Query 036331
Match_columns 147
No_of_seqs 114 out of 1460
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 19:58:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036331.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036331hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 2.4E-23 8.1E-28 144.2 10.2 135 4-139 75-211 (313)
2 3rgz_A Protein brassinosteroid 99.9 2.7E-23 9.1E-28 158.6 11.1 92 52-143 631-722 (768)
3 3m19_A Variable lymphocyte rec 99.9 2.2E-22 7.6E-27 135.3 13.6 139 2-140 56-194 (251)
4 3rgz_A Protein brassinosteroid 99.9 6.8E-23 2.3E-27 156.3 12.2 145 2-146 415-559 (768)
5 3rfs_A Internalin B, repeat mo 99.9 3.7E-22 1.3E-26 135.7 13.5 141 2-142 82-222 (272)
6 2v9t_B SLIT homolog 2 protein 99.9 2E-22 6.9E-27 133.2 11.8 140 5-144 32-171 (220)
7 1ogq_A PGIP-2, polygalacturona 99.9 8.1E-23 2.8E-27 141.5 9.9 139 2-141 98-237 (313)
8 3e6j_A Variable lymphocyte rec 99.9 1E-21 3.4E-26 130.6 13.5 137 5-142 40-176 (229)
9 3m19_A Variable lymphocyte rec 99.9 8.7E-22 3E-26 132.4 13.3 141 5-145 35-175 (251)
10 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-21 4.9E-26 133.4 13.4 139 3-141 103-241 (285)
11 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-21 4.7E-26 133.5 13.3 138 3-140 54-192 (285)
12 2v70_A SLIT-2, SLIT homolog 2 99.9 4.3E-22 1.5E-26 131.7 10.3 139 6-144 33-172 (220)
13 4fcg_A Uncharacterized protein 99.9 1.5E-22 5.2E-27 141.0 8.4 115 28-144 182-296 (328)
14 2o6q_A Variable lymphocyte rec 99.9 2.6E-21 8.8E-26 131.4 13.8 138 3-140 59-196 (270)
15 3rfs_A Internalin B, repeat mo 99.9 2E-21 6.7E-26 132.1 12.5 142 2-145 60-201 (272)
16 2o6s_A Variable lymphocyte rec 99.9 4E-21 1.4E-25 125.8 13.4 139 4-142 27-165 (208)
17 4fcg_A Uncharacterized protein 99.9 6.3E-22 2.2E-26 137.9 8.3 138 3-144 102-248 (328)
18 2o6q_A Variable lymphocyte rec 99.9 9.2E-21 3.2E-25 128.6 13.8 141 2-142 82-222 (270)
19 2z66_A Variable lymphocyte rec 99.9 2.8E-21 9.7E-26 133.1 11.1 137 4-140 125-263 (306)
20 2z66_A Variable lymphocyte rec 99.9 4.3E-21 1.5E-25 132.2 11.6 144 2-145 98-243 (306)
21 2z62_A TOLL-like receptor 4, v 99.9 1.5E-20 5.2E-25 127.8 13.8 139 2-140 49-192 (276)
22 3v47_A TOLL-like receptor 5B a 99.9 4.4E-21 1.5E-25 138.4 11.1 138 5-142 275-412 (455)
23 1w8a_A SLIT protein; signaling 99.9 6E-21 2.1E-25 123.7 10.4 135 7-144 10-145 (192)
24 4g8a_A TOLL-like receptor 4; l 99.8 7.8E-21 2.7E-25 141.4 11.3 140 6-145 53-193 (635)
25 2id5_A Lingo-1, leucine rich r 99.8 2.1E-20 7.2E-25 135.7 12.7 141 2-142 53-193 (477)
26 2z62_A TOLL-like receptor 4, v 99.8 2.2E-20 7.5E-25 127.0 12.1 140 6-145 29-169 (276)
27 1p9a_G Platelet glycoprotein I 99.8 2.9E-20 9.9E-25 127.5 12.4 133 3-138 53-185 (290)
28 3vq2_A TLR4, TOLL-like recepto 99.8 3.5E-20 1.2E-24 137.9 13.2 136 6-141 33-169 (606)
29 3vq2_A TLR4, TOLL-like recepto 99.8 2.4E-20 8.3E-25 138.7 12.1 145 1-145 52-201 (606)
30 4eco_A Uncharacterized protein 99.8 6.5E-21 2.2E-25 142.9 9.0 121 21-142 198-347 (636)
31 2ell_A Acidic leucine-rich nuc 99.8 1.7E-20 5.8E-25 119.0 9.1 137 3-141 22-163 (168)
32 2wfh_A SLIT homolog 2 protein 99.8 5.3E-20 1.8E-24 119.4 11.6 132 8-143 13-144 (193)
33 2v9t_B SLIT homolog 2 protein 99.8 7.7E-20 2.6E-24 120.8 12.1 135 8-145 14-148 (220)
34 4ezg_A Putative uncharacterize 99.8 3.3E-20 1.1E-24 120.6 10.1 132 4-140 43-174 (197)
35 2xot_A Amphoterin-induced prot 99.8 4.8E-20 1.6E-24 129.9 11.5 136 6-141 40-179 (361)
36 1p9a_G Platelet glycoprotein I 99.8 1.2E-19 4E-24 124.5 13.1 138 2-141 74-211 (290)
37 3t6q_A CD180 antigen; protein- 99.8 5.6E-20 1.9E-24 136.8 12.3 145 1-145 53-199 (606)
38 3t6q_A CD180 antigen; protein- 99.8 7.4E-20 2.5E-24 136.1 12.7 139 3-142 423-564 (606)
39 3v47_A TOLL-like receptor 5B a 99.8 5.2E-20 1.8E-24 132.7 11.5 141 5-145 30-174 (455)
40 2z63_A TOLL-like receptor 4, v 99.8 2.9E-20 9.8E-25 137.3 10.3 142 2-143 393-536 (570)
41 2z63_A TOLL-like receptor 4, v 99.8 1.2E-19 4.1E-24 134.0 13.6 143 2-144 49-196 (570)
42 4ezg_A Putative uncharacterize 99.8 1E-19 3.5E-24 118.3 11.5 133 2-139 63-195 (197)
43 4eco_A Uncharacterized protein 99.8 3.8E-21 1.3E-25 144.2 5.3 135 2-138 203-366 (636)
44 2je0_A Acidic leucine-rich nuc 99.8 3.1E-20 1E-24 115.7 8.1 128 4-133 16-148 (149)
45 2o6s_A Variable lymphocyte rec 99.8 5.6E-20 1.9E-24 120.3 9.6 138 1-145 48-185 (208)
46 2id5_A Lingo-1, leucine rich r 99.8 7.8E-20 2.7E-24 132.7 11.1 140 5-144 32-171 (477)
47 1wwl_A Monocyte differentiatio 99.8 4E-20 1.4E-24 127.9 8.8 138 3-141 93-244 (312)
48 2xot_A Amphoterin-induced prot 99.8 1.6E-19 5.6E-24 127.2 11.5 139 3-142 62-206 (361)
49 2v70_A SLIT-2, SLIT homolog 2 99.8 2.9E-19 9.8E-24 118.1 11.9 136 7-145 13-149 (220)
50 2o6r_A Variable lymphocyte rec 99.8 5.8E-19 2E-23 112.8 12.4 133 7-142 9-141 (177)
51 3e6j_A Variable lymphocyte rec 99.8 7.1E-19 2.4E-23 116.8 13.0 135 7-145 21-155 (229)
52 4g8a_A TOLL-like receptor 4; l 99.8 2.3E-19 8E-24 133.5 11.7 143 2-144 442-586 (635)
53 3j0a_A TOLL-like receptor 5; m 99.8 2.7E-19 9.1E-24 137.8 12.0 140 5-144 24-167 (844)
54 3zyj_A Leucine-rich repeat-con 99.8 5.2E-19 1.8E-23 127.4 12.2 64 3-66 86-149 (440)
55 3zyi_A Leucine-rich repeat-con 99.8 6.5E-19 2.2E-23 127.3 12.7 140 2-141 96-282 (452)
56 1xku_A Decorin; proteoglycan, 99.8 4.4E-19 1.5E-23 123.4 11.4 140 2-145 142-283 (330)
57 2z80_A TOLL-like receptor 2, v 99.8 9.5E-20 3.2E-24 127.8 8.0 135 2-137 73-210 (353)
58 1ziw_A TOLL-like receptor 3; i 99.8 2.2E-19 7.6E-24 135.2 10.3 141 3-143 47-189 (680)
59 2z81_A CD282 antigen, TOLL-lik 99.8 1E-19 3.5E-24 133.9 8.2 140 5-144 26-167 (549)
60 3oja_B Anopheles plasmodium-re 99.8 5.8E-19 2E-23 131.5 12.0 87 3-89 97-183 (597)
61 3zyj_A Leucine-rich repeat-con 99.8 4.6E-19 1.6E-23 127.7 11.0 138 2-141 133-295 (440)
62 3zyi_A Leucine-rich repeat-con 99.8 1.1E-18 3.7E-23 126.1 12.7 118 25-144 192-309 (452)
63 2z80_A TOLL-like receptor 2, v 99.8 2.3E-19 8E-24 125.9 8.1 140 5-145 52-194 (353)
64 2z7x_B TOLL-like receptor 1, v 99.8 4.1E-19 1.4E-23 130.1 9.5 140 2-142 321-485 (520)
65 3o6n_A APL1; leucine-rich repe 99.8 3.5E-18 1.2E-22 121.2 14.1 89 2-90 90-178 (390)
66 2xwt_C Thyrotropin receptor; s 99.8 4.2E-19 1.4E-23 118.4 8.6 131 6-138 32-169 (239)
67 3j0a_A TOLL-like receptor 5; m 99.8 1.2E-18 4E-23 134.3 12.1 143 1-143 44-192 (844)
68 4ecn_A Leucine-rich repeat pro 99.8 1.6E-19 5.5E-24 139.0 7.3 117 21-138 440-586 (876)
69 2xwt_C Thyrotropin receptor; s 99.8 3.9E-19 1.3E-23 118.6 8.3 139 2-141 52-221 (239)
70 3o6n_A APL1; leucine-rich repe 99.8 6.3E-19 2.2E-23 125.1 9.7 134 5-140 45-180 (390)
71 4ecn_A Leucine-rich repeat pro 99.8 5.3E-20 1.8E-24 141.7 4.4 134 2-138 445-608 (876)
72 1ziw_A TOLL-like receptor 3; i 99.8 3.1E-18 1.1E-22 128.9 13.9 141 2-142 477-626 (680)
73 1wwl_A Monocyte differentiatio 99.8 1.9E-19 6.4E-24 124.5 6.4 140 2-143 118-270 (312)
74 3oja_B Anopheles plasmodium-re 99.8 7.9E-19 2.7E-23 130.8 9.8 112 4-115 74-185 (597)
75 2z81_A CD282 antigen, TOLL-lik 99.8 5.1E-19 1.7E-23 130.2 8.6 139 1-139 46-210 (549)
76 2z7x_B TOLL-like receptor 1, v 99.8 1.3E-18 4.3E-23 127.5 10.4 133 5-139 302-458 (520)
77 2ft3_A Biglycan; proteoglycan, 99.8 1.7E-18 5.7E-23 120.6 10.1 140 5-145 123-284 (332)
78 1a9n_A U2A', U2A'; complex (nu 99.8 1.4E-18 4.7E-23 111.0 8.7 133 3-140 17-155 (176)
79 1xku_A Decorin; proteoglycan, 99.8 1.8E-17 6.1E-22 115.2 14.1 132 5-139 52-185 (330)
80 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2E-18 6.7E-23 127.7 9.8 140 2-142 350-514 (562)
81 4b8c_D Glucose-repressible alc 99.8 2.1E-19 7.2E-24 136.5 4.3 138 2-143 221-359 (727)
82 2ft3_A Biglycan; proteoglycan, 99.8 3E-18 1E-22 119.3 9.2 44 95-138 211-254 (332)
83 1h6t_A Internalin B; cell adhe 99.8 9.6E-18 3.3E-22 115.0 11.5 127 3-139 66-192 (291)
84 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1E-17 3.4E-22 123.9 11.9 132 5-142 52-188 (562)
85 4fmz_A Internalin; leucine ric 99.8 7.9E-18 2.7E-22 117.6 10.6 133 2-142 196-328 (347)
86 1h6u_A Internalin H; cell adhe 99.7 1.9E-17 6.4E-22 114.4 11.8 103 4-114 62-164 (308)
87 1h6u_A Internalin H; cell adhe 99.7 1.9E-17 6.5E-22 114.4 11.8 128 2-139 82-209 (308)
88 3oja_A Leucine-rich immune mol 99.7 4.2E-18 1.4E-22 124.3 9.0 136 4-141 33-185 (487)
89 3oja_A Leucine-rich immune mol 99.7 2E-18 7E-23 125.9 7.3 132 4-139 119-251 (487)
90 2je0_A Acidic leucine-rich nuc 99.7 2.1E-17 7.2E-22 102.7 10.5 114 27-142 15-130 (149)
91 1w8a_A SLIT protein; signaling 99.7 1.6E-17 5.5E-22 107.5 10.3 113 6-118 30-143 (192)
92 4glp_A Monocyte differentiatio 99.7 3.5E-18 1.2E-22 118.0 7.6 111 27-138 143-264 (310)
93 3o53_A Protein LRIM1, AGAP0063 99.7 3.2E-18 1.1E-22 118.6 7.2 132 4-139 119-251 (317)
94 1xeu_A Internalin C; cellular 99.7 2.2E-17 7.5E-22 111.7 11.1 128 4-140 40-187 (263)
95 1h6t_A Internalin B; cell adhe 99.7 2.5E-17 8.5E-22 113.0 11.2 131 1-141 86-216 (291)
96 4glp_A Monocyte differentiatio 99.7 5.4E-18 1.8E-22 117.1 7.8 139 5-143 91-242 (310)
97 4fmz_A Internalin; leucine ric 99.7 4.1E-17 1.4E-21 114.0 12.3 129 2-138 218-346 (347)
98 1xeu_A Internalin C; cellular 99.7 2.4E-17 8E-22 111.6 10.0 124 5-139 19-142 (263)
99 1m9s_A Internalin B; cell inva 99.7 4.7E-17 1.6E-21 121.4 11.7 127 3-139 63-189 (605)
100 2wfh_A SLIT homolog 2 protein 99.7 7.8E-17 2.7E-21 104.4 11.3 111 5-116 31-141 (193)
101 2o6r_A Variable lymphocyte rec 99.7 1.2E-16 4.2E-21 102.0 11.5 115 4-118 27-141 (177)
102 4b8c_D Glucose-repressible alc 99.7 4.3E-18 1.5E-22 129.4 5.3 121 21-145 216-336 (727)
103 2ell_A Acidic leucine-rich nuc 99.7 9.7E-17 3.3E-21 101.6 10.1 114 27-142 22-137 (168)
104 2ast_B S-phase kinase-associat 99.7 1.6E-18 5.5E-23 120.6 1.7 138 3-140 91-238 (336)
105 1m9s_A Internalin B; cell inva 99.7 9.3E-17 3.2E-21 119.8 11.3 129 2-140 84-212 (605)
106 3g39_A Variable lymphocyte rec 99.7 1.4E-16 4.8E-21 101.3 10.1 109 6-117 10-118 (170)
107 1dce_A Protein (RAB geranylger 99.7 9.1E-17 3.1E-21 119.1 10.6 121 6-131 442-566 (567)
108 3o53_A Protein LRIM1, AGAP0063 99.7 1.4E-17 4.7E-22 115.4 5.7 137 3-141 32-185 (317)
109 1o6v_A Internalin A; bacterial 99.7 1.4E-16 4.8E-21 115.5 11.1 128 4-141 242-369 (466)
110 1o6v_A Internalin A; bacterial 99.7 2.2E-16 7.5E-21 114.5 10.7 129 2-140 262-390 (466)
111 2r9u_A Variable lymphocyte rec 99.7 4.7E-16 1.6E-20 99.2 10.2 107 8-117 15-121 (174)
112 3g39_A Variable lymphocyte rec 99.7 8.6E-16 2.9E-20 97.6 11.2 110 30-142 10-119 (170)
113 1ds9_A Outer arm dynein; leuci 99.7 6.8E-19 2.3E-23 114.4 -3.4 134 4-142 17-157 (198)
114 2ast_B S-phase kinase-associat 99.7 7.3E-18 2.5E-22 117.3 0.9 135 2-136 115-258 (336)
115 2r9u_A Variable lymphocyte rec 99.6 3.3E-15 1.1E-19 95.3 11.2 109 31-142 14-122 (174)
116 1dce_A Protein (RAB geranylger 99.6 1E-15 3.6E-20 113.4 9.5 108 30-142 442-550 (567)
117 3bz5_A Internalin-J, INLJ; leu 99.6 4.5E-15 1.6E-19 107.5 12.5 127 2-141 103-249 (457)
118 2ca6_A RAN GTPase-activating p 99.6 1.1E-17 3.8E-22 118.6 -2.2 15 4-18 93-107 (386)
119 2ca6_A RAN GTPase-activating p 99.6 1E-16 3.6E-21 113.6 2.8 138 5-142 159-320 (386)
120 1a9n_A U2A', U2A'; complex (nu 99.6 4E-15 1.4E-19 94.9 9.9 114 24-141 14-129 (176)
121 3goz_A Leucine-rich repeat-con 99.6 4.8E-17 1.6E-21 114.6 0.9 14 126-139 197-210 (362)
122 3cvr_A Invasion plasmid antige 99.6 2.4E-15 8.1E-20 111.5 9.9 122 6-144 121-249 (571)
123 3goz_A Leucine-rich repeat-con 99.6 1.2E-16 4.1E-21 112.5 2.9 140 4-143 21-185 (362)
124 1ds9_A Outer arm dynein; leuci 99.6 2.4E-18 8E-23 111.9 -6.0 131 3-140 46-187 (198)
125 3bz5_A Internalin-J, INLJ; leu 99.6 1.2E-14 4.1E-19 105.3 12.4 78 3-89 62-139 (457)
126 1z7x_W Ribonuclease inhibitor; 99.6 7.7E-17 2.6E-21 116.3 -1.7 137 4-140 255-413 (461)
127 4ay9_X Follicle-stimulating ho 99.6 1.3E-14 4.4E-19 101.7 9.2 141 3-144 52-221 (350)
128 2ifg_A High affinity nerve gro 99.6 1.1E-14 3.8E-19 101.8 7.9 105 9-116 12-118 (347)
129 3g06_A SSPH2 (leucine-rich rep 99.6 4.6E-14 1.6E-18 105.6 11.5 83 53-144 221-303 (622)
130 3cvr_A Invasion plasmid antige 99.5 5.9E-14 2E-18 104.1 11.0 114 5-138 80-193 (571)
131 4ay9_X Follicle-stimulating ho 99.5 3.8E-14 1.3E-18 99.4 9.2 140 5-145 30-174 (350)
132 1jl5_A Outer protein YOPM; leu 99.5 8E-14 2.7E-18 100.9 11.1 121 5-139 131-251 (454)
133 2ifg_A High affinity nerve gro 99.5 4.3E-14 1.5E-18 98.8 8.7 107 33-142 12-120 (347)
134 1z7x_W Ribonuclease inhibitor; 99.5 1.8E-15 6.2E-20 109.2 0.3 14 125-138 370-383 (461)
135 1jl5_A Outer protein YOPM; leu 99.5 3.6E-13 1.2E-17 97.5 12.2 103 1-115 149-251 (454)
136 3g06_A SSPH2 (leucine-rich rep 99.4 1.2E-12 4E-17 98.1 10.3 53 6-66 62-114 (622)
137 3un9_A NLR family member X1; l 99.4 1.9E-14 6.6E-19 101.8 -1.8 139 5-143 101-257 (372)
138 3sb4_A Hypothetical leucine ri 99.4 3E-12 1E-16 89.0 8.9 92 52-145 225-317 (329)
139 3ogk_B Coronatine-insensitive 99.3 2E-13 6.8E-18 101.2 0.3 138 4-141 377-529 (592)
140 3un9_A NLR family member X1; l 99.3 3.1E-14 1.1E-18 100.7 -4.2 139 5-143 72-229 (372)
141 3sb4_A Hypothetical leucine ri 99.3 6E-11 2E-15 82.4 11.0 103 28-132 225-328 (329)
142 3ogk_B Coronatine-insensitive 99.1 4.1E-11 1.4E-15 88.9 4.1 63 3-65 162-232 (592)
143 2p1m_B Transport inhibitor res 99.1 5E-12 1.7E-16 93.8 -2.2 91 49-140 428-521 (594)
144 2ra8_A Uncharacterized protein 99.1 1.4E-10 4.9E-15 81.7 4.8 138 4-144 171-326 (362)
145 2p1m_B Transport inhibitor res 99.0 1.6E-10 5.5E-15 85.7 2.6 132 4-135 104-245 (594)
146 4fdw_A Leucine rich hypothetic 99.0 4.9E-09 1.7E-13 74.9 10.1 141 1-145 176-342 (401)
147 4fdw_A Leucine rich hypothetic 98.9 1E-08 3.5E-13 73.2 10.3 137 2-145 223-365 (401)
148 1io0_A Tropomodulin; LRR prote 98.9 5.8E-10 2E-14 71.6 1.7 116 25-140 32-166 (185)
149 2ra8_A Uncharacterized protein 98.8 3.7E-09 1.3E-13 74.5 3.3 138 3-143 137-297 (362)
150 1io0_A Tropomodulin; LRR prote 98.7 1E-09 3.5E-14 70.4 -0.2 114 2-115 33-165 (185)
151 3rw6_A Nuclear RNA export fact 98.7 1.1E-08 3.9E-13 69.1 4.4 79 51-131 168-257 (267)
152 3e4g_A ATP synthase subunit S, 98.6 5.7E-08 1.9E-12 61.6 5.0 84 53-136 61-150 (176)
153 3rw6_A Nuclear RNA export fact 98.6 4.5E-08 1.5E-12 66.2 4.8 81 26-107 167-257 (267)
154 3e4g_A ATP synthase subunit S, 98.4 1.5E-07 5.2E-12 59.6 2.5 93 20-112 52-150 (176)
155 4h09_A Hypothetical leucine ri 98.3 1E-05 3.5E-10 57.0 10.2 118 24-145 235-352 (379)
156 4gt6_A Cell surface protein; l 98.2 1.5E-05 5.2E-10 56.5 10.0 107 25-135 261-367 (394)
157 4fs7_A Uncharacterized protein 98.2 2.1E-05 7.3E-10 55.8 10.4 105 25-135 272-376 (394)
158 4gt6_A Cell surface protein; l 98.0 0.00017 5.7E-09 51.2 12.0 130 2-138 262-391 (394)
159 4h09_A Hypothetical leucine ri 97.8 0.00043 1.5E-08 48.7 11.5 117 25-145 213-329 (379)
160 4fs7_A Uncharacterized protein 97.7 0.00063 2.1E-08 48.2 10.7 114 25-145 249-362 (394)
161 3rfe_A Platelet glycoprotein I 97.5 9.1E-05 3.1E-09 44.6 3.6 57 57-115 12-69 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00014 4.9E-09 46.8 3.0 114 26-139 38-171 (197)
163 3rfe_A Platelet glycoprotein I 97.1 0.0017 6E-08 38.9 5.8 57 32-90 11-68 (130)
164 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00055 1.9E-08 44.1 3.1 88 48-135 36-136 (197)
165 2lz0_A Uncharacterized protein 76.0 7.1 0.00024 21.8 4.7 39 46-85 13-51 (100)
166 2lz0_A Uncharacterized protein 47.2 35 0.0012 18.9 6.7 48 16-64 7-54 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=2.4e-23 Score=144.20 Aligned_cols=135 Identities=27% Similarity=0.412 Sum_probs=62.7
Q ss_pred CCcccEEEccC-CcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEE
Q 036331 4 LKSLLQLDLSE-NQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNL 82 (147)
Q Consensus 4 l~~L~~l~l~~-~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l 82 (147)
+++|++|++++ |.+.+.+|..+.++++|+++++++|.+++..|..+..+++|+++++++|.+.+..|..+..+++|+++
T Consensus 75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 154 (313)
T 1ogq_A 75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154 (313)
T ss_dssp CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeE
Confidence 44444444442 44444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred EccCCccccCchHHhhcCC-cccEEEccCceeeecchHhhhhcccCcEEEeecCcccc
Q 036331 83 SLFNNGLYSSIPEEIGYLM-SVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSV 139 (147)
Q Consensus 83 ~l~~n~l~~~~~~~~~~~~-~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~ 139 (147)
++++|.+.+.+|..+..++ +|+.+++++|.+.+.+|..+..+. |++|++++|.+++
T Consensus 155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~ 211 (313)
T 1ogq_A 155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG 211 (313)
T ss_dssp ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE
T ss_pred ECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC
Confidence 4444444444444444443 444444444444444444444433 4444444444443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=2.7e-23 Score=158.57 Aligned_cols=92 Identities=29% Similarity=0.364 Sum_probs=66.9
Q ss_pred CCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEE
Q 036331 52 LKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLR 131 (147)
Q Consensus 52 l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~ 131 (147)
+++|+++++++|.+++..|..++.+++|+++++++|.+++.+|..++.+++|+.|++++|.++|.+|..+..+++|++|+
T Consensus 631 l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 34566666666666666666677777777777777777777777777777777777777777777777777777777777
Q ss_pred eecCcccccccc
Q 036331 132 LHRWTVSVLLAT 143 (147)
Q Consensus 132 l~~n~i~~~~~~ 143 (147)
+++|.++|.+|.
T Consensus 711 ls~N~l~g~iP~ 722 (768)
T 3rgz_A 711 LSNNNLSGPIPE 722 (768)
T ss_dssp CCSSEEEEECCS
T ss_pred CcCCcccccCCC
Confidence 777777777664
No 3
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=2.2e-22 Score=135.32 Aligned_cols=139 Identities=24% Similarity=0.180 Sum_probs=98.4
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
.++++|++|++++|.+.+..+..+.++++|++|++++|.++...+..+..+++|+++++++|.+++..+..+..+++|++
T Consensus 56 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 135 (251)
T 3m19_A 56 RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccE
Confidence 45667777777777777555555677777777777777777555566677777777777777777544445667777777
Q ss_pred EEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccc
Q 036331 82 LSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVL 140 (147)
Q Consensus 82 l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~ 140 (147)
+++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus 136 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred EECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 77777777554444667777777777777777766666777777777777777777665
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=6.8e-23 Score=156.32 Aligned_cols=145 Identities=35% Similarity=0.432 Sum_probs=123.5
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
.++++|++|++++|.+.+..|..+.++++|+.+++++|.+.+..|..+..+++|+++++++|.+.+..|..+..+++|++
T Consensus 415 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 494 (768)
T 3rgz_A 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494 (768)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCE
Confidence 35677888888888887777777888888888888888888778888888888888888888888788888888888999
Q ss_pred EEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccccccccc
Q 036331 82 LSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLATALL 146 (147)
Q Consensus 82 l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~~ 146 (147)
+++++|.+.+.+|.+++.+++|+.|++++|.+.+.+|..+..+++|++|++++|.++|.+|.+++
T Consensus 495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence 99999998888888888899999999999999988888899999999999999999888877653
No 5
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=3.7e-22 Score=135.71 Aligned_cols=141 Identities=23% Similarity=0.160 Sum_probs=97.7
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
.++++|++|++++|.+.+..+..+.++++|+++++++|.+++..+..+..+++|+++++++|.+++..+..+..+++|++
T Consensus 82 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 161 (272)
T 3rfs_A 82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE 161 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCE
Confidence 45667777777777776444445667777777777777777555555667777777777777777544455667777777
Q ss_pred EEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccccc
Q 036331 82 LSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLA 142 (147)
Q Consensus 82 l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~ 142 (147)
+++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.++
T Consensus 162 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 162 LDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 7777777765555556677777777777777777666667777777777777777766554
No 6
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.89 E-value=2e-22 Score=133.23 Aligned_cols=140 Identities=19% Similarity=0.142 Sum_probs=125.5
Q ss_pred CcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEc
Q 036331 5 KSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSL 84 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l 84 (147)
++++.|++++|.+.+..+..+..+++|+.|++++|.+++..|..+..+++|+++++++|.++...+..+..+++|+++++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 47899999999998655567899999999999999999777999999999999999999999555556788999999999
Q ss_pred cCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccccccc
Q 036331 85 FNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLATA 144 (147)
Q Consensus 85 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~ 144 (147)
++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+++++++|++.+.+...
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence 999998877888999999999999999999888888999999999999999998866543
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=8.1e-23 Score=141.54 Aligned_cols=139 Identities=24% Similarity=0.366 Sum_probs=96.6
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCC-CCc
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLS-SLR 80 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~-~L~ 80 (147)
.++++|++|++++|.+.+..|..+.++++|+++++++|.+.+..|..+..+++|+++++++|.+++..|..+..+. +|+
T Consensus 98 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~ 177 (313)
T 1ogq_A 98 AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177 (313)
T ss_dssp GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC
T ss_pred hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc
Confidence 4567777777777777766777777777777777777777766777777777777777777777766677777666 777
Q ss_pred EEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccccc
Q 036331 81 NLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLL 141 (147)
Q Consensus 81 ~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~ 141 (147)
++++++|.+.+..|..+..+. |+.|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus 178 ~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 237 (313)
T 1ogq_A 178 SMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237 (313)
T ss_dssp EEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred EEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec
Confidence 777777777666666666655 666666666666666666666666666666666555443
No 8
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.88 E-value=1e-21 Score=130.61 Aligned_cols=137 Identities=23% Similarity=0.170 Sum_probs=123.9
Q ss_pred CcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEc
Q 036331 5 KSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSL 84 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l 84 (147)
++|++|++++|.+.+..+..+.++++|+.|++++|.+....+..+..+++|+++++++|.+++..+..+..+++|+++++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 57999999999999777888999999999999999998555567789999999999999999666667889999999999
Q ss_pred cCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccccc
Q 036331 85 FNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLA 142 (147)
Q Consensus 85 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~ 142 (147)
++|.+. .+|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++++.++
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 999995 788889999999999999999998777789999999999999999988764
No 9
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=8.7e-22 Score=132.40 Aligned_cols=141 Identities=25% Similarity=0.172 Sum_probs=125.5
Q ss_pred CcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEc
Q 036331 5 KSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSL 84 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l 84 (147)
+.++.|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|+++++++|.+++..+..+..+++|+++++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 46899999999999777777999999999999999999777788899999999999999999666677889999999999
Q ss_pred cCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccccccccc
Q 036331 85 FNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLATAL 145 (147)
Q Consensus 85 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 145 (147)
++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+.+|
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 175 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH
Confidence 9999976555567889999999999999998877789999999999999999998776544
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=1.4e-21 Score=133.44 Aligned_cols=139 Identities=25% Similarity=0.180 Sum_probs=75.4
Q ss_pred CCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEE
Q 036331 3 NLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNL 82 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l 82 (147)
++++|++|++++|.+.+..+..+.++++|+++++++|.+....+..+..+++|+++++++|.+++..+..+..+++|+++
T Consensus 103 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 182 (285)
T 1ozn_A 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182 (285)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEE
Confidence 34455555555555543334444555555555555555553333345555555555555555553333345555555556
Q ss_pred EccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccccc
Q 036331 83 SLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLL 141 (147)
Q Consensus 83 ~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~ 141 (147)
++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++.+.+
T Consensus 183 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 241 (285)
T 1ozn_A 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (285)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred ECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCC
Confidence 66555555544555555666666666666666555555666666666666666665543
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=1.4e-21 Score=133.52 Aligned_cols=138 Identities=24% Similarity=0.184 Sum_probs=61.1
Q ss_pred CCCcccEEEccCCcccccCCccCCCCCCccEEeccccc-cccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 3 NLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNS-LSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
++++|++|++++|.+.+..+..+.++++|+++++++|. +....+..+..+++|+++++++|.+.+..+..+..+++|++
T Consensus 54 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 133 (285)
T 1ozn_A 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCE
Confidence 34455555555554443334444444555555555444 33222444444444444444444444333344444444444
Q ss_pred EEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccc
Q 036331 82 LSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVL 140 (147)
Q Consensus 82 l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~ 140 (147)
+++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus 134 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred EECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 44444444332222334444444444444444433333344444444444444444433
No 12
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.88 E-value=4.3e-22 Score=131.67 Aligned_cols=139 Identities=19% Similarity=0.106 Sum_probs=124.4
Q ss_pred cccEEEccCCcccccCCc-cCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEc
Q 036331 6 SLLQLDLSENQLSGSIPL-SFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSL 84 (147)
Q Consensus 6 ~L~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l 84 (147)
.++.|++++|.+.+..+. .+.++++|+.|++++|.+++..+..+..+++|+++++++|.+++..+..+..+++|+++++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 578999999999865454 4789999999999999999777778999999999999999999766677889999999999
Q ss_pred cCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccccccc
Q 036331 85 FNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLATA 144 (147)
Q Consensus 85 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~ 144 (147)
++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++.+...
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence 999998877888999999999999999999988899999999999999999999876543
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=1.5e-22 Score=141.01 Aligned_cols=115 Identities=20% Similarity=0.213 Sum_probs=64.8
Q ss_pred CCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCcccEEE
Q 036331 28 LSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSELE 107 (147)
Q Consensus 28 ~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~ 107 (147)
+++|++|++++|.++ .+|..+..+++|+++++++|.+. ..|..+..+++|+++++++|.+.+.+|..+..+++|+.|+
T Consensus 182 l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp STTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred CCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 444444444444444 44444555555555555555555 2444455555566666665555555555555556666666
Q ss_pred ccCceeeecchHhhhhcccCcEEEeecCccccccccc
Q 036331 108 LCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLATA 144 (147)
Q Consensus 108 l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~ 144 (147)
+++|.+.+.+|..+..+++|++|++++|.+.+.+|..
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 6665555555556666666666666666666655544
No 14
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=2.6e-21 Score=131.37 Aligned_cols=138 Identities=27% Similarity=0.202 Sum_probs=65.1
Q ss_pred CCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEE
Q 036331 3 NLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNL 82 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l 82 (147)
++++|++|++++|.+....+..+.++++|+++++++|.+....+..+..+++|+++++++|.+++..+..+..+++|+++
T Consensus 59 ~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 138 (270)
T 2o6q_A 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL 138 (270)
T ss_dssp SCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEE
Confidence 44555555555555542222223445555555555555553333344445555555555555543333344445555555
Q ss_pred EccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccc
Q 036331 83 SLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVL 140 (147)
Q Consensus 83 ~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~ 140 (147)
++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus 139 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 5555544332222344445555555555544444333444445555555555544443
No 15
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=2e-21 Score=132.12 Aligned_cols=142 Identities=25% Similarity=0.202 Sum_probs=123.5
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
..+++|++|++++|.+.+ + +.+.++++|++|++++|.+++..+..+..+++|+++++++|.+++..+..+..+++|++
T Consensus 60 ~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 60 QYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp GGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence 457899999999999874 3 47888999999999999999666777889999999999999999666667889999999
Q ss_pred EEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccccccccc
Q 036331 82 LSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLATAL 145 (147)
Q Consensus 82 l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 145 (147)
+++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..|
T Consensus 138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (272)
T 3rfs_A 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVF 201 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred EECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHH
Confidence 9999999976666667889999999999999998877788999999999999999998766443
No 16
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=4e-21 Score=125.78 Aligned_cols=139 Identities=24% Similarity=0.160 Sum_probs=120.6
Q ss_pred CCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEE
Q 036331 4 LKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLS 83 (147)
Q Consensus 4 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~ 83 (147)
.+++++|++++|.+.+..+..+.++++|+++++++|.++...+..+..+++|+++++++|.+++..+..+..+++|++++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 45799999999999855555678999999999999999966566678999999999999999965556678999999999
Q ss_pred ccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccccc
Q 036331 84 LFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLA 142 (147)
Q Consensus 84 l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~ 142 (147)
+++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+++++++|.+.+..+
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 99999976666667889999999999999998777778999999999999999887654
No 17
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=6.3e-22 Score=137.90 Aligned_cols=138 Identities=20% Similarity=0.259 Sum_probs=88.1
Q ss_pred CCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCC-------
Q 036331 3 NLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGN------- 75 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~------- 75 (147)
++++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+..+++|+++++++|...+..|..+..
T Consensus 102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 4566777777777776 66666777777777777777776 56666677777777777776655555555443
Q ss_pred --CCCCcEEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccccccc
Q 036331 76 --LSSLRNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLATA 144 (147)
Q Consensus 76 --l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~ 144 (147)
+++|+++++++|.+. .+|..+..+++|+.|++++|.+.+ +|..+..+++|++|++++|.+.+..+..
T Consensus 180 ~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~ 248 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPI 248 (328)
T ss_dssp EESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCC
T ss_pred ccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHH
Confidence 666666666666664 555556666666666666666664 3334566666666666666665555443
No 18
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=9.2e-21 Score=128.64 Aligned_cols=141 Identities=23% Similarity=0.200 Sum_probs=124.6
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
.++++|++|++++|.+.+..+..+.++++|+.|++++|.++...+..+..+++|+++++++|.+++..+..+..+++|++
T Consensus 82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 161 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKE 161 (270)
T ss_dssp SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccce
Confidence 56899999999999998655556789999999999999999777778899999999999999999655566889999999
Q ss_pred EEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccccc
Q 036331 82 LSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLA 142 (147)
Q Consensus 82 l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~ 142 (147)
+++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++.+.+.
T Consensus 162 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred eEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 9999999976666678889999999999999998777788999999999999999987653
No 19
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=2.8e-21 Score=133.12 Aligned_cols=137 Identities=25% Similarity=0.268 Sum_probs=64.2
Q ss_pred CCcccEEEccCCcccccCCccCCCCCCccEEecccccccc-CCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEE
Q 036331 4 LKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSG-SIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNL 82 (147)
Q Consensus 4 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l 82 (147)
+++|++|++++|.+.+..+..+.++++|+.+++++|.+.+ ..|..+..+++|+++++++|.+++..|..+..+++|+++
T Consensus 125 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 204 (306)
T 2z66_A 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204 (306)
T ss_dssp CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEE
Confidence 3444444444444443333334444444444444444442 234444444455555555554444334444444555555
Q ss_pred EccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcc-cCcEEEeecCccccc
Q 036331 83 SLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALH-LCLHLRLHRWTVSVL 140 (147)
Q Consensus 83 ~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~-~L~~l~l~~n~i~~~ 140 (147)
++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..++ +|++|++++|.+++.
T Consensus 205 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp ECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred ECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 5555554433333444445555555555555544444444442 455555555555443
No 20
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=4.3e-21 Score=132.21 Aligned_cols=144 Identities=19% Similarity=0.157 Sum_probs=116.9
Q ss_pred CCCCcccEEEccCCcccccCC-ccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccc-cCCCCCCCCCCC
Q 036331 2 GNLKSLLQLDLSENQLSGSIP-LSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNG-VIPPSIGNLSSL 79 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~~l~~L 79 (147)
.++++|++|++++|.+.+..+ ..+..+++|+++++++|.+.+..+..+..+++|+++++++|.+.+ ..|..+..+++|
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 177 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence 356778888888888774333 457788888888888888887777778888889999999888875 467888888899
Q ss_pred cEEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccccccccc
Q 036331 80 RNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLATAL 145 (147)
Q Consensus 80 ~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 145 (147)
+++++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+
T Consensus 178 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 999999998877667788888999999999999888777778888999999999999888766543
No 21
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=1.5e-20 Score=127.82 Aligned_cols=139 Identities=22% Similarity=0.257 Sum_probs=77.7
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
.++++|++|++++|.+.+..+..+.++++|+++++++|.+.+..+..+..+++|+++++++|.+.+..+..+..+++|++
T Consensus 49 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 128 (276)
T 2z62_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (276)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred ccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCE
Confidence 34555666666666555333344555566666666666655444455555666666666666655433334555666666
Q ss_pred EEccCCcccc-CchHHhhcCCcccEEEccCceeeecchHhhhhcccCc----EEEeecCccccc
Q 036331 82 LSLFNNGLYS-SIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCL----HLRLHRWTVSVL 140 (147)
Q Consensus 82 l~l~~n~l~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~----~l~l~~n~i~~~ 140 (147)
+++++|.+.+ .+|..+..+++|+.|++++|.+.+..+..+..+++|+ ++++++|.+++.
T Consensus 129 L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~ 192 (276)
T 2z62_A 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192 (276)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEE
T ss_pred EECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCccccc
Confidence 6666666543 2455566666666666666666655555555544444 455555555443
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=4.4e-21 Score=138.38 Aligned_cols=138 Identities=20% Similarity=0.102 Sum_probs=128.2
Q ss_pred CcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEc
Q 036331 5 KSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSL 84 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l 84 (147)
++|+.+++++|.+.+..|..+..+++|+.+++++|.+.+..+..+..+++|+++++++|.+.+..+..+..+++|+++++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 68999999999999888888999999999999999999777889999999999999999998777888899999999999
Q ss_pred cCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccccc
Q 036331 85 FNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLA 142 (147)
Q Consensus 85 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~ 142 (147)
++|.+.+..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++.++
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999988778889999999999999999998777788999999999999999999886
No 23
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.85 E-value=6e-21 Score=123.70 Aligned_cols=135 Identities=21% Similarity=0.151 Sum_probs=118.2
Q ss_pred ccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCc-ccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEcc
Q 036331 7 LLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPP-ILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLF 85 (147)
Q Consensus 7 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~ 85 (147)
-++++++++++. .+|..+.. +++.+++++|.+.+..+. .+..+++|+++++++|.+++..|..+..+++|++++++
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 368899999986 68876543 899999999999855443 48899999999999999998778899999999999999
Q ss_pred CCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccccccc
Q 036331 86 NNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLATA 144 (147)
Q Consensus 86 ~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~ 144 (147)
+|.+.+..+..+..+++|+.|++++|.+++..|..+..+++|++|++++|.+++.++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 145 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch
Confidence 99998777777889999999999999999998999999999999999999999887643
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=7.8e-21 Score=141.40 Aligned_cols=140 Identities=25% Similarity=0.197 Sum_probs=121.8
Q ss_pred cccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEcc
Q 036331 6 SLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLF 85 (147)
Q Consensus 6 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~ 85 (147)
++++|++++|.+++..+..|.++++|++|++++|.+++..++.|..+++|+++++++|++++..+..|.++.+|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 68999999999986555679999999999999999997777889999999999999999986555678999999999999
Q ss_pred CCccccCchHHhhcCCcccEEEccCceeee-cchHhhhhcccCcEEEeecCcccccccccc
Q 036331 86 NNGLYSSIPEEIGYLMSVSELELCTIILVG-LFLIQLVALHLCLHLRLHRWTVSVLLATAL 145 (147)
Q Consensus 86 ~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 145 (147)
+|.+.+..+..++++++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..+.+|
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l 193 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 193 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccc
Confidence 999966555578899999999999999876 357788999999999999999988766554
No 25
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=2.1e-20 Score=135.71 Aligned_cols=141 Identities=24% Similarity=0.241 Sum_probs=83.9
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
.++++|++|++++|.+.+..|..+.++++|++|++++|.+....+..+..+++|+++++++|.+.+..+..+..+++|++
T Consensus 53 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 132 (477)
T 2id5_A 53 ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence 44556666666666665444555666666666666666665333344556666666666666665555555566666666
Q ss_pred EEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccccc
Q 036331 82 LSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLA 142 (147)
Q Consensus 82 l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~ 142 (147)
+++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+
T Consensus 133 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 193 (477)
T 2id5_A 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193 (477)
T ss_dssp EEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred EECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence 6666666655445555566666666666666665555556666666666666666655443
No 26
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=2.2e-20 Score=127.02 Aligned_cols=140 Identities=25% Similarity=0.207 Sum_probs=124.4
Q ss_pred cccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEcc
Q 036331 6 SLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLF 85 (147)
Q Consensus 6 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~ 85 (147)
++++|++++|.+.+..+..+.++++|+++++++|.+....+..+..+++|+++++++|.+.+..+..+..+++|++++++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 59999999999986556678999999999999999997767789999999999999999997777889999999999999
Q ss_pred CCccccCchHHhhcCCcccEEEccCceeeec-chHhhhhcccCcEEEeecCcccccccccc
Q 036331 86 NNGLYSSIPEEIGYLMSVSELELCTIILVGL-FLIQLVALHLCLHLRLHRWTVSVLLATAL 145 (147)
Q Consensus 86 ~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 145 (147)
+|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|.+++..+.+|
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 169 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence 9999766555788999999999999999874 58899999999999999999998765443
No 27
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.84 E-value=2.9e-20 Score=127.54 Aligned_cols=133 Identities=24% Similarity=0.236 Sum_probs=61.7
Q ss_pred CCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEE
Q 036331 3 NLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNL 82 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l 82 (147)
++++|+.|++++|.+.+ ++.. ..+++|+.|++++|.+. .+|..+..+++|+++++++|.+++..+..+..+++|+++
T Consensus 53 ~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L 129 (290)
T 1p9a_G 53 PYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQEL 129 (290)
T ss_dssp TCTTCCEEECTTSCCCE-EECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEE
T ss_pred cCCCCCEEECCCCccCc-ccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEE
Confidence 34444444444444442 1111 33444444444444444 344444445555555555555543333444445555555
Q ss_pred EccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccc
Q 036331 83 SLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVS 138 (147)
Q Consensus 83 ~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~ 138 (147)
++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 130 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 185 (290)
T 1p9a_G 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY 185 (290)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence 55555553333333444455555555555554443334444555555555555444
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=3.5e-20 Score=137.87 Aligned_cols=136 Identities=24% Similarity=0.219 Sum_probs=70.0
Q ss_pred cccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEcc
Q 036331 6 SLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLF 85 (147)
Q Consensus 6 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~ 85 (147)
++++|++++|.+.+..+..+.++++|+++++++|.+++..|..+..+++|+++++++|.+++..|..+..+++|++++++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 112 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV 112 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence 45555555555554334445555555555555555554444455555555555555555554445555555555555555
Q ss_pred CCccccCchHHhhcCCcccEEEccCceeee-cchHhhhhcccCcEEEeecCcccccc
Q 036331 86 NNGLYSSIPEEIGYLMSVSELELCTIILVG-LFLIQLVALHLCLHLRLHRWTVSVLL 141 (147)
Q Consensus 86 ~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~-~~~~~~~~l~~L~~l~l~~n~i~~~~ 141 (147)
+|.+.+..+..++.+++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..
T Consensus 113 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp TSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred CCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 555543333444555555555555555543 33445555555555555555554443
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=2.4e-20 Score=138.72 Aligned_cols=145 Identities=20% Similarity=0.219 Sum_probs=130.7
Q ss_pred CCCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCc
Q 036331 1 MGNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLR 80 (147)
Q Consensus 1 l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~ 80 (147)
|+++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..|..+..+++|+++++++|.+.+..+..+..+++|+
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 131 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCC
T ss_pred ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCC
Confidence 46889999999999999976777899999999999999999977799999999999999999999866667899999999
Q ss_pred EEEccCCcccc-CchHHhhcCCcccEEEccCceeeecchHhhhhcccCc----EEEeecCcccccccccc
Q 036331 81 NLSLFNNGLYS-SIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCL----HLRLHRWTVSVLLATAL 145 (147)
Q Consensus 81 ~l~l~~n~l~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~----~l~l~~n~i~~~~~~~~ 145 (147)
++++++|.+.+ .+|..++.+++|++|++++|.+.+..+..+..+.+|+ ++++++|.+++..+.+|
T Consensus 132 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~ 201 (606)
T 3vq2_A 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201 (606)
T ss_dssp EEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTT
T ss_pred EEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccc
Confidence 99999999975 6799999999999999999999998888888888776 89999999988766554
No 30
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=6.5e-21 Score=142.92 Aligned_cols=121 Identities=13% Similarity=0.064 Sum_probs=95.5
Q ss_pred CCccCCCCCCccEEeccccccccC-----------------CCcccC--CCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 21 IPLSFGNLSSLTMKSPFSNSLSGS-----------------IPPILG--NLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 21 ~~~~~~~~~~L~~l~l~~~~~~~~-----------------~~~~~~--~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
+|..+.++++|++|++++|.+++. +|..+. .+++|+++++++|.+.+..|..+..+++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 666777888888888888888754 788877 8888888888888877778888888888888
Q ss_pred EEccCCc-ccc-CchHHhhcC------CcccEEEccCceeeecchH--hhhhcccCcEEEeecCccccccc
Q 036331 82 LSLFNNG-LYS-SIPEEIGYL------MSVSELELCTIILVGLFLI--QLVALHLCLHLRLHRWTVSVLLA 142 (147)
Q Consensus 82 l~l~~n~-l~~-~~~~~~~~~------~~L~~l~l~~n~~~~~~~~--~~~~l~~L~~l~l~~n~i~~~~~ 142 (147)
+++++|. +.+ .+|..++.+ ++|++|++++|.+. .+|. .+..+++|++|++++|.++|.+|
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip 347 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP 347 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence 8888887 766 677777765 78888888888877 5666 78888888888888888876665
No 31
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.83 E-value=1.7e-20 Score=118.99 Aligned_cols=137 Identities=20% Similarity=0.112 Sum_probs=119.3
Q ss_pred CCCcccEEEccCCccc-ccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 3 NLKSLLQLDLSENQLS-GSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
..++|+.|++++|.+. +.+|..+..+++|+.|++++|.++.. ..+..+++|+++++++|.+.+..|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3578999999999997 67888889999999999999999844 78889999999999999999767777777999999
Q ss_pred EEccCCccccCch-HHhhcCCcccEEEccCceeeecch---HhhhhcccCcEEEeecCcccccc
Q 036331 82 LSLFNNGLYSSIP-EEIGYLMSVSELELCTIILVGLFL---IQLVALHLCLHLRLHRWTVSVLL 141 (147)
Q Consensus 82 l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~l~~L~~l~l~~n~i~~~~ 141 (147)
+++++|.+.+... ..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+....
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 9999999955322 678899999999999999997665 58899999999999999887654
No 32
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.83 E-value=5.3e-20 Score=119.38 Aligned_cols=132 Identities=20% Similarity=0.141 Sum_probs=116.7
Q ss_pred cEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCC
Q 036331 8 LQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNN 87 (147)
Q Consensus 8 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n 87 (147)
++++.+++.+. .+|..+. ++++.|++++|.++ .+|..+..+++|+++++++|.+++..+..|..+++|+++++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57889999887 6776653 68999999999998 77889999999999999999999777778999999999999999
Q ss_pred ccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccccccc
Q 036331 88 GLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLAT 143 (147)
Q Consensus 88 ~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~ 143 (147)
.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++++|++.+.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 99877777889999999999999999987777899999999999999999876543
No 33
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.83 E-value=7.7e-20 Score=120.83 Aligned_cols=135 Identities=21% Similarity=0.190 Sum_probs=119.4
Q ss_pred cEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCC
Q 036331 8 LQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNN 87 (147)
Q Consensus 8 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n 87 (147)
+.++.++++++ .+|..+. ++++.+++++|.++...+..+..+++|+++++++|.+++..|..+..+++|+++++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56888888887 6777654 78999999999999776778999999999999999999888899999999999999999
Q ss_pred ccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccccccccc
Q 036331 88 GLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLATAL 145 (147)
Q Consensus 88 ~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 145 (147)
.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.|++..+.+|
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 148 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH
Confidence 9965544557889999999999999999888999999999999999999998876544
No 34
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.83 E-value=3.3e-20 Score=120.56 Aligned_cols=132 Identities=17% Similarity=0.138 Sum_probs=91.8
Q ss_pred CCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEE
Q 036331 4 LKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLS 83 (147)
Q Consensus 4 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~ 83 (147)
+++|+.+++++|.+. .+| .+..+++|+++++++|.+. .+..+..+++|+++++++|.+++..+..+..+++|++++
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 456777777777776 455 5667777777777777554 234566777777777777777765666677777777777
Q ss_pred ccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccc
Q 036331 84 LFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVL 140 (147)
Q Consensus 84 l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~ 140 (147)
+++|.+.+..+..+..+++|++|++++|...+.++ .+..+++|++|++++|.+++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh
Confidence 77777766666777777777777777776333343 567777777777777777664
No 35
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.83 E-value=4.8e-20 Score=129.88 Aligned_cols=136 Identities=21% Similarity=0.107 Sum_probs=84.0
Q ss_pred cccEEEccCCcccccCCccCC-CCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEc
Q 036331 6 SLLQLDLSENQLSGSIPLSFG-NLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSL 84 (147)
Q Consensus 6 ~L~~l~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l 84 (147)
.++.|++++|.+.+..+..+. ++++|+.|++++|.++...+..+..+++|+++++++|.+....+..+..+++|++|++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 356666776666644444444 6666777777666666555556666666777777666666544455666666666777
Q ss_pred cCCccccCchHHhhcCCcccEEEccCceeeecchHhh---hhcccCcEEEeecCcccccc
Q 036331 85 FNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQL---VALHLCLHLRLHRWTVSVLL 141 (147)
Q Consensus 85 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~---~~l~~L~~l~l~~n~i~~~~ 141 (147)
++|.+.+..|..+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|.|+...
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 6666655555566666666666666666665444444 45666666666666666543
No 36
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=1.2e-19 Score=124.53 Aligned_cols=138 Identities=30% Similarity=0.216 Sum_probs=122.2
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
+.+++|++|++++|.+. .+|..+..+++|+.|++++|.+++..+..+..+++|+++++++|.+++..+..+..+++|++
T Consensus 74 ~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence 46789999999999998 78888899999999999999999666688999999999999999999666667888999999
Q ss_pred EEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccccc
Q 036331 82 LSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLL 141 (147)
Q Consensus 82 l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~ 141 (147)
+++++|.+.+..+..+..+++|+.|++++|.+. .+|..+...++|+++++++|++.+.+
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 999999996544455678999999999999998 56777888899999999999998765
No 37
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=5.6e-20 Score=136.75 Aligned_cols=145 Identities=18% Similarity=0.060 Sum_probs=102.9
Q ss_pred CCCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCc
Q 036331 1 MGNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLR 80 (147)
Q Consensus 1 l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~ 80 (147)
|.++++|++|++++|.+.+..|..|.++++|++|++++|.+.+..|..+..+++|+++++++|.+++..+..+..+++|+
T Consensus 53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~ 132 (606)
T 3t6q_A 53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132 (606)
T ss_dssp STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCC
T ss_pred hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCccc
Confidence 35667777777777777665666677777777777777777766667777777777777777777754456677777777
Q ss_pred EEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCc--EEEeecCcccccccccc
Q 036331 81 NLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCL--HLRLHRWTVSVLLATAL 145 (147)
Q Consensus 81 ~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~--~l~l~~n~i~~~~~~~~ 145 (147)
++++++|.+.+..++.+..+++|+.|++++|.+.+..+..+..+++|+ ++++++|.+++..+.+|
T Consensus 133 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~ 199 (606)
T 3t6q_A 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF 199 (606)
T ss_dssp EEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT
T ss_pred EEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHh
Confidence 777777777553333344477788888888877777777777788777 77788888777666554
No 38
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=7.4e-20 Score=136.11 Aligned_cols=139 Identities=22% Similarity=0.187 Sum_probs=89.2
Q ss_pred CCCcccEEEccCCcccccCCccCCCCCCccEEecccccccc---CCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCC
Q 036331 3 NLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSG---SIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSL 79 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~---~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L 79 (147)
++++|++|++++|.+.+..|..+.++++|+.+++++|.+.+ ..+..+..+++|+++++++|.+.+..|..+..+++|
T Consensus 423 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502 (606)
T ss_dssp TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Confidence 45555666666665554455555566666666666666553 122445566666666666666665556666667777
Q ss_pred cEEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccccc
Q 036331 80 RNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLA 142 (147)
Q Consensus 80 ~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~ 142 (147)
+++++++|.+.+..|..+..+++| .+++++|.+++..|..+..+++|+++++++|++.+.++
T Consensus 503 ~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 503 NHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 777777777766666666667777 77777777776666667777777777777777766554
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=5.2e-20 Score=132.75 Aligned_cols=141 Identities=21% Similarity=0.154 Sum_probs=123.9
Q ss_pred CcccEEEccCCcccccCCccCCCCCCccEEeccccccccCC-CcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEE
Q 036331 5 KSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSI-PPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLS 83 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~ 83 (147)
++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+ +..+..+++|+++++++|.+.+..|..+..+++|++++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 57899999999998777888999999999999999886444 67789999999999999999977788999999999999
Q ss_pred ccCCccccCchHH--hhcCCcccEEEccCceeeecchHh-hhhcccCcEEEeecCcccccccccc
Q 036331 84 LFNNGLYSSIPEE--IGYLMSVSELELCTIILVGLFLIQ-LVALHLCLHLRLHRWTVSVLLATAL 145 (147)
Q Consensus 84 l~~n~l~~~~~~~--~~~~~~L~~l~l~~n~~~~~~~~~-~~~l~~L~~l~l~~n~i~~~~~~~~ 145 (147)
+++|.+.+..+.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+++..+.++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 174 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhh
Confidence 9999997766665 888999999999999999887765 8899999999999999988766543
No 40
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=2.9e-20 Score=137.27 Aligned_cols=142 Identities=20% Similarity=0.153 Sum_probs=121.4
Q ss_pred CCCCcccEEEccCCcccccCC-ccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCccc-ccCCCCCCCCCCC
Q 036331 2 GNLKSLLQLDLSENQLSGSIP-LSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLN-GVIPPSIGNLSSL 79 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~-~~~~~~~~~l~~L 79 (147)
.++++|+.|++++|.+.+..+ ..+.++++|+.+++++|.+.+..+..+..+++|+++++++|.+. +..|..+..+++|
T Consensus 393 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472 (570)
T ss_dssp ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence 357788888888888875555 35778899999999999988777888888999999999999987 4678888899999
Q ss_pred cEEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccccccc
Q 036331 80 RNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLAT 143 (147)
Q Consensus 80 ~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~ 143 (147)
+++++++|.+.+..|..+..+++|+.|++++|.+++..+..+..+++|+++++++|++++.++.
T Consensus 473 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9999999999877788888899999999999999988878889999999999999999988764
No 41
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=1.2e-19 Score=133.98 Aligned_cols=143 Identities=23% Similarity=0.265 Sum_probs=84.8
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
+++++|++|++++|.+.+..+..+.++++|++|++++|.+....+..+..+++|+++++++|.+.+..+..+..+++|++
T Consensus 49 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 128 (570)
T 2z63_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (570)
T ss_dssp TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCE
T ss_pred hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccE
Confidence 44556666666666655444445556666666666666665444455666666666666666665333334556666666
Q ss_pred EEccCCcccc-CchHHhhcCCcccEEEccCceeeecchHhhhhcccC----cEEEeecCccccccccc
Q 036331 82 LSLFNNGLYS-SIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLC----LHLRLHRWTVSVLLATA 144 (147)
Q Consensus 82 l~l~~n~l~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L----~~l~l~~n~i~~~~~~~ 144 (147)
+++++|.+.+ .+|..++.+++|++|++++|.+.+..+..+..+++| .++++++|.+.+..+.+
T Consensus 129 L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~ 196 (570)
T 2z63_A 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196 (570)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred EecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHH
Confidence 6666666544 345666666666666666666666555566666666 56666666666555443
No 42
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.83 E-value=1e-19 Score=118.26 Aligned_cols=133 Identities=16% Similarity=0.132 Sum_probs=114.1
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
..+++|++|++++|.+. .++.+..+++|+++++++|.+++..+..+..+++|+++++++|.+++..+..+..+++|++
T Consensus 63 ~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 140 (197)
T 4ezg_A 63 EYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140 (197)
T ss_dssp GGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCE
T ss_pred hcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCE
Confidence 46789999999999765 3447888999999999999999777888999999999999999999777888889999999
Q ss_pred EEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccc
Q 036331 82 LSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSV 139 (147)
Q Consensus 82 l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~ 139 (147)
+++++|...+.+| .+..+++|+.|++++|.+.+.. .+..+++|++|++++|+|.+
T Consensus 141 L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 141 IDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp EECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred EEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence 9999998335666 6889999999999999998743 78999999999999999875
No 43
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=3.8e-21 Score=144.17 Aligned_cols=135 Identities=16% Similarity=0.177 Sum_probs=102.8
Q ss_pred CCCCcccEEEccCCccccc-----------------CCccCC--CCCCccEEeccccccccCCCcccCCCCCCCEEEccc
Q 036331 2 GNLKSLLQLDLSENQLSGS-----------------IPLSFG--NLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHV 62 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~-----------------~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 62 (147)
+++++|++|++++|.+.+. +|+.+. ++++|++|++++|.+.+.+|..+..+++|+++++++
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 4677888888888888864 888877 888888888888888878888888888888888888
Q ss_pred Cc-ccc-cCCCCCCCC------CCCcEEEccCCccccCchH--HhhcCCcccEEEccCceeeecchHhhhhcccCcEEEe
Q 036331 63 NQ-LNG-VIPPSIGNL------SSLRNLSLFNNGLYSSIPE--EIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRL 132 (147)
Q Consensus 63 n~-~~~-~~~~~~~~l------~~L~~l~l~~n~l~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l 132 (147)
|. +++ ..|..++.+ ++|+++++++|.+. .+|. .++.+++|+.|++++|.+.|.+| .+..+++|++|++
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 87 776 566655554 67777777777775 6666 67777777777777777776666 6666666666666
Q ss_pred ecCccc
Q 036331 133 HRWTVS 138 (147)
Q Consensus 133 ~~n~i~ 138 (147)
++|.++
T Consensus 361 ~~N~l~ 366 (636)
T 4eco_A 361 AYNQIT 366 (636)
T ss_dssp CSSEEE
T ss_pred CCCccc
Confidence 666665
No 44
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.82 E-value=3.1e-20 Score=115.65 Aligned_cols=128 Identities=19% Similarity=0.149 Sum_probs=104.1
Q ss_pred CCcccEEEccCCccc-ccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEE
Q 036331 4 LKSLLQLDLSENQLS-GSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNL 82 (147)
Q Consensus 4 l~~L~~l~l~~~~~~-~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l 82 (147)
.++++.+++++|.+. +.+|..+..+++|+.+++++|.+++. ..+..+++|+++++++|.+.+..|..+..+++|+++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467889999999887 67887788889999999999988844 777888899999999998886566666678889999
Q ss_pred EccCCccccC-chHHhhcCCcccEEEccCceeeecch---HhhhhcccCcEEEee
Q 036331 83 SLFNNGLYSS-IPEEIGYLMSVSELELCTIILVGLFL---IQLVALHLCLHLRLH 133 (147)
Q Consensus 83 ~l~~n~l~~~-~~~~~~~~~~L~~l~l~~n~~~~~~~---~~~~~l~~L~~l~l~ 133 (147)
++++|.+.+. .+..+..+++|+.+++++|.+++..+ ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999988542 23677888999999999998887655 578888899888875
No 45
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=5.6e-20 Score=120.31 Aligned_cols=138 Identities=25% Similarity=0.177 Sum_probs=116.5
Q ss_pred CCCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCc
Q 036331 1 MGNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLR 80 (147)
Q Consensus 1 l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~ 80 (147)
+.++++|++|++++|.+.+..+..+..+++|+++++++|.++...+..+..+++|+++++++|.+++..+..+..+++|+
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 127 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCC
Confidence 35789999999999999854445578999999999999999966566678999999999999999966566688999999
Q ss_pred EEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccccccccc
Q 036331 81 NLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLATAL 145 (147)
Q Consensus 81 ~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 145 (147)
++++++|.+.+..+..+..+++|+.+++++|++.+. +++|+.++++.|.++|.+|..+
T Consensus 128 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 128 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTBBCTT
T ss_pred EEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCceeeccC
Confidence 999999999765555688899999999999988754 4578888888888888877543
No 46
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.82 E-value=7.8e-20 Score=132.72 Aligned_cols=140 Identities=22% Similarity=0.192 Sum_probs=126.8
Q ss_pred CcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEc
Q 036331 5 KSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSL 84 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l 84 (147)
++++.|++++|.+.+..+..+.++++|++|++++|.+.+..|..+..+++|+++++++|.+....+..+..+++|+++++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 47899999999999767778999999999999999999777999999999999999999999655567889999999999
Q ss_pred cCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccccccc
Q 036331 85 FNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLATA 144 (147)
Q Consensus 85 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~ 144 (147)
++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+.+
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 999998887888999999999999999999888889999999999999999998765543
No 47
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=4e-20 Score=127.89 Aligned_cols=138 Identities=14% Similarity=0.094 Sum_probs=108.5
Q ss_pred CCCcccEEEccCCcccccCCccC--CCCCCccEEeccccccccCCCcccCCC-----CCCCEEEcccCcccccCCCCCCC
Q 036331 3 NLKSLLQLDLSENQLSGSIPLSF--GNLSSLTMKSPFSNSLSGSIPPILGNL-----KSLSTLRLHVNQLNGVIPPSIGN 75 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~~~--~~~~~L~~l~l~~~~~~~~~~~~~~~l-----~~L~~l~l~~n~~~~~~~~~~~~ 75 (147)
++++|++|++++|.+.+..|..+ ..+++|++|++++|.+++. |..+..+ ++|+++++++|.+.+..+..+..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 57889999999999988888875 7889999999999998855 7666665 88999999999888766678888
Q ss_pred CCCCcEEEccCCccccC--chHHh--hcCCcccEEEccCceeeec---chHhhhhcccCcEEEeecCcccccc
Q 036331 76 LSSLRNLSLFNNGLYSS--IPEEI--GYLMSVSELELCTIILVGL---FLIQLVALHLCLHLRLHRWTVSVLL 141 (147)
Q Consensus 76 l~~L~~l~l~~n~l~~~--~~~~~--~~~~~L~~l~l~~n~~~~~---~~~~~~~l~~L~~l~l~~n~i~~~~ 141 (147)
+++|+++++++|.+.+. .+..+ ..+++|++|++++|.+.+. ....+..+++|++|++++|.+++..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 88999999998887554 33344 6788888888888888732 2234456788888888888888755
No 48
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=1.6e-19 Score=127.16 Aligned_cols=139 Identities=26% Similarity=0.201 Sum_probs=121.8
Q ss_pred CCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEE
Q 036331 3 NLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNL 82 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l 82 (147)
++++|+.|++++|.+.+..+..+.++++|+.|++++|.+....+..+..+++|+++++++|.+.+..+..+..+++|++|
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 141 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence 78999999999999996666679999999999999999997767789999999999999999998778899999999999
Q ss_pred EccCCccccCchHH-h---hcCCcccEEEccCceeeecchHhhhhccc--CcEEEeecCccccccc
Q 036331 83 SLFNNGLYSSIPEE-I---GYLMSVSELELCTIILVGLFLIQLVALHL--CLHLRLHRWTVSVLLA 142 (147)
Q Consensus 83 ~l~~n~l~~~~~~~-~---~~~~~L~~l~l~~n~~~~~~~~~~~~l~~--L~~l~l~~n~i~~~~~ 142 (147)
++++|.+.+ +|.. + ..+++|+.|++++|.+.+..+..+..++. ++.|++++|++.+.+.
T Consensus 142 ~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 142 YLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp ECCSSCCCS-CCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred ECCCCcCCe-eCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 999999955 5544 4 57899999999999999877788888887 4899999999987653
No 49
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=2.9e-19 Score=118.09 Aligned_cols=136 Identities=16% Similarity=0.109 Sum_probs=119.5
Q ss_pred ccEEEccCCcccccCCccCCCCCCccEEeccccccccCCC-cccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEcc
Q 036331 7 LLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIP-PILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLF 85 (147)
Q Consensus 7 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~ 85 (147)
-+.++++++.++ .+|..+. ..++.+++++|.+++..+ ..+..+++|+++++++|.+++..+..+..+++|++++++
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 358899999987 5777653 457899999999996544 457899999999999999997777789999999999999
Q ss_pred CCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccccccccc
Q 036331 86 NNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLATAL 145 (147)
Q Consensus 86 ~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 145 (147)
+|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.|++..+.+|
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 149 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence 999977777779999999999999999999888999999999999999999999877655
No 50
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.81 E-value=5.8e-19 Score=112.82 Aligned_cols=133 Identities=23% Similarity=0.144 Sum_probs=109.7
Q ss_pred ccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccC
Q 036331 7 LLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFN 86 (147)
Q Consensus 7 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~ 86 (147)
.+.++.+++++. .+|..+ .++++.+++++|.+.+..+..+..+++|+++++++|.+++..+..+..+++|+++++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 567888888887 566544 36899999999999865566678899999999999999865556678899999999999
Q ss_pred CccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccccc
Q 036331 87 NGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLA 142 (147)
Q Consensus 87 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~ 142 (147)
|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+++++++|.+++..+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99976655567889999999999999987766677889999999999999988764
No 51
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=7.1e-19 Score=116.81 Aligned_cols=135 Identities=21% Similarity=0.209 Sum_probs=116.7
Q ss_pred ccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccC
Q 036331 7 LLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFN 86 (147)
Q Consensus 7 L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~ 86 (147)
-+.++.+++++. .+|..+. ++++.|++++|.+++..+..+..+++|+++++++|.+....+..+..+++|+++++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 457888888877 6776554 8999999999999987788999999999999999999855556678999999999999
Q ss_pred CccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccccccccc
Q 036331 87 NGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLATAL 145 (147)
Q Consensus 87 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 145 (147)
|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.|++..+..|
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~ 155 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAF 155 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTT
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHH
Confidence 9997665666789999999999999999 667888999999999999999997765443
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=2.3e-19 Score=133.49 Aligned_cols=143 Identities=24% Similarity=0.249 Sum_probs=122.7
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccc-cCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCc
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLS-GSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLR 80 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~ 80 (147)
..++.++.+++++|.+.+..+..+..++.++.+++++|... ...|..+..+++|+++++++|++++..|..+..+++|+
T Consensus 442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~ 521 (635)
T 4g8a_A 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 521 (635)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCC
Confidence 45677888888888888777777888899999999998754 35678888999999999999999987788899999999
Q ss_pred EEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhc-ccCcEEEeecCccccccccc
Q 036331 81 NLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVAL-HLCLHLRLHRWTVSVLLATA 144 (147)
Q Consensus 81 ~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l-~~L~~l~l~~n~i~~~~~~~ 144 (147)
+|++++|.+.+..|..+..+++|+.|++++|.+++..|..+..+ ++|++|++++|++++.+..+
T Consensus 522 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 522 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence 99999999987777788899999999999999999888888887 68999999999998876543
No 53
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=2.7e-19 Score=137.81 Aligned_cols=140 Identities=20% Similarity=0.197 Sum_probs=106.9
Q ss_pred CcccEEEccCCcccccCCccCCCCCCccEEeccccccccCC-CcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEE
Q 036331 5 KSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSI-PPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLS 83 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~ 83 (147)
+++++|++++|.+.+..+..+.++++|++|++++|...+.+ |..+..+++|+++++++|.+.+..|..+..+++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 56788888888887666777888888888888888544333 67778888888888888888777777888888888888
Q ss_pred ccCCccccCchHH--hhcCCcccEEEccCceeeecch-HhhhhcccCcEEEeecCccccccccc
Q 036331 84 LFNNGLYSSIPEE--IGYLMSVSELELCTIILVGLFL-IQLVALHLCLHLRLHRWTVSVLLATA 144 (147)
Q Consensus 84 l~~n~l~~~~~~~--~~~~~~L~~l~l~~n~~~~~~~-~~~~~l~~L~~l~l~~n~i~~~~~~~ 144 (147)
+++|.+.+..|.. +..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+.+
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~ 167 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence 8888887655554 6778888888888888776544 56788888888888888877765544
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=5.2e-19 Score=127.41 Aligned_cols=64 Identities=27% Similarity=0.280 Sum_probs=28.8
Q ss_pred CCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCccc
Q 036331 3 NLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLN 66 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~ 66 (147)
++++|++|++++|.+.+..+..+.++++|++|++++|.++...+..+..+++|+++++++|.+.
T Consensus 86 ~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~ 149 (440)
T 3zyj_A 86 HLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE 149 (440)
T ss_dssp SCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC
T ss_pred CCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc
Confidence 4445555555555544333334444444444444444444332333444444444444444443
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=6.5e-19 Score=127.30 Aligned_cols=140 Identities=21% Similarity=0.160 Sum_probs=69.6
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCC----------
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPP---------- 71 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~---------- 71 (147)
.++++|++|++++|.+.+..+..+.++++|++|++++|.++...+..+..+++|+++++++|.+....+.
T Consensus 96 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 175 (452)
T 3zyi_A 96 RHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175 (452)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccE
Confidence 3455566666666555544444455555555555555555533334444555555555555544422221
Q ss_pred ---------------CCCCCC----------------------CCcEEEccCCccccCchHHhhcCCcccEEEccCceee
Q 036331 72 ---------------SIGNLS----------------------SLRNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILV 114 (147)
Q Consensus 72 ---------------~~~~l~----------------------~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 114 (147)
.+..++ +|+++++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 176 L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 255 (452)
T 3zyi_A 176 LDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255 (452)
T ss_dssp EECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC
T ss_pred EeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc
Confidence 222333 3444444444443333444555555555555555555
Q ss_pred ecchHhhhhcccCcEEEeecCcccccc
Q 036331 115 GLFLIQLVALHLCLHLRLHRWTVSVLL 141 (147)
Q Consensus 115 ~~~~~~~~~l~~L~~l~l~~n~i~~~~ 141 (147)
+..+..+.++++|++|++++|.+++..
T Consensus 256 ~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 256 LIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred eECHHHhcCCCCCCEEECCCCcCCccC
Confidence 554555555555555555555555443
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=4.4e-19 Score=123.36 Aligned_cols=140 Identities=21% Similarity=0.227 Sum_probs=94.3
Q ss_pred CCCCcccEEEccCCcccc--cCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCC
Q 036331 2 GNLKSLLQLDLSENQLSG--SIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSL 79 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L 79 (147)
.++++|+++++++|.+.. ..+..+.++++|+.+++++|.+. .+|..+. ++|+++++++|.+++..+..+..+++|
T Consensus 142 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L 218 (330)
T 1xku_A 142 NGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNL 218 (330)
T ss_dssp TTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTC
T ss_pred cCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCC
Confidence 346667777777766642 34455666777777777777666 4444332 567777777777766556667777777
Q ss_pred cEEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccccccccc
Q 036331 80 RNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLATAL 145 (147)
Q Consensus 80 ~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 145 (147)
+++++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.|++..+.+|
T Consensus 219 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 77777777776555556777777777777777776 455667777777777777777776655444
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=9.5e-20 Score=127.83 Aligned_cols=135 Identities=24% Similarity=0.144 Sum_probs=67.1
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCC--CCCCCCCC
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPP--SIGNLSSL 79 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~--~~~~l~~L 79 (147)
.++++|++|++++|.+.+..+..+.++++|+++++++|.+++..+..+..+++|+++++++|.+.. .|. .+..+++|
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~~l~~L 151 (353)
T 2z80_A 73 QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFSHLTKL 151 (353)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCSSCSCTTCTTC
T ss_pred ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCchhhhccCCCC
Confidence 344555555555555554334445555555555555555552222224555555555555555552 232 44455555
Q ss_pred cEEEccCCc-cccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcc
Q 036331 80 RNLSLFNNG-LYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTV 137 (147)
Q Consensus 80 ~~l~l~~n~-l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i 137 (147)
+++++++|. +....+..+..+++|+++++++|.+.+..|..+..+++|++|++++|.+
T Consensus 152 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred cEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 555555552 3222233445555555555555555554444555544455544444444
No 58
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=2.2e-19 Score=135.16 Aligned_cols=141 Identities=22% Similarity=0.137 Sum_probs=81.9
Q ss_pred CCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEE
Q 036331 3 NLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNL 82 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l 82 (147)
++++|++|++++|.+.+..|..+.++++|+++++++|.++...+..+..+++|+++++++|.+.+..+..+..+++|+++
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 126 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEE
T ss_pred CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEE
Confidence 34556666666666554445555556666666666666653333345666666666666666654444556666666666
Q ss_pred EccCCccccCchHHhhcCCcccEEEccCceeeecchHhhh--hcccCcEEEeecCcccccccc
Q 036331 83 SLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLV--ALHLCLHLRLHRWTVSVLLAT 143 (147)
Q Consensus 83 ~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~--~l~~L~~l~l~~n~i~~~~~~ 143 (147)
++++|.+.+..|..+..+++|++|++++|.+.+..+..+. .+++|++|++++|.+++..+.
T Consensus 127 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 189 (680)
T 1ziw_A 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189 (680)
T ss_dssp ECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT
T ss_pred ECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh
Confidence 6666666555555555666666666666666655554443 345666666666666655443
No 59
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=1e-19 Score=133.95 Aligned_cols=140 Identities=19% Similarity=0.181 Sum_probs=98.5
Q ss_pred CcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEc
Q 036331 5 KSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSL 84 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l 84 (147)
++|++|++++|.+.+..|..+.++++|+++++++|.+.+..+..+..+++|+++++++|.+.+..+..+..+++|+++++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 46777788877777656666777777888888777777666677777777777777777777544455777777777777
Q ss_pred cCCcccc-CchHHhhcCCcccEEEccCceeeecc-hHhhhhcccCcEEEeecCccccccccc
Q 036331 85 FNNGLYS-SIPEEIGYLMSVSELELCTIILVGLF-LIQLVALHLCLHLRLHRWTVSVLLATA 144 (147)
Q Consensus 85 ~~n~l~~-~~~~~~~~~~~L~~l~l~~n~~~~~~-~~~~~~l~~L~~l~l~~n~i~~~~~~~ 144 (147)
++|.+.+ ..|..++.+++|+.|++++|.+.+.+ +..+.++++|++|++++|.+++..+.+
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence 7777754 34556677777777777777643333 346777777777777777777655543
No 60
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=5.8e-19 Score=131.49 Aligned_cols=87 Identities=28% Similarity=0.267 Sum_probs=42.1
Q ss_pred CCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEE
Q 036331 3 NLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNL 82 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l 82 (147)
.+++|++|++++|.+.+..|..+.++++|++|++++|.+....+..+..+++|+++++++|.+.+..|..+..+++|+++
T Consensus 97 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 176 (597)
T 3oja_B 97 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176 (597)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEE
Confidence 34445555555555443333334455555555555555542222333455555555555555554444445555555555
Q ss_pred EccCCcc
Q 036331 83 SLFNNGL 89 (147)
Q Consensus 83 ~l~~n~l 89 (147)
++++|.+
T Consensus 177 ~L~~N~l 183 (597)
T 3oja_B 177 QLSSNRL 183 (597)
T ss_dssp ECTTSCC
T ss_pred ECcCCCC
Confidence 5555544
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.80 E-value=4.6e-19 Score=127.69 Aligned_cols=138 Identities=25% Similarity=0.218 Sum_probs=80.9
Q ss_pred CCCCcccEEEccCCcccccCCccC-------------------------CCCCCccEEeccccccccCCCcccCCCCCCC
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSF-------------------------GNLSSLTMKSPFSNSLSGSIPPILGNLKSLS 56 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~-------------------------~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~ 56 (147)
..+++|++|++++|.+....+..+ .++++|+.|++++|.++ .+| .+..+++|+
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~ 210 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLD 210 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCC
T ss_pred hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccC
Confidence 345666666666666553222234 44555555555555554 333 244555666
Q ss_pred EEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCc
Q 036331 57 TLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWT 136 (147)
Q Consensus 57 ~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~ 136 (147)
.+++++|.+++..|..+..+++|+++++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|+
T Consensus 211 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 66666666655555566666666666666666655555556666666666666666666555566666666666666666
Q ss_pred ccccc
Q 036331 137 VSVLL 141 (147)
Q Consensus 137 i~~~~ 141 (147)
+.+.+
T Consensus 291 ~~CdC 295 (440)
T 3zyj_A 291 WNCNC 295 (440)
T ss_dssp EECSS
T ss_pred ccCCC
Confidence 65544
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=1.1e-18 Score=126.13 Aligned_cols=118 Identities=24% Similarity=0.207 Sum_probs=93.8
Q ss_pred CCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCccc
Q 036331 25 FGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVS 104 (147)
Q Consensus 25 ~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~ 104 (147)
+.++++|+.|++++|.++ .+| .+..+++|+.+++++|.+.+..|..+..+++|+++++++|.+.+..+..+..+++|+
T Consensus 192 ~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269 (452)
T ss_dssp TTTCTTCCEEECTTSCCS-SCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred ccCCCCCCEEECCCCccc-ccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence 334445555555555554 222 345666777777888888766678899999999999999999888788899999999
Q ss_pred EEEccCceeeecchHhhhhcccCcEEEeecCccccccccc
Q 036331 105 ELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLATA 144 (147)
Q Consensus 105 ~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~ 144 (147)
.|++++|.+++..+..+..+++|++|++++|++.+.+...
T Consensus 270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp EEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred EEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCch
Confidence 9999999999888788899999999999999998876543
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=2.3e-19 Score=125.85 Aligned_cols=140 Identities=20% Similarity=0.190 Sum_probs=118.4
Q ss_pred CcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEc
Q 036331 5 KSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSL 84 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l 84 (147)
++|++|++++|.+.+..+..+.++++|+.+++++|.+++..+..+..+++|+++++++|.+++..+..+..+++|+++++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 47999999999998655557899999999999999999777788999999999999999998543344788999999999
Q ss_pred cCCccccCchH--HhhcCCcccEEEccCc-eeeecchHhhhhcccCcEEEeecCcccccccccc
Q 036331 85 FNNGLYSSIPE--EIGYLMSVSELELCTI-ILVGLFLIQLVALHLCLHLRLHRWTVSVLLATAL 145 (147)
Q Consensus 85 ~~n~l~~~~~~--~~~~~~~L~~l~l~~n-~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 145 (147)
++|.+. .+|. .+..+++|+.|++++| .+.+..+..+..+++|++|++++|.+++..+.+|
T Consensus 132 ~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 194 (353)
T 2z80_A 132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL 194 (353)
T ss_dssp TTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred CCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH
Confidence 999985 4554 6788999999999998 4666667789999999999999999988766554
No 64
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=4.1e-19 Score=130.11 Aligned_cols=140 Identities=21% Similarity=0.218 Sum_probs=87.4
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEecccccccc--CCCcccCCCCCCCEEEcccCcccccCCC-CCCCCC-
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSG--SIPPILGNLKSLSTLRLHVNQLNGVIPP-SIGNLS- 77 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~l~- 77 (147)
..+++|++|++++|.+.+..|..+.++++|+.+++++|.+.+ ..|..+..+++|+++++++|.+.+..|. .+..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 356677777777777776666667777777777777777663 3345566666666666666666643332 233344
Q ss_pred ---------------------CCcEEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCc
Q 036331 78 ---------------------SLRNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWT 136 (147)
Q Consensus 78 ---------------------~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~ 136 (147)
+|+++++++|.+. .+|..+..+++|+.|++++|.++...+..+..+++|+++++++|+
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCC
Confidence 5555555555553 555555566777777777777664333346667777777777777
Q ss_pred cccccc
Q 036331 137 VSVLLA 142 (147)
Q Consensus 137 i~~~~~ 142 (147)
+++.+.
T Consensus 480 ~~c~c~ 485 (520)
T 2z7x_B 480 WDCSCP 485 (520)
T ss_dssp BCCCHH
T ss_pred CcccCC
Confidence 766554
No 65
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.79 E-value=3.5e-18 Score=121.24 Aligned_cols=89 Identities=27% Similarity=0.256 Sum_probs=49.1
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
+++++|++|++++|.+.+..|..+.++++|++|++++|.+....+..+..+++|+++++++|.+.+..+..+..+++|++
T Consensus 90 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 169 (390)
T 3o6n_A 90 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 169 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCE
T ss_pred cCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCE
Confidence 34555666666666655444444555666666666666655222233455666666666666665444445555556666
Q ss_pred EEccCCccc
Q 036331 82 LSLFNNGLY 90 (147)
Q Consensus 82 l~l~~n~l~ 90 (147)
+++++|.+.
T Consensus 170 L~l~~n~l~ 178 (390)
T 3o6n_A 170 LQLSSNRLT 178 (390)
T ss_dssp EECCSSCCS
T ss_pred EECCCCcCC
Confidence 666555543
No 66
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=4.2e-19 Score=118.43 Aligned_cols=131 Identities=21% Similarity=0.238 Sum_probs=70.5
Q ss_pred cccEEEccCCcccccCCccCCCCCCccEEeccccc-cccCCCcccCCCCCCCEEEccc-CcccccCCCCCCCCCCCcEEE
Q 036331 6 SLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNS-LSGSIPPILGNLKSLSTLRLHV-NQLNGVIPPSIGNLSSLRNLS 83 (147)
Q Consensus 6 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~l~~L~~l~l~~-n~~~~~~~~~~~~l~~L~~l~ 83 (147)
++++|++++|++++..+..+.++++|+++++++|. ++...+..+..+++|+++++++ |.+++..+..+..+++|++++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45566666666553333345556666666666664 5433344555566666666665 555544344555555666666
Q ss_pred ccCCccccCchHHhhcCCccc---EEEccCc-eeeecchHhhhhcccCc-EEEeecCccc
Q 036331 84 LFNNGLYSSIPEEIGYLMSVS---ELELCTI-ILVGLFLIQLVALHLCL-HLRLHRWTVS 138 (147)
Q Consensus 84 l~~n~l~~~~~~~~~~~~~L~---~l~l~~n-~~~~~~~~~~~~l~~L~-~l~l~~n~i~ 138 (147)
+++|.+.+ +|. +..+++|+ .+++++| .+.+..+..+.++++|+ ++++++|.++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 66655533 343 44445554 5555555 55544444455555555 5555555554
No 67
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=134.26 Aligned_cols=143 Identities=21% Similarity=0.182 Sum_probs=121.9
Q ss_pred CCCCCcccEEEccCCcccccC-CccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCC--CCCCC
Q 036331 1 MGNLKSLLQLDLSENQLSGSI-PLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPS--IGNLS 77 (147)
Q Consensus 1 l~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~--~~~l~ 77 (147)
|.++++|++|++++|...+.+ |..+.++++|++|++++|.+.+..|..+..+++|+++++++|.+.+..+.. +..++
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 467899999999999766566 667999999999999999999788999999999999999999998755554 88999
Q ss_pred CCcEEEccCCccccCch-HHhhcCCcccEEEccCceeeecchHhhhhc--ccCcEEEeecCcccccccc
Q 036331 78 SLRNLSLFNNGLYSSIP-EEIGYLMSVSELELCTIILVGLFLIQLVAL--HLCLHLRLHRWTVSVLLAT 143 (147)
Q Consensus 78 ~L~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l--~~L~~l~l~~n~i~~~~~~ 143 (147)
+|++|++++|.+.+..+ ..++.+++|+.|++++|.+.+..+..+..+ ++|+.|+++.|.+.+..+.
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~ 192 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV 192 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCC
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccccc
Confidence 99999999999976655 578899999999999999998888777776 7788888888877775543
No 68
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=1.6e-19 Score=139.02 Aligned_cols=117 Identities=17% Similarity=0.097 Sum_probs=60.0
Q ss_pred CCccCCCCCCccEEecccccccc-----------------CCCcccC--CCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 21 IPLSFGNLSSLTMKSPFSNSLSG-----------------SIPPILG--NLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 21 ~~~~~~~~~~L~~l~l~~~~~~~-----------------~~~~~~~--~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
+|..+.++++|+.|++++|.+++ .+|..+. .+++|+++++++|.+.+..|..+..+++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 44444555555555555555553 1455544 5555555555555555455555555555555
Q ss_pred EEccCCc-ccc-CchHHhhcCC-------cccEEEccCceeeecchH--hhhhcccCcEEEeecCccc
Q 036331 82 LSLFNNG-LYS-SIPEEIGYLM-------SVSELELCTIILVGLFLI--QLVALHLCLHLRLHRWTVS 138 (147)
Q Consensus 82 l~l~~n~-l~~-~~~~~~~~~~-------~L~~l~l~~n~~~~~~~~--~~~~l~~L~~l~l~~n~i~ 138 (147)
+++++|. +.+ .+|..++.++ +|+.|++++|.+. .+|. .+..+++|++|++++|.++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc
Confidence 5555554 444 4454444433 5555555555555 3444 4555555555555555554
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=3.9e-19 Score=118.55 Aligned_cols=139 Identities=20% Similarity=0.120 Sum_probs=74.7
Q ss_pred CCCCcccEEEccCCc-ccccCCccCCCCCCccEEeccc-cccccCCCcccCCCCCCCEEEcccCc---------------
Q 036331 2 GNLKSLLQLDLSENQ-LSGSIPLSFGNLSSLTMKSPFS-NSLSGSIPPILGNLKSLSTLRLHVNQ--------------- 64 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~l~~L~~l~l~~n~--------------- 64 (147)
.++++|++|++++|. +....+..+.++++|+.+++++ |.++...+..+..+++|+++++++|.
T Consensus 52 ~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~ 131 (239)
T 2xwt_C 52 SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDI 131 (239)
T ss_dssp TTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCS
T ss_pred cCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccccccccccccc
Confidence 345556666666664 4422223455555555555555 55553333444555555555555554
Q ss_pred -----------ccccCCCCCCCCCCCc-EEEccCCccccCchHHhhcCCcccEEEccCce-eeecchHhhhhc-ccCcEE
Q 036331 65 -----------LNGVIPPSIGNLSSLR-NLSLFNNGLYSSIPEEIGYLMSVSELELCTII-LVGLFLIQLVAL-HLCLHL 130 (147)
Q Consensus 65 -----------~~~~~~~~~~~l~~L~-~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~l-~~L~~l 130 (147)
+++..+..+..+++|+ ++++++|.+. .+|......++|+.+++++|. +.+..+..+..+ ++|++|
T Consensus 132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L 210 (239)
T 2xwt_C 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210 (239)
T ss_dssp EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEE
T ss_pred ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEE
Confidence 4433333455555666 6666666653 444332223566666666663 655555566666 667777
Q ss_pred EeecCcccccc
Q 036331 131 RLHRWTVSVLL 141 (147)
Q Consensus 131 ~l~~n~i~~~~ 141 (147)
++++|.+++..
T Consensus 211 ~l~~N~l~~l~ 221 (239)
T 2xwt_C 211 DVSQTSVTALP 221 (239)
T ss_dssp ECTTCCCCCCC
T ss_pred ECCCCccccCC
Confidence 77777666543
No 70
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.78 E-value=6.3e-19 Score=125.07 Aligned_cols=134 Identities=13% Similarity=0.120 Sum_probs=73.5
Q ss_pred CcccEEEccCCcccccCCcc-CCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEE
Q 036331 5 KSLLQLDLSENQLSGSIPLS-FGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLS 83 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~ 83 (147)
++++.++++++.+. .+|.. +..+++|+++++++|.+....+..+..+++|+++++++|.+.+..|..+..+++|++++
T Consensus 45 ~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45555666655554 33333 44555566666666655544444555556666666666655544444555555666666
Q ss_pred ccCCccccCchH-HhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccc
Q 036331 84 LFNNGLYSSIPE-EIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVL 140 (147)
Q Consensus 84 l~~n~l~~~~~~-~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~ 140 (147)
+++|.+. .+|. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++.
T Consensus 124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred CCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 6666553 3333 235555666666666655555555555555666666665555543
No 71
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.78 E-value=5.3e-20 Score=141.71 Aligned_cols=134 Identities=13% Similarity=0.138 Sum_probs=97.1
Q ss_pred CCCCcccEEEccCCcccc-----------------cCCccCC--CCCCccEEeccccccccCCCcccCCCCCCCEEEccc
Q 036331 2 GNLKSLLQLDLSENQLSG-----------------SIPLSFG--NLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHV 62 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~-----------------~~~~~~~--~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~ 62 (147)
.++++|++|++++|.+.+ .+|+.+. ++++|+.|++++|.+.+.+|..+..+++|+.+++++
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 467788888888888876 3777766 888888888888887777888888888888888888
Q ss_pred Cc-ccc-cCCCCCC-------CCCCCcEEEccCCccccCchH--HhhcCCcccEEEccCceeeecchHhhhhcccCcEEE
Q 036331 63 NQ-LNG-VIPPSIG-------NLSSLRNLSLFNNGLYSSIPE--EIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLR 131 (147)
Q Consensus 63 n~-~~~-~~~~~~~-------~l~~L~~l~l~~n~l~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~ 131 (147)
|. +++ ..|..+. .+++|+++++++|.+. .+|. .+..+++|+.|++++|.+. .+| .+..+++|++|+
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLK 601 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEE
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEE
Confidence 87 665 4554333 3447777777777775 6666 6777777777777777766 455 666666666677
Q ss_pred eecCccc
Q 036331 132 LHRWTVS 138 (147)
Q Consensus 132 l~~n~i~ 138 (147)
+++|.++
T Consensus 602 Ls~N~l~ 608 (876)
T 4ecn_A 602 LDYNQIE 608 (876)
T ss_dssp CCSSCCS
T ss_pred CcCCccc
Confidence 7666666
No 72
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.78 E-value=3.1e-18 Score=128.93 Aligned_cols=141 Identities=19% Similarity=0.147 Sum_probs=95.5
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCC--------cccCCCCCCCEEEcccCcccccCCCCC
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIP--------PILGNLKSLSTLRLHVNQLNGVIPPSI 73 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~--------~~~~~l~~L~~l~l~~n~~~~~~~~~~ 73 (147)
.++++|++|++++|.+.+..+..+.++++|+.+++++|.+++..+ ..+..+++|+++++++|.++...+..+
T Consensus 477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~ 556 (680)
T 1ziw_A 477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF 556 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHc
Confidence 345666677777776664444446667777777777776653211 125566777777777777773333457
Q ss_pred CCCCCCcEEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhh-hcccCcEEEeecCccccccc
Q 036331 74 GNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLV-ALHLCLHLRLHRWTVSVLLA 142 (147)
Q Consensus 74 ~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~-~l~~L~~l~l~~n~i~~~~~ 142 (147)
..+++|+++++++|.+.+..+..+..+++|+.+++++|.+++..+..+. .+++|+++++++|++.+.+.
T Consensus 557 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 7777888888888877644444566778888888888888877766666 67888888888888877765
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=1.9e-19 Score=124.52 Aligned_cols=140 Identities=16% Similarity=0.040 Sum_probs=110.5
Q ss_pred CCCCcccEEEccCCcccccCCccCCCC-----CCccEEeccccccccCCCcccCCCCCCCEEEcccCccccc--CCCCC-
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNL-----SSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGV--IPPSI- 73 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~-----~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~--~~~~~- 73 (147)
..+++|++|++++|.+.+. |..+..+ ++|+++++++|.+.+..+..+..+++|+++++++|.+.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 6788999999999999865 7666665 8999999999999977778899999999999999987643 23333
Q ss_pred -CCCCCCcEEEccCCcccc--CchH-HhhcCCcccEEEccCceeeecch-HhhhhcccCcEEEeecCcccccccc
Q 036331 74 -GNLSSLRNLSLFNNGLYS--SIPE-EIGYLMSVSELELCTIILVGLFL-IQLVALHLCLHLRLHRWTVSVLLAT 143 (147)
Q Consensus 74 -~~l~~L~~l~l~~n~l~~--~~~~-~~~~~~~L~~l~l~~n~~~~~~~-~~~~~l~~L~~l~l~~n~i~~~~~~ 143 (147)
..+++|+++++++|.+.+ .++. .+..+++|+.|++++|.+.+..| ..+..+++|++|++++|.|+ .+|.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~ 270 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK 270 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCS
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhh
Confidence 678899999999999852 2333 33567899999999999988664 45566788999999999887 3443
No 74
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=7.9e-19 Score=130.76 Aligned_cols=112 Identities=21% Similarity=0.190 Sum_probs=52.0
Q ss_pred CCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEE
Q 036331 4 LKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLS 83 (147)
Q Consensus 4 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~ 83 (147)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+++++++|.+.+..+..+..+++|++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 34444555555544433333444445555555555554433344444445555555555544422222234444555555
Q ss_pred ccCCccccCchHHhhcCCcccEEEccCceeee
Q 036331 84 LFNNGLYSSIPEEIGYLMSVSELELCTIILVG 115 (147)
Q Consensus 84 l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 115 (147)
+++|.+.+..|..+..+++|+.|++++|.+.+
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 55554444444444444555555555554443
No 75
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.78 E-value=5.1e-19 Score=130.21 Aligned_cols=139 Identities=24% Similarity=0.204 Sum_probs=110.7
Q ss_pred CCCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccc-cCCCCCCCCCCC
Q 036331 1 MGNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNG-VIPPSIGNLSSL 79 (147)
Q Consensus 1 l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~-~~~~~~~~l~~L 79 (147)
+.++++|++|++++|++.+..|..+.++++|++|++++|.+.+..+..+..+++|+++++++|.+.+ ..|..+..+++|
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence 4678899999999999987677788899999999999999986656668899999999999999875 346678888999
Q ss_pred cEEEccCCccccCch-HHhhcCCcccEEEccCceeeecchHhhhh------------------------cccCcEEEeec
Q 036331 80 RNLSLFNNGLYSSIP-EEIGYLMSVSELELCTIILVGLFLIQLVA------------------------LHLCLHLRLHR 134 (147)
Q Consensus 80 ~~l~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~~~~~------------------------l~~L~~l~l~~ 134 (147)
+++++++|...+.+| ..+..+++|++|++++|.+.+..|..+.. +++|+++++++
T Consensus 126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 205 (549)
T 2z81_A 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205 (549)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEES
T ss_pred cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccC
Confidence 999999988545555 46788888999999888888766665544 55666666666
Q ss_pred Ccccc
Q 036331 135 WTVSV 139 (147)
Q Consensus 135 n~i~~ 139 (147)
|.+++
T Consensus 206 n~l~~ 210 (549)
T 2z81_A 206 TNLAR 210 (549)
T ss_dssp CBCTT
T ss_pred Ccccc
Confidence 66665
No 76
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=127.50 Aligned_cols=133 Identities=20% Similarity=0.202 Sum_probs=100.7
Q ss_pred CcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccc--cCCCCCCCCCCCcEE
Q 036331 5 KSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNG--VIPPSIGNLSSLRNL 82 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~--~~~~~~~~l~~L~~l 82 (147)
.+|+.+++++|.+... + ....+++|+++++++|.+.+..|..+..+++|+++++++|.+.+ ..|..+..+++|+++
T Consensus 302 ~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L 379 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHM-L-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379 (520)
T ss_dssp CCCSEEEEESSCCCCC-C-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEE
T ss_pred CceeEEEcCCCccccc-c-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEE
Confidence 4699999999987632 2 12678999999999999998789999999999999999999985 455678899999999
Q ss_pred EccCCccccCchHH-hhcCCcccEEEccCceeeec---------------------chHhhhhcccCcEEEeecCcccc
Q 036331 83 SLFNNGLYSSIPEE-IGYLMSVSELELCTIILVGL---------------------FLIQLVALHLCLHLRLHRWTVSV 139 (147)
Q Consensus 83 ~l~~n~l~~~~~~~-~~~~~~L~~l~l~~n~~~~~---------------------~~~~~~~l~~L~~l~l~~n~i~~ 139 (147)
++++|.+.+.+|.. +..+++|+.|++++|.+++. +|..+..+++|++|++++|.++.
T Consensus 380 ~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~ 458 (520)
T 2z7x_B 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS 458 (520)
T ss_dssp ECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred ECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCc
Confidence 99999997756753 55556666666666555443 34444456666666666666654
No 77
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=1.7e-18 Score=120.58 Aligned_cols=140 Identities=21% Similarity=0.221 Sum_probs=90.2
Q ss_pred CcccEEEccCCcccccCCccCCCCCCccEEecccccccc--CCCcccCCC--------------------CCCCEEEccc
Q 036331 5 KSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSG--SIPPILGNL--------------------KSLSTLRLHV 62 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~--~~~~~~~~l--------------------~~L~~l~l~~ 62 (147)
++|++|++++|.+.+..+..+.++++|+.+++++|.+.. ..+..+..+ ++|+.+++++
T Consensus 123 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~ 202 (332)
T 2ft3_A 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDH 202 (332)
T ss_dssp TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCS
T ss_pred ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCC
Confidence 356666666666653333335556666666666655531 223322222 4566666777
Q ss_pred CcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccccc
Q 036331 63 NQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLA 142 (147)
Q Consensus 63 n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~ 142 (147)
|.+.+..+..+..+++|+++++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.|++..+
T Consensus 203 n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccCh
Confidence 7776555566777778888888888876665666777788888888888777 556667778888888888888776654
Q ss_pred ccc
Q 036331 143 TAL 145 (147)
Q Consensus 143 ~~~ 145 (147)
.+|
T Consensus 282 ~~~ 284 (332)
T 2ft3_A 282 NDF 284 (332)
T ss_dssp TSS
T ss_pred hHc
Confidence 443
No 78
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.77 E-value=1.4e-18 Score=111.05 Aligned_cols=133 Identities=17% Similarity=0.111 Sum_probs=110.8
Q ss_pred CCCcccEEEccCCcccccCCccCCCC-CCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 3 NLKSLLQLDLSENQLSGSIPLSFGNL-SSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
++.+|+.|++++|.+. .++. +..+ ++|+++++++|.+++. ..+..+++|+++++++|.+++..+..+..+++|++
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 5778999999999998 4554 4444 4999999999999854 67889999999999999999543344588999999
Q ss_pred EEccCCccccCchH--HhhcCCcccEEEccCceeeecchH---hhhhcccCcEEEeecCccccc
Q 036331 82 LSLFNNGLYSSIPE--EIGYLMSVSELELCTIILVGLFLI---QLVALHLCLHLRLHRWTVSVL 140 (147)
Q Consensus 82 l~l~~n~l~~~~~~--~~~~~~~L~~l~l~~n~~~~~~~~---~~~~l~~L~~l~l~~n~i~~~ 140 (147)
+++++|.+ +.+|. .+..+++|+.+++++|++....+. .+..+++|++++++.|.+...
T Consensus 93 L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 93 LILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp EECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred EECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 99999999 56666 788999999999999999854332 589999999999999987654
No 79
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=1.8e-17 Score=115.25 Aligned_cols=132 Identities=21% Similarity=0.207 Sum_probs=103.2
Q ss_pred CcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEc
Q 036331 5 KSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSL 84 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l 84 (147)
+.+++|++++|.+.+..+..+.++++|+++++++|.+++..|..+..+++|+++++++|.++ ..|..+. ++|+++++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEEC
Confidence 46788888888888555556888889999999988888666888888889999999888887 4565543 67888888
Q ss_pred cCCccccCchHHhhcCCcccEEEccCceeee--cchHhhhhcccCcEEEeecCcccc
Q 036331 85 FNNGLYSSIPEEIGYLMSVSELELCTIILVG--LFLIQLVALHLCLHLRLHRWTVSV 139 (147)
Q Consensus 85 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~--~~~~~~~~l~~L~~l~l~~n~i~~ 139 (147)
++|.+.+..+..+..+++|+.+++++|.+.. ..+..+.++++|++|++++|.++.
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 8888876666677888888888888888753 556677777777777777777664
No 80
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.77 E-value=2e-18 Score=127.72 Aligned_cols=140 Identities=21% Similarity=0.203 Sum_probs=88.3
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccC--CCcccCCCCCCCEEEcccCcccccCCC-CCCCCC-
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGS--IPPILGNLKSLSTLRLHVNQLNGVIPP-SIGNLS- 77 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~~~l~- 77 (147)
..+++|++|++++|.+.+..|..+.++++|+.+++++|.+++. .|..+..+++|+++++++|.+.+..|. .+..++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 4567778888888877766777777777777777777777632 234566777777777777777653443 244444
Q ss_pred ---------------------CCcEEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCc
Q 036331 78 ---------------------SLRNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWT 136 (147)
Q Consensus 78 ---------------------~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~ 136 (147)
+|+++++++|.+. .+|..+..+++|+.|++++|.+++..+..+..+++|+++++++|+
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 4555555555552 455555566666666666666664332336666666677777766
Q ss_pred cccccc
Q 036331 137 VSVLLA 142 (147)
Q Consensus 137 i~~~~~ 142 (147)
+.+.++
T Consensus 509 ~~c~c~ 514 (562)
T 3a79_B 509 WDCTCP 514 (562)
T ss_dssp BCCCHH
T ss_pred cCCCcc
Confidence 666554
No 81
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=2.1e-19 Score=136.48 Aligned_cols=138 Identities=26% Similarity=0.281 Sum_probs=89.5
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
..++.|+.|++++|.+. .+|..+.++++|+.|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+.+|++
T Consensus 221 ~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKY 297 (727)
T ss_dssp -CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSE
T ss_pred ccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCE
Confidence 34566777777777766 56666667777777777777776 66666777777777777777777 56767777777777
Q ss_pred EEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhccc-CcEEEeecCcccccccc
Q 036331 82 LSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHL-CLHLRLHRWTVSVLLAT 143 (147)
Q Consensus 82 l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~-L~~l~l~~n~i~~~~~~ 143 (147)
|++++|.+ +.+|..++.+++|+.|++++|.+.+.+|..+..+.. +..+++++|.+++..|.
T Consensus 298 L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 298 FYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp EECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred EECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 77777776 356666777777777777777777666665544321 12244555555554443
No 82
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.76 E-value=3e-18 Score=119.28 Aligned_cols=44 Identities=18% Similarity=0.001 Sum_probs=24.9
Q ss_pred HHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccc
Q 036331 95 EEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVS 138 (147)
Q Consensus 95 ~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~ 138 (147)
..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 211 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 254 (332)
T 2ft3_A 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254 (332)
T ss_dssp TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC
T ss_pred HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe
Confidence 34445555555555555555554445555666666666666555
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=9.6e-18 Score=115.04 Aligned_cols=127 Identities=25% Similarity=0.267 Sum_probs=63.1
Q ss_pred CCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEE
Q 036331 3 NLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNL 82 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l 82 (147)
.+++|+.|++++|.+.+ ++. +.++++|+.|++++|.++. .+ .+..+++|+++++++|.+.+ . +.+..+++|+++
T Consensus 66 ~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L 139 (291)
T 1h6t_A 66 YLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESL 139 (291)
T ss_dssp GCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEE
T ss_pred cCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEE
Confidence 34555666666665553 222 5555555555555555542 22 24555555555555555542 1 234445555555
Q ss_pred EccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccc
Q 036331 83 SLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSV 139 (147)
Q Consensus 83 ~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~ 139 (147)
++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++
T Consensus 140 ~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 140 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred EccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 5555555332 334445555555555555544332 4445555555555554444
No 84
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.75 E-value=1e-17 Score=123.93 Aligned_cols=132 Identities=21% Similarity=0.132 Sum_probs=80.2
Q ss_pred CcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEc
Q 036331 5 KSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSL 84 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l 84 (147)
+++++|++++|.+.+..+..+.++++|++|++++|.+++..|+.+..+++|+++++++|.++ .+|.. .+++|+++++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 35666666666666444455666666666666666666555666666666666666666666 34444 5666666666
Q ss_pred cCCcccc-CchHHhhcCCcccEEEccCceeeecchHhhhhcccC--cEEEeecCcc--ccccc
Q 036331 85 FNNGLYS-SIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLC--LHLRLHRWTV--SVLLA 142 (147)
Q Consensus 85 ~~n~l~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L--~~l~l~~n~i--~~~~~ 142 (147)
++|.+.+ ..|..++.+++|++|++++|.+.+. .+..+++| +++++++|.+ ++..+
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~ 188 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGET 188 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCc
Confidence 6666644 2345666666666666666666542 33444444 6666666666 44443
No 85
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.75 E-value=7.9e-18 Score=117.62 Aligned_cols=133 Identities=21% Similarity=0.239 Sum_probs=92.5
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
..+++|+.+++++|.+.+..+ +..+++|+.+++++|.+.. .+. +..+++|+++++++|.+++. +.+..+++|++
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~ 269 (347)
T 4fmz_A 196 ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKM 269 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCE
T ss_pred cCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCE
Confidence 346677777777777763322 6677777777777777763 333 66777777777777777632 45666777777
Q ss_pred EEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccccc
Q 036331 82 LSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLA 142 (147)
Q Consensus 82 l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~ 142 (147)
+++++|.+.+. +.+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus 270 L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 270 LNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp EECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred EEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 77777777443 346667777777777777777777777777777777777777776655
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=1.9e-17 Score=114.38 Aligned_cols=103 Identities=24% Similarity=0.359 Sum_probs=45.2
Q ss_pred CCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEE
Q 036331 4 LKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLS 83 (147)
Q Consensus 4 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~ 83 (147)
+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+ . ..+..+++|+++++++|.+++ .+ .+..+++|++++
T Consensus 62 l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~ 135 (308)
T 1h6u_A 62 LNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLY 135 (308)
T ss_dssp CTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCCCEEE
Confidence 4455555555555542 222 4455555555555555442 1 234444455555555554442 11 134444444444
Q ss_pred ccCCccccCchHHhhcCCcccEEEccCceee
Q 036331 84 LFNNGLYSSIPEEIGYLMSVSELELCTIILV 114 (147)
Q Consensus 84 l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 114 (147)
+++|.+.+. +. +..+++|+.|++++|.+.
T Consensus 136 l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 136 LDLNQITNI-SP-LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp CCSSCCCCC-GG-GGGCTTCCEEECCSSCCC
T ss_pred CCCCccCcC-cc-ccCCCCccEEEccCCcCC
Confidence 444444222 11 334444444444444443
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=1.9e-17 Score=114.37 Aligned_cols=128 Identities=23% Similarity=0.368 Sum_probs=63.1
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
.++++|++|++++|.+.+ ++ .+..+++|+.|++++|.+++ .+. +..+++|+.+++++|.+++. +. +..+++|++
T Consensus 82 ~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~ 155 (308)
T 1h6u_A 82 KNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQY 155 (308)
T ss_dssp TTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCE
T ss_pred ccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccE
Confidence 355666666666666553 22 45556666666666666552 222 45555555555555555422 11 444455555
Q ss_pred EEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccc
Q 036331 82 LSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSV 139 (147)
Q Consensus 82 l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~ 139 (147)
+++++|.+.+ ++. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++
T Consensus 156 L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~ 209 (308)
T 1h6u_A 156 LSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD 209 (308)
T ss_dssp EECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB
T ss_pred EEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc
Confidence 5555555432 222 4444455555555544443322 4444444444444444443
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=4.2e-18 Score=124.26 Aligned_cols=136 Identities=23% Similarity=0.176 Sum_probs=97.7
Q ss_pred CCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCC------------
Q 036331 4 LKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPP------------ 71 (147)
Q Consensus 4 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~------------ 71 (147)
+++|+.|++++|.+.+..|..+.++++|++|++++|.+++..+ +..+++|+++++++|.+++..+.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~ 110 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN 110 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCc
Confidence 4578999999999887666778888999999999998875444 77888888888888877632110
Q ss_pred ----CCCCCCCCcEEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhh-hcccCcEEEeecCcccccc
Q 036331 72 ----SIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLV-ALHLCLHLRLHRWTVSVLL 141 (147)
Q Consensus 72 ----~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~-~l~~L~~l~l~~n~i~~~~ 141 (147)
....+++|+++++++|.+.+..|..++.+++|+.|++++|.+++..|..+. .+++|++|++++|.+++..
T Consensus 111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 011245677777777777666666677777888888888887776666665 5677777777777776653
No 89
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=2e-18 Score=125.90 Aligned_cols=132 Identities=19% Similarity=0.068 Sum_probs=95.4
Q ss_pred CCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccC-CCCCCCEEEcccCcccccCCCCCCCCCCCcEE
Q 036331 4 LKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILG-NLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNL 82 (147)
Q Consensus 4 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l 82 (147)
+++|+.|++++|.+.+..|..+.++++|+.|++++|.+++..|..+. .+++|+++++++|.+++. +. ...+++|+++
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L 196 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL 196 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEE
Confidence 45667777777777665566677777888888888877765666665 677888888888877754 22 3357788888
Q ss_pred EccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccc
Q 036331 83 SLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSV 139 (147)
Q Consensus 83 ~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~ 139 (147)
++++|.+.+ +|+.+..+++|+.|++++|.+++ +|..+..+++|+++++++|.+.+
T Consensus 197 ~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c 251 (487)
T 3oja_A 197 DLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC 251 (487)
T ss_dssp ECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCH
T ss_pred ECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcC
Confidence 888888754 45557778888888888888875 45667777888888888888873
No 90
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.74 E-value=2.1e-17 Score=102.72 Aligned_cols=114 Identities=17% Similarity=0.138 Sum_probs=102.3
Q ss_pred CCCCccEEeccccccc-cCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCcccE
Q 036331 27 NLSSLTMKSPFSNSLS-GSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSE 105 (147)
Q Consensus 27 ~~~~L~~l~l~~~~~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~ 105 (147)
..++++.+++++|.+. +.+|..+..+++|+++++++|.+.+. ..+..+++|+++++++|.+.+.+|..+..+++|+.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3578999999999998 67888889999999999999999854 77889999999999999998778888888999999
Q ss_pred EEccCceeeec-chHhhhhcccCcEEEeecCccccccc
Q 036331 106 LELCTIILVGL-FLIQLVALHLCLHLRLHRWTVSVLLA 142 (147)
Q Consensus 106 l~l~~n~~~~~-~~~~~~~l~~L~~l~l~~n~i~~~~~ 142 (147)
+++++|.+++. .+..+..+++|++|++++|.+++..+
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTT
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHH
Confidence 99999999974 34789999999999999999988765
No 91
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=1.6e-17 Score=107.54 Aligned_cols=113 Identities=22% Similarity=0.274 Sum_probs=102.7
Q ss_pred cccEEEccCCcccccCCc-cCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEc
Q 036331 6 SLLQLDLSENQLSGSIPL-SFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSL 84 (147)
Q Consensus 6 ~L~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l 84 (147)
+++.|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|+++++++|.+++..+..+..+++|+++++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 789999999999855544 3889999999999999999877999999999999999999999877788999999999999
Q ss_pred cCCccccCchHHhhcCCcccEEEccCceeeecch
Q 036331 85 FNNGLYSSIPEEIGYLMSVSELELCTIILVGLFL 118 (147)
Q Consensus 85 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 118 (147)
++|.+.+..|..+..+++|+.+++++|++.+..+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 9999988888889999999999999999997654
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.74 E-value=3.5e-18 Score=118.01 Aligned_cols=111 Identities=15% Similarity=0.026 Sum_probs=49.2
Q ss_pred CCCCccEEeccccccccCCCcccCCCCCCCEEEcccCccccc--C--CCCCCCCCCCcEEEccCCccccCchH----Hhh
Q 036331 27 NLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGV--I--PPSIGNLSSLRNLSLFNNGLYSSIPE----EIG 98 (147)
Q Consensus 27 ~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~--~--~~~~~~l~~L~~l~l~~n~l~~~~~~----~~~ 98 (147)
.+++|++|++++|.+.+..+..+..+++|+++++++|.+.+. . +..+..+++|+++++++|.+. .++. .+.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 344444444444444433334444444455555544443221 1 111233444455555554442 1222 123
Q ss_pred cCCcccEEEccCceeeecchHhhhhc---ccCcEEEeecCccc
Q 036331 99 YLMSVSELELCTIILVGLFLIQLVAL---HLCLHLRLHRWTVS 138 (147)
Q Consensus 99 ~~~~L~~l~l~~n~~~~~~~~~~~~l---~~L~~l~l~~n~i~ 138 (147)
.+++|++|++++|.+.+..|..+..+ ++|++|++++|.|+
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 44555555555555554444444433 35555555555555
No 93
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.74 E-value=3.2e-18 Score=118.56 Aligned_cols=132 Identities=19% Similarity=0.068 Sum_probs=102.2
Q ss_pred CCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccC-CCCCCCEEEcccCcccccCCCCCCCCCCCcEE
Q 036331 4 LKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILG-NLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNL 82 (147)
Q Consensus 4 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l 82 (147)
+++|+.|++++|.+.+..+..+..+++|+.+++++|.+.+..+..+. .+++|+++++++|.+++. +. ...+++|+++
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L 196 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTL 196 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEE
Confidence 45677777777777755555677788888888888888865555553 678888999988888754 32 3347889999
Q ss_pred EccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccc
Q 036331 83 SLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSV 139 (147)
Q Consensus 83 ~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~ 139 (147)
++++|.+. .+|..+..+++|+.|++++|.+.+ +|..+..+++|+++++++|.+.+
T Consensus 197 ~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 197 DLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp ECCSSCCC-EECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBH
T ss_pred ECCCCcCC-cchhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccC
Confidence 99999885 455568888999999999998885 56678888999999999998883
No 94
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=2.2e-17 Score=111.75 Aligned_cols=128 Identities=23% Similarity=0.270 Sum_probs=62.7
Q ss_pred CCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCC-------------
Q 036331 4 LKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIP------------- 70 (147)
Q Consensus 4 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~------------- 70 (147)
+++|+.|++++|.+. .++ .+..+++|+.|++++|.+++ .+. +..+++|+++++++|.+++ .+
T Consensus 40 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~~~~~L~~L~L~ 114 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGIPSACLSRLFLD 114 (263)
T ss_dssp HTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTCCCSSCCEEECC
T ss_pred cCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCccccCcccEEEcc
Confidence 344555555555544 233 34445555555555555542 222 4455555555555555442 22
Q ss_pred -------CCCCCCCCCcEEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccc
Q 036331 71 -------PSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVL 140 (147)
Q Consensus 71 -------~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~ 140 (147)
+.+..+++|+++++++|.+.+ ++ .+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++.
T Consensus 115 ~N~l~~~~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 115 NNELRDTDSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SSCCSBSGGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCccCCChhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 234445555555555555532 22 344555555555555555543 3455555555555555555443
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=2.5e-17 Score=112.98 Aligned_cols=131 Identities=27% Similarity=0.278 Sum_probs=113.1
Q ss_pred CCCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCc
Q 036331 1 MGNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLR 80 (147)
Q Consensus 1 l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~ 80 (147)
+.++++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+.. . ..+..+++|+.+++++|.+++. ..+..+++|+
T Consensus 86 l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~ 159 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD 159 (291)
T ss_dssp GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCC
Confidence 3578999999999999874 43 48899999999999999984 3 5678899999999999999854 6788899999
Q ss_pred EEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccccc
Q 036331 81 NLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLL 141 (147)
Q Consensus 81 ~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~ 141 (147)
++++++|.+.+..+ +..+++|+.|++++|.+.+. + .+..+++|+.|++++|.++...
T Consensus 160 ~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 160 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECCC
T ss_pred EEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCCc
Confidence 99999999965544 88999999999999999875 3 4899999999999999987643
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.74 E-value=5.4e-18 Score=117.08 Aligned_cols=139 Identities=13% Similarity=0.016 Sum_probs=96.8
Q ss_pred CcccEEEccCCcccccCCccC--CCCCCccEEeccccccccCCC----cccCCCCCCCEEEcccCcccccCCCCCCCCCC
Q 036331 5 KSLLQLDLSENQLSGSIPLSF--GNLSSLTMKSPFSNSLSGSIP----PILGNLKSLSTLRLHVNQLNGVIPPSIGNLSS 78 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~~--~~~~~L~~l~l~~~~~~~~~~----~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~ 78 (147)
++|++|++++|.+.+..|..+ ..+++|+++++++|.+.+..+ ..+..+++|+++++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 457888888888877777766 777888888888888775333 23345778888888888887666677777888
Q ss_pred CcEEEccCCccccC--chH--HhhcCCcccEEEccCceeeecc--hH-hhhhcccCcEEEeecCcccccccc
Q 036331 79 LRNLSLFNNGLYSS--IPE--EIGYLMSVSELELCTIILVGLF--LI-QLVALHLCLHLRLHRWTVSVLLAT 143 (147)
Q Consensus 79 L~~l~l~~n~l~~~--~~~--~~~~~~~L~~l~l~~n~~~~~~--~~-~~~~l~~L~~l~l~~n~i~~~~~~ 143 (147)
|+++++++|.+.+. ++. .+..+++|+.|++++|.++... +. .+..+++|++|++++|.+.+..|.
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~ 242 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP 242 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence 88888888876432 221 2356778888888888776321 11 246678888888888888776543
No 97
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.74 E-value=4.1e-17 Score=113.99 Aligned_cols=129 Identities=26% Similarity=0.300 Sum_probs=98.6
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
..+++|++|++++|.+.+ .+. +..+++|+.+++++|.+.. . +.+..+++|+++++++|.+.+. +.+..+++|++
T Consensus 218 ~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~ 291 (347)
T 4fmz_A 218 ANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNS 291 (347)
T ss_dssp GGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred hcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCE
Confidence 356788888888888774 333 7778888888888888773 2 4577788888888888888743 45677788888
Q ss_pred EEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccc
Q 036331 82 LSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVS 138 (147)
Q Consensus 82 l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~ 138 (147)
+++++|.+.+..+..+..+++|+.+++++|.+++..| +..+++|+++++++|.|+
T Consensus 292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8888888877777778888888888888888887655 778888888888888775
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=2.4e-17 Score=111.61 Aligned_cols=124 Identities=19% Similarity=0.200 Sum_probs=83.8
Q ss_pred CcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEc
Q 036331 5 KSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSL 84 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l 84 (147)
.+++.+++.++.+.+ ++ .+..+++|+.+++++|.+. .++ .+..+++|+.+++++|.+++. +. +..+++|+++++
T Consensus 19 ~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEEC
Confidence 345666778888763 44 5678899999999999998 555 688899999999999999854 44 888899999999
Q ss_pred cCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccc
Q 036331 85 FNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSV 139 (147)
Q Consensus 85 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~ 139 (147)
++|.+.+ +|.. .. ++|+.|++++|.+.+. +.+..+++|++|++++|.+++
T Consensus 93 ~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 93 NRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp CSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB
T ss_pred CCCccCC-cCcc-cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC
Confidence 9988754 3321 11 4455555555544432 124444444444444444443
No 99
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=4.7e-17 Score=121.40 Aligned_cols=127 Identities=24% Similarity=0.250 Sum_probs=62.6
Q ss_pred CCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEE
Q 036331 3 NLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNL 82 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l 82 (147)
.+++|+.|++++|.+.+. +. +..+++|+.|++++|.+.. .+ .+..+++|+.|++++|.+.+ . +.+..+++|+.|
T Consensus 63 ~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L 136 (605)
T 1m9s_A 63 YLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESL 136 (605)
T ss_dssp GCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEE
T ss_pred cCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEE
Confidence 455666666666665532 22 4555555555555555552 22 44555555555555555542 1 234444555555
Q ss_pred EccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccc
Q 036331 83 SLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSV 139 (147)
Q Consensus 83 ~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~ 139 (147)
++++|.+.+. ..+..+++|+.|++++|.+.+..| +..+++|++|++++|.|++
T Consensus 137 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 137 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp ECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 5555554322 334444555555555555444333 4444444444444444443
No 100
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.72 E-value=7.8e-17 Score=104.41 Aligned_cols=111 Identities=27% Similarity=0.296 Sum_probs=100.7
Q ss_pred CcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEc
Q 036331 5 KSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSL 84 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l 84 (147)
++++.|++++|.+. .+|..+.++++|+.|++++|.++...+..+..+++|+++++++|.+++..+..+..+++|+++++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 47999999999998 78888999999999999999999777788999999999999999999777788999999999999
Q ss_pred cCCccccCchHHhhcCCcccEEEccCceeeec
Q 036331 85 FNNGLYSSIPEEIGYLMSVSELELCTIILVGL 116 (147)
Q Consensus 85 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 116 (147)
++|.+....+..+..+++|+.+++++|++...
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 99999765555688899999999999999864
No 101
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.72 E-value=1.2e-16 Score=101.97 Aligned_cols=115 Identities=25% Similarity=0.204 Sum_probs=98.7
Q ss_pred CCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEE
Q 036331 4 LKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLS 83 (147)
Q Consensus 4 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~ 83 (147)
.++|+.|++++|.+.+..+..+..+++|+++++++|.++...+..+..+++|+++++++|.+++..+..+..+++|++++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 36899999999999855555678999999999999999966566678999999999999999966566678899999999
Q ss_pred ccCCccccCchHHhhcCCcccEEEccCceeeecch
Q 036331 84 LFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFL 118 (147)
Q Consensus 84 l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~ 118 (147)
+++|.+.+..+..+..+++|+.+++++|++.+..+
T Consensus 107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99999965544456789999999999999998765
No 102
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.72 E-value=4.3e-18 Score=129.35 Aligned_cols=121 Identities=21% Similarity=0.149 Sum_probs=106.2
Q ss_pred CCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcC
Q 036331 21 IPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYL 100 (147)
Q Consensus 21 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~ 100 (147)
.+..+..+++|+.|++++|.+. .+|..+..++.|++|++++|.++ .+|..+..+++|++|++++|.+. .+|..++.+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 4556888999999999999998 78888889999999999999999 78999999999999999999996 789999999
Q ss_pred CcccEEEccCceeeecchHhhhhcccCcEEEeecCcccccccccc
Q 036331 101 MSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLATAL 145 (147)
Q Consensus 101 ~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 145 (147)
++|+.|++++|.+. .+|..+..+++|++|++++|.+++..+..+
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 99999999999987 567789999999999999999998876554
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.71 E-value=9.7e-17 Score=101.58 Aligned_cols=114 Identities=19% Similarity=0.158 Sum_probs=101.6
Q ss_pred CCCCccEEeccccccc-cCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCcccE
Q 036331 27 NLSSLTMKSPFSNSLS-GSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSE 105 (147)
Q Consensus 27 ~~~~L~~l~l~~~~~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~ 105 (147)
..++++.+++++|.+. +.+|..+..+++|+++++++|.+.+. ..+..+++|+++++++|.+.+.+|..+..+++|+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 4588999999999997 67788888999999999999999854 77889999999999999998778888888999999
Q ss_pred EEccCceeeecch-HhhhhcccCcEEEeecCccccccc
Q 036331 106 LELCTIILVGLFL-IQLVALHLCLHLRLHRWTVSVLLA 142 (147)
Q Consensus 106 l~l~~n~~~~~~~-~~~~~l~~L~~l~l~~n~i~~~~~ 142 (147)
|++++|.+.+... ..+..+++|++|++++|.+++..+
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence 9999999987533 688999999999999999988754
No 104
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.71 E-value=1.6e-18 Score=120.57 Aligned_cols=138 Identities=17% Similarity=0.110 Sum_probs=78.1
Q ss_pred CCCcccEEEccCCccccc-CCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccC-ccccc-CCCCCCCCCCC
Q 036331 3 NLKSLLQLDLSENQLSGS-IPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVN-QLNGV-IPPSIGNLSSL 79 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n-~~~~~-~~~~~~~l~~L 79 (147)
++++|+.|++++|.+.+. ++..+..+++|+.|++++|.++...+..+..+++|+++++++| .+++. .+..+..+++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 355666666666665543 4555556666666666666665445555556666666666666 34431 33334455666
Q ss_pred cEEEccCC-ccccC-chHHhhcCC-cccEEEccCc--eee-ecchHhhhhcccCcEEEeecCc-cccc
Q 036331 80 RNLSLFNN-GLYSS-IPEEIGYLM-SVSELELCTI--ILV-GLFLIQLVALHLCLHLRLHRWT-VSVL 140 (147)
Q Consensus 80 ~~l~l~~n-~l~~~-~~~~~~~~~-~L~~l~l~~n--~~~-~~~~~~~~~l~~L~~l~l~~n~-i~~~ 140 (147)
+++++++| .+.+. ++..+..++ +|+.|++++| .++ +.++..+..+++|++|++++|. +++.
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 238 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKND 238 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGG
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHH
Confidence 66666666 55432 344455566 6666666666 333 3344455556666666666665 4443
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=9.3e-17 Score=119.79 Aligned_cols=129 Identities=28% Similarity=0.279 Sum_probs=113.6
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.+.. + ..+..+++|+.|++++|.+.+. ..+..+++|++
T Consensus 84 ~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 157 (605)
T 1m9s_A 84 TNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDT 157 (605)
T ss_dssp GGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSE
T ss_pred ccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCE
Confidence 568899999999999984 44 78899999999999999984 3 5588999999999999999854 67889999999
Q ss_pred EEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccc
Q 036331 82 LSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVL 140 (147)
Q Consensus 82 l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~ 140 (147)
|++++|.+.+..| +..+++|+.|++++|.+.+. +.+..+++|+.|++++|.+.+.
T Consensus 158 L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 158 LSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred EECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 9999999976555 88999999999999999875 4689999999999999999875
No 106
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.70 E-value=1.4e-16 Score=101.27 Aligned_cols=109 Identities=24% Similarity=0.234 Sum_probs=87.8
Q ss_pred cccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEcc
Q 036331 6 SLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLF 85 (147)
Q Consensus 6 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~ 85 (147)
..+.++++++++. .+|..+. ++++.|++++|.+++..+..+..+++|+++++++|++++..+..+..+++|++++++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3577888888887 5776653 788899999999887768888888999999999999886555667888899999999
Q ss_pred CCccccCchHHhhcCCcccEEEccCceeeecc
Q 036331 86 NNGLYSSIPEEIGYLMSVSELELCTIILVGLF 117 (147)
Q Consensus 86 ~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 117 (147)
+|.+.+..+..+..+++|+.|++++|++....
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 99886655556788889999999999887654
No 107
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=9.1e-17 Score=119.10 Aligned_cols=121 Identities=24% Similarity=0.211 Sum_probs=78.8
Q ss_pred cccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEcc
Q 036331 6 SLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLF 85 (147)
Q Consensus 6 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~ 85 (147)
.|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+++|+++++++|.+++ +| .+..+++|++|+++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 35667777776663 554 666677777777777776 666667777777777777777664 44 56666777777777
Q ss_pred CCccccCc-hHHhhcCCcccEEEccCceeeecchH---hhhhcccCcEEE
Q 036331 86 NNGLYSSI-PEEIGYLMSVSELELCTIILVGLFLI---QLVALHLCLHLR 131 (147)
Q Consensus 86 ~n~l~~~~-~~~~~~~~~L~~l~l~~n~~~~~~~~---~~~~l~~L~~l~ 131 (147)
+|.+.+.. |..++.+++|+.|++++|.+++.++. .+..+++|+.|+
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 77765554 66666777777777777776655332 334466666664
No 108
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=1.4e-17 Score=115.41 Aligned_cols=137 Identities=23% Similarity=0.177 Sum_probs=101.9
Q ss_pred CCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCC-----------
Q 036331 3 NLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPP----------- 71 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~----------- 71 (147)
.+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+ +..+++|+++++++|.+++..+.
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n 109 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANN 109 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCC
Confidence 35678888998888886555678888888888888888874433 77888888888888877642100
Q ss_pred -----CCCCCCCCcEEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhh-hhcccCcEEEeecCcccccc
Q 036331 72 -----SIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQL-VALHLCLHLRLHRWTVSVLL 141 (147)
Q Consensus 72 -----~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~-~~l~~L~~l~l~~n~i~~~~ 141 (147)
....+++|+++++++|.+.+..+..+..+++|+.|++++|.+.+..+..+ ..+++|++|++++|.+++..
T Consensus 110 ~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 185 (317)
T 3o53_A 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (317)
T ss_dssp CCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred ccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence 01134567888888888866555577788889999999998888766665 46888999999999887764
No 109
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.70 E-value=1.4e-16 Score=115.49 Aligned_cols=128 Identities=30% Similarity=0.391 Sum_probs=54.5
Q ss_pred CCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEE
Q 036331 4 LKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLS 83 (147)
Q Consensus 4 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~ 83 (147)
+++|+.|++++|.+.+..+ +..+++|+.+++++|.+.+. +. +..+++|+.+++++|.+.+.. . +..+++|++++
T Consensus 242 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~-~-~~~l~~L~~L~ 315 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDIS-P-ISNLKNLTYLT 315 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCCG-G-GGGCTTCSEEE
T ss_pred CCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCch-h-hcCCCCCCEEE
Confidence 3444444444444442211 34444444444444444421 21 344444444444444444221 1 33444444444
Q ss_pred ccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccccc
Q 036331 84 LFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLL 141 (147)
Q Consensus 84 l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~ 141 (147)
+++|.+.+..| +..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++..
T Consensus 316 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCG
T ss_pred CcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccc
Confidence 44444433322 33444444444444444432 23444444444444444444433
No 110
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.69 E-value=2.2e-16 Score=114.49 Aligned_cols=129 Identities=26% Similarity=0.348 Sum_probs=112.4
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
..+++|+.|++++|.+.+ .+. +..+++|+.+++++|.+.+. +. +..+++|+.+++++|.+.+..| +..+++|++
T Consensus 262 ~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335 (466)
T ss_dssp TTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred hcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence 578899999999999985 443 78899999999999999844 33 7889999999999999986544 678999999
Q ss_pred EEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccccc
Q 036331 82 LSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVL 140 (147)
Q Consensus 82 l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~ 140 (147)
+++++|.+.+. ..+..+++|+.+++++|.+.+..| +..+++|++|++++|.+++.
T Consensus 336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 99999998654 468889999999999999998876 89999999999999999884
No 111
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.68 E-value=4.7e-16 Score=99.22 Aligned_cols=107 Identities=19% Similarity=0.179 Sum_probs=82.1
Q ss_pred cEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCC
Q 036331 8 LQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNN 87 (147)
Q Consensus 8 ~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n 87 (147)
+.++++++++. .+|..+. ++|+.|++++|.+.+..|..+..+++|+++++++|++++..+..+..+++|+++++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57788888876 6776654 78888888888888666778888888888888888888544445677888888888888
Q ss_pred ccccCchHHhhcCCcccEEEccCceeeecc
Q 036331 88 GLYSSIPEEIGYLMSVSELELCTIILVGLF 117 (147)
Q Consensus 88 ~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~ 117 (147)
.+.+..+..+..+++|+.|++++|++....
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 886544445778888888888888877543
No 112
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.67 E-value=8.6e-16 Score=97.60 Aligned_cols=110 Identities=23% Similarity=0.139 Sum_probs=94.6
Q ss_pred CccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCcccEEEcc
Q 036331 30 SLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSELELC 109 (147)
Q Consensus 30 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~ 109 (147)
..+.++++++.++ .+|..+ .+.++++++++|.+++..|..+..+++|+++++++|.+.+..+..+..+++|+.|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4578899999998 677665 3789999999999997778889999999999999999976555567889999999999
Q ss_pred CceeeecchHhhhhcccCcEEEeecCccccccc
Q 036331 110 TIILVGLFLIQLVALHLCLHLRLHRWTVSVLLA 142 (147)
Q Consensus 110 ~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~ 142 (147)
+|.+.+..+..+..+++|++|++++|++++.+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999998777789999999999999999987764
No 113
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.67 E-value=6.8e-19 Score=114.44 Aligned_cols=134 Identities=20% Similarity=0.164 Sum_probs=104.4
Q ss_pred CCcccEEEccCCcccccCCc------cCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCC
Q 036331 4 LKSLLQLDLSENQLSGSIPL------SFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLS 77 (147)
Q Consensus 4 l~~L~~l~l~~~~~~~~~~~------~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~ 77 (147)
...++.++++.+.+.+..|. .+..+++|+++++++|.+++ +| .+..+++|+++++++|.+. .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 34566666777777666665 67788899999999998884 56 7778889999999999888 5676666678
Q ss_pred CCcEEEccCCccccCchHHhhcCCcccEEEccCceeeecch-HhhhhcccCcEEEeecCccccccc
Q 036331 78 SLRNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFL-IQLVALHLCLHLRLHRWTVSVLLA 142 (147)
Q Consensus 78 ~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~l~~L~~l~l~~n~i~~~~~ 142 (147)
+|+++++++|.+.+ +| .+..+++|+.|++++|.+.+..+ ..+..+++|+++++++|.+++..+
T Consensus 94 ~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 94 TLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred cCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 89999999998854 45 57788889999999998886433 478888899999999998877643
No 114
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.67 E-value=7.3e-18 Score=117.27 Aligned_cols=135 Identities=19% Similarity=0.234 Sum_probs=101.9
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEecccc-cccc-CCCcccCCCCCCCEEEcccC-ccccc-CCCCCCCCC
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSN-SLSG-SIPPILGNLKSLSTLRLHVN-QLNGV-IPPSIGNLS 77 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~-~~~~-~~~~~~~~l~~L~~l~l~~n-~~~~~-~~~~~~~l~ 77 (147)
.++++|++|++++|.+.+..+..+..+++|+.|++++| .+++ ..+..+..+++|+++++++| .+++. .+..+..++
T Consensus 115 ~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 194 (336)
T 2ast_B 115 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 194 (336)
T ss_dssp TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred hhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence 46788899999998887667777778888999999888 5654 24555677888888888888 77643 355566677
Q ss_pred -CCcEEEccCC--ccc-cCchHHhhcCCcccEEEccCce-eeecchHhhhhcccCcEEEeecCc
Q 036331 78 -SLRNLSLFNN--GLY-SSIPEEIGYLMSVSELELCTII-LVGLFLIQLVALHLCLHLRLHRWT 136 (147)
Q Consensus 78 -~L~~l~l~~n--~l~-~~~~~~~~~~~~L~~l~l~~n~-~~~~~~~~~~~l~~L~~l~l~~n~ 136 (147)
+|+++++++| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|.
T Consensus 195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 8888888888 444 4556667778888888888887 666666677888888888888874
No 115
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.64 E-value=3.3e-15 Score=95.28 Aligned_cols=109 Identities=19% Similarity=0.135 Sum_probs=92.0
Q ss_pred ccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCcccEEEccC
Q 036331 31 LTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSELELCT 110 (147)
Q Consensus 31 L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~ 110 (147)
-+.++++++.+. .+|..+. +.++++++++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 468899999987 7777654 7899999999999977778888999999999999999665444567899999999999
Q ss_pred ceeeecchHhhhhcccCcEEEeecCccccccc
Q 036331 111 IILVGLFLIQLVALHLCLHLRLHRWTVSVLLA 142 (147)
Q Consensus 111 n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~ 142 (147)
|.+.+..+..+..+++|++|++++|.+.+...
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99998776678999999999999999887653
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=1e-15 Score=113.45 Aligned_cols=108 Identities=22% Similarity=0.262 Sum_probs=99.6
Q ss_pred CccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCcccEEEcc
Q 036331 30 SLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSELELC 109 (147)
Q Consensus 30 ~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~ 109 (147)
.|+.|++++|.++ .+|. +..+++|+.+++++|.++ .+|..+..+++|++|++++|.+.+ +| .++.+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 5889999999999 5676 899999999999999999 789999999999999999999965 67 78999999999999
Q ss_pred Cceeeecc-hHhhhhcccCcEEEeecCccccccc
Q 036331 110 TIILVGLF-LIQLVALHLCLHLRLHRWTVSVLLA 142 (147)
Q Consensus 110 ~n~~~~~~-~~~~~~l~~L~~l~l~~n~i~~~~~ 142 (147)
+|.+++.. |..+..+++|++|++++|.+++..+
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 99999887 8999999999999999999998754
No 117
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.63 E-value=4.5e-15 Score=107.53 Aligned_cols=127 Identities=16% Similarity=0.114 Sum_probs=74.6
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCC--------------------cccCCCCCCCEEEcc
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIP--------------------PILGNLKSLSTLRLH 61 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~--------------------~~~~~l~~L~~l~l~ 61 (147)
+++++|++|++++|.+.+ ++ +..+++|+++++++|.+++. + -.+..+++|+.++++
T Consensus 103 ~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCS 178 (457)
T ss_dssp TTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECC
T ss_pred CCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-ccccCCcCCEEECCCCCcccccccccCCcCCEEECC
Confidence 456666667776666653 32 55566666666666665532 1 023344555555555
Q ss_pred cCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccccc
Q 036331 62 VNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLL 141 (147)
Q Consensus 62 ~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~ 141 (147)
+|.+++ .| +..+++|+++++++|.+.+. .+..+++|+.|++++|.+.+ +| +..+++|++|++++|.+++..
T Consensus 179 ~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 179 FNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp SSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC
T ss_pred CCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC
Confidence 555553 22 44556666666666666432 25566677777777777666 33 666777777777777776654
No 118
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.62 E-value=1.1e-17 Score=118.61 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=6.5
Q ss_pred CCcccEEEccCCccc
Q 036331 4 LKSLLQLDLSENQLS 18 (147)
Q Consensus 4 l~~L~~l~l~~~~~~ 18 (147)
+++|++|++++|.+.
T Consensus 93 ~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFG 107 (386)
T ss_dssp CTTCCEEECCSCCCC
T ss_pred CCcccEEECCCCcCC
Confidence 344444444444443
No 119
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.62 E-value=1e-16 Score=113.58 Aligned_cols=138 Identities=17% Similarity=0.134 Sum_probs=105.0
Q ss_pred CcccEEEccCCccc-ccCC---ccCCCCCCccEEecccccccc-----CCCcccCCCCCCCEEEcccCccc----ccCCC
Q 036331 5 KSLLQLDLSENQLS-GSIP---LSFGNLSSLTMKSPFSNSLSG-----SIPPILGNLKSLSTLRLHVNQLN----GVIPP 71 (147)
Q Consensus 5 ~~L~~l~l~~~~~~-~~~~---~~~~~~~~L~~l~l~~~~~~~-----~~~~~~~~l~~L~~l~l~~n~~~----~~~~~ 71 (147)
++|++|++++|.+. ...+ ..+..+++|+.|++++|.+.. ..+..+..+++|+++++++|.++ ..+|.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 67888888888876 2333 345677888999998888762 23336778889999999999885 45667
Q ss_pred CCCCCCCCcEEEccCCccccC----chHHhhc--CCcccEEEccCceeee----cchHhh-hhcccCcEEEeecCccccc
Q 036331 72 SIGNLSSLRNLSLFNNGLYSS----IPEEIGY--LMSVSELELCTIILVG----LFLIQL-VALHLCLHLRLHRWTVSVL 140 (147)
Q Consensus 72 ~~~~l~~L~~l~l~~n~l~~~----~~~~~~~--~~~L~~l~l~~n~~~~----~~~~~~-~~l~~L~~l~l~~n~i~~~ 140 (147)
.+..+++|+++++++|.+.+. ++..+.. +++|+.|++++|.+.+ .+|..+ ..+++|++|++++|.+++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 777888899999999988654 4555533 8889999999999887 466666 5689999999999998876
Q ss_pred cc
Q 036331 141 LA 142 (147)
Q Consensus 141 ~~ 142 (147)
.+
T Consensus 319 ~~ 320 (386)
T 2ca6_A 319 DD 320 (386)
T ss_dssp SH
T ss_pred hh
Confidence 63
No 120
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.62 E-value=4e-15 Score=94.87 Aligned_cols=114 Identities=18% Similarity=0.084 Sum_probs=94.7
Q ss_pred cCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCcc
Q 036331 24 SFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSV 103 (147)
Q Consensus 24 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L 103 (147)
.+.++.+++.+++++|.++ .++......++|+++++++|.+++. ..+..+++|+++++++|.+.+..+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4567899999999999998 5555333344999999999999864 678899999999999999965444456899999
Q ss_pred cEEEccCceeeecchH--hhhhcccCcEEEeecCcccccc
Q 036331 104 SELELCTIILVGLFLI--QLVALHLCLHLRLHRWTVSVLL 141 (147)
Q Consensus 104 ~~l~l~~n~~~~~~~~--~~~~l~~L~~l~l~~n~i~~~~ 141 (147)
+.|++++|.+.. +|. .+..+++|++|++++|.++...
T Consensus 91 ~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~ 129 (176)
T 1a9n_A 91 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKK 129 (176)
T ss_dssp CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred CEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcH
Confidence 999999999975 444 7889999999999999997653
No 121
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=4.8e-17 Score=114.55 Aligned_cols=14 Identities=14% Similarity=0.060 Sum_probs=5.9
Q ss_pred cCcEEEeecCcccc
Q 036331 126 LCLHLRLHRWTVSV 139 (147)
Q Consensus 126 ~L~~l~l~~n~i~~ 139 (147)
+|++|++++|.|+.
T Consensus 197 ~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 197 SVTSLDLSANLLGL 210 (362)
T ss_dssp TCCEEECTTSCGGG
T ss_pred CCCEEECCCCCCCh
Confidence 44444444444433
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.62 E-value=2.4e-15 Score=111.49 Aligned_cols=122 Identities=24% Similarity=0.232 Sum_probs=77.8
Q ss_pred cccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEcc
Q 036331 6 SLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLF 85 (147)
Q Consensus 6 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~ 85 (147)
+|+.|++++|.+++ +|. .+++|+.|++++|.++ .+|. .+++|+++++++|.+++ +|. +. ++|++++++
T Consensus 121 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 121 SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVS 188 (571)
T ss_dssp TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECC
T ss_pred CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECc
Confidence 34444444444442 333 3455556666666555 2343 34567777777777664 455 43 678888888
Q ss_pred CCccccCchHHhhcCCcc-------cEEEccCceeeecchHhhhhcccCcEEEeecCccccccccc
Q 036331 86 NNGLYSSIPEEIGYLMSV-------SELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLATA 144 (147)
Q Consensus 86 ~n~l~~~~~~~~~~~~~L-------~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~ 144 (147)
+|.+. .+|. +.. +| +.|++++|.++. +|..+..+++|++|++++|.+++..+..
T Consensus 189 ~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 189 TNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp SSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred CCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 88774 5555 433 56 888888888884 6677777999999999999998876654
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=1.2e-16 Score=112.52 Aligned_cols=140 Identities=22% Similarity=0.100 Sum_probs=109.6
Q ss_pred CCcccEEEccCCcccccCC----ccCCCCC-CccEEeccccccccCCCcccCCC-----CCCCEEEcccCcccccCCCC-
Q 036331 4 LKSLLQLDLSENQLSGSIP----LSFGNLS-SLTMKSPFSNSLSGSIPPILGNL-----KSLSTLRLHVNQLNGVIPPS- 72 (147)
Q Consensus 4 l~~L~~l~l~~~~~~~~~~----~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~l-----~~L~~l~l~~n~~~~~~~~~- 72 (147)
.++|++|++++|.+.+..+ ..+..++ +|+.|++++|.+....+..+..+ ++|+++++++|.+++..+..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 3459999999999986555 5677788 89999999999986666666654 89999999999998655443
Q ss_pred ---CCCC-CCCcEEEccCCccccCchHHhhc-----CCcccEEEccCceeeecch----Hhhhhcc-cCcEEEeecCccc
Q 036331 73 ---IGNL-SSLRNLSLFNNGLYSSIPEEIGY-----LMSVSELELCTIILVGLFL----IQLVALH-LCLHLRLHRWTVS 138 (147)
Q Consensus 73 ---~~~l-~~L~~l~l~~n~l~~~~~~~~~~-----~~~L~~l~l~~n~~~~~~~----~~~~~l~-~L~~l~l~~n~i~ 138 (147)
+..+ ++|+++++++|.+.+..+..+.. .++|++|++++|.+.+... ..+..++ +|++|++++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 3344 78999999999997766655543 3699999999999986443 4455565 9999999999998
Q ss_pred ccccc
Q 036331 139 VLLAT 143 (147)
Q Consensus 139 ~~~~~ 143 (147)
+..+.
T Consensus 181 ~~~~~ 185 (362)
T 3goz_A 181 SKNCA 185 (362)
T ss_dssp GSCHH
T ss_pred hhhHH
Confidence 77654
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.61 E-value=2.4e-18 Score=111.89 Aligned_cols=131 Identities=24% Similarity=0.223 Sum_probs=110.4
Q ss_pred CCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEE
Q 036331 3 NLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNL 82 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l 82 (147)
++++|++|++++|.+.+ +| .+..+++|+.+++++|.+. .+|..+..+++|+++++++|.+++ .| .+..+++|+++
T Consensus 46 ~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVL 120 (198)
T ss_dssp HTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEE
T ss_pred cCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEE
Confidence 47889999999999985 67 8888999999999999998 778777778999999999999985 44 57788999999
Q ss_pred EccCCccccCch-HHhhcCCcccEEEccCceeeecchH----------hhhhcccCcEEEeecCccccc
Q 036331 83 SLFNNGLYSSIP-EEIGYLMSVSELELCTIILVGLFLI----------QLVALHLCLHLRLHRWTVSVL 140 (147)
Q Consensus 83 ~l~~n~l~~~~~-~~~~~~~~L~~l~l~~n~~~~~~~~----------~~~~l~~L~~l~l~~n~i~~~ 140 (147)
++++|.+.+..+ ..+..+++|+.+++++|.+.+.+|. .+..+++|+.|+ ++.++..
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~ 187 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD 187 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTT
T ss_pred ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHH
Confidence 999999954322 4688999999999999999876543 478899999987 7777653
No 125
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.61 E-value=1.2e-14 Score=105.34 Aligned_cols=78 Identities=23% Similarity=0.261 Sum_probs=36.0
Q ss_pred CCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEE
Q 036331 3 NLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNL 82 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l 82 (147)
.+++|++|++++|.+.+ +| +..+++|+++++++|.+++. + +..+++|+++++++|.+++ .+ +..+++|+++
T Consensus 62 ~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L 132 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYL 132 (457)
T ss_dssp GCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEE
T ss_pred ccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEE
Confidence 34455555555555543 22 44455555555555554421 2 4444455555555544442 22 3344444444
Q ss_pred EccCCcc
Q 036331 83 SLFNNGL 89 (147)
Q Consensus 83 ~l~~n~l 89 (147)
++++|.+
T Consensus 133 ~l~~N~l 139 (457)
T 3bz5_A 133 NCARNTL 139 (457)
T ss_dssp ECTTSCC
T ss_pred ECCCCcc
Confidence 4444444
No 126
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.57 E-value=7.7e-17 Score=116.32 Aligned_cols=137 Identities=18% Similarity=0.054 Sum_probs=78.0
Q ss_pred CCcccEEEccCCccccc----CCccCCCCCCccEEeccccccccCCCcccC-----CCCCCCEEEcccCccccc----CC
Q 036331 4 LKSLLQLDLSENQLSGS----IPLSFGNLSSLTMKSPFSNSLSGSIPPILG-----NLKSLSTLRLHVNQLNGV----IP 70 (147)
Q Consensus 4 l~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-----~l~~L~~l~l~~n~~~~~----~~ 70 (147)
+++|+.|++++|.++.. ++..+..+++|+.+++++|.+....+..+. ..++|+.+++++|.+++. ++
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 334 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS 334 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence 44555555555544421 333344455555555555555422111111 124566666666655532 23
Q ss_pred CCCCCCCCCcEEEccCCccccCchHHhhc-----CCcccEEEccCceeee----cchHhhhhcccCcEEEeecCccccc
Q 036331 71 PSIGNLSSLRNLSLFNNGLYSSIPEEIGY-----LMSVSELELCTIILVG----LFLIQLVALHLCLHLRLHRWTVSVL 140 (147)
Q Consensus 71 ~~~~~l~~L~~l~l~~n~l~~~~~~~~~~-----~~~L~~l~l~~n~~~~----~~~~~~~~l~~L~~l~l~~n~i~~~ 140 (147)
..+..+++|+++++++|.+.+..+..+.. .++|+.|++++|.+++ .++..+..+++|++|++++|.+++.
T Consensus 335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 33445577777777777775544444432 5677788888877775 5566777778888888888877665
No 127
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=1.3e-14 Score=101.74 Aligned_cols=141 Identities=21% Similarity=0.132 Sum_probs=70.6
Q ss_pred CCCcccEEEccCCcccccCCc-cCCCCCCccE-EeccccccccCCCcccCCCCCCCEEEcccCcccccCCCC--------
Q 036331 3 NLKSLLQLDLSENQLSGSIPL-SFGNLSSLTM-KSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPS-------- 72 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~~~~-~~~~~~~L~~-l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~-------- 72 (147)
++++|++|++++|.+.+.++. .|.+++++.. +.+.+|.+....+..+..+++|+++++++|.+....+..
T Consensus 52 ~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 131 (350)
T 4ay9_X 52 GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKV 131 (350)
T ss_dssp TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCE
T ss_pred CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhh
Confidence 444455555555444333332 2334444332 223334444333445555566666666665554221111
Q ss_pred -----------------CCCC-CCCcEEEccCCccccCchHHhhcCCcccEEEccC-ceeeecchHhhhhcccCcEEEee
Q 036331 73 -----------------IGNL-SSLRNLSLFNNGLYSSIPEEIGYLMSVSELELCT-IILVGLFLIQLVALHLCLHLRLH 133 (147)
Q Consensus 73 -----------------~~~l-~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~-n~~~~~~~~~~~~l~~L~~l~l~ 133 (147)
+..+ ..++.+++++|.+. .++.......+++.+++.+ |.+....+.+|.++++|++|+++
T Consensus 132 ~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs 210 (350)
T 4ay9_X 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210 (350)
T ss_dssp EEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECT
T ss_pred hhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcC
Confidence 1111 12444555555552 3333333344555666543 33443334577889999999999
Q ss_pred cCccccccccc
Q 036331 134 RWTVSVLLATA 144 (147)
Q Consensus 134 ~n~i~~~~~~~ 144 (147)
+|+|+...+.+
T Consensus 211 ~N~l~~lp~~~ 221 (350)
T 4ay9_X 211 RTRIHSLPSYG 221 (350)
T ss_dssp TSCCCCCCSSS
T ss_pred CCCcCccChhh
Confidence 99998765544
No 128
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.55 E-value=1.1e-14 Score=101.81 Aligned_cols=105 Identities=23% Similarity=0.092 Sum_probs=76.3
Q ss_pred EEEccCC-cccccCCccCCCCCCccEEeccc-cccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccC
Q 036331 9 QLDLSEN-QLSGSIPLSFGNLSSLTMKSPFS-NSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFN 86 (147)
Q Consensus 9 ~l~l~~~-~~~~~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~ 86 (147)
.++.+++ ++. .+|. +..+.+|+.|++++ |.+.+..+..+..+++|+.|++++|.+++..|..|..+++|++|++++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4567776 676 5777 77788888888885 888765567778888888888888888876667777888888888888
Q ss_pred CccccCchHHhhcCCcccEEEccCceeeec
Q 036331 87 NGLYSSIPEEIGYLMSVSELELCTIILVGL 116 (147)
Q Consensus 87 n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~ 116 (147)
|.+.+..+..+..++ |+.|++.+|.+...
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 888543333343333 88888888877754
No 129
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.55 E-value=4.6e-14 Score=105.63 Aligned_cols=83 Identities=23% Similarity=0.184 Sum_probs=68.0
Q ss_pred CCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEe
Q 036331 53 KSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRL 132 (147)
Q Consensus 53 ~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l 132 (147)
++|+.+++++|.+++ +| ..+++|+++++++|.+. .+|. .+++|+.|++++|.++ .+|..+..+++|+.|++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 678888888888874 45 34578999999999885 5565 5788999999999998 56788999999999999
Q ss_pred ecCccccccccc
Q 036331 133 HRWTVSVLLATA 144 (147)
Q Consensus 133 ~~n~i~~~~~~~ 144 (147)
++|.+++..+..
T Consensus 292 ~~N~l~~~~~~~ 303 (622)
T 3g06_A 292 EGNPLSERTLQA 303 (622)
T ss_dssp CSCCCCHHHHHH
T ss_pred cCCCCCCcCHHH
Confidence 999998876553
No 130
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=5.9e-14 Score=104.08 Aligned_cols=114 Identities=26% Similarity=0.254 Sum_probs=53.0
Q ss_pred CcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEc
Q 036331 5 KSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSL 84 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l 84 (147)
++|++|++++|.+. .+| ..+++|+.|++++|.+++ +|. +.. +|+++++++|.+++ +|. .+++|+++++
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 147 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINA 147 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeC
Confidence 34556666666555 344 234555555555555552 343 322 55555555555543 333 3444555555
Q ss_pred cCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccc
Q 036331 85 FNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVS 138 (147)
Q Consensus 85 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~ 138 (147)
++|.+.+ +|. .+++|+.|++++|.+++ +|. +. ++|++|++++|.|+
T Consensus 148 s~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 148 DNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 5554432 332 23444444444444443 222 22 44444444444444
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.53 E-value=3.8e-14 Score=99.38 Aligned_cols=140 Identities=19% Similarity=0.182 Sum_probs=101.5
Q ss_pred CcccEEEccCCcccccCCc-cCCCCCCccEEeccccccccCCC-cccCCCCCCCE-EEcccCcccccCCCCCCCCCCCcE
Q 036331 5 KSLLQLDLSENQLSGSIPL-SFGNLSSLTMKSPFSNSLSGSIP-PILGNLKSLST-LRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~-~~~~~l~~L~~-l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
+++++|++++|+++ .+|. .|.++++|++|++++|.+.+.++ ..|..+++++. +.+..|++....|+.+..+++|++
T Consensus 30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 46899999999998 4554 58899999999999999765444 56778888765 556678888777788899999999
Q ss_pred EEccCCccccCchHHhhcCCcccEEEccC-ceeeecchHhhhhcc-cCcEEEeecCcccccccccc
Q 036331 82 LSLFNNGLYSSIPEEIGYLMSVSELELCT-IILVGLFLIQLVALH-LCLHLRLHRWTVSVLLATAL 145 (147)
Q Consensus 82 l~l~~n~l~~~~~~~~~~~~~L~~l~l~~-n~~~~~~~~~~~~l~-~L~~l~l~~n~i~~~~~~~~ 145 (147)
+++++|.+....+..+....++..+++.+ +.+....+..+..+. .+++|++++|.|+...+.+|
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f 174 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF 174 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc
Confidence 99999988654444455556666777755 445544444555554 57778888887776555443
No 132
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.53 E-value=8e-14 Score=100.95 Aligned_cols=121 Identities=26% Similarity=0.285 Sum_probs=66.5
Q ss_pred CcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEc
Q 036331 5 KSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSL 84 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l 84 (147)
++|++|++++|.+.+ +| .+.++++|+++++++|.++ .+|... .+|+++++++|.+++ .| .+..+++|+++++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 356666666666653 55 4666666666666666665 234322 356666666666653 33 3555666666666
Q ss_pred cCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccc
Q 036331 85 FNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSV 139 (147)
Q Consensus 85 ~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~ 139 (147)
++|.+.+ +|.. .++|+.+++++|.+. .+| .+..+++|++|++++|.+++
T Consensus 203 ~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 203 DNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS
T ss_pred CCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc
Confidence 6665532 2221 134555555555555 333 25555666666666665554
No 133
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.52 E-value=4.3e-14 Score=98.82 Aligned_cols=107 Identities=21% Similarity=0.220 Sum_probs=85.9
Q ss_pred EEecccc-ccccCCCcccCCCCCCCEEEccc-CcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCcccEEEccC
Q 036331 33 MKSPFSN-SLSGSIPPILGNLKSLSTLRLHV-NQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSELELCT 110 (147)
Q Consensus 33 ~l~l~~~-~~~~~~~~~~~~l~~L~~l~l~~-n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~ 110 (147)
.++.+++ .++ .+|. +..+++|+.|++++ |.+++..+..|..+.+|++|++++|.+.+..|..+..+++|+.|++++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4577777 777 6777 88888899999986 888866567788888999999999988777777788888999999999
Q ss_pred ceeeecchHhhhhcccCcEEEeecCccccccc
Q 036331 111 IILVGLFLIQLVALHLCLHLRLHRWTVSVLLA 142 (147)
Q Consensus 111 n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~ 142 (147)
|.+.+..+..+..++ |++|++++|.+.+.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 988876666666665 8899999988887654
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.50 E-value=1.8e-15 Score=109.16 Aligned_cols=14 Identities=29% Similarity=0.140 Sum_probs=6.3
Q ss_pred ccCcEEEeecCccc
Q 036331 125 HLCLHLRLHRWTVS 138 (147)
Q Consensus 125 ~~L~~l~l~~n~i~ 138 (147)
++|++|++++|.++
T Consensus 370 ~~L~~L~L~~n~i~ 383 (461)
T 1z7x_W 370 SVLRVLWLADCDVS 383 (461)
T ss_dssp CCCCEEECTTSCCC
T ss_pred CceEEEECCCCCCC
Confidence 34444444444444
No 135
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.50 E-value=3.6e-13 Score=97.51 Aligned_cols=103 Identities=26% Similarity=0.267 Sum_probs=66.9
Q ss_pred CCCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCc
Q 036331 1 MGNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLR 80 (147)
Q Consensus 1 l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~ 80 (147)
++++++|+++++++|.+.+ +|.. ..+|+++++++|.+.+ +| .+..+++|+++++++|.+.+ .|... .+|+
T Consensus 149 ~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~ 218 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLE 218 (454)
T ss_dssp CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCC
T ss_pred cCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---Cccc
Confidence 4567888888888888773 5543 2477888888887773 45 46777777777777777763 33321 3566
Q ss_pred EEEccCCccccCchHHhhcCCcccEEEccCceeee
Q 036331 81 NLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVG 115 (147)
Q Consensus 81 ~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 115 (147)
++++++|.+. .+|. ++.+++|+.+++++|.+.+
T Consensus 219 ~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 219 SIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp EEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS
T ss_pred EEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc
Confidence 6666666664 4453 5566666666666666554
No 136
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.42 E-value=1.2e-12 Score=98.07 Aligned_cols=53 Identities=26% Similarity=0.330 Sum_probs=25.1
Q ss_pred cccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCccc
Q 036331 6 SLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLN 66 (147)
Q Consensus 6 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~ 66 (147)
+|+.|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|+++++++|.++
T Consensus 62 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 62 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp TCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred CCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence 4555555555544 3333 3445555555555554 3333 3344555555554444
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.37 E-value=1.9e-14 Score=101.78 Aligned_cols=139 Identities=18% Similarity=0.074 Sum_probs=94.9
Q ss_pred CcccEEEccCCcccccCCccC-CCCCCccEEeccccccccCCCccc-----CCCCCCCEEEcccCccccc----CCCCCC
Q 036331 5 KSLLQLDLSENQLSGSIPLSF-GNLSSLTMKSPFSNSLSGSIPPIL-----GNLKSLSTLRLHVNQLNGV----IPPSIG 74 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~~~~~-----~~l~~L~~l~l~~n~~~~~----~~~~~~ 74 (147)
++|+.|++++|.+.......+ ..+++|+.|++++|.++......+ ...+.|+.+++++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 577788888887653322222 235678888888887763222222 2457789999999988642 233445
Q ss_pred CCCCCcEEEccCCccccC----chHHhhcCCcccEEEccCceeeec----chHhhhhcccCcEEEeecCcccccccc
Q 036331 75 NLSSLRNLSLFNNGLYSS----IPEEIGYLMSVSELELCTIILVGL----FLIQLVALHLCLHLRLHRWTVSVLLAT 143 (147)
Q Consensus 75 ~l~~L~~l~l~~n~l~~~----~~~~~~~~~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~l~l~~n~i~~~~~~ 143 (147)
..++|+++++++|.+.+. ++..+...++|+.|++++|.+++. ++..+...++|++|++++|.|+...+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~ 257 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQ 257 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHH
Confidence 677899999999988642 244566778899999999988754 334555678899999999998766543
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.37 E-value=3e-12 Score=89.00 Aligned_cols=92 Identities=11% Similarity=0.030 Sum_probs=76.0
Q ss_pred CCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCccc-EEEccCceeeecchHhhhhcccCcEE
Q 036331 52 LKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVS-ELELCTIILVGLFLIQLVALHLCLHL 130 (147)
Q Consensus 52 l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~-~l~l~~n~~~~~~~~~~~~l~~L~~l 130 (147)
+++|+.+++++|.+....+..|..+.+|+.+++.+| +...-+..|.++.+|+ .+++.+ .+....+.+|.++++|+++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678999999998888666678889999999999887 5444445788899999 999988 6666667799999999999
Q ss_pred EeecCcccccccccc
Q 036331 131 RLHRWTVSVLLATAL 145 (147)
Q Consensus 131 ~l~~n~i~~~~~~~~ 145 (147)
+++.|.+..+...||
T Consensus 303 ~l~~n~i~~I~~~aF 317 (329)
T 3sb4_A 303 LATGDKITTLGDELF 317 (329)
T ss_dssp EECSSCCCEECTTTT
T ss_pred EeCCCccCccchhhh
Confidence 999999988877776
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.31 E-value=2e-13 Score=101.24 Aligned_cols=138 Identities=14% Similarity=0.071 Sum_probs=89.1
Q ss_pred CCcccEEEccCCcccccCCccCCC-CCCccEEecc----ccccccC-----CCcccCCCCCCCEEEcccCc--ccccCCC
Q 036331 4 LKSLLQLDLSENQLSGSIPLSFGN-LSSLTMKSPF----SNSLSGS-----IPPILGNLKSLSTLRLHVNQ--LNGVIPP 71 (147)
Q Consensus 4 l~~L~~l~l~~~~~~~~~~~~~~~-~~~L~~l~l~----~~~~~~~-----~~~~~~~l~~L~~l~l~~n~--~~~~~~~ 71 (147)
+++|+.|+++.+.+++..+..+.. +++|+.+++. .+.+++. ++..+..+++|+.++++.|. +++....
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 455666666555555433333333 6667777775 3344421 11224457778888886433 4332222
Q ss_pred CC-CCCCCCcEEEccCCcccc-CchHHhhcCCcccEEEccCceeeec-chHhhhhcccCcEEEeecCcccccc
Q 036331 72 SI-GNLSSLRNLSLFNNGLYS-SIPEEIGYLMSVSELELCTIILVGL-FLIQLVALHLCLHLRLHRWTVSVLL 141 (147)
Q Consensus 72 ~~-~~l~~L~~l~l~~n~l~~-~~~~~~~~~~~L~~l~l~~n~~~~~-~~~~~~~l~~L~~l~l~~n~i~~~~ 141 (147)
.+ ..+++|+++++++|.+++ .++..+..+++|+.|++++|.+++. ++.....+++|++|++++|.++...
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTG 529 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTC
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHH
Confidence 22 236789999999998865 3455567889999999999998754 3445568999999999999998763
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=3.1e-14 Score=100.69 Aligned_cols=139 Identities=21% Similarity=0.073 Sum_probs=102.0
Q ss_pred CcccEEEccCCcccccCCcc----CC-CCCCccEEeccccccccCCCccc-CCCCCCCEEEcccCcccccCCCCC-----
Q 036331 5 KSLLQLDLSENQLSGSIPLS----FG-NLSSLTMKSPFSNSLSGSIPPIL-GNLKSLSTLRLHVNQLNGVIPPSI----- 73 (147)
Q Consensus 5 ~~L~~l~l~~~~~~~~~~~~----~~-~~~~L~~l~l~~~~~~~~~~~~~-~~l~~L~~l~l~~n~~~~~~~~~~----- 73 (147)
+.|+.+++++|.+....... +. ..++|+.+++++|.++......+ ..+++|+.+++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 57899999999987432222 22 33799999999999864222222 235689999999999874332222
Q ss_pred CCCCCCcEEEccCCcccc----CchHHhhcCCcccEEEccCceeeecc----hHhhhhcccCcEEEeecCcccccccc
Q 036331 74 GNLSSLRNLSLFNNGLYS----SIPEEIGYLMSVSELELCTIILVGLF----LIQLVALHLCLHLRLHRWTVSVLLAT 143 (147)
Q Consensus 74 ~~l~~L~~l~l~~n~l~~----~~~~~~~~~~~L~~l~l~~n~~~~~~----~~~~~~l~~L~~l~l~~n~i~~~~~~ 143 (147)
...++|+++++++|.++. .++..+...++|++|++++|.+.+.. +..+...++|++|++++|.|+...+.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 246789999999999864 24445577899999999999988643 45667788999999999999875443
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=6e-11 Score=82.43 Aligned_cols=103 Identities=11% Similarity=-0.107 Sum_probs=89.6
Q ss_pred CCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCc-EEEccCCccccCchHHhhcCCcccEE
Q 036331 28 LSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLR-NLSLFNNGLYSSIPEEIGYLMSVSEL 106 (147)
Q Consensus 28 ~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~-~l~l~~n~l~~~~~~~~~~~~~L~~l 106 (147)
+++|+.+++++|.++..-...|..+.+|+.+++.+| +....+..|..+.+|+ .+.+.+ .+...-+..+.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678999999999888666788999999999999998 7766778899999999 999988 6655555678999999999
Q ss_pred EccCceeeecchHhhhhcccCcEEEe
Q 036331 107 ELCTIILVGLFLIQLVALHLCLHLRL 132 (147)
Q Consensus 107 ~l~~n~~~~~~~~~~~~l~~L~~l~l 132 (147)
++..|.+....+.+|.++++|++++.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EeCCCccCccchhhhcCCcchhhhcc
Confidence 99999999888889999999999864
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.11 E-value=4.1e-11 Score=88.86 Aligned_cols=63 Identities=14% Similarity=0.195 Sum_probs=32.3
Q ss_pred CCCcccEEEccCCccccc----CCccCCCCCCccEEeccccccc----cCCCcccCCCCCCCEEEcccCcc
Q 036331 3 NLKSLLQLDLSENQLSGS----IPLSFGNLSSLTMKSPFSNSLS----GSIPPILGNLKSLSTLRLHVNQL 65 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~l~l~~~~~~----~~~~~~~~~l~~L~~l~l~~n~~ 65 (147)
++++|++|++++|.+.+. ++.....+++|+.|++++|.++ ..++..+..+++|+.+++++|.+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 356777777777765433 1222334555666666555554 12222333455555555555543
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.07 E-value=5e-12 Score=93.75 Aligned_cols=91 Identities=20% Similarity=0.101 Sum_probs=58.4
Q ss_pred cCCCCCCCEEEcccCcccccCCCCCCC-CCCCcEEEccCCccccCchHHh-hcCCcccEEEccCceeeecchH-hhhhcc
Q 036331 49 LGNLKSLSTLRLHVNQLNGVIPPSIGN-LSSLRNLSLFNNGLYSSIPEEI-GYLMSVSELELCTIILVGLFLI-QLVALH 125 (147)
Q Consensus 49 ~~~l~~L~~l~l~~n~~~~~~~~~~~~-l~~L~~l~l~~n~l~~~~~~~~-~~~~~L~~l~l~~n~~~~~~~~-~~~~l~ 125 (147)
+..+++|+.+++++ .++......+.. +++|+++++++|.+++..+..+ ..+++|+.|++++|.+++.... ....++
T Consensus 428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 34456677777755 343322222332 6778888888888765444444 5678888888888887544333 445578
Q ss_pred cCcEEEeecCccccc
Q 036331 126 LCLHLRLHRWTVSVL 140 (147)
Q Consensus 126 ~L~~l~l~~n~i~~~ 140 (147)
+|++|++++|.++..
T Consensus 507 ~L~~L~l~~~~~~~~ 521 (594)
T 2p1m_B 507 TMRSLWMSSCSVSFG 521 (594)
T ss_dssp GSSEEEEESSCCBHH
T ss_pred CCCEEeeeCCCCCHH
Confidence 888888888887543
No 144
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.06 E-value=1.4e-10 Score=81.71 Aligned_cols=138 Identities=15% Similarity=0.097 Sum_probs=81.9
Q ss_pred CCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccC--CCCCCCEEEccc--Cccccc-----CCCCC-
Q 036331 4 LKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILG--NLKSLSTLRLHV--NQLNGV-----IPPSI- 73 (147)
Q Consensus 4 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~--~l~~L~~l~l~~--n~~~~~-----~~~~~- 73 (147)
+++|+.|.++++.-. .++. + ..++|+.|++..+.+.......+. .+++|+.|++.. +...+. +...+
T Consensus 171 ~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp CTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred CCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence 456666666655211 1222 2 256666666666655422112222 577888887743 211111 11112
Q ss_pred -CCCCCCcEEEccCCccccCchHHhh---cCCcccEEEccCceeeecc----hHhhhhcccCcEEEeecCccccccccc
Q 036331 74 -GNLSSLRNLSLFNNGLYSSIPEEIG---YLMSVSELELCTIILVGLF----LIQLVALHLCLHLRLHRWTVSVLLATA 144 (147)
Q Consensus 74 -~~l~~L~~l~l~~n~l~~~~~~~~~---~~~~L~~l~l~~n~~~~~~----~~~~~~l~~L~~l~l~~n~i~~~~~~~ 144 (147)
..+++|++|++.+|.+....+..+. .+++|+.|+++.|.+.+.- +..+..+++|+.|+++.|.|+.....+
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~ 326 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKE 326 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHH
T ss_pred cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHH
Confidence 2468899999988887654444443 4688999999888887643 233456788999999999887665443
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.98 E-value=1.6e-10 Score=85.69 Aligned_cols=132 Identities=12% Similarity=0.078 Sum_probs=71.3
Q ss_pred CCcccEEEccCCcccccCCccCC-CCCCccEEecccc-ccccC-CCcccCCCCCCCEEEcccCcccccCCCC----CCCC
Q 036331 4 LKSLLQLDLSENQLSGSIPLSFG-NLSSLTMKSPFSN-SLSGS-IPPILGNLKSLSTLRLHVNQLNGVIPPS----IGNL 76 (147)
Q Consensus 4 l~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~-~~~~~-~~~~~~~l~~L~~l~l~~n~~~~~~~~~----~~~l 76 (147)
+++|+.|+++++.+.+..+..+. .+++|+.|++.+| .+... .+.....+++|+++++++|.+++..+.. ...+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 45566666666665544333332 4566777777666 33311 2233335667777777777655432222 2245
Q ss_pred CCCcEEEccCCc--ccc-CchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecC
Q 036331 77 SSLRNLSLFNNG--LYS-SIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRW 135 (147)
Q Consensus 77 ~~L~~l~l~~n~--l~~-~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n 135 (147)
++|+++++++|. +.. .++.....+++|+.|++.+|...+.++..+..+++|++++++.+
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 567777777665 211 11222344577777777766322235566666677777765433
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.98 E-value=4.9e-09 Score=74.86 Aligned_cols=141 Identities=13% Similarity=0.040 Sum_probs=70.7
Q ss_pred CCCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccC-----------------
Q 036331 1 MGNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVN----------------- 63 (147)
Q Consensus 1 l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n----------------- 63 (147)
|.+|++|+.+++.+|++. .++.......+|+.+.+..+ +...-...|..+++|+.+.+..+
T Consensus 176 F~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i 253 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTV 253 (401)
T ss_dssp TTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEE
T ss_pred hhCcccCCeeecCCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEE
Confidence 356677777777776655 33433222455555555533 33233445555555555555442
Q ss_pred ----cccccCCCCCCCCCCCcEEEccCCccc-----cCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeec
Q 036331 64 ----QLNGVIPPSIGNLSSLRNLSLFNNGLY-----SSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHR 134 (147)
Q Consensus 64 ----~~~~~~~~~~~~l~~L~~l~l~~n~l~-----~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~ 134 (147)
.+.......|..+.+|+.+.+.++.+. ..-+..+..+++|+.+.+.. .+......+|.++.+|+.+.+..
T Consensus 254 ~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 254 KLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp EEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred EeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence 122222344555555666655554432 12223455556666666653 24444445666666666666644
Q ss_pred Ccccccccccc
Q 036331 135 WTVSVLLATAL 145 (147)
Q Consensus 135 n~i~~~~~~~~ 145 (147)
+ +..+...||
T Consensus 333 ~-l~~I~~~aF 342 (401)
T 4fdw_A 333 N-VTQINFSAF 342 (401)
T ss_dssp T-CCEECTTSS
T ss_pred c-ccEEcHHhC
Confidence 3 444433333
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.93 E-value=1e-08 Score=73.20 Aligned_cols=137 Identities=12% Similarity=0.084 Sum_probs=88.4
Q ss_pred CCCCcccEEEccCCcccccCCc-cCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCccc-----ccCCCCCCC
Q 036331 2 GNLKSLLQLDLSENQLSGSIPL-SFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLN-----GVIPPSIGN 75 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~-----~~~~~~~~~ 75 (147)
.++++|+.+++..+ +. .++. .|.+ .+|+.+.+.+ .+...-...|..+++|+.+.+.++.+. ...+..|..
T Consensus 223 ~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~ 298 (401)
T 4fdw_A 223 LKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG 298 (401)
T ss_dssp TTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT
T ss_pred hCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC
Confidence 45566666666653 22 2232 2333 5666666633 344355677788888888888777654 344567888
Q ss_pred CCCCcEEEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCcccccccccc
Q 036331 76 LSSLRNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLATAL 145 (147)
Q Consensus 76 l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 145 (147)
+.+|+.+.+.+ .+...-...+.++.+|+.+.+..+ +......+|.++ +|+.+++++|.+......+|
T Consensus 299 c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F 365 (401)
T 4fdw_A 299 CPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVW 365 (401)
T ss_dssp CTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSC
T ss_pred CccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccc
Confidence 88888888874 353333446777888888888655 555555678888 88888888887665444433
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.86 E-value=5.8e-10 Score=71.55 Aligned_cols=116 Identities=14% Similarity=0.018 Sum_probs=85.2
Q ss_pred CCCCCCccEEecccc-cccc----CCCcccCCCCCCCEEEcccCccccc----CCCCCCCCCCCcEEEccCCccccC---
Q 036331 25 FGNLSSLTMKSPFSN-SLSG----SIPPILGNLKSLSTLRLHVNQLNGV----IPPSIGNLSSLRNLSLFNNGLYSS--- 92 (147)
Q Consensus 25 ~~~~~~L~~l~l~~~-~~~~----~~~~~~~~l~~L~~l~l~~n~~~~~----~~~~~~~l~~L~~l~l~~n~l~~~--- 92 (147)
+...++|+.|++++| .+.. .+...+...++|+++++++|.+... +...+...++|++|++++|.+...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 456788899999888 7652 2334555678899999999988642 223344557899999999998643
Q ss_pred -chHHhhcCCcccEEEc--cCceeeec----chHhhhhcccCcEEEeecCccccc
Q 036331 93 -IPEEIGYLMSVSELEL--CTIILVGL----FLIQLVALHLCLHLRLHRWTVSVL 140 (147)
Q Consensus 93 -~~~~~~~~~~L~~l~l--~~n~~~~~----~~~~~~~l~~L~~l~l~~n~i~~~ 140 (147)
+...+...++|++|++ .+|.+... +...+...++|++|++++|.|...
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 3455667789999999 88988864 334566678999999999998644
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.76 E-value=3.7e-09 Score=74.51 Aligned_cols=138 Identities=11% Similarity=0.028 Sum_probs=90.4
Q ss_pred CCCcccEEEccCCccc---------ccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCC
Q 036331 3 NLKSLLQLDLSENQLS---------GSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSI 73 (147)
Q Consensus 3 ~l~~L~~l~l~~~~~~---------~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~ 73 (147)
++++|+.|.+.+.... +.+...+..+++|+.|.++++.-. ..+. + .+++|+.|++..+.+.......+
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence 3578899988765321 112233456799999999888422 2333 3 37899999998887753322222
Q ss_pred C--CCCCCcEEEccC--CccccC-----chHHh--hcCCcccEEEccCceeeecchHhhh---hcccCcEEEeecCcccc
Q 036331 74 G--NLSSLRNLSLFN--NGLYSS-----IPEEI--GYLMSVSELELCTIILVGLFLIQLV---ALHLCLHLRLHRWTVSV 139 (147)
Q Consensus 74 ~--~l~~L~~l~l~~--n~l~~~-----~~~~~--~~~~~L~~l~l~~n~~~~~~~~~~~---~l~~L~~l~l~~n~i~~ 139 (147)
. .+++|++|+++. +...+. +...+ ...++|+.|++.+|.+....+..+. .+++|++|+++.|.+.+
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 2 578899998853 221111 11222 2478999999999988765544444 48899999999999987
Q ss_pred cccc
Q 036331 140 LLAT 143 (147)
Q Consensus 140 ~~~~ 143 (147)
..+.
T Consensus 294 ~G~~ 297 (362)
T 2ra8_A 294 EGAR 297 (362)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.74 E-value=1e-09 Score=70.37 Aligned_cols=114 Identities=12% Similarity=0.104 Sum_probs=87.1
Q ss_pred CCCCcccEEEccCC-ccccc----CCccCCCCCCccEEecccccccc----CCCcccCCCCCCCEEEcccCccccc----
Q 036331 2 GNLKSLLQLDLSEN-QLSGS----IPLSFGNLSSLTMKSPFSNSLSG----SIPPILGNLKSLSTLRLHVNQLNGV---- 68 (147)
Q Consensus 2 ~~l~~L~~l~l~~~-~~~~~----~~~~~~~~~~L~~l~l~~~~~~~----~~~~~~~~l~~L~~l~l~~n~~~~~---- 68 (147)
...++|++|++++| .+... +...+...++|+.|++++|.+.. .+...+...+.|+++++++|.+...
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 45788999999999 77632 34456678899999999999863 2234445567899999999999743
Q ss_pred CCCCCCCCCCCcEEEc--cCCccccC----chHHhhcCCcccEEEccCceeee
Q 036331 69 IPPSIGNLSSLRNLSL--FNNGLYSS----IPEEIGYLMSVSELELCTIILVG 115 (147)
Q Consensus 69 ~~~~~~~l~~L~~l~l--~~n~l~~~----~~~~~~~~~~L~~l~l~~n~~~~ 115 (147)
+...+.....|+++++ ++|.+... +...+...++|++|++++|.+..
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 3455667788999999 88998643 34455667999999999998763
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.72 E-value=1.1e-08 Score=69.07 Aligned_cols=79 Identities=25% Similarity=0.230 Sum_probs=53.0
Q ss_pred CCCCCCEEEcccCcccc--cCCCCCCCCCCCcEEEccCCccccCchHHhhcCC--cccEEEccCceeeecch-------H
Q 036331 51 NLKSLSTLRLHVNQLNG--VIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLM--SVSELELCTIILVGLFL-------I 119 (147)
Q Consensus 51 ~l~~L~~l~l~~n~~~~--~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~--~L~~l~l~~n~~~~~~~-------~ 119 (147)
.++.|+.|++++|.+++ .++..+..+++|+.|++++|.+.+. ..+..+. +|++|++.+|++.+.+| .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 46678888888888775 3344455677888888888887543 2233333 78888888888776443 3
Q ss_pred hhhhcccCcEEE
Q 036331 120 QLVALHLCLHLR 131 (147)
Q Consensus 120 ~~~~l~~L~~l~ 131 (147)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 566778888765
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.60 E-value=5.7e-08 Score=61.62 Aligned_cols=84 Identities=13% Similarity=0.077 Sum_probs=47.3
Q ss_pred CCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCc-cccCchHHhhcC----CcccEEEccCce-eeecchHhhhhccc
Q 036331 53 KSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNG-LYSSIPEEIGYL----MSVSELELCTII-LVGLFLIQLVALHL 126 (147)
Q Consensus 53 ~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~-l~~~~~~~~~~~----~~L~~l~l~~n~-~~~~~~~~~~~l~~ 126 (147)
..|+.++++++.++...-..+..+++|++|++++|. +++.--..+..+ ++|++|++++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 346666666666554433445566666777776664 433222333332 356777776664 55433345566677
Q ss_pred CcEEEeecCc
Q 036331 127 CLHLRLHRWT 136 (147)
Q Consensus 127 L~~l~l~~n~ 136 (147)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777664
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.60 E-value=4.5e-08 Score=66.17 Aligned_cols=81 Identities=22% Similarity=0.203 Sum_probs=63.1
Q ss_pred CCCCCccEEecccccccc--CCCcccCCCCCCCEEEcccCccccc-CCCCCCCCCCCcEEEccCCccccCch-------H
Q 036331 26 GNLSSLTMKSPFSNSLSG--SIPPILGNLKSLSTLRLHVNQLNGV-IPPSIGNLSSLRNLSLFNNGLYSSIP-------E 95 (147)
Q Consensus 26 ~~~~~L~~l~l~~~~~~~--~~~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~~l~~L~~l~l~~n~l~~~~~-------~ 95 (147)
.++++|+.|++++|.+++ .++..+..+++|+.|++++|.+.+. .-..+..+ +|++|++.+|.+.+..| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 468899999999999986 3456667899999999999999853 11223333 89999999999977554 3
Q ss_pred HhhcCCcccEEE
Q 036331 96 EIGYLMSVSELE 107 (147)
Q Consensus 96 ~~~~~~~L~~l~ 107 (147)
.+..+|+|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 467889999887
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.37 E-value=1.5e-07 Score=59.63 Aligned_cols=93 Identities=10% Similarity=0.073 Sum_probs=69.0
Q ss_pred cCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCc-ccccCCCCCCCC----CCCcEEEccCCc-cccCc
Q 036331 20 SIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQ-LNGVIPPSIGNL----SSLRNLSLFNNG-LYSSI 93 (147)
Q Consensus 20 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~-~~~~~~~~~~~l----~~L~~l~l~~n~-l~~~~ 93 (147)
.+|.....-..|+.+++++|.++..--..+..+++|+.+++++|. ++...-..+..+ ++|++|++++|. ++..-
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 355544445679999999999875545667789999999999996 654322333332 479999999985 76544
Q ss_pred hHHhhcCCcccEEEccCce
Q 036331 94 PEEIGYLMSVSELELCTII 112 (147)
Q Consensus 94 ~~~~~~~~~L~~l~l~~n~ 112 (147)
-..+..+++|+.|++++++
T Consensus 132 l~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHGGGCTTCCEEEEESCT
T ss_pred HHHHhcCCCCCEEECCCCC
Confidence 4567789999999999986
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.27 E-value=1e-05 Score=57.00 Aligned_cols=118 Identities=15% Similarity=0.118 Sum_probs=76.1
Q ss_pred cCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCcc
Q 036331 24 SFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSV 103 (147)
Q Consensus 24 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L 103 (147)
.+.++.+|+.+.+..+ ++..-...+..+..|+.+.+..+ +.......|..+.+|+.+.+.++.+...-...+.++.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 3556677777777655 33344566667777888777554 443445667778888888887776644334567778888
Q ss_pred cEEEccCceeeecchHhhhhcccCcEEEeecCcccccccccc
Q 036331 104 SELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLATAL 145 (147)
Q Consensus 104 ~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 145 (147)
+.+.+..+ +...-..+|.++.+|+.+.+..+ ++.+...||
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF 352 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAF 352 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHh
Confidence 88888654 44444457888888888877543 444444443
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.21 E-value=1.5e-05 Score=56.53 Aligned_cols=107 Identities=7% Similarity=0.038 Sum_probs=52.3
Q ss_pred CCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCccc
Q 036331 25 FGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVS 104 (147)
Q Consensus 25 ~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~ 104 (147)
|.++.+|+.+.+.++... .-...+..+..|+.+.+.. .+.......|..+.+|+.+.+..+ +...-...+.++.+|+
T Consensus 261 F~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 445555565555544333 3344555555566555542 233233345555556666655433 2222223455555666
Q ss_pred EEEccCceeeecchHhhhhcccCcEEEeecC
Q 036331 105 ELELCTIILVGLFLIQLVALHLCLHLRLHRW 135 (147)
Q Consensus 105 ~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n 135 (147)
.+.+..+ ++..-..+|.++.+|+.+++.++
T Consensus 338 ~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 338 RIAIPSS-VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp EEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred EEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence 6655433 33333345556666666655554
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.19 E-value=2.1e-05 Score=55.75 Aligned_cols=105 Identities=14% Similarity=-0.028 Sum_probs=69.4
Q ss_pred CCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCccc
Q 036331 25 FGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVS 104 (147)
Q Consensus 25 ~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~ 104 (147)
+.+...++.+......+ ....+..+.+|+.+.+..+ +.......|..+.+|+.+.+..+ +...-...+.++.+|+
T Consensus 272 F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~ 346 (394)
T 4fs7_A 272 FYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLS 346 (394)
T ss_dssp TTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCC
T ss_pred cccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCC
Confidence 33444444444433322 2345566778888887654 44455677888888998888654 4333345677888999
Q ss_pred EEEccCceeeecchHhhhhcccCcEEEeecC
Q 036331 105 ELELCTIILVGLFLIQLVALHLCLHLRLHRW 135 (147)
Q Consensus 105 ~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n 135 (147)
.+.+..+ +......+|.++.+|+.+++..+
T Consensus 347 ~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 347 NINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred EEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 9988766 55555568889999999988754
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.01 E-value=0.00017 Score=51.17 Aligned_cols=130 Identities=8% Similarity=0.058 Sum_probs=84.1
Q ss_pred CCCCcccEEEccCCcccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcE
Q 036331 2 GNLKSLLQLDLSENQLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRN 81 (147)
Q Consensus 2 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~ 81 (147)
.++..|+.+.+..+... .-...|.++.+|+.+.+.. .+...-...|..+.+|+.+.+..+ ++......|.++.+|+.
T Consensus 262 ~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLER 338 (394)
T ss_dssp TTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCE
T ss_pred eecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCE
Confidence 45667777777654322 2233567888999999864 344355678888999999999765 55455678889999999
Q ss_pred EEccCCccccCchHHhhcCCcccEEEccCceeeecchHhhhhcccCcEEEeecCccc
Q 036331 82 LSLFNNGLYSSIPEEIGYLMSVSELELCTIILVGLFLIQLVALHLCLHLRLHRWTVS 138 (147)
Q Consensus 82 l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~ 138 (147)
+.+..+ +...-...+.++.+|+.+++.++... ..++..+..|+.+.+..+.+.
T Consensus 339 i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 339 IAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp EEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC-----------
T ss_pred EEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCEE
Confidence 999654 43333457888999999999876432 245667788888888766543
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.82 E-value=0.00043 Score=48.68 Aligned_cols=117 Identities=10% Similarity=0.026 Sum_probs=82.4
Q ss_pred CCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCccc
Q 036331 25 FGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVS 104 (147)
Q Consensus 25 ~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~ 104 (147)
+....+++.+.+..+- .......+..+..|+.+.+..+ +.......+..+.+++.+.+..+ +...-...+..+.+|+
T Consensus 213 f~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccce-eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 3455667777665543 2244566777888998888765 44455667888889999988654 3222234677889999
Q ss_pred EEEccCceeeecchHhhhhcccCcEEEeecCcccccccccc
Q 036331 105 ELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLATAL 145 (147)
Q Consensus 105 ~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 145 (147)
.+.+..+.+......+|.++.+|+.+.+..+ +..+...||
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF 329 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAF 329 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHh
Confidence 9999888877666779999999999999754 555545454
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.69 E-value=0.00063 Score=48.19 Aligned_cols=114 Identities=14% Similarity=0.036 Sum_probs=73.2
Q ss_pred CCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCccc
Q 036331 25 FGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVS 104 (147)
Q Consensus 25 ~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~ 104 (147)
+.++..++.+.+..+... .....+..+..++.+....+.+. ...+..+.+|+.+.+..+ +...-...+..+.+|+
T Consensus 249 f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~ 323 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLV 323 (394)
T ss_dssp TTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred ccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCC
Confidence 444555666666555433 44555566666666665544332 245667788888888654 3233334677889999
Q ss_pred EEEccCceeeecchHhhhhcccCcEEEeecCcccccccccc
Q 036331 105 ELELCTIILVGLFLIQLVALHLCLHLRLHRWTVSVLLATAL 145 (147)
Q Consensus 105 ~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~i~~~~~~~~ 145 (147)
.+++..+ +......+|.++.+|+.+++..+ +..+...||
T Consensus 324 ~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF 362 (394)
T 4fs7_A 324 SIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAF 362 (394)
T ss_dssp EECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTB
T ss_pred EEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHh
Confidence 9998654 55555568999999999999776 655555554
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.50 E-value=9.1e-05 Score=44.55 Aligned_cols=57 Identities=16% Similarity=0.102 Sum_probs=40.4
Q ss_pred EEEcccCccc-ccCCCCCCCCCCCcEEEccCCccccCchHHhhcCCcccEEEccCceeee
Q 036331 57 TLRLHVNQLN-GVIPPSIGNLSSLRNLSLFNNGLYSSIPEEIGYLMSVSELELCTIILVG 115 (147)
Q Consensus 57 ~l~l~~n~~~-~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 115 (147)
.++-+++.++ ..+|..+. .++++|++++|.+....+..+..+++|+.|++.+|++.-
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 5666666665 23454432 368899999999865545567788889999999998774
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.31 E-value=0.00014 Score=46.83 Aligned_cols=114 Identities=15% Similarity=0.069 Sum_probs=76.8
Q ss_pred CCCCCccEEecccc-cccc----CCCcccCCCCCCCEEEcccCcccccCC----CCCCCCCCCcEEEccCCccccCch--
Q 036331 26 GNLSSLTMKSPFSN-SLSG----SIPPILGNLKSLSTLRLHVNQLNGVIP----PSIGNLSSLRNLSLFNNGLYSSIP-- 94 (147)
Q Consensus 26 ~~~~~L~~l~l~~~-~~~~----~~~~~~~~l~~L~~l~l~~n~~~~~~~----~~~~~l~~L~~l~l~~n~l~~~~~-- 94 (147)
.+-+.|+.|+++++ .+.. .+...+..-..|+.+++++|.+....- +.+..-..|++|++++|.+...-.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 35678999999875 5542 223444455789999999999874322 333445679999999999864322
Q ss_pred --HHhhcCCcccEEEccCc---eeee----cchHhhhhcccCcEEEeecCcccc
Q 036331 95 --EEIGYLMSVSELELCTI---ILVG----LFLIQLVALHLCLHLRLHRWTVSV 139 (147)
Q Consensus 95 --~~~~~~~~L~~l~l~~n---~~~~----~~~~~~~~l~~L~~l~l~~n~i~~ 139 (147)
..+..-..|++|++++| .+.. .+.+++..-++|+.|+++.|.+..
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~ 171 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 171 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH
Confidence 34455577999999765 3332 244566777889999998877654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.07 E-value=0.0017 Score=38.87 Aligned_cols=57 Identities=25% Similarity=0.247 Sum_probs=43.3
Q ss_pred cEEeccccccc-cCCCcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEccCCccc
Q 036331 32 TMKSPFSNSLS-GSIPPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLFNNGLY 90 (147)
Q Consensus 32 ~~l~l~~~~~~-~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~~n~l~ 90 (147)
..++.+++.++ ..+|..+ ..+++.|++++|.++..-+..|..+++|+++++++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777775 2455432 246999999999999655567788999999999999875
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.97 E-value=0.00055 Score=44.11 Aligned_cols=88 Identities=13% Similarity=0.112 Sum_probs=64.3
Q ss_pred ccCCCCCCCEEEcccC-ccccc----CCCCCCCCCCCcEEEccCCcccc----CchHHhhcCCcccEEEccCceeeecch
Q 036331 48 ILGNLKSLSTLRLHVN-QLNGV----IPPSIGNLSSLRNLSLFNNGLYS----SIPEEIGYLMSVSELELCTIILVGLFL 118 (147)
Q Consensus 48 ~~~~l~~L~~l~l~~n-~~~~~----~~~~~~~l~~L~~l~l~~n~l~~----~~~~~~~~~~~L~~l~l~~n~~~~~~~ 118 (147)
.+..-+.|+.++++++ .+... +-+.+..-..|+.|++++|.+.. .+...+..-+.|++|++++|.+...-.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3344578999999985 66532 22445556789999999999863 444556677999999999999986433
Q ss_pred ----HhhhhcccCcEEEeecC
Q 036331 119 ----IQLVALHLCLHLRLHRW 135 (147)
Q Consensus 119 ----~~~~~l~~L~~l~l~~n 135 (147)
+++..-..|++|++++|
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 35556678999999865
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=75.99 E-value=7.1 Score=21.82 Aligned_cols=39 Identities=10% Similarity=0.173 Sum_probs=18.4
Q ss_pred CcccCCCCCCCEEEcccCcccccCCCCCCCCCCCcEEEcc
Q 036331 46 PPILGNLKSLSTLRLHVNQLNGVIPPSIGNLSSLRNLSLF 85 (147)
Q Consensus 46 ~~~~~~l~~L~~l~l~~n~~~~~~~~~~~~l~~L~~l~l~ 85 (147)
...|..+.+|+.+.+..+ ++......|..+.+|+.+.+.
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 344445555555555443 222334445555555555553
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=47.17 E-value=35 Score=18.88 Aligned_cols=48 Identities=13% Similarity=0.017 Sum_probs=34.3
Q ss_pred cccccCCccCCCCCCccEEeccccccccCCCcccCCCCCCCEEEcccCc
Q 036331 16 QLSGSIPLSFGNLSSLTMKSPFSNSLSGSIPPILGNLKSLSTLRLHVNQ 64 (147)
Q Consensus 16 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~ 64 (147)
.++..-...|.++.+|+.+.+..+--. .-...|..+.+|+.+.+....
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~v~~-Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPNIGL-LYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTTSSC-CCTTSSTTCTTCCCEEECCSC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCchhe-EcHHHHhccCCccEEEEcCCC
Confidence 344223345788899999998876433 557788899999999887654
Done!