L~~l~l~~~~~~~~~~~~~~~~---~~L~~l~l~~~~~~~----~~~~~~~~l-~~L~~l~l~~n~~~~~----~~~ 71 (147)
+++|+.+++++|.+....+..+..+ ++|+.+++++|.+.. .....+..+ +.|+.+++++|.+++. .+.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 4455555555555543222222222 225555555554441 111222333 4555555555554421 112
Q ss_pred CCCCCCCCcEEEccCCccccC----chHHhhcCCcccEEEccCceeeec----chHhhhhcccCcEEEeecCcccc
Q 036331 72 SIGNLSSLRNLSLFNNGLYSS----IPEEIGYLMSVSELELCTIILVGL----FLIQLVALHLCLHLRLHRWTVSV 139 (147)
Q Consensus 72 ~~~~l~~L~~l~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~l~l~~n~i~~ 139 (147)
.+..+.+++++++++|.+.+. ++..+...++|+++++++|.+.+. +...+..+++|++|++++|.+++
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 233334455555555544321 112223334555555555544422 12233334445555555555443
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.32 E-value=5.5e-12 Score=80.80 Aligned_cols=111 Identities=30% Similarity=0.304 Sum_probs=44.6
Q ss_pred CCCCCCccEEeccccccccCCCcccC-CCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHh-hcCCc
Q 036331 25 FGNLSSLTMKSPFSNSLSGSIPPILG-NLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEI-GYLMS 102 (147)
Q Consensus 25 ~~~~~~L~~l~l~~~~~~~~~~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~-~~~~~ 102 (147)
+.+..+++.|++.+|.++ .+ ..++ .+.+|+.+++++|.++. + +.+..++.|+++++++|.+.. +...+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred cccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 445667899999999998 33 3455 57899999999999984 3 457789999999999999954 54444 46899
Q ss_pred ccEEEccCceeeecc-hHhhhhcccCcEEEeecCccccc
Q 036331 103 VSELELCTIILVGLF-LIQLVALHLCLHLRLHRWTVSVL 140 (147)
Q Consensus 103 L~~l~l~~n~~~~~~-~~~~~~l~~L~~l~l~~n~i~~~ 140 (147)
|++|++++|.+...- -..+..+++|+.|++.+|+++..
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 999999999998532 24678899999999999999764
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.32 E-value=5.7e-14 Score=106.67 Aligned_cols=128 Identities=27% Similarity=0.276 Sum_probs=65.0
Q ss_pred cccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEcc
Q 036331 6 SLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLF 85 (147)
Q Consensus 6 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~ 85 (147)
.|+.|.+.+|.+++..-+.+.++++|+.|.++.|++...-...+.++..|+.+++++|+++ .+|..+..++.|+++...
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ah 438 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAH 438 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhc
Confidence 3445555555555444444555555555555555555222234445555555555555555 445555555555555555
Q ss_pred CCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCc
Q 036331 86 NNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWT 136 (147)
Q Consensus 86 ~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~ 136 (147)
+|.+ ..+| .+..++.|+.+|++.|.+....-..-...++|++||+++|.
T Consensus 439 sN~l-~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 439 SNQL-LSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred CCce-eech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 5555 3344 45555555555555555553322222223555555555553
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.29 E-value=5.5e-13 Score=93.13 Aligned_cols=136 Identities=21% Similarity=0.181 Sum_probs=65.2
Q ss_pred CcccEEEccCCccccc----CCccCCCCCCccEEeccccccccC----CCcccCCCCCCCEEEcccCccccc----CCCC
Q 036331 5 KSLLQLDLSENQLSGS----IPLSFGNLSSLTMKSPFSNSLSGS----IPPILGNLKSLSTLRLHVNQLNGV----IPPS 72 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~----~~~~~~~l~~L~~l~l~~n~~~~~----~~~~ 72 (147)
++|+.+++++|.+++. +...+..+++|+.+++++|.+.+. ++..+...+.|+.+++++|.+.+. +...
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 4455555555554421 122233444555555555555421 122233344566666666555421 1223
Q ss_pred CCCCCCCcEEEccCCccccCchHHhhc-----CCcccEEEccCceeee----cchHhhhhcccCcEEEeecCccccc
Q 036331 73 IGNLSSLRNLSLFNNGLYSSIPEEIGY-----LMSVSELELCTIILVG----LFLIQLVALHLCLHLRLHRWTVSVL 140 (147)
Q Consensus 73 ~~~l~~L~~l~l~~n~l~~~~~~~~~~-----~~~L~~l~l~~n~~~~----~~~~~~~~l~~L~~l~l~~n~i~~~ 140 (147)
+..+++|+++++++|.+.+.....+.. .+.|+++++.+|.++. .+...+..+++|+++++++|.+...
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 344555666666666554322222211 2456666666665542 1223444455666666666666544
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.27 E-value=1.2e-13 Score=96.67 Aligned_cols=73 Identities=21% Similarity=0.084 Sum_probs=58.4
Q ss_pred CCCCCCCcEEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccccccccc
Q 036331 73 IGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLATAL 145 (147)
Q Consensus 73 ~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 145 (147)
|..+++|+.+++++|.++..-+.+|.+...+++|.+.+|.+...-..+|.++..|++|++++|+|+..-+.||
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF 342 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF 342 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccc
Confidence 4567778888888888876666777778888888888887776656688888999999999999998888876
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.26 E-value=8.3e-13 Score=100.52 Aligned_cols=133 Identities=29% Similarity=0.276 Sum_probs=110.9
Q ss_pred CCCCcccEEEccCCcccccCCcc-CCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCc
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLS-FGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLR 80 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~ 80 (147)
.++.+|++|++++|++. .+|.. +.++..|+.|+++||+++ .+|..+..++.|+++...+|++. .+| .+..++.|+
T Consensus 380 ~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~ 455 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLK 455 (1081)
T ss_pred ccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcce
Confidence 46789999999999998 67764 789999999999999999 88999999999999999999998 677 788999999
Q ss_pred EEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccc
Q 036331 81 NLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVS 138 (147)
Q Consensus 81 ~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~ 138 (147)
++|++.|.+....-..-...++|+.||+++|......-..+..+.++...++.-+...
T Consensus 456 ~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~~~~ 513 (1081)
T KOG0618|consen 456 VLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLNNTP 513 (1081)
T ss_pred EEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccCCCC
Confidence 9999999986433333333489999999999865555567778888888888777443
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.25 E-value=5.6e-11 Score=95.47 Aligned_cols=36 Identities=22% Similarity=0.166 Sum_probs=22.0
Q ss_pred CcccEEEccCceeeecchHhhhhcccCcEEEeecCc
Q 036331 101 MSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWT 136 (147)
Q Consensus 101 ~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~ 136 (147)
++|+.|++.+|.....+|.++..+++|++|++++|.
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence 345555555555555566666667777777776654
No 21
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.24 E-value=6.1e-13 Score=90.73 Aligned_cols=133 Identities=23% Similarity=0.165 Sum_probs=109.6
Q ss_pred CCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEE
Q 036331 3 NLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNL 82 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l 82 (147)
.|..|+++++++|.++ .+.+.+.-.|.++.++++.|.+. .+ +.+..+++|+.+++++|.++ .+.++-..+.+++.+
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 3567899999999988 78888888899999999999998 33 44888999999999999998 566777788999999
Q ss_pred EccCCccccCchHHhhcCCcccEEEccCceeeecch-HhhhhcccCcEEEeecCcccccc
Q 036331 83 SLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFL-IQLVALHLCLHLRLHRWTVSVLL 141 (147)
Q Consensus 83 ~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~l~~L~~l~l~~n~i~~~~ 141 (147)
.++.|.+- . -..++.+-+|..||+.+|.+-.... ..++++|.|.++.+.+|++.+..
T Consensus 358 ~La~N~iE-~-LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 358 KLAQNKIE-T-LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred ehhhhhHh-h-hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 99999872 2 3456778889999999998764321 47889999999999999998764
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.22 E-value=3.4e-11 Score=92.34 Aligned_cols=105 Identities=24% Similarity=0.202 Sum_probs=71.1
Q ss_pred CccEEeccccccccCCCcccCC-----------------CCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccC
Q 036331 30 SLTMKSPFSNSLSGSIPPILGN-----------------LKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSS 92 (147)
Q Consensus 30 ~L~~l~l~~~~~~~~~~~~~~~-----------------l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~ 92 (147)
+|+.|++++|.++ .+|..... ..+|+.+++++|.+. ..|.. .++|+.+++++|.+. .
T Consensus 343 ~Lq~LdLS~N~Ls-~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-s 416 (788)
T PRK15387 343 GLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-S 416 (788)
T ss_pred ccceEecCCCccC-CCCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-C
Confidence 5677777777666 33321111 134666677777666 34432 246777888888774 4
Q ss_pred chHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccccccc
Q 036331 93 IPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLATA 144 (147)
Q Consensus 93 ~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~ 144 (147)
+|.. ..+|+.|++++|.++ .+|..+..+++|..+++++|++++..+.+
T Consensus 417 IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~ 464 (788)
T PRK15387 417 LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 464 (788)
T ss_pred CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHH
Confidence 5643 245777888888887 56888999999999999999999876554
No 23
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.21 E-value=8.1e-11 Score=94.55 Aligned_cols=127 Identities=20% Similarity=0.170 Sum_probs=97.6
Q ss_pred CcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEc
Q 036331 5 KSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSL 84 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l 84 (147)
++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..+ .+++|+.+++++|......|.. ..+++++++
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L 853 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNL 853 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeEC
Confidence 467888888887666788888888999999998876444666655 6788899998887654344443 357889999
Q ss_pred cCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCc
Q 036331 85 FNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWT 136 (147)
Q Consensus 85 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~ 136 (147)
++|.+ ..+|..+..+++|+.|++.+|+-...+|..+..+++|+.+++++|.
T Consensus 854 s~n~i-~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 854 SRTGI-EEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCC-ccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 99988 5778888899999999998865444566777788888888888764
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.21 E-value=1.4e-12 Score=95.03 Aligned_cols=134 Identities=30% Similarity=0.427 Sum_probs=96.4
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
+++..|++++++.|++. ..|..++.+ -|+.+.+++|++. ..|..++....|..++.+.|.+. .+|..++.+.+|+.
T Consensus 118 ~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~ 193 (722)
T KOG0532|consen 118 CNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRD 193 (722)
T ss_pred hhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHH
Confidence 34556777777777776 566655543 3666777777776 66777776677777777777777 46666777777777
Q ss_pred EEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccccc
Q 036331 82 LSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLA 142 (147)
Q Consensus 82 l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~ 142 (147)
+.+.+|.+ ..+|+.+..++ |..||++.|+++ .+|-.|.+|+.|++|.+..|++..+.|
T Consensus 194 l~vrRn~l-~~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 194 LNVRRNHL-EDLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred HHHhhhhh-hhCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChH
Confidence 77777776 56677666444 778888888887 567788888888888888888877654
No 25
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.20 E-value=1.5e-11 Score=65.67 Aligned_cols=60 Identities=23% Similarity=0.197 Sum_probs=36.5
Q ss_pred CCcEEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcc
Q 036331 78 SLRNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTV 137 (147)
Q Consensus 78 ~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i 137 (147)
+|+++++++|.+....+..+..+++|+.+++++|.+....+.+|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455666666665433334555666666666666666665556666666666666666654
No 26
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.15 E-value=7.1e-11 Score=63.02 Aligned_cols=57 Identities=37% Similarity=0.454 Sum_probs=23.5
Q ss_pred ccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCC
Q 036331 31 LTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNN 87 (147)
Q Consensus 31 L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n 87 (147)
|+.+++++|.+....+..+..+++|+++++++|.++...++.|..+++|+++++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444444444222233344444444444444444333334444444444444444
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.10 E-value=1.9e-10 Score=88.33 Aligned_cols=121 Identities=21% Similarity=0.290 Sum_probs=56.4
Q ss_pred cccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCC-----------
Q 036331 6 SLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIG----------- 74 (147)
Q Consensus 6 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~----------- 74 (147)
+|+.|++++|.+. .+|..+. .+|+.|++++|.+. .+|..+. ++|+.+++++|+++. +|..+.
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N 314 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSN 314 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCC
Confidence 4556666666555 4444332 34555555555555 3444332 345555555555442 222111
Q ss_pred --------CCCCCcEEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccc
Q 036331 75 --------NLSSLRNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSV 139 (147)
Q Consensus 75 --------~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~ 139 (147)
-.++|+.|++++|.+. .+|..+. ++|+.|++++|.+.. +|..+ .++|++|++++|.++.
T Consensus 315 ~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 315 SLTALPETLPPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTN 381 (754)
T ss_pred ccccCCccccccceeccccCCccc-cCChhhc--CcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCC
Confidence 0134555555555542 2343321 455556666555542 33322 2355556666555553
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.08 E-value=2e-10 Score=88.28 Aligned_cols=122 Identities=22% Similarity=0.338 Sum_probs=88.0
Q ss_pred CcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEc
Q 036331 5 KSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSL 84 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l 84 (147)
++|+.|++++|.++ .+|..+. .+|+.+++++|.+. .+|..+. .+|+.+++++|++. .+|..+. .+|+.|++
T Consensus 220 ~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~L 290 (754)
T PRK15370 220 GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSV 290 (754)
T ss_pred cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEEC
Confidence 47999999999998 5776543 47999999999998 6777654 58999999999998 5677654 48999999
Q ss_pred cCCccccCchHHhh-------------------cCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccc
Q 036331 85 FNNGLYSSIPEEIG-------------------YLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSV 139 (147)
Q Consensus 85 ~~n~l~~~~~~~~~-------------------~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~ 139 (147)
++|.+.+ +|..+. -.++|+.|++++|.+++ +|..+. ++|+.|++++|.+..
T Consensus 291 s~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~ 360 (754)
T PRK15370 291 YDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV 360 (754)
T ss_pred CCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc
Confidence 9998853 443221 11345566666666554 333332 578888888888763
No 29
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.01 E-value=8.1e-12 Score=87.65 Aligned_cols=133 Identities=26% Similarity=0.244 Sum_probs=83.0
Q ss_pred ccEEEccCCcccccCCc-cCCCCCCccEEeccccccccCCCcccCCCCCCCEEEccc-CcccccCCCCCCCCCCCcEEEc
Q 036331 7 LLQLDLSENQLSGSIPL-SFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHV-NQLNGVIPPSIGNLSSLRNLSL 84 (147)
Q Consensus 7 L~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~-n~~~~~~~~~~~~l~~L~~l~l 84 (147)
.+.+.+..|+++ .+|+ .|..+++|+.++++.|.++...|+.|..+.++..+.+.+ |+|+....+.|.++..++.+.+
T Consensus 69 tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 345666666666 3444 366677777777777777666667776666665555444 6666433355666667777766
Q ss_pred cCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccc
Q 036331 85 FNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVL 140 (147)
Q Consensus 85 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~ 140 (147)
.-|.+.-.....+..++++..|.+.+|.+....-..+.++.+++++.+..|++.+.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd 203 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD 203 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc
Confidence 66666555556666777777777777665533333566666677776666664433
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.99 E-value=2.3e-10 Score=82.48 Aligned_cols=130 Identities=35% Similarity=0.483 Sum_probs=74.3
Q ss_pred cccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEcc
Q 036331 6 SLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLF 85 (147)
Q Consensus 6 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~ 85 (147)
+|+.+++++|++. .+|..+..+++|+.|+++.|.+. ..+......+.|+.+++++|++. ..|........|+++.++
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 5666777777666 45555666677777777777666 44554445666666666666666 344433333345555555
Q ss_pred CC-----------------------ccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccccc
Q 036331 86 NN-----------------------GLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLL 141 (147)
Q Consensus 86 ~n-----------------------~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~ 141 (147)
+| .+ ...+..++.+++++.+++.+|.++.... +..+.+++++++++|.+....
T Consensus 218 ~N~~~~~~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 218 NNSIIELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred CCcceecchhhhhcccccccccCCcee-eeccchhccccccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence 55 33 1223444555556666666666554322 556666666666666665443
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.92 E-value=3.7e-10 Score=81.34 Aligned_cols=135 Identities=33% Similarity=0.445 Sum_probs=105.1
Q ss_pred CCCcccEEEccCCcccccCCccCCCCC-CccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 3 NLKSLLQLDLSENQLSGSIPLSFGNLS-SLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
.++.++.+++.++.++ .++....... +|+.+++++|.+. ..+..+..++.|+.++++.|.+. ..|......+.++.
T Consensus 114 ~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~ 190 (394)
T COG4886 114 ELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNN 190 (394)
T ss_pred cccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhh
Confidence 3467889999999998 6777777775 9999999999998 66778889999999999999999 56666667889999
Q ss_pred EEccCCccccCchHHhhcCCcccEEEccCceeeec----------------------chHhhhhcccCcEEEeecCcccc
Q 036331 82 LSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGL----------------------FLIQLVALHLCLHLRLHRWTVSV 139 (147)
Q Consensus 82 l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~----------------------~~~~~~~l~~L~~l~l~~n~i~~ 139 (147)
+++++|.+ ..+|........|+.+.+.+|..... .+..+..+++++++++++|.++.
T Consensus 191 L~ls~N~i-~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 191 LDLSGNKI-SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred eeccCCcc-ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccc
Confidence 99999998 56676655566688888888732211 13455566777778888877766
Q ss_pred cc
Q 036331 140 LL 141 (147)
Q Consensus 140 ~~ 141 (147)
.-
T Consensus 270 i~ 271 (394)
T COG4886 270 IS 271 (394)
T ss_pred cc
Confidence 54
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.88 E-value=3.4e-10 Score=82.93 Aligned_cols=124 Identities=27% Similarity=0.325 Sum_probs=104.9
Q ss_pred cccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEcc
Q 036331 6 SLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLF 85 (147)
Q Consensus 6 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~ 85 (147)
-|+.+.++.|+++ .+|+.++....|..++.+.|.+. ..|..++.+.+|+.+.+..|.+. .+|..+..++ |..+|++
T Consensus 144 pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfS 219 (722)
T KOG0532|consen 144 PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFS 219 (722)
T ss_pred cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecc
Confidence 3788999999998 89999999999999999999998 88999999999999999999998 6788777554 9999999
Q ss_pred CCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcc---cCcEEEeecC
Q 036331 86 NNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALH---LCLHLRLHRW 135 (147)
Q Consensus 86 ~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~---~L~~l~l~~n 135 (147)
+|++ ..+|-.|.+|..|+.|-+.+|++... |+.++..- =.++|+.+-+
T Consensus 220 cNki-s~iPv~fr~m~~Lq~l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 220 CNKI-SYLPVDFRKMRHLQVLQLENNPLQSP-PAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cCce-eecchhhhhhhhheeeeeccCCCCCC-hHHHHhccceeeeeeecchhc
Confidence 9999 78899999999999999999999854 55554332 2445555554
No 33
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.81 E-value=1.1e-08 Score=78.80 Aligned_cols=109 Identities=29% Similarity=0.318 Sum_probs=83.1
Q ss_pred cccEEEccCCcccccCCccCC-----------------CCCCccEEeccccccccCCCcccCCCCCCCEEEcccCccccc
Q 036331 6 SLLQLDLSENQLSGSIPLSFG-----------------NLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGV 68 (147)
Q Consensus 6 ~L~~l~l~~~~~~~~~~~~~~-----------------~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 68 (147)
+|+.|++++|+++. +|.... ...+|+.+++++|.++ .+|.. .+.|+.+++++|.+. .
T Consensus 343 ~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-s 416 (788)
T PRK15387 343 GLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-S 416 (788)
T ss_pred ccceEecCCCccCC-CCCCCcccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-C
Confidence 67888888888773 443211 1236778888888887 45543 367999999999998 4
Q ss_pred CCCCCCCCCCCcEEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhc
Q 036331 69 IPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVAL 124 (147)
Q Consensus 69 ~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l 124 (147)
+|.. ..+|+.+++++|.+ ..+|..+..+++|+.+++++|++++..+..+..+
T Consensus 417 IP~l---~~~L~~L~Ls~NqL-t~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 417 LPML---PSGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred CCcc---hhhhhhhhhccCcc-cccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 6653 34688999999999 5789999999999999999999999887776443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.75 E-value=2.7e-09 Score=73.27 Aligned_cols=108 Identities=21% Similarity=0.139 Sum_probs=82.8
Q ss_pred CCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCcccE
Q 036331 26 GNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSE 105 (147)
Q Consensus 26 ~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~ 105 (147)
..+..|+.+|+++|.++ .+..++.-+|.++.++++.|.+..+ +++.-+++|+.+++++|.+ .....+-..+-+...
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~L-s~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLL-AECVGWHLKLGNIKT 356 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchh-HhhhhhHhhhcCEee
Confidence 34678888999999888 6677777788899999999988733 3477788899999999887 444555556777888
Q ss_pred EEccCceeeecchHhhhhcccCcEEEeecCcccc
Q 036331 106 LELCTIILVGLFLIQLVALHLCLHLRLHRWTVSV 139 (147)
Q Consensus 106 l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~ 139 (147)
|.+.+|.+-.. ..+.++=+|..||+++|+|..
T Consensus 357 L~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ 388 (490)
T KOG1259|consen 357 LKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEE 388 (490)
T ss_pred eehhhhhHhhh--hhhHhhhhheeccccccchhh
Confidence 88888865532 356677789999999998854
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.73 E-value=2.4e-09 Score=74.22 Aligned_cols=144 Identities=16% Similarity=0.095 Sum_probs=96.6
Q ss_pred CCCCcccEEEccCCcccccCCcc----CCCCCCccEEeccccccccC-------------CCcccCCCCCCCEEEcccCc
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLS----FGNLSSLTMKSPFSNSLSGS-------------IPPILGNLKSLSTLRLHVNQ 64 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~----~~~~~~L~~l~l~~~~~~~~-------------~~~~~~~l~~L~~l~l~~n~ 64 (147)
..+++|+++++++|.+....++. +..+..|+.|++.+|.+... .......-+.|+++...+|.
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 35678999999999876444433 34578899999999877621 22233445678888888887
Q ss_pred cccc----CCCCCCCCCCCcEEEccCCcccc----CchHHhhcCCcccEEEccCceeeec----chHhhhhcccCcEEEe
Q 036331 65 LNGV----IPPSIGNLSSLRNLSLFNNGLYS----SIPEEIGYLMSVSELELCTIILVGL----FLIQLVALHLCLHLRL 132 (147)
Q Consensus 65 ~~~~----~~~~~~~l~~L~~l~l~~n~l~~----~~~~~~~~~~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~l~l 132 (147)
+... +-..+...+.|+.+.++.|.+.. .+...+.++++|+.||+.+|-++.. +...++.+++|+++++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 7521 12345566778888888877652 2234567788888888888877642 3445667777888888
Q ss_pred ecCcccccccccc
Q 036331 133 HRWTVSVLLATAL 145 (147)
Q Consensus 133 ~~n~i~~~~~~~~ 145 (147)
++|.+...-+.||
T Consensus 249 ~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 249 GDCLLENEGAIAF 261 (382)
T ss_pred cccccccccHHHH
Confidence 8777766655554
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.2e-09 Score=77.65 Aligned_cols=138 Identities=26% Similarity=0.182 Sum_probs=78.3
Q ss_pred CCCcccEEEccCCcccccCCccC-CCCCCccEEecccccccc-CCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCc
Q 036331 3 NLKSLLQLDLSENQLSGSIPLSF-GNLSSLTMKSPFSNSLSG-SIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLR 80 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~~~~~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~ 80 (147)
++++|+.|+++.|++.-...... ..+++++.|.++.|.++. .+......+|+++.+.+..|...........-++.|+
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 45666666666666542222211 235666666666666652 2233334566677777766642211112223356677
Q ss_pred EEEccCCccccCc-hHHhhcCCcccEEEccCceeeec-chH-----hhhhcccCcEEEeecCccccc
Q 036331 81 NLSLFNNGLYSSI-PEEIGYLMSVSELELCTIILVGL-FLI-----QLVALHLCLHLRLHRWTVSVL 140 (147)
Q Consensus 81 ~l~l~~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~-~~~-----~~~~l~~L~~l~l~~n~i~~~ 140 (147)
.|++++|.+.... -...+.++.|..+.++.+.+... .|. ....+++|++|++..|+|..+
T Consensus 250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w 316 (505)
T KOG3207|consen 250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW 316 (505)
T ss_pred hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc
Confidence 8888877764322 13466777788888777776642 111 134578888888888888544
No 37
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.68 E-value=2.2e-10 Score=86.12 Aligned_cols=130 Identities=25% Similarity=0.175 Sum_probs=102.0
Q ss_pred CcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEc
Q 036331 5 KSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSL 84 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l 84 (147)
-.|.+.++++|++. .....+.-++.++.|+++.|.+.+. . .+..++.|+++|+++|.++ ..|..-.--..|+.|.+
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-H-HHHhcccccccccccchhc-cccccchhhhhheeeee
Confidence 35677788888887 5666677789999999999999833 3 7788999999999999998 55653332234999999
Q ss_pred cCCccccCchHHhhcCCcccEEEccCceeeecc-hHhhhhcccCcEEEeecCccccc
Q 036331 85 FNNGLYSSIPEEIGYLMSVSELELCTIILVGLF-LIQLVALHLCLHLRLHRWTVSVL 140 (147)
Q Consensus 85 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~l~~L~~l~l~~n~i~~~ 140 (147)
.+|.++. -..+.++.+|+.||++.|-+.+-- -.-++.+..|+.|.+.+|++.+.
T Consensus 240 rnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 240 RNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred cccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 9999843 345788999999999999877532 13567888999999999999765
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.66 E-value=3.2e-08 Score=77.57 Aligned_cols=106 Identities=29% Similarity=0.265 Sum_probs=64.6
Q ss_pred CCccEEeccccc--cccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCcccEE
Q 036331 29 SSLTMKSPFSNS--LSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSEL 106 (147)
Q Consensus 29 ~~L~~l~l~~~~--~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l 106 (147)
+.|++|-+.+|. +.......|..++.|+++|+++|.--+++|..++.+.+|++|++++..+ ..+|..++++.+|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I-~~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI-SHLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc-cccchHHHHHHhhhee
Confidence 356666666664 3323334455666677777766554446666666666677777766666 4666666666666777
Q ss_pred EccCceeeecchHhhhhcccCcEEEeecC
Q 036331 107 ELCTIILVGLFLIQLVALHLCLHLRLHRW 135 (147)
Q Consensus 107 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~n 135 (147)
++..+.....++.....+.+|++|.+..-
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccccccccccccchhhhcccccEEEeecc
Confidence 66666544444555555666666665543
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.56 E-value=4e-08 Score=76.99 Aligned_cols=107 Identities=30% Similarity=0.301 Sum_probs=80.0
Q ss_pred CCcccEEEccCCc--ccccCCc-cCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCc
Q 036331 4 LKSLLQLDLSENQ--LSGSIPL-SFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLR 80 (147)
Q Consensus 4 l~~L~~l~l~~~~--~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~ 80 (147)
.+.|++|-+.+|. +. ..+. .|..++.|++||+++|.--+.+|+.++.+-+|+++++.++.+. .+|..+..+..|.
T Consensus 544 ~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI 621 (889)
T ss_pred CCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence 3457777777775 33 3333 3667888888888877655578888888888888888888888 7888888888888
Q ss_pred EEEccCCccccCchHHhhcCCcccEEEccCce
Q 036331 81 NLSLFNNGLYSSIPEEIGYLMSVSELELCTII 112 (147)
Q Consensus 81 ~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~ 112 (147)
+|++..+.-...+|.....+.+|+.|.+....
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccc
Confidence 88888877555556666668888888876654
No 40
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.54 E-value=1.6e-09 Score=66.23 Aligned_cols=85 Identities=24% Similarity=0.254 Sum_probs=50.9
Q ss_pred CCCCccEEeccccccccCCCcccCCC-CCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCcccE
Q 036331 27 NLSSLTMKSPFSNSLSGSIPPILGNL-KSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSE 105 (147)
Q Consensus 27 ~~~~L~~l~l~~~~~~~~~~~~~~~l-~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~ 105 (147)
....|...++++|.+. .+|..+..- +..+.+++.+|.++ ..|..+..++.|+.+++..|.+ ...|+.+..+.++..
T Consensus 51 ~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l-~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPL-NAEPRVIAPLIKLDM 127 (177)
T ss_pred CCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcc-ccchHHHHHHHhHHH
Confidence 3445555666666665 445444433 35666666666666 4565566666666666666666 455666666666666
Q ss_pred EEccCceee
Q 036331 106 LELCTIILV 114 (147)
Q Consensus 106 l~l~~n~~~ 114 (147)
|+..+|...
T Consensus 128 Lds~~na~~ 136 (177)
T KOG4579|consen 128 LDSPENARA 136 (177)
T ss_pred hcCCCCccc
Confidence 666555544
No 41
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.53 E-value=1.8e-07 Score=60.68 Aligned_cols=106 Identities=22% Similarity=0.150 Sum_probs=80.3
Q ss_pred CCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCcccc--CchHHhhcCCcccE
Q 036331 28 LSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYS--SIPEEIGYLMSVSE 105 (147)
Q Consensus 28 ~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~--~~~~~~~~~~~L~~ 105 (147)
......+|+.+|.+. ..+.+..++.|.++.+.+|.|+...|..-..++++..|.+.+|.+.. .+ ..+..+|+|+.
T Consensus 41 ~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccce
Confidence 346777889999886 34667888999999999999987766665667889999999988742 22 22567789999
Q ss_pred EEccCceeeecch---HhhhhcccCcEEEeecCc
Q 036331 106 LELCTIILVGLFL---IQLVALHLCLHLRLHRWT 136 (147)
Q Consensus 106 l~l~~n~~~~~~~---~~~~~l~~L~~l~l~~n~ 136 (147)
|.+.+|++...-. -++..+|+|++||++.-.
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 9999998875421 267788999999987643
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=9.1e-09 Score=73.37 Aligned_cols=107 Identities=23% Similarity=0.157 Sum_probs=47.0
Q ss_pred CCcccEEEccCCcccccCC--ccCCCCCCccEEecccccccc--CCCcccCCCCCCCEEEcccCcccccCC-CCCCCCCC
Q 036331 4 LKSLLQLDLSENQLSGSIP--LSFGNLSSLTMKSPFSNSLSG--SIPPILGNLKSLSTLRLHVNQLNGVIP-PSIGNLSS 78 (147)
Q Consensus 4 l~~L~~l~l~~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~l~~L~~l~l~~n~~~~~~~-~~~~~l~~ 78 (147)
+.+|+.+.+..+.+. ..+ .....+++++.|+++.|-+.. .+-....++++|+.|+++.|++..... ..-..++.
T Consensus 120 ~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 344555555555443 122 234455555555555554431 112333345555555555555541111 11113445
Q ss_pred CcEEEccCCccccCchHH-hhcCCcccEEEccCc
Q 036331 79 LRNLSLFNNGLYSSIPEE-IGYLMSVSELELCTI 111 (147)
Q Consensus 79 L~~l~l~~n~l~~~~~~~-~~~~~~L~~l~l~~n 111 (147)
++.|.++.|.++...-.+ ....|+|+.|++..|
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 555555555554222221 223455555555555
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.51 E-value=1.3e-08 Score=73.91 Aligned_cols=127 Identities=24% Similarity=0.285 Sum_probs=66.8
Q ss_pred ccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccC
Q 036331 7 LLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFN 86 (147)
Q Consensus 7 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~ 86 (147)
++.+++..|.+. ..-..+..+.++..+++.+|.+. .+...+..+.+|+++++++|.|+.. ..+..+..|+.|++.+
T Consensus 74 l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 74 LKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSG 149 (414)
T ss_pred HHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhheecc
Confidence 334444444443 22233455666666666666665 3333355566666666666666532 2334455566666666
Q ss_pred CccccCchHHhhcCCcccEEEccCceeeecch-HhhhhcccCcEEEeecCccccc
Q 036331 87 NGLYSSIPEEIGYLMSVSELELCTIILVGLFL-IQLVALHLCLHLRLHRWTVSVL 140 (147)
Q Consensus 87 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~l~~L~~l~l~~n~i~~~ 140 (147)
|.+.. ...+..++.|+.+++++|.+....+ . ...+.++..+++..|.+..+
T Consensus 150 N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 150 NLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI 201 (414)
T ss_pred Ccchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence 66522 1223345666666666666554432 1 35555666666666655444
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.44 E-value=5.4e-08 Score=70.77 Aligned_cols=108 Identities=28% Similarity=0.290 Sum_probs=83.0
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
..+.+++.+++.+|++. .+...+..+++|+++++++|.++.. ..+..++.|+.+++.+|.+.. ...+..+..++.
T Consensus 92 ~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLISD--ISGLESLKSLKL 166 (414)
T ss_pred ccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhheeccCcchh--ccCCccchhhhc
Confidence 45788999999999987 3444467799999999999999843 334577779999999999983 244556889999
Q ss_pred EEccCCccccCch-HHhhcCCcccEEEccCceeee
Q 036331 82 LSLFNNGLYSSIP-EEIGYLMSVSELELCTIILVG 115 (147)
Q Consensus 82 l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~ 115 (147)
+++++|.+...-+ . ...+.+++.+.+.+|.+..
T Consensus 167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred ccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 9999998854333 1 4677888888888887664
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.42 E-value=3.6e-07 Score=45.20 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=17.9
Q ss_pred cccEEEccCceeeecchHhhhhcccCcEEEeecCccccc
Q 036331 102 SVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVL 140 (147)
Q Consensus 102 ~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~ 140 (147)
+|++|++++|.++. +|+.+..+++|++|++++|.|+..
T Consensus 2 ~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCC
Confidence 34555555555552 233455555555555555555443
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.30 E-value=1.5e-08 Score=62.00 Aligned_cols=81 Identities=21% Similarity=0.195 Sum_probs=37.2
Q ss_pred CCCEEEcccCcccccCCCCCCC-CCCCcEEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEe
Q 036331 54 SLSTLRLHVNQLNGVIPPSIGN-LSSLRNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRL 132 (147)
Q Consensus 54 ~L~~l~l~~n~~~~~~~~~~~~-l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l 132 (147)
.|...++++|.+. .+|..|.. .+.++.+++.+|.+ ..+|..+..++.|+.++++.|++... |..+..+.++..|+.
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~lNl~~N~l~~~-p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEI-SDVPEELAAMPALRSLNLRFNPLNAE-PRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhh-hhchHHHhhhHHhhhcccccCccccc-hHHHHHHHhHHHhcC
Confidence 3444455555544 33433322 23445555555554 34444455555555555555554432 333444444444444
Q ss_pred ecCcc
Q 036331 133 HRWTV 137 (147)
Q Consensus 133 ~~n~i 137 (147)
.+|.+
T Consensus 131 ~~na~ 135 (177)
T KOG4579|consen 131 PENAR 135 (177)
T ss_pred CCCcc
Confidence 44443
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.26 E-value=1.6e-06 Score=42.86 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=19.7
Q ss_pred CCcEEEccCCccccCchHHhhcCCcccEEEccCceee
Q 036331 78 SLRNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILV 114 (147)
Q Consensus 78 ~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 114 (147)
+|+++++++|.+. .+|+.++.+++|+.|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4556666666653 44555556666666666666555
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.23 E-value=2.1e-07 Score=71.35 Aligned_cols=135 Identities=18% Similarity=0.155 Sum_probs=88.5
Q ss_pred CcccEEEccCCcc-cccCCccCC-CCCCccEEeccccccccC-CCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 5 KSLLQLDLSENQL-SGSIPLSFG-NLSSLTMKSPFSNSLSGS-IPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 5 ~~L~~l~l~~~~~-~~~~~~~~~-~~~~L~~l~l~~~~~~~~-~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
.+|+.|+++|... ....|..++ -+|+|+.|.+.+-.+... ...-...+++|..||+++++++. + ..++.+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHH
Confidence 3577888887543 222333333 478888888888766422 22333467888888888888873 3 55677888888
Q ss_pred EEccCCcccc-CchHHhhcCCcccEEEccCceeeecc--h----HhhhhcccCcEEEeecCcccccc
Q 036331 82 LSLFNNGLYS-SIPEEIGYLMSVSELELCTIILVGLF--L----IQLVALHLCLHLRLHRWTVSVLL 141 (147)
Q Consensus 82 l~l~~n~l~~-~~~~~~~~~~~L~~l~l~~n~~~~~~--~----~~~~~l~~L~~l~l~~n~i~~~~ 141 (147)
|.+.+-.+.. ..-..+..+++|+.||+++....... . +.-..+|.|+.||+++..+....
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 8887766532 22345678888889988887655432 1 22235888999999888776654
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.22 E-value=2.2e-08 Score=75.72 Aligned_cols=107 Identities=24% Similarity=0.182 Sum_probs=83.2
Q ss_pred CCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCcccEEE
Q 036331 28 LSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSELE 107 (147)
Q Consensus 28 ~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~ 107 (147)
+..|.+.+.+.|++. .+..++.-++.++.++++.|+++.+ +.+..++.|++||+++|.+ ..+|..-..-.+|+.|.
T Consensus 163 Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L-~~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCL-RHVPQLSMVGCKLQLLN 238 (1096)
T ss_pred hhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchh-ccccccchhhhhheeee
Confidence 345666677778877 6677777788999999999999844 3788899999999999998 45565332234489999
Q ss_pred ccCceeeecchHhhhhcccCcEEEeecCccccc
Q 036331 108 LCTIILVGLFLIQLVALHLCLHLRLHRWTVSVL 140 (147)
Q Consensus 108 l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~ 140 (147)
+.+|.++.. ..+.++.+|..||+++|-|.+-
T Consensus 239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEH 269 (1096)
T ss_pred ecccHHHhh--hhHHhhhhhhccchhHhhhhcc
Confidence 999988854 4578899999999999988653
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.21 E-value=1.3e-06 Score=59.55 Aligned_cols=142 Identities=18% Similarity=0.132 Sum_probs=96.0
Q ss_pred CCCCcccEEEccCCcccccCCcc----CCCCCCccEEeccccccccCCCccc-------------CCCCCCCEEEcccCc
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLS----FGNLSSLTMKSPFSNSLSGSIPPIL-------------GNLKSLSTLRLHVNQ 64 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~----~~~~~~L~~l~l~~~~~~~~~~~~~-------------~~l~~L~~l~l~~n~ 64 (147)
.+|++|+++++++|.+....|+. +.....|.+|.+.+|.+...-...+ ..-|.|+++...+|.
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 57899999999999987666654 4567889999999997762222222 235678888888888
Q ss_pred ccccCCC-----CCCCCCCCcEEEccCCccccC-----chHHhhcCCcccEEEccCceeeec----chHhhhhcccCcEE
Q 036331 65 LNGVIPP-----SIGNLSSLRNLSLFNNGLYSS-----IPEEIGYLMSVSELELCTIILVGL----FLIQLVALHLCLHL 130 (147)
Q Consensus 65 ~~~~~~~-----~~~~l~~L~~l~l~~n~l~~~-----~~~~~~~~~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~l 130 (147)
+. ..|. .+..-..++++.+..|.+.-. .-.....+.+|+.||+.+|-++.. .+..++.|+.|++|
T Consensus 169 le-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 169 LE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 75 2221 122334678888888876522 112335668888888888877742 34466778888888
Q ss_pred EeecCccccccccc
Q 036331 131 RLHRWTVSVLLATA 144 (147)
Q Consensus 131 ~l~~n~i~~~~~~~ 144 (147)
.+..|-++.....+
T Consensus 248 ~lnDClls~~G~~~ 261 (388)
T COG5238 248 RLNDCLLSNEGVKS 261 (388)
T ss_pred cccchhhccccHHH
Confidence 88877776554433
No 51
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.19 E-value=1.6e-07 Score=65.44 Aligned_cols=133 Identities=17% Similarity=0.100 Sum_probs=71.1
Q ss_pred CcccEEEccCCccccc----CCccCCCCCCccEEecccccccc----CCCcccCCCCCCCEEEcccCccccc----CCCC
Q 036331 5 KSLLQLDLSENQLSGS----IPLSFGNLSSLTMKSPFSNSLSG----SIPPILGNLKSLSTLRLHVNQLNGV----IPPS 72 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~----~~~~~~~~l~~L~~l~l~~n~~~~~----~~~~ 72 (147)
+.|+++.+..|++... +...+...+.|+.+.++.|.+.. .....+..+++|+++++++|.++.. +...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 4566666666655321 11223444566666666665541 1123344566677777777666522 2244
Q ss_pred CCCCCCCcEEEccCCccccCchHHh-----hcCCcccEEEccCceeeec----chHhhhhcccCcEEEeecCcc
Q 036331 73 IGNLSSLRNLSLFNNGLYSSIPEEI-----GYLMSVSELELCTIILVGL----FLIQLVALHLCLHLRLHRWTV 137 (147)
Q Consensus 73 ~~~l~~L~~l~l~~n~l~~~~~~~~-----~~~~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~l~l~~n~i 137 (147)
+..+++|+++++++|.+...-...+ ...|+|+.+.+.+|.++.. +...+...+.|..|++++|.+
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 5556667777777666543222211 1246667777777766632 222444566666777777766
No 52
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.04 E-value=4e-06 Score=56.37 Aligned_cols=110 Identities=17% Similarity=0.137 Sum_probs=77.0
Q ss_pred CCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccC--cccccCCCCCCCCCCCcEEEccCCcccc--CchHH
Q 036331 21 IPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVN--QLNGVIPPSIGNLSSLRNLSLFNNGLYS--SIPEE 96 (147)
Q Consensus 21 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n--~~~~~~~~~~~~l~~L~~l~l~~n~l~~--~~~~~ 96 (147)
+......+.+|+.+.+.+..++ .-..+..+++|+.+.++.| .+.+.++-....+++|++++++.|++.. .+ ..
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RP 111 (260)
T ss_pred cccccccccchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-ch
Confidence 4444556778888888888776 3455678889999999999 5555555555566999999999999752 11 12
Q ss_pred hhcCCcccEEEccCceeeecc---hHhhhhcccCcEEEee
Q 036331 97 IGYLMSVSELELCTIILVGLF---LIQLVALHLCLHLRLH 133 (147)
Q Consensus 97 ~~~~~~L~~l~l~~n~~~~~~---~~~~~~l~~L~~l~l~ 133 (147)
...+.+|..|++..|..+... -..+.-+++|++++-.
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 456677788888888777532 2366778888877543
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.02 E-value=1.2e-05 Score=52.48 Aligned_cols=102 Identities=23% Similarity=0.225 Sum_probs=74.1
Q ss_pred cccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCC-CCCCCEEEcccCcccccC-CCCCCCCCCCcEEE
Q 036331 6 SLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGN-LKSLSTLRLHVNQLNGVI-PPSIGNLSSLRNLS 83 (147)
Q Consensus 6 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~-l~~L~~l~l~~n~~~~~~-~~~~~~l~~L~~l~ 83 (147)
+...+++++|.+. ..+.+..++.|.+|.+.+|+++ .+...+.. ++.++.+.+.+|++.... -+.+..+++|+++.
T Consensus 43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchh--hcccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4566778888765 3335678899999999999999 44444444 577999999999998311 23456788999999
Q ss_pred ccCCccccCc---hHHhhcCCcccEEEccC
Q 036331 84 LFNNGLYSSI---PEEIGYLMSVSELELCT 110 (147)
Q Consensus 84 l~~n~l~~~~---~~~~~~~~~L~~l~l~~ 110 (147)
+-+|.....- -..+..+|+|+.||+..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 9998875321 12456789999999754
No 54
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.94 E-value=6.9e-05 Score=45.51 Aligned_cols=120 Identities=15% Similarity=0.129 Sum_probs=46.1
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
.++++|+.+.+.. .+...-...|.++.+++.+.+.++ +.......+..+.+++.+.+.. .+.......+..+.+++.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 4555666666654 343222233556666777766654 4433345555665666666654 333223344555666666
Q ss_pred EEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccC
Q 036331 82 LSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLC 127 (147)
Q Consensus 82 l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L 127 (147)
+.+..+ +...-...+... +++.+.+.. .+......+|.++++|
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 666543 221112234444 566666544 2232333455555444
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.92 E-value=4.8e-05 Score=55.09 Aligned_cols=117 Identities=17% Similarity=0.194 Sum_probs=64.5
Q ss_pred CCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccC-cccccCCCCCCCCCCCcE
Q 036331 3 NLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVN-QLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n-~~~~~~~~~~~~l~~L~~ 81 (147)
.+.+++.|++++|.+. .+|. -..+|+.|.+.+|.--...|+.+ .++|+.|.+.+| .+. .+|.. |+.
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~s------Le~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPES------VRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccccc------cce
Confidence 3577889999998776 5662 23468888887754333555543 257888888777 343 34433 444
Q ss_pred EEccCCcc--ccCchHHhhcC------------------CcccEEEccCceeeecchHhhhhcccCcEEEeecC
Q 036331 82 LSLFNNGL--YSSIPEEIGYL------------------MSVSELELCTIILVGLFLIQLVALHLCLHLRLHRW 135 (147)
Q Consensus 82 l~l~~n~l--~~~~~~~~~~~------------------~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n 135 (147)
|++..+.. ...+|..+..+ ++|+.|++.+|.... .|..+. .+|+.|+++.+
T Consensus 117 L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 117 LEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence 44444332 13344333222 356677776665442 222111 35666666554
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.78 E-value=6.2e-06 Score=63.54 Aligned_cols=109 Identities=20% Similarity=0.217 Sum_probs=80.7
Q ss_pred CCCccEEecccccc-ccCCCcccCC-CCCCCEEEcccCcccc-cCCCCCCCCCCCcEEEccCCccccCchHHhhcCCccc
Q 036331 28 LSSLTMKSPFSNSL-SGSIPPILGN-LKSLSTLRLHVNQLNG-VIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVS 104 (147)
Q Consensus 28 ~~~L~~l~l~~~~~-~~~~~~~~~~-l~~L~~l~l~~n~~~~-~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~ 104 (147)
-.+|+.|+++|... ...++..++. +|+|+.+.+.+-.+.. .+.....++++|..||+++..+... ..+..+++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence 35788899988653 3344544554 6999999998877642 3345566789999999999998433 6688999999
Q ss_pred EEEccCceeee-cchHhhhhcccCcEEEeecCccc
Q 036331 105 ELELCTIILVG-LFLIQLVALHLCLHLRLHRWTVS 138 (147)
Q Consensus 105 ~l~l~~n~~~~-~~~~~~~~l~~L~~l~l~~n~i~ 138 (147)
.|.+.+-.+.. ..-..+..+.+|+.||+|...-.
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 99988776664 33346788999999999976543
No 57
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=4.6e-07 Score=62.35 Aligned_cols=135 Identities=17% Similarity=0.124 Sum_probs=75.3
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccC--CCcccCCCCCCCEEEcccCcccccCCC-CCCC-CC
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGS--IPPILGNLKSLSTLRLHVNQLNGVIPP-SIGN-LS 77 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~-l~ 77 (147)
.+|++|+.+.+.++.+.+.+-..+.+-.+|+.++++++.-... ..--+..++.|+.+++++|....+.-. .... -.
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise 286 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISE 286 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhch
Confidence 3567788888888888766666677788888888888753211 112334577788888888766532111 1111 12
Q ss_pred CCcEEEccCCccc---cCchHHhhcCCcccEEEccCcee-eecchHhhhhcccCcEEEeecCc
Q 036331 78 SLRNLSLFNNGLY---SSIPEEIGYLMSVSELELCTIIL-VGLFLIQLVALHLCLHLRLHRWT 136 (147)
Q Consensus 78 ~L~~l~l~~n~l~---~~~~~~~~~~~~L~~l~l~~n~~-~~~~~~~~~~l~~L~~l~l~~n~ 136 (147)
+++.+++++..-. +.+..-...+|++.+||+++|.. +......+.+++.|+++.+++|.
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 4555555554311 11222234556666666665532 22333455556666666665553
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.58 E-value=4.9e-05 Score=52.03 Aligned_cols=111 Identities=19% Similarity=0.178 Sum_probs=68.8
Q ss_pred CCcccEEEccCCccccc----CCccCCCCCCccEEeccccccc---c-------CCCcccCCCCCCCEEEcccCcccccC
Q 036331 4 LKSLLQLDLSENQLSGS----IPLSFGNLSSLTMKSPFSNSLS---G-------SIPPILGNLKSLSTLRLHVNQLNGVI 69 (147)
Q Consensus 4 l~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~---~-------~~~~~~~~l~~L~~l~l~~n~~~~~~ 69 (147)
+..++.++++||.+... +...+.+-.+|+..++++-... . .+.+.+..|+.++.++++.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 66788899999887533 3334555667777777665332 1 22245556788888888888877665
Q ss_pred CCCC----CCCCCCcEEEccCCccc----cCch---------HHhhcCCcccEEEccCceee
Q 036331 70 PPSI----GNLSSLRNLSLFNNGLY----SSIP---------EEIGYLMSVSELELCTIILV 114 (147)
Q Consensus 70 ~~~~----~~l~~L~~l~l~~n~l~----~~~~---------~~~~~~~~L~~l~l~~n~~~ 114 (147)
|+.+ ..-..+.++.+++|.+. +.+. .....-|.|+.++.++|++-
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 5443 34456788888888763 1111 11233477777777777654
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.56 E-value=6e-05 Score=50.84 Aligned_cols=100 Identities=22% Similarity=0.239 Sum_probs=68.6
Q ss_pred CcccEEEccCCcccccCCccCCCCCCccEEecccc--ccccCCCcccCCCCCCCEEEcccCcccccCCCC---CCCCCCC
Q 036331 5 KSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSN--SLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPS---IGNLSSL 79 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~--~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~---~~~l~~L 79 (147)
..|+.+++.+..++ --..+..+++|++|.++.| ++.+.++--...+++|+++++++|+++. +.+ ...+.+|
T Consensus 43 ~~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL 118 (260)
T KOG2739|consen 43 VELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENL 118 (260)
T ss_pred cchhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcch
Confidence 34555555555554 1124567889999999999 6666666666677999999999999983 333 4456778
Q ss_pred cEEEccCCccccCch---HHhhcCCcccEEEc
Q 036331 80 RNLSLFNNGLYSSIP---EEIGYLMSVSELEL 108 (147)
Q Consensus 80 ~~l~l~~n~l~~~~~---~~~~~~~~L~~l~l 108 (147)
..+++++|..+...- ..+.-+++|..++-
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 899999988654211 24556677777764
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=7e-05 Score=51.92 Aligned_cols=39 Identities=21% Similarity=0.057 Sum_probs=21.8
Q ss_pred ccEEEccCceeeecch-HhhhhcccCcEEEeecCcccccc
Q 036331 103 VSELELCTIILVGLFL-IQLVALHLCLHLRLHRWTVSVLL 141 (147)
Q Consensus 103 L~~l~l~~n~~~~~~~-~~~~~l~~L~~l~l~~n~i~~~~ 141 (147)
+..|.++.+.+..... .++.++++|+-+.++.|+++..+
T Consensus 226 ~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 226 LSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred chhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 3344444444433211 24556777778888888776654
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=2.5e-06 Score=58.32 Aligned_cols=98 Identities=21% Similarity=0.176 Sum_probs=49.8
Q ss_pred CcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCC--CCCCCCCCCcEE
Q 036331 5 KSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIP--PSIGNLSSLRNL 82 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~--~~~~~l~~L~~l 82 (147)
.+.++|+..|+++.+ ......++.|+++.++-|.++ .-..+..|++|+.+.+..|.|.. +. .-+.++++|+.|
T Consensus 19 ~~vkKLNcwg~~L~D--Isic~kMp~lEVLsLSvNkIs--sL~pl~rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDD--ISICEKMPLLEVLSLSVNKIS--SLAPLQRCTRLKELYLRKNCIES-LDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccH--HHHHHhcccceeEEeeccccc--cchhHHHHHHHHHHHHHhccccc-HHHHHHHhcCchhhhH
Confidence 345556666666542 112345566666666666665 22334456666666666665542 11 123455566666
Q ss_pred EccCCccccCchH-----HhhcCCcccEEE
Q 036331 83 SLFNNGLYSSIPE-----EIGYLMSVSELE 107 (147)
Q Consensus 83 ~l~~n~l~~~~~~-----~~~~~~~L~~l~ 107 (147)
.+..|.-.+.-+. .+..+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6665554433332 234455555554
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.35 E-value=0.0018 Score=39.15 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=63.9
Q ss_pred cCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCcc
Q 036331 24 SFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSV 103 (147)
Q Consensus 24 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L 103 (147)
.|.+..+|+.+.+.. .+...-...+..++.++.+.+..+ +.......+..+.+++.+.+.. .+.......+..++++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 466777899999875 455466778888889999999875 6645556788887899999976 3322223356678999
Q ss_pred cEEEccCceeeecchHhhhhcccCcEEEeec
Q 036331 104 SELELCTIILVGLFLIQLVALHLCLHLRLHR 134 (147)
Q Consensus 104 ~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~ 134 (147)
+.+.+..+ +.......+..+ .++.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 99999776 554445577777 899888775
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=7.1e-06 Score=56.16 Aligned_cols=100 Identities=22% Similarity=0.192 Sum_probs=75.9
Q ss_pred CCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchH--HhhcCCccc
Q 036331 27 NLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPE--EIGYLMSVS 104 (147)
Q Consensus 27 ~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~--~~~~~~~L~ 104 (147)
.+.+.+.|+..||.+. . -+....|+.|+++.++-|+|+.. ..+..|.+|+++++..|.| ..+.+ -+.++|+|+
T Consensus 17 dl~~vkKLNcwg~~L~-D-Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I-~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLD-D-ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCI-ESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCcc-H-HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhccc-ccHHHHHHHhcCchhh
Confidence 4567778888899887 2 23345899999999999999843 4567899999999999998 34443 356889999
Q ss_pred EEEccCceeeecch-----HhhhhcccCcEEE
Q 036331 105 ELELCTIILVGLFL-----IQLVALHLCLHLR 131 (147)
Q Consensus 105 ~l~l~~n~~~~~~~-----~~~~~l~~L~~l~ 131 (147)
.|.+..|+-.+.-+ .++-.+|+|+-||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999998776533 2556678877665
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.30 E-value=0.00078 Score=49.01 Aligned_cols=102 Identities=19% Similarity=0.127 Sum_probs=67.3
Q ss_pred CCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCccc
Q 036331 25 FGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVS 104 (147)
Q Consensus 25 ~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~ 104 (147)
+..+.+++.|++++|.++ .+|. -..+|+.+.+.++.-...+|+.+. .+|++|++++|.-...+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence 345789999999999887 6662 234699999988654346676542 5899999999843345554 355
Q ss_pred EEEccCcee--eecchHhhhhc------------------ccCcEEEeecCccc
Q 036331 105 ELELCTIIL--VGLFLIQLVAL------------------HLCLHLRLHRWTVS 138 (147)
Q Consensus 105 ~l~l~~n~~--~~~~~~~~~~l------------------~~L~~l~l~~n~i~ 138 (147)
.|++..+.. .+.+|..+..+ ++|++|++++|...
T Consensus 116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i 169 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI 169 (426)
T ss_pred eEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence 566655432 22345444433 36888999887754
No 65
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=5.8e-05 Score=52.32 Aligned_cols=84 Identities=30% Similarity=0.298 Sum_probs=47.4
Q ss_pred CCcccEEEccCCcccc--cCCccCCCCCCccEEeccccccccCCCccc-CCCCCCCEEEcccCcccccCCC-CCCCCCCC
Q 036331 4 LKSLLQLDLSENQLSG--SIPLSFGNLSSLTMKSPFSNSLSGSIPPIL-GNLKSLSTLRLHVNQLNGVIPP-SIGNLSSL 79 (147)
Q Consensus 4 l~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~-~~l~~L~~l~l~~n~~~~~~~~-~~~~l~~L 79 (147)
++.++.+++.+|.+++ .+-.-+.++|.+++|+++.|.+. ..-+.. ....+|+++.+.+..+.+.... .+..++.+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~-s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS-SDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC-CccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 3456666777776652 12223456777777777777766 222233 2445677777766666543332 33456666
Q ss_pred cEEEccCCc
Q 036331 80 RNLSLFNNG 88 (147)
Q Consensus 80 ~~l~l~~n~ 88 (147)
+.+.++.|.
T Consensus 149 telHmS~N~ 157 (418)
T KOG2982|consen 149 TELHMSDNS 157 (418)
T ss_pred hhhhhccch
Confidence 666666663
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.41 E-value=0.0024 Score=26.37 Aligned_cols=12 Identities=25% Similarity=0.207 Sum_probs=5.7
Q ss_pred ccEEEccCceee
Q 036331 103 VSELELCTIILV 114 (147)
Q Consensus 103 L~~l~l~~n~~~ 114 (147)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444444444444
No 67
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.00026 Score=49.18 Aligned_cols=87 Identities=20% Similarity=0.106 Sum_probs=60.3
Q ss_pred CCCEEEcccCcccc-cCCCCCCCCCCCcEEEccCCccccCchHHhhcCCcccEEEccCc-eeeec-chHhhhhcccCcEE
Q 036331 54 SLSTLRLHVNQLNG-VIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSELELCTI-ILVGL-FLIQLVALHLCLHL 130 (147)
Q Consensus 54 ~L~~l~l~~n~~~~-~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n-~~~~~-~~~~~~~l~~L~~l 130 (147)
.+|++|+++..++. .+-..+..+.+|+.+.+-++.+.+.+...++.-.+|..++++.+ .++.. ..-.+.++..|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47778887777652 22234556778888888888887777777788888888888664 34432 22356778888888
Q ss_pred EeecCccccc
Q 036331 131 RLHRWTVSVL 140 (147)
Q Consensus 131 ~l~~n~i~~~ 140 (147)
+++.+.++.+
T Consensus 266 NlsWc~l~~~ 275 (419)
T KOG2120|consen 266 NLSWCFLFTE 275 (419)
T ss_pred CchHhhccch
Confidence 8888877654
No 68
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.03 E-value=0.0057 Score=25.69 Aligned_cols=20 Identities=20% Similarity=-0.059 Sum_probs=9.8
Q ss_pred ccCcEEEeecCccccccccc
Q 036331 125 HLCLHLRLHRWTVSVLLATA 144 (147)
Q Consensus 125 ~~L~~l~l~~n~i~~~~~~~ 144 (147)
++|++|++++|.|+...+.+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 45566666666665554433
No 69
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.43 E-value=0.028 Score=24.00 Aligned_cols=21 Identities=24% Similarity=0.083 Sum_probs=11.9
Q ss_pred ccCcEEEeecCcccccccccc
Q 036331 125 HLCLHLRLHRWTVSVLLATAL 145 (147)
Q Consensus 125 ~~L~~l~l~~n~i~~~~~~~~ 145 (147)
++|++|++++|.|....+.+|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666665544433
No 70
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.43 E-value=0.028 Score=24.00 Aligned_cols=21 Identities=24% Similarity=0.083 Sum_probs=11.9
Q ss_pred ccCcEEEeecCcccccccccc
Q 036331 125 HLCLHLRLHRWTVSVLLATAL 145 (147)
Q Consensus 125 ~~L~~l~l~~n~i~~~~~~~~ 145 (147)
++|++|++++|.|....+.+|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666665544433
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.73 E-value=0.024 Score=37.38 Aligned_cols=83 Identities=17% Similarity=0.091 Sum_probs=43.8
Q ss_pred CccEEeccccccccCCCcccCCCCCCCEEEcccCcccc--cCCCCCCCCCCCcEEEccCCc-cccCchHHhhcCCcccEE
Q 036331 30 SLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNG--VIPPSIGNLSSLRNLSLFNNG-LYSSIPEEIGYLMSVSEL 106 (147)
Q Consensus 30 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~--~~~~~~~~l~~L~~l~l~~n~-l~~~~~~~~~~~~~L~~l 106 (147)
.++.++.+++.+...--..+.++++++.+.+.+++--+ -+...-+-.++|+.|++++|. |++.--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 45566666666554434455566666666666554211 011111134567777777553 444444455666666666
Q ss_pred EccCce
Q 036331 107 ELCTII 112 (147)
Q Consensus 107 ~l~~n~ 112 (147)
++.+-+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 665543
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.09 E-value=0.084 Score=39.01 Aligned_cols=13 Identities=15% Similarity=-0.077 Sum_probs=6.2
Q ss_pred hcccCcEEEeecC
Q 036331 123 ALHLCLHLRLHRW 135 (147)
Q Consensus 123 ~l~~L~~l~l~~n 135 (147)
.++.|++++++++
T Consensus 293 ~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 293 RCPSLRELDLSGC 305 (482)
T ss_pred hcCcccEEeeecC
Confidence 3444555555543
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=91.72 E-value=0.029 Score=41.42 Aligned_cols=130 Identities=18% Similarity=0.008 Sum_probs=73.4
Q ss_pred CCcccEEEccCCccccc--CCccCCCCCCccEEecccc-ccccCC----CcccCCCCCCCEEEcccCc-ccccCCCCCC-
Q 036331 4 LKSLLQLDLSENQLSGS--IPLSFGNLSSLTMKSPFSN-SLSGSI----PPILGNLKSLSTLRLHVNQ-LNGVIPPSIG- 74 (147)
Q Consensus 4 l~~L~~l~l~~~~~~~~--~~~~~~~~~~L~~l~l~~~-~~~~~~----~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~- 74 (147)
++.|+.+.+.++.-... +-......+.|+.+++.++ ...... ......++.|+.++++++. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45566666666543212 2233456788888888773 111111 1233345788888888877 4432222222
Q ss_pred CCCCCcEEEccCCc-cccCch-HHhhcCCcccEEEccCceeeec--chHhhhhcccCcEEEee
Q 036331 75 NLSSLRNLSLFNNG-LYSSIP-EEIGYLMSVSELELCTIILVGL--FLIQLVALHLCLHLRLH 133 (147)
Q Consensus 75 ~l~~L~~l~l~~n~-l~~~~~-~~~~~~~~L~~l~l~~n~~~~~--~~~~~~~l~~L~~l~l~ 133 (147)
.+++|+++.+.++. ++..-- .....++.|++++++.+..... +......+++++.+.+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence 37789999877776 443222 3345678899999988765421 22234456666655433
No 74
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.51 E-value=0.0024 Score=43.12 Aligned_cols=86 Identities=19% Similarity=0.137 Sum_probs=49.3
Q ss_pred CCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCcccE
Q 036331 26 GNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSE 105 (147)
Q Consensus 26 ~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~ 105 (147)
..+...+.+|++.|++- -....+.-++.+..++++.|.+. ..|..++....++.++...|.. +..|...+..+.++.
T Consensus 39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNH-SQQPKSQKKEPHPKK 115 (326)
T ss_pred hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccch-hhCCccccccCCcch
Confidence 34455566666666554 33444555556666666666665 4555555555556666655554 455655666666666
Q ss_pred EEccCceee
Q 036331 106 LELCTIILV 114 (147)
Q Consensus 106 l~l~~n~~~ 114 (147)
++.-.+++.
T Consensus 116 ~e~k~~~~~ 124 (326)
T KOG0473|consen 116 NEQKKTEFF 124 (326)
T ss_pred hhhccCcch
Confidence 666666544
No 75
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=90.70 E-value=0.094 Score=22.89 Aligned_cols=17 Identities=12% Similarity=-0.195 Sum_probs=10.4
Q ss_pred ccCcEEEeecCcccccc
Q 036331 125 HLCLHLRLHRWTVSVLL 141 (147)
Q Consensus 125 ~~L~~l~l~~n~i~~~~ 141 (147)
++|++|++++|.|...-
T Consensus 2 ~~L~~LdL~~N~i~~~G 18 (28)
T smart00368 2 PSLRELDLSNNKLGDEG 18 (28)
T ss_pred CccCEEECCCCCCCHHH
Confidence 35667777777665443
No 76
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=89.64 E-value=0.26 Score=21.22 Aligned_cols=16 Identities=13% Similarity=0.057 Sum_probs=10.8
Q ss_pred ccCcEEEeecCccccc
Q 036331 125 HLCLHLRLHRWTVSVL 140 (147)
Q Consensus 125 ~~L~~l~l~~n~i~~~ 140 (147)
.+|+.|+++.|.|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4577777777777554
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=88.99 E-value=0.0024 Score=47.63 Aligned_cols=40 Identities=15% Similarity=0.074 Sum_probs=24.1
Q ss_pred CcccEEEccCceeeec----chHhhhhcccCcEEEeecCccccc
Q 036331 101 MSVSELELCTIILVGL----FLIQLVALHLCLHLRLHRWTVSVL 140 (147)
Q Consensus 101 ~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~l~l~~n~i~~~ 140 (147)
..++++++..|.++.. .++.+..++.++++.++.|.+..+
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 4556666666666642 334555566677777777666554
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.58 E-value=0.0036 Score=42.29 Aligned_cols=83 Identities=19% Similarity=0.174 Sum_probs=51.5
Q ss_pred CCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEE
Q 036331 4 LKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLS 83 (147)
Q Consensus 4 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~ 83 (147)
....+.||++.|++. .+-..|.-+..+..++++.|.+. ..|..+.+...+..++...|+.+ ..|.+++..+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 344555666666554 33344444555666677766666 56666666666666666666665 5677777777777777
Q ss_pred ccCCcc
Q 036331 84 LFNNGL 89 (147)
Q Consensus 84 l~~n~l 89 (147)
.-.|.+
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 766654
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.54 E-value=0.09 Score=34.79 Aligned_cols=83 Identities=19% Similarity=0.153 Sum_probs=57.1
Q ss_pred CCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCch-HHhh-cCCcccEEEccCce-eeecchHhhhhcccCc
Q 036331 52 LKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIP-EEIG-YLMSVSELELCTII-LVGLFLIQLVALHLCL 128 (147)
Q Consensus 52 l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~-~~~~-~~~~L~~l~l~~n~-~~~~~~~~~~~l~~L~ 128 (147)
-..++.++-+++.|..+.-+.+.++.+++.+.+.++.-.+.-. .-++ -.++|+.|++++|+ ++..--..+.++++|+
T Consensus 100 ~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 100 NVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred cceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 3457788888888876666777888889999998886432111 1122 34899999999875 5554445777788887
Q ss_pred EEEeec
Q 036331 129 HLRLHR 134 (147)
Q Consensus 129 ~l~l~~ 134 (147)
.+.+..
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 776654
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=81.95 E-value=0.88 Score=34.68 Aligned_cols=63 Identities=22% Similarity=0.210 Sum_probs=33.1
Q ss_pred CCCCCEEEcccCccccc--CCCCCCCCCCCcEEEccCC--ccccCchHHhh--cCCcccEEEccCceeeec
Q 036331 52 LKSLSTLRLHVNQLNGV--IPPSIGNLSSLRNLSLFNN--GLYSSIPEEIG--YLMSVSELELCTIILVGL 116 (147)
Q Consensus 52 l~~L~~l~l~~n~~~~~--~~~~~~~l~~L~~l~l~~n--~l~~~~~~~~~--~~~~L~~l~l~~n~~~~~ 116 (147)
.+.+..+++++|++... +...-...++++.|++++| .+. . ..++. +...|++|-+.+|++...
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~-~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-S-ESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-c-hhhhhhhcCCCHHHeeecCCccccc
Confidence 34555666666666421 1122234566777777777 331 1 11121 234577777777776653
No 81
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=81.23 E-value=0.79 Score=33.86 Aligned_cols=109 Identities=21% Similarity=0.067 Sum_probs=49.9
Q ss_pred CCCCccEEecccccc-ccCCC-cccCCCCCCCEEEcccCccc--ccCCCCCCCCCCCcEEEccCCccccCc-----hHHh
Q 036331 27 NLSSLTMKSPFSNSL-SGSIP-PILGNLKSLSTLRLHVNQLN--GVIPPSIGNLSSLRNLSLFNNGLYSSI-----PEEI 97 (147)
Q Consensus 27 ~~~~L~~l~l~~~~~-~~~~~-~~~~~l~~L~~l~l~~n~~~--~~~~~~~~~l~~L~~l~l~~n~l~~~~-----~~~~ 97 (147)
+.++|+++.+.++.- +..-. .--.+++.|+.+++.++... +.+-+.-.+++.++.+.++.+...... ....
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 446666666666642 10000 01113455666665555432 112222335566666666665532211 0111
Q ss_pred hcCCcccEEEccCceeeec-chHhhhhcccCcEEEeecC
Q 036331 98 GYLMSVSELELCTIILVGL-FLIQLVALHLCLHLRLHRW 135 (147)
Q Consensus 98 ~~~~~L~~l~l~~n~~~~~-~~~~~~~l~~L~~l~l~~n 135 (147)
..+..++.+.+.+++.+.. .-+-+..++.|+.+++-.+
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 2345566666666654421 1123445566666555543
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.09 E-value=1.7 Score=18.64 Aligned_cols=12 Identities=42% Similarity=0.520 Sum_probs=5.6
Q ss_pred CCEEEcccCccc
Q 036331 55 LSTLRLHVNQLN 66 (147)
Q Consensus 55 L~~l~l~~n~~~ 66 (147)
|+.+++++|+++
T Consensus 4 L~~L~vs~N~Lt 15 (26)
T smart00364 4 LKELNVSNNQLT 15 (26)
T ss_pred cceeecCCCccc
Confidence 444444444444
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.53 E-value=2.8 Score=32.13 Aligned_cols=63 Identities=21% Similarity=0.144 Sum_probs=41.1
Q ss_pred CCCCCcEEEccCCcccc--CchHHhhcCCcccEEEccCc--eeeecchHhhh--hcccCcEEEeecCcccc
Q 036331 75 NLSSLRNLSLFNNGLYS--SIPEEIGYLMSVSELELCTI--ILVGLFLIQLV--ALHLCLHLRLHRWTVSV 139 (147)
Q Consensus 75 ~l~~L~~l~l~~n~l~~--~~~~~~~~~~~L~~l~l~~n--~~~~~~~~~~~--~l~~L~~l~l~~n~i~~ 139 (147)
+.+.+..+++++|++.. .+.......|++..|+|++| .+... .++. +...|++|.+.+|++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCcccc
Confidence 45677888899998753 22222345689999999998 33321 2232 23447889999998864
No 84
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=67.89 E-value=5.4 Score=29.74 Aligned_cols=127 Identities=20% Similarity=0.093 Sum_probs=78.4
Q ss_pred CCCcccEEEccCCcc-ccc-CCccCCCCCCccEEecccccccc--CCCcccCCCCCCCEEEcccCcccc-c----CCCCC
Q 036331 3 NLKSLLQLDLSENQL-SGS-IPLSFGNLSSLTMKSPFSNSLSG--SIPPILGNLKSLSTLRLHVNQLNG-V----IPPSI 73 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~-~~~-~~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~l~~L~~l~l~~n~~~~-~----~~~~~ 73 (147)
+..+|+++.+++++. +.. +-.--.+.+.|+.+++.++.... .+.+--.+++.|+.+.++.+.... . +...-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 467888999998863 211 11112467889999998886541 123334578899999998776431 1 12333
Q ss_pred CCCCCCcEEEccCCccc-cCchHHhhcCCcccEEEccCceee--ecchHhhhhcccCcE
Q 036331 74 GNLSSLRNLSLFNNGLY-SSIPEEIGYLMSVSELELCTIILV--GLFLIQLVALHLCLH 129 (147)
Q Consensus 74 ~~l~~L~~l~l~~n~l~-~~~~~~~~~~~~L~~l~l~~n~~~--~~~~~~~~~l~~L~~ 129 (147)
.....+.++.++++... ...-+.+..+++|+.+++.++.-. ..+...-.++|++++
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKV 456 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCcccee
Confidence 45677899999998753 333344567788999888776422 122234445666554
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=65.35 E-value=3.6 Score=17.21 Aligned_cols=17 Identities=18% Similarity=-0.037 Sum_probs=11.9
Q ss_pred cccCcEEEeecCc-cccc
Q 036331 124 LHLCLHLRLHRWT-VSVL 140 (147)
Q Consensus 124 l~~L~~l~l~~n~-i~~~ 140 (147)
+++|++|+++++. |+..
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 4678888888874 5544
No 86
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=47.12 E-value=14 Score=34.09 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=25.6
Q ss_pred EcccCcccccCCCCCCCCCCCcEEEccCCccc
Q 036331 59 RLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLY 90 (147)
Q Consensus 59 ~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~ 90 (147)
+|++|+|+..-+..|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 47788888555567778889999999998875
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=36.85 E-value=21 Score=33.16 Aligned_cols=33 Identities=27% Similarity=0.201 Sum_probs=27.6
Q ss_pred eccccccccCCCcccCCCCCCCEEEcccCcccc
Q 036331 35 SPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNG 67 (147)
Q Consensus 35 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 67 (147)
||++|+++...+..|..+++|+.++|.+|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 578899986666788889999999999998763
No 88
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=30.36 E-value=31 Score=14.75 Aligned_cols=15 Identities=13% Similarity=-0.031 Sum_probs=10.8
Q ss_pred hhhhcccCcEEEeec
Q 036331 120 QLVALHLCLHLRLHR 134 (147)
Q Consensus 120 ~~~~l~~L~~l~l~~ 134 (147)
.+..+|+|+.||...
T Consensus 8 Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 8 VIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHCCccceecccc
Confidence 566788888887654
Done!