Query 036333
Match_columns 527
No_of_seqs 255 out of 1662
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 11:37:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036333.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036333hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 4.6E-58 1E-62 519.6 45.5 405 70-489 24-450 (832)
2 PRK03562 glutathione-regulated 100.0 1.6E-53 3.4E-58 471.0 48.1 378 91-476 2-379 (621)
3 PRK03659 glutathione-regulated 100.0 2.5E-51 5.5E-56 452.6 48.4 371 95-476 6-376 (601)
4 PRK10669 putative cation:proto 100.0 1.3E-50 2.7E-55 445.4 49.3 376 94-476 6-387 (558)
5 COG0475 KefB Kef-type K+ trans 100.0 6.3E-49 1.4E-53 412.8 46.3 371 94-474 6-381 (397)
6 COG4651 RosB Kef-type K+ trans 100.0 3.9E-45 8.5E-50 352.1 33.6 379 91-476 3-387 (408)
7 KOG1650 Predicted K+/H+-antipo 100.0 3.7E-46 8E-51 417.0 27.8 407 69-490 3-436 (769)
8 PRK05326 potassium/proton anti 100.0 5.2E-42 1.1E-46 377.0 41.9 371 94-474 6-384 (562)
9 TIGR00932 2a37 transporter, mo 100.0 2.8E-37 6.1E-42 310.3 35.1 271 104-383 2-273 (273)
10 PF00999 Na_H_Exchanger: Sodiu 100.0 6E-42 1.3E-46 359.8 -2.4 365 101-475 3-376 (380)
11 TIGR00844 c_cpa1 na(+)/h(+) an 100.0 7.2E-30 1.6E-34 280.1 40.1 341 102-449 22-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 100.0 3.2E-28 6.9E-33 264.9 39.4 362 100-476 4-407 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 100.0 2.1E-26 4.5E-31 244.3 41.3 375 94-476 6-405 (429)
14 COG3263 NhaP-type Na+/H+ and K 100.0 1E-25 2.2E-30 227.7 32.7 363 100-475 13-387 (574)
15 TIGR00840 b_cpa1 sodium/hydrog 99.9 8.4E-24 1.8E-28 230.5 35.5 352 111-476 27-415 (559)
16 PRK14853 nhaA pH-dependent sod 99.8 7.8E-16 1.7E-20 160.3 37.3 297 144-476 62-394 (423)
17 KOG4505 Na+/H+ antiporter [Ino 99.8 5.8E-16 1.3E-20 152.4 26.1 337 102-446 22-383 (467)
18 KOG1965 Sodium/hydrogen exchan 99.7 8.9E-16 1.9E-20 162.5 24.1 370 96-477 37-455 (575)
19 TIGR00773 NhaA Na+/H+ antiport 99.5 1.1E-11 2.3E-16 127.3 29.5 262 144-446 52-344 (373)
20 PRK14856 nhaA pH-dependent sod 99.4 9.2E-11 2E-15 122.2 26.4 295 144-475 68-429 (438)
21 PRK14855 nhaA pH-dependent sod 99.3 1.2E-09 2.6E-14 113.5 27.1 291 144-474 63-411 (423)
22 PRK09560 nhaA pH-dependent sod 99.3 1.9E-09 4.1E-14 110.9 28.3 291 144-475 59-383 (389)
23 PRK09561 nhaA pH-dependent sod 99.3 2.4E-09 5.2E-14 109.9 25.9 291 144-475 59-382 (388)
24 PRK14854 nhaA pH-dependent sod 99.3 4.3E-09 9.2E-14 107.8 27.4 292 144-475 56-377 (383)
25 PF06965 Na_H_antiport_1: Na+/ 99.1 6.4E-10 1.4E-14 114.1 12.1 290 144-469 55-374 (378)
26 COG3004 NhaA Na+/H+ antiporter 99.0 2.5E-07 5.4E-12 91.8 23.2 282 153-475 71-384 (390)
27 KOG1966 Sodium/hydrogen exchan 98.6 7.3E-08 1.6E-12 102.7 7.0 359 99-475 44-447 (670)
28 PF05684 DUF819: Protein of un 98.3 0.0044 9.6E-08 65.2 33.0 304 117-452 24-352 (378)
29 PRK12460 2-keto-3-deoxyglucona 97.8 0.0088 1.9E-07 60.5 23.2 279 121-476 15-303 (312)
30 COG0385 Predicted Na+-dependen 97.7 0.048 1E-06 55.6 27.4 109 144-256 35-146 (319)
31 TIGR00698 conserved hypothetic 97.6 0.12 2.6E-06 53.4 31.1 97 114-214 27-130 (335)
32 PF03601 Cons_hypoth698: Conse 97.5 0.082 1.8E-06 54.0 26.0 98 115-216 23-126 (305)
33 PF03812 KdgT: 2-keto-3-deoxyg 97.2 0.098 2.1E-06 52.9 22.2 283 120-476 14-309 (314)
34 PF03616 Glt_symporter: Sodium 97.2 0.41 8.8E-06 50.4 27.8 93 336-429 246-343 (368)
35 PRK03562 glutathione-regulated 97.1 0.034 7.4E-07 62.5 19.1 130 103-233 225-356 (621)
36 PRK03659 glutathione-regulated 97.0 0.038 8.3E-07 61.9 19.1 112 104-216 223-334 (601)
37 COG2855 Predicted membrane pro 97.0 0.5 1.1E-05 48.4 29.3 100 114-217 33-136 (334)
38 TIGR00210 gltS sodium--glutama 97.0 0.64 1.4E-05 49.4 27.4 94 335-429 243-341 (398)
39 TIGR00932 2a37 transporter, mo 97.0 0.043 9.4E-07 55.0 17.6 125 325-451 4-130 (273)
40 COG0786 GltS Na+/glutamate sym 96.9 0.23 5E-06 51.7 21.8 105 321-425 226-341 (404)
41 PF13593 DUF4137: SBF-like CPA 96.8 0.71 1.5E-05 47.4 27.3 110 145-256 29-142 (313)
42 PF03956 DUF340: Membrane prot 96.5 0.024 5.3E-07 53.8 10.9 124 122-255 2-133 (191)
43 PRK10669 putative cation:proto 96.5 0.14 2.9E-06 57.1 18.3 130 321-452 14-144 (558)
44 PF03601 Cons_hypoth698: Conse 96.5 0.08 1.7E-06 54.1 15.0 155 321-476 6-169 (305)
45 COG0475 KefB Kef-type K+ trans 96.4 0.17 3.8E-06 53.7 17.8 117 98-214 223-340 (397)
46 PLN03159 cation/H(+) antiporte 96.4 0.095 2.1E-06 60.9 17.0 134 101-235 276-414 (832)
47 PF01758 SBF: Sodium Bile acid 96.3 0.25 5.5E-06 46.7 16.3 101 151-256 2-107 (187)
48 PRK05326 potassium/proton anti 96.1 0.19 4.2E-06 55.9 17.1 115 320-434 13-131 (562)
49 TIGR00793 kdgT 2-keto-3-deoxyg 96.0 0.82 1.8E-05 46.1 18.8 132 342-476 176-309 (314)
50 TIGR00832 acr3 arsenical-resis 96.0 2.4 5.2E-05 43.9 27.7 99 151-254 47-150 (328)
51 TIGR00783 ccs citrate carrier 96.0 0.66 1.4E-05 48.0 18.4 117 336-452 203-328 (347)
52 TIGR03082 Gneg_AbrB_dup membra 95.9 0.23 5E-06 45.6 13.5 104 101-207 2-110 (156)
53 TIGR00698 conserved hypothetic 95.9 0.29 6.3E-06 50.7 15.5 153 323-476 12-175 (335)
54 TIGR00841 bass bile acid trans 95.7 2.8 6E-05 42.5 25.7 101 148-254 9-114 (286)
55 PF06826 Asp-Al_Ex: Predicted 95.6 0.094 2E-06 48.9 9.9 122 103-226 6-136 (169)
56 PRK03818 putative transporter; 95.6 0.16 3.4E-06 56.4 13.2 126 97-225 9-141 (552)
57 COG2855 Predicted membrane pro 95.3 0.45 9.8E-06 48.7 14.2 151 323-475 23-177 (334)
58 TIGR03802 Asp_Ala_antiprt aspa 95.3 0.092 2E-06 58.3 10.1 110 115-226 412-530 (562)
59 TIGR03802 Asp_Ala_antiprt aspa 95.1 0.2 4.2E-06 55.8 11.9 107 99-211 15-127 (562)
60 TIGR00844 c_cpa1 na(+)/h(+) an 95.1 0.26 5.7E-06 56.1 12.8 70 366-435 74-145 (810)
61 TIGR00831 a_cpa1 Na+/H+ antipo 95.0 0.5 1.1E-05 52.1 14.6 117 321-437 6-123 (525)
62 PF05145 AmoA: Putative ammoni 94.7 0.66 1.4E-05 47.8 13.8 106 97-206 155-266 (318)
63 COG0798 ACR3 Arsenite efflux p 94.7 6.1 0.00013 40.6 23.7 135 114-256 13-160 (342)
64 PF03390 2HCT: 2-hydroxycarbox 94.2 9.2 0.0002 40.6 27.3 325 96-452 31-395 (414)
65 COG2985 Predicted permease [Ge 94.1 0.48 1E-05 50.5 11.2 106 120-229 36-146 (544)
66 COG3493 CitS Na+/citrate sympo 93.8 9.7 0.00021 39.7 24.8 85 368-453 327-415 (438)
67 PF03616 Glt_symporter: Sodium 93.8 1.4 2.9E-05 46.5 14.2 109 99-207 226-340 (368)
68 PF05145 AmoA: Putative ammoni 93.7 9.5 0.00021 39.3 28.5 149 319-476 158-313 (318)
69 COG0786 GltS Na+/glutamate sym 93.5 2.2 4.9E-05 44.6 14.7 111 365-476 66-183 (404)
70 PRK04972 putative transporter; 93.4 0.58 1.3E-05 52.0 11.1 120 98-225 16-140 (558)
71 PRK05274 2-keto-3-deoxyglucona 93.0 0.44 9.6E-06 49.1 8.8 131 342-476 178-311 (326)
72 PF03956 DUF340: Membrane prot 93.0 0.9 1.9E-05 43.2 10.1 127 341-475 2-137 (191)
73 TIGR01625 YidE_YbjL_dupl AspT/ 92.9 1.5 3.3E-05 40.2 11.2 109 117-227 20-138 (154)
74 COG1346 LrgB Putative effector 92.4 8.6 0.00019 37.4 16.0 109 357-476 62-171 (230)
75 TIGR03082 Gneg_AbrB_dup membra 92.3 8.8 0.00019 35.1 15.6 118 322-445 4-127 (156)
76 PRK04972 putative transporter; 92.0 0.81 1.8E-05 50.9 9.9 126 99-226 386-525 (558)
77 COG3180 AbrB Putative ammonia 92.0 17 0.00037 37.7 32.4 121 320-446 192-318 (352)
78 KOG1650 Predicted K+/H+-antipo 91.8 0.67 1.5E-05 53.4 9.1 203 14-234 162-398 (769)
79 PF05684 DUF819: Protein of un 90.9 5.9 0.00013 41.9 14.4 124 366-495 56-184 (378)
80 PRK12460 2-keto-3-deoxyglucona 90.7 2.9 6.3E-05 42.6 11.4 86 121-209 169-254 (312)
81 TIGR00946 2a69 he Auxin Efflux 90.4 8.8 0.00019 39.4 15.1 112 114-227 178-290 (321)
82 COG2431 Predicted membrane pro 89.5 2 4.3E-05 42.7 8.7 89 120-212 108-201 (297)
83 TIGR00210 gltS sodium--glutama 89.4 6.6 0.00014 41.8 13.3 121 97-218 222-353 (398)
84 COG0025 NhaP NhaP-type Na+/H+ 87.7 5.6 0.00012 42.8 11.7 118 321-438 14-136 (429)
85 PF00999 Na_H_Exchanger: Sodiu 87.7 0.15 3.3E-06 53.5 -0.2 116 97-213 213-332 (380)
86 COG4651 RosB Kef-type K+ trans 86.1 5.1 0.00011 40.5 9.4 118 319-436 12-130 (408)
87 TIGR00808 malonate_madM malona 83.9 20 0.00044 34.2 11.7 107 95-201 14-133 (254)
88 PF03547 Mem_trans: Membrane t 83.9 12 0.00026 39.2 11.8 103 342-445 11-118 (385)
89 TIGR00946 2a69 he Auxin Efflux 83.8 55 0.0012 33.5 26.2 135 337-475 181-319 (321)
90 PRK09903 putative transporter 83.5 25 0.00055 35.9 13.7 133 338-475 173-309 (314)
91 PRK03818 putative transporter; 83.3 16 0.00034 40.8 12.8 101 121-223 403-513 (552)
92 PRK04125 murein hydrolase regu 82.0 24 0.00053 31.8 11.2 30 92-121 6-35 (141)
93 TIGR00783 ccs citrate carrier 80.0 45 0.00098 34.7 13.8 103 110-214 195-307 (347)
94 PRK09903 putative transporter 79.8 59 0.0013 33.2 14.9 109 115-227 170-280 (314)
95 PF03977 OAD_beta: Na+-transpo 78.9 39 0.00085 34.8 12.6 74 368-443 69-142 (360)
96 COG3329 Predicted permease [Ge 78.7 42 0.00092 34.1 12.5 121 337-460 16-140 (372)
97 PRK10711 hypothetical protein; 77.9 33 0.00072 33.6 11.5 104 362-476 65-169 (231)
98 PRK01658 holin-like protein; V 77.9 44 0.00096 29.4 11.3 98 93-194 4-109 (122)
99 COG2985 Predicted permease [Ge 76.9 10 0.00022 40.9 8.1 100 120-223 397-507 (544)
100 COG3180 AbrB Putative ammonia 76.6 51 0.0011 34.4 12.9 105 99-206 190-299 (352)
101 PRK01821 hypothetical protein; 76.1 49 0.0011 29.6 11.2 102 92-194 8-114 (133)
102 PF05982 DUF897: Domain of unk 75.7 31 0.00067 35.5 11.0 91 121-214 183-276 (327)
103 PF03390 2HCT: 2-hydroxycarbox 72.4 91 0.002 33.3 13.9 143 334-476 57-213 (414)
104 TIGR00659 conserved hypothetic 72.4 58 0.0013 31.8 11.6 104 362-476 64-168 (226)
105 COG1380 Putative effector of m 72.3 49 0.0011 29.4 10.1 101 93-194 5-110 (128)
106 PF04172 LrgB: LrgB-like famil 71.1 57 0.0012 31.7 11.2 89 384-476 70-158 (215)
107 TIGR00840 b_cpa1 sodium/hydrog 65.2 1.4E+02 0.0031 33.3 14.4 74 366-439 68-150 (559)
108 TIGR03136 malonate_biotin Na+- 62.9 2E+02 0.0044 30.2 15.3 75 368-443 105-179 (399)
109 PRK04288 antiholin-like protei 62.8 1.6E+02 0.0035 28.9 19.7 106 360-476 68-174 (232)
110 KOG3826 Na+/H+ antiporter [Ino 60.0 8.8 0.00019 37.4 3.2 131 97-227 100-239 (252)
111 TIGR00793 kdgT 2-keto-3-deoxyg 59.4 70 0.0015 32.6 9.5 73 121-198 174-248 (314)
112 COG3263 NhaP-type Na+/H+ and K 58.5 1.4E+02 0.003 32.3 11.7 107 328-434 22-132 (574)
113 TIGR01625 YidE_YbjL_dupl AspT/ 55.7 55 0.0012 30.0 7.6 84 339-422 23-116 (154)
114 TIGR01109 Na_pump_decarbB sodi 55.2 92 0.002 32.1 9.6 73 368-442 63-141 (354)
115 COG0385 Predicted Na+-dependen 53.3 1.6E+02 0.0035 30.3 11.2 106 364-476 37-150 (319)
116 TIGR03136 malonate_biotin Na+- 52.9 3E+02 0.0065 29.0 25.1 115 98-214 24-168 (399)
117 COG0679 Predicted permeases [G 52.1 2.8E+02 0.006 28.3 31.0 136 337-476 167-307 (311)
118 PF03547 Mem_trans: Membrane t 50.9 1.5E+02 0.0032 30.9 11.1 132 338-472 244-384 (385)
119 PF13593 DUF4137: SBF-like CPA 50.5 3E+02 0.0064 28.2 12.9 75 340-416 7-85 (313)
120 PRK15476 oxaloacetate decarbox 48.3 57 0.0012 34.1 6.9 126 367-494 133-265 (433)
121 PRK15477 oxaloacetate decarbox 48.3 57 0.0012 34.1 6.9 126 367-494 133-265 (433)
122 PF11299 DUF3100: Protein of u 48.0 1.6E+02 0.0035 28.9 9.6 131 121-256 24-162 (241)
123 PF03977 OAD_beta: Na+-transpo 48.0 3.4E+02 0.0074 28.2 27.8 115 98-214 4-131 (360)
124 PRK15475 oxaloacetate decarbox 48.0 58 0.0013 34.1 7.0 126 367-494 133-265 (433)
125 COG0679 Predicted permeases [G 45.9 3.4E+02 0.0074 27.6 14.8 108 116-226 166-276 (311)
126 TIGR00841 bass bile acid trans 45.5 2.8E+02 0.006 28.0 11.6 101 371-476 14-120 (286)
127 PRK14854 nhaA pH-dependent sod 45.3 1.6E+02 0.0034 31.2 9.8 22 366-387 60-81 (383)
128 COG3329 Predicted permease [Ge 45.1 3.6E+02 0.0079 27.7 12.0 106 120-229 18-130 (372)
129 PRK12586 putative monovalent c 40.6 1.2E+02 0.0026 27.6 7.0 24 459-482 74-97 (145)
130 TIGR00832 acr3 arsenical-resis 40.2 4.4E+02 0.0094 27.2 15.1 92 377-475 55-155 (328)
131 PRK11281 hypothetical protein; 39.6 7.9E+02 0.017 30.0 21.6 22 362-383 622-644 (1113)
132 PRK14855 nhaA pH-dependent sod 38.9 1.9E+02 0.0042 31.0 9.4 23 366-388 67-89 (423)
133 PRK14853 nhaA pH-dependent sod 38.5 4.5E+02 0.0098 28.3 12.2 22 366-387 66-87 (423)
134 COG5505 Predicted integral mem 38.2 2.7E+02 0.0059 28.6 9.7 170 337-512 32-205 (384)
135 PF01032 FecCD: FecCD transpor 38.1 1.8E+02 0.004 29.7 9.1 105 111-223 36-150 (311)
136 PRK10577 iron-hydroxamate tran 36.8 7E+02 0.015 28.6 18.1 48 112-159 392-448 (668)
137 COG1346 LrgB Putative effector 36.1 4.3E+02 0.0093 25.9 16.0 104 97-202 9-119 (230)
138 PF12794 MscS_TM: Mechanosensi 35.7 5.2E+02 0.011 26.8 19.0 62 424-486 200-262 (340)
139 PF06826 Asp-Al_Ex: Predicted 34.6 1.7E+02 0.0037 27.2 7.4 88 335-422 21-115 (169)
140 PF03812 KdgT: 2-keto-3-deoxyg 33.5 3.3E+02 0.0073 27.9 9.7 71 122-197 175-247 (314)
141 PRK10263 DNA translocase FtsK; 33.1 3.9E+02 0.0085 33.0 11.6 15 336-350 62-76 (1355)
142 COG3493 CitS Na+/citrate sympo 31.1 6.7E+02 0.014 26.6 13.9 103 110-214 281-393 (438)
143 TIGR01109 Na_pump_decarbB sodi 31.0 6.2E+02 0.014 26.3 22.6 105 106-212 9-129 (354)
144 PRK14856 nhaA pH-dependent sod 30.0 3.1E+02 0.0067 29.6 9.3 23 366-388 72-94 (438)
145 PRK04125 murein hydrolase regu 28.3 4.5E+02 0.0097 23.7 11.7 26 371-396 69-96 (141)
146 PRK10440 iron-enterobactin tra 27.4 7.1E+02 0.015 25.8 18.9 50 112-161 54-112 (330)
147 PRK10503 multidrug efflux syst 27.2 7.1E+02 0.015 30.2 12.9 34 460-495 1006-1039(1040)
148 PRK09561 nhaA pH-dependent sod 26.0 3.4E+02 0.0074 28.8 8.6 23 366-388 63-85 (388)
149 PF04172 LrgB: LrgB-like famil 24.2 6.6E+02 0.014 24.3 14.5 70 157-228 61-130 (215)
150 PRK09560 nhaA pH-dependent sod 23.9 3.9E+02 0.0085 28.4 8.6 23 366-388 63-85 (389)
151 COG2431 Predicted membrane pro 23.5 7.8E+02 0.017 24.9 19.4 80 394-476 165-245 (297)
152 PRK12430 putative bifunctional 23.2 1.1E+02 0.0023 32.1 4.2 61 73-133 2-69 (379)
153 COG3748 Predicted membrane pro 21.0 8.6E+02 0.019 25.2 9.9 92 314-405 147-265 (407)
154 PF00873 ACR_tran: AcrB/AcrD/A 20.6 1.5E+03 0.033 27.2 14.9 43 171-214 353-395 (1021)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=4.6e-58 Score=519.65 Aligned_cols=405 Identities=18% Similarity=0.296 Sum_probs=346.9
Q ss_pred ecCCCCeEEecCCCCC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCcCCCc-------
Q 036333 70 IDRKDNVFIISNFKSK-YPVLQLDLRLISDLVVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSE------- 141 (527)
Q Consensus 70 ~~~~~~~~~~~~p~~~-~p~l~~d~~li~~l~lil~~a~~~~~l~~rl~lP~iig~IlaGilLGPs~L~~i~~------- 141 (527)
..+++|.|+++||+++ +|+ +++|++++++++.++++++||+|||.++|||++|+++||+++|.++.
T Consensus 24 ~~~s~g~~~g~~pl~~~l~~------~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp 97 (832)
T PLN03159 24 MITTNGIWQGDNPLDFSLPL------FILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFP 97 (832)
T ss_pred CccCCcccccCCcccchHHH------HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCC
Confidence 4578999999999998 665 56999999999999999999999999999999999999999998742
Q ss_pred ---hHHHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcC------ChHHHHHHHHHH
Q 036333 142 ---MVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMFLCGITALLFGI------KLSEGIFVGTFL 212 (527)
Q Consensus 142 ---~~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~~~~~~~~~l~~~~~~~~~~~lg~------~~~~al~lg~~l 212 (527)
.+.+++++++|++++||.+|+|+|++.+|+++|+++.+++.++++|++++..++++++. ....++++|.++
T Consensus 98 ~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~al 177 (832)
T PLN03159 98 LRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVAL 177 (832)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 24699999999999999999999999999999999999999999999888776654432 124578999999
Q ss_pred hhccHHHHHHHHhhccccCCchhHHHHHHHHHhhHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036333 213 SMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRT 292 (527)
Q Consensus 213 s~TS~~vv~~~L~e~~~~~s~~g~l~l~~s~l~D~~~~~l~al~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~ 292 (527)
|.||+|+++++|+|+|+++++.||+++++++++|+++|++++++..+...... . ....+.++..+++++++.++.|+
T Consensus 178 S~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~--~-~~~l~~~l~~~~f~~~~~~v~r~ 254 (832)
T PLN03159 178 SVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDST--S-LASLWVLLSSVAFVLFCFYVVRP 254 (832)
T ss_pred HHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--c-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998877665432211 1 11223444445666666777777
Q ss_pred hHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcCCcchhhHHHhHHhH-HHHHH
Q 036333 293 CVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEPI-RNMFA 371 (527)
Q Consensus 293 ~~~~l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~lg~s~~lgafvaGl~l~~~~~~~~l~~~l~~~-~~~f~ 371 (527)
+++|+.|+ .+++ ++.+|.++.+++++++++++++|.+|+|+++|||++|+++|+.+.++++.++++++ .++|+
T Consensus 255 ~~~~~~r~----~~~~--~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~~l~ekle~~~~~lfl 328 (832)
T PLN03159 255 GIWWIIRR----TPEG--ETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGVTLIEKLEDFVSGLLL 328 (832)
T ss_pred HHHHHHHh----CcCC--CCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHH
Confidence 77776544 3322 35678888888888899999999999999999999999999988889999999998 58999
Q ss_pred HHHHHHhccccchhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCC
Q 036333 372 ALFLASIGMLIHVHFLWNH--IDILLASVILVITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHL 449 (527)
Q Consensus 372 plFF~~iGl~i~~~~l~~~--~~~~l~l~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~~~lvl~~~a~~~g~ 449 (527)
|+||+++|+++|+..+.+. |..+++++++.+++|+++++++++++|+|++|++.+|++|++||+++++++..+.+.|+
T Consensus 329 PlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gv 408 (832)
T PLN03159 329 PLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEV 408 (832)
T ss_pred HHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCc
Confidence 9999999999999887643 33445556677899999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHH-HHhhhhhHHHHhhh-hhhhhhhhhhhhc
Q 036333 450 VEGKLYLLLLGTT-ALSLVTTPLLFKLI-PGVVHLGVLLRWF 489 (527)
Q Consensus 450 i~~~~~~~lv~~~-~ls~l~~p~l~~~~-p~~~~~~~~~r~~ 489 (527)
++++.|+++++++ ++|.+++|++.++| |+++|..|++|..
T Consensus 409 i~~~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i 450 (832)
T PLN03159 409 LDDESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTI 450 (832)
T ss_pred cCchhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhcccccccc
Confidence 9999999998765 57999999999999 8888888776654
No 2
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=1.6e-53 Score=470.96 Aligned_cols=378 Identities=25% Similarity=0.415 Sum_probs=337.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCcCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHH
Q 036333 91 LDLRLISDLVVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLR 170 (527)
Q Consensus 91 ~d~~li~~l~lil~~a~~~~~l~~rl~lP~iig~IlaGilLGPs~L~~i~~~~~~~~l~~lgl~~llF~~Gle~d~~~lr 170 (527)
+|+.++.++.+++.++.++..++||+|+|+++||+++|+++||+++|++++.+.++.++++|++++||.+|+|+|++.+|
T Consensus 2 ~~~~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~ 81 (621)
T PRK03562 2 MDSHTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLW 81 (621)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHH
Confidence 35678899999999999999999999999999999999999999999998888899999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHHHhhHHHH
Q 036333 171 VVRAVAVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVG 250 (527)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~al~lg~~ls~TS~~vv~~~L~e~~~~~s~~g~l~l~~s~l~D~~~~ 250 (527)
+.+|.++..+..++++++++++.+++++|.++..++++|.+++.||++++.++++|++..+++.||.+++.+++||+.++
T Consensus 82 ~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll~~Dl~~i 161 (621)
T PRK03562 82 KLRRSIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILLFQDIAAI 161 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHH
Q 036333 251 LLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAW 330 (527)
Q Consensus 251 ~l~al~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~ 330 (527)
+++++++.++..... .+....+......++++++.++.+|++.+++++|+.|. +.+|.+...++.+++++++
T Consensus 162 ~ll~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~-------~~~e~~~~~~l~lv~~~a~ 233 (621)
T PRK03562 162 PLVAMIPLLAASGAS-TTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARS-------GLREVFTAVALFLVFGFGL 233 (621)
T ss_pred HHHHHHHHHccCCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCchHHHHHHHHHHHHHHH
Confidence 998888766542111 01111222222233334445566788888988888765 5688888888899999999
Q ss_pred HHHHhChhHHHHHHHHHHHhcCCcchhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036333 331 CSDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVF 410 (527)
Q Consensus 331 ~ae~lg~s~~lgafvaGl~l~~~~~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~ 410 (527)
++|.+|+|+++|||++|+++++.++++++++++++++++|+|+||+++|+++|+..+..+++.++.+++..+++|+++++
T Consensus 234 la~~~Gls~~lGAFlAGl~l~~~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~ 313 (621)
T PRK03562 234 LMEEVGLSMALGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLW 313 (621)
T ss_pred HHHHhCccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988877766666666678899999999
Q ss_pred HHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHhhhhhHHHHhhh
Q 036333 411 TVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKLI 476 (527)
Q Consensus 411 l~~~~~~~~~~~~~~lgl~l~~rG~~~lvl~~~a~~~g~i~~~~~~~lv~~~~ls~l~~p~l~~~~ 476 (527)
+.++++|+++++++.+|+.|+|+||+++++++.+.+.|+++++.|+.++.++++|++++|++.+++
T Consensus 314 ~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~~~~ 379 (621)
T PRK03562 314 LLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLLVLL 379 (621)
T ss_pred HHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999887
No 3
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=2.5e-51 Score=452.60 Aligned_cols=371 Identities=30% Similarity=0.479 Sum_probs=330.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCcCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHHHhhh
Q 036333 95 LISDLVVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRA 174 (527)
Q Consensus 95 li~~l~lil~~a~~~~~l~~rl~lP~iig~IlaGilLGPs~L~~i~~~~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~ 174 (527)
++.++.+++.++.+..++++|+|+|+++||+++|+++||+++|++++.+.++.++++|++++||.+|+|+|++++|+.+|
T Consensus 6 ~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~~ 85 (601)
T PRK03659 6 LLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLRR 85 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999988888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHHHhhHHHHHHHH
Q 036333 175 VAVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFA 254 (527)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~al~lg~~ls~TS~~vv~~~L~e~~~~~s~~g~l~l~~s~l~D~~~~~l~a 254 (527)
+++.++..++++|+++++.+.+++|+++..++++|.+++.||++++.++++|+|..+++.||++++.+++||+.++++++
T Consensus 86 ~~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~Di~~i~ll~ 165 (601)
T PRK03659 86 SIFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAVIPALA 165 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998877777777899999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHH
Q 036333 255 LLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDK 334 (527)
Q Consensus 255 l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~ 334 (527)
+.+.+++.......+. ...... +.++...+.+|++.+++++++.+. +.+|.++..++.++++++++++.
T Consensus 166 l~~~l~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~e~~~~~~l~~vl~~a~l~~~ 234 (601)
T PRK03659 166 LVPLLAGSADEHFDWM---KIGMKV-LAFAGMLIGGRYLLRPLFRFIAAS-------GVREVFTAAALLLVLGSALFMDA 234 (601)
T ss_pred HHHHHhcCCCcchHHH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHc-------CCchHHHHHHHHHHHHHHHHHHH
Confidence 8776654322100111 111112 222334556778888888887664 56888888888899999999999
Q ss_pred hChhHHHHHHHHHHHhcCCcchhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036333 335 LGLSLELGSFAAGVMISTTDLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVK 414 (527)
Q Consensus 335 lg~s~~lgafvaGl~l~~~~~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~ 414 (527)
+|+|+++|||++|+++++++.++++++++++++++|+|+||+++|+++|+..+.+.|+..+.+++..+++|++++++.++
T Consensus 235 ~Gls~~LGAFlaGl~l~~s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~~~~~ 314 (601)
T PRK03659 235 LGLSMALGTFIAGVLLAESEYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLYLLAR 314 (601)
T ss_pred hCccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988877776666677788999999999999
Q ss_pred hcCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHhhhhhHHHHhhh
Q 036333 415 GFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKLI 476 (527)
Q Consensus 415 ~~~~~~~~~~~lgl~l~~rG~~~lvl~~~a~~~g~i~~~~~~~lv~~~~ls~l~~p~l~~~~ 476 (527)
++|+++++++.+|++|+|+||+++++++.+.+.|+++++.|+.++.++++|++++|++.+.+
T Consensus 315 ~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~tP~l~~~~ 376 (601)
T PRK03659 315 LYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMTTPLLMKLI 376 (601)
T ss_pred HhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999987
No 4
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=1.3e-50 Score=445.36 Aligned_cols=376 Identities=32% Similarity=0.532 Sum_probs=326.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCcCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHHHhh
Q 036333 94 RLISDLVVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVR 173 (527)
Q Consensus 94 ~li~~l~lil~~a~~~~~l~~rl~lP~iig~IlaGilLGPs~L~~i~~~~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~ 173 (527)
.++..+.++++.+.+++.++||+|+|+++|||++|+++||+++|.+++.+.++.++++|+++++|.+|+|+|++.+|+.+
T Consensus 6 ~~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~ 85 (558)
T PRK10669 6 PLITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVK 85 (558)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHh
Confidence 45677889999999999999999999999999999999999999988888899999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHHHhhHHHHHHH
Q 036333 174 AVAVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLF 253 (527)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~al~lg~~ls~TS~~vv~~~L~e~~~~~s~~g~l~l~~s~l~D~~~~~l~ 253 (527)
+.....++.+++++++++.++.+.+|+++..++++|+++|.||++++.+.++|+|..+++.||++++++++||+.+++++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~Dl~~i~~l 165 (558)
T PRK10669 86 SIAIPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMVLTL 165 (558)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887777788889999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHhcC--CCcchh---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHH
Q 036333 254 ALLPVLGGT--SGVLQG---MISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLV 328 (527)
Q Consensus 254 al~~~l~~~--~~~~~~---~~~~~~~~l~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~ 328 (527)
+++..+... ++..+. ...+.+.+...++++++..++.|++.+|+.++..+. +.+|.+.+.++.+++++
T Consensus 166 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~e~~~l~~l~~~l~~ 238 (558)
T PRK10669 166 VLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAAT-------GSRELFTLSVLALALGI 238 (558)
T ss_pred HHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCchHHHHHHHHHHHHH
Confidence 776654421 111000 112233334444566666778888888887765543 46788877778888877
Q ss_pred HH-HHHHhChhHHHHHHHHHHHhcCCcchhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHH
Q 036333 329 AW-CSDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTI 407 (527)
Q Consensus 329 ~~-~ae~lg~s~~lgafvaGl~l~~~~~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~ 407 (527)
++ .++.+|+|+++|||++|+++++.+.++++.+...+++++|.|+||+++|+++|+..+.+.+...+.+++..+++|++
T Consensus 239 a~~~~~~lGls~~lGAflaGl~l~~~~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~ 318 (558)
T PRK10669 239 AFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSL 318 (558)
T ss_pred HHHHHHHcCccHHHHHHHHHHHHhCChhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 46999999999999999999998888888888888999999999999999999998876665555566677899999
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHhhhhhHHHHhhh
Q 036333 408 IVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKLI 476 (527)
Q Consensus 408 ~~~l~~~~~~~~~~~~~~lgl~l~~rG~~~lvl~~~a~~~g~i~~~~~~~lv~~~~ls~l~~p~l~~~~ 476 (527)
++++.++++|+++|+++.+|++|+|||++++++++.+.+.|+++++.|..++.++++|++++|++.++.
T Consensus 319 ~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~ 387 (558)
T PRK10669 319 AAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLL 387 (558)
T ss_pred HHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999998875
No 5
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.3e-49 Score=412.81 Aligned_cols=371 Identities=31% Similarity=0.518 Sum_probs=321.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCcCC-CchHHHHHHHHHHHHHHHHHHhhcCCchHHHHh
Q 036333 94 RLISDLVVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFV-SEMVQVETVAQFGVIFLLFALGLEFSTTKLRVV 172 (527)
Q Consensus 94 ~li~~l~lil~~a~~~~~l~~rl~lP~iig~IlaGilLGPs~L~~i-~~~~~~~~l~~lgl~~llF~~Gle~d~~~lr~~ 172 (527)
..+.++.+++..+.+.+.++||+|+|+++||+++|+++||.+++.+ ++.+.++.++|+|++++||.+|+|+|++++|++
T Consensus 6 ~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~ 85 (397)
T COG0475 6 LILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERLKKV 85 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHh
Confidence 4668999999999999999999999999999999999999666544 466789999999999999999999999999999
Q ss_pred hhH-HHHHHHHHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHHHhhHHHH
Q 036333 173 RAV-AVLGGLLQIFLFMFLCGITAL-LFGIKLSEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVG 250 (527)
Q Consensus 173 ~~~-~~~~~~~~~~l~~~~~~~~~~-~lg~~~~~al~lg~~ls~TS~~vv~~~L~e~~~~~s~~g~l~l~~s~l~D~~~~ 250 (527)
+|+ +...+..++..|+.++....+ .+|.++..++++|.+++.||+++++++++|+|..+++.|+..++++++||+.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di~~i 165 (397)
T COG0475 86 GRSVGLGVAQVGLTAPFLLGLLLLLGILGLSLIAALFLGAALALSSTAIVLKILMELGLLKTREGQLILGALVFDDIAAI 165 (397)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 999 777777777777666644433 589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHH
Q 036333 251 LLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAW 330 (527)
Q Consensus 251 ~l~al~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~ 330 (527)
+++++.+.+..+.+. ....+...+....++.++....+|++.++++|+..+. +.+|.....++.+++.+++
T Consensus 166 ~lLai~~~l~~~g~~--~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~-------~~~e~~~~~~l~i~l~~a~ 236 (397)
T COG0475 166 LLLAIVPALAGGGSG--SVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT-------ESSELFILFVLLLVLGAAY 236 (397)
T ss_pred HHHHHHHHHccCCCc--cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------cchHHHHHHHHHHHHHHHH
Confidence 999998887654332 1111334455555666666666789999999998875 5688888899999999999
Q ss_pred HHHHhChhHHHHHHHHHHHhcCCcch-hhHHHhHHhHHH-HHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHH
Q 036333 331 CSDKLGLSLELGSFAAGVMISTTDLA-QHTLEQIEPIRN-MFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTII 408 (527)
Q Consensus 331 ~ae~lg~s~~lgafvaGl~l~~~~~~-~~l~~~l~~~~~-~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~ 408 (527)
++|.+|+|+++|||++|+++++.+.+ ++++++++++++ +|.|+||+++|+.+|++.+.+++...+.++.+.+++|.++
T Consensus 237 l~e~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~ 316 (397)
T COG0475 237 LAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVALAILGKILG 316 (397)
T ss_pred HHHHhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888 799999999997 9999999999999999999988877788888889999999
Q ss_pred HHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHhhhhhHHHHh
Q 036333 409 VFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFK 474 (527)
Q Consensus 409 ~~l~~~~~~~~~~~~~~lgl~l~~rG~~~lvl~~~a~~~g~i~~~~~~~lv~~~~ls~l~~p~l~~ 474 (527)
+++.++..|.+.|++...|+.+.++||++++.++.+.+ +.++++.+...+..+++++.+.|.+.+
T Consensus 317 ~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~ 381 (397)
T COG0475 317 AYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTP 381 (397)
T ss_pred HHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998877 577777777776666555555554443
No 6
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.9e-45 Score=352.08 Aligned_cols=379 Identities=34% Similarity=0.546 Sum_probs=339.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCcCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHH
Q 036333 91 LDLRLISDLVVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLR 170 (527)
Q Consensus 91 ~d~~li~~l~lil~~a~~~~~l~~rl~lP~iig~IlaGilLGPs~L~~i~~~~~~~~l~~lgl~~llF~~Gle~d~~~lr 170 (527)
+|..++..+..-+..+++++.++.|+|+|+.+||+++|++.||...|++.+...-..++|+|++++||.+|++++.+++.
T Consensus 3 h~tpli~tiv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLL 82 (408)
T COG4651 3 HDTPLITTIVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLL 82 (408)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHh
Confidence 45556677888889999999999999999999999999999999999998887778999999999999999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHHHhhHHHH
Q 036333 171 VVRAVAVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVG 250 (527)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~al~lg~~ls~TS~~vv~~~L~e~~~~~s~~g~l~l~~s~l~D~~~~ 250 (527)
.+...++..++.++.+....+..+.+.+|+++...+.+|.++|.+|+.|..|.++|++..+++.||+++|-.+++|+...
T Consensus 83 avk~iAipgAl~qia~at~lg~gL~~~lgws~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~mV 162 (408)
T COG4651 83 AVKAIAIPGALAQIALATLLGMGLSSLLGWSFGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMV 162 (408)
T ss_pred hHHHHhcchHHHHHHHHHHHHhHHHHHcCCCcccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHHHH
Confidence 98888888999998888888888889999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhcCCC----cchh-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhccccccchhHHHHHHHHHH
Q 036333 251 LLFALLPVLGGTSG----VLQG-MISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFC 325 (527)
Q Consensus 251 ~l~al~~~l~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~l~~~ 325 (527)
+.+.+.+++++.-+ ...+ ...+...+..++.|+.+..+++|.+.||+++++... .++|++.+.+++++
T Consensus 163 l~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~t-------GsrElf~L~vla~A 235 (408)
T COG4651 163 LALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAAT-------GSRELFTLAVLAIA 235 (408)
T ss_pred HHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CcHHHHHHHHHHHH
Confidence 87777777654211 1111 234455566778888999999999999999988875 77999999999988
Q ss_pred HHHH-HHHHHhChhHHHHHHHHHHHhcCCcchhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHH
Q 036333 326 LLVA-WCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITI 404 (527)
Q Consensus 326 l~~~-~~ae~lg~s~~lgafvaGl~l~~~~~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~ 404 (527)
++.+ ..++.+|.|..+|||.+|+++++++.+++..|..-|+++.|..+||+++||..|+..+.++...++....+.+.+
T Consensus 236 LgVa~Ga~~LfgvsfaLGAffaGMvL~eselshraa~~slpLrdaFaVlFFvsVGmlf~P~~l~~~pl~vlatllii~~g 315 (408)
T COG4651 236 LGVAFGAAELFGVSFALGAFFAGMVLAESELSHRAAEDSLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLLIILFG 315 (408)
T ss_pred HHHhhccceeeccchhHHHHHHHHHhcchhhhHHHHHhccCHHHHHHHHHHHHhhhhcCcHHhhcchHHHHHHHHHHHhh
Confidence 8765 456788999999999999999999999999999999999999999999999999998887777777777788899
Q ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHhhhhhHHHHhhh
Q 036333 405 KTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKLI 476 (527)
Q Consensus 405 K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~~~lvl~~~a~~~g~i~~~~~~~lv~~~~ls~l~~p~l~~~~ 476 (527)
|-+..+...+.+|.|.|+++.++.+++|.|||+++++..+.+.+++++.--..++...++|.+..|+.+...
T Consensus 316 Ks~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~LvlagailsIl~nPllf~~~ 387 (408)
T COG4651 316 KSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAILSILLNPLLFALL 387 (408)
T ss_pred hHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888888888899999999998876
No 7
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-46 Score=417.00 Aligned_cols=407 Identities=20% Similarity=0.312 Sum_probs=349.9
Q ss_pred eecCCCCeEEecCCCCC-CcchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCcCCC-------
Q 036333 69 LIDRKDNVFIISNFKSK-YPVLQLDLRLISDLVVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVS------- 140 (527)
Q Consensus 69 l~~~~~~~~~~~~p~~~-~p~l~~d~~li~~l~lil~~a~~~~~l~~rl~lP~iig~IlaGilLGPs~L~~i~------- 140 (527)
....++|.|.++||.++ +|++ ++|++++++++.+++.++||+|||++++++++|+++||+.+|.++
T Consensus 3 ~~~~~~g~~~~~~~~~~~lpl~------~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f 76 (769)
T KOG1650|consen 3 VKATSNGVFPGVNPLKYALPLL------LLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIF 76 (769)
T ss_pred CccccCCcccCCCccccccHHH------HHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhccc
Confidence 34477999999999999 7874 599999999999999999999999999999999999999998763
Q ss_pred ---chHHHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhc--C---------ChHHHH
Q 036333 141 ---EMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMFLCGITALLFG--I---------KLSEGI 206 (527)
Q Consensus 141 ---~~~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~~~~~~~~~l~~~~~~~~~~~lg--~---------~~~~al 206 (527)
....+++++.+|..+++|..|+|+|.+.+|+.+|++..+++.++++|+..+..+...+. . ...+-.
T Consensus 77 ~~~s~~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (769)
T KOG1650|consen 77 PKSSMIVLELLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEIL 156 (769)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHH
Confidence 34579999999999999999999999999999999999999999999887776554331 0 112567
Q ss_pred HHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHHHhhHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHH
Q 036333 207 FVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGIL 286 (527)
Q Consensus 207 ~lg~~ls~TS~~vv~~~L~e~~~~~s~~g~l~l~~s~l~D~~~~~l~al~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 286 (527)
++..+.|.||+|+++++|.|+|+++++.||+++++++++|+++|.++++.......... .+. ...+.+...+++++++
T Consensus 157 ~~~~~~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~l~~ 234 (769)
T KOG1650|consen 157 FILSAQSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKL-SPL-RSVWDLVLVIGFVLFL 234 (769)
T ss_pred HHHHHhhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCC-cch-HHHHHHHHHHHHHHhe
Confidence 88899999999999999999999999999999999999999999887776665543321 011 2234455556677777
Q ss_pred HHHHHhhHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHhC-hhHHHHHHHHHHHhcCC-cchhhHHHhHH
Q 036333 287 SILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLG-LSLELGSFAAGVMISTT-DLAQHTLEQIE 364 (527)
Q Consensus 287 ~~v~r~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~lg-~s~~lgafvaGl~l~~~-~~~~~l~~~l~ 364 (527)
.++.|+.+.|+ .|++||+ ++.++.|....+..++.++.+++.++ .|+.+|+|+.|+++|++ |.+..+.+|+|
T Consensus 235 ~~v~~p~~~wi----~kr~pe~--~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle 308 (769)
T KOG1650|consen 235 FFVVRPLMKWI----IKRTPEG--KPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLE 308 (769)
T ss_pred eeehhhhHHHH----hhcCCCC--CccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHH
Confidence 77777777776 5567764 46778888888899999999999998 89999999999999987 78999999999
Q ss_pred hH-HHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHH
Q 036333 365 PI-RNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSR 443 (527)
Q Consensus 365 ~~-~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~~~lvl~~~ 443 (527)
.+ .++|+|+||+..|++.|+..+.. |......+....++|++++..++.++++|+||++.+|.+|++||.++++....
T Consensus 309 ~~~~~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~ 387 (769)
T KOG1650|consen 309 DLVSGLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNT 387 (769)
T ss_pred HHHHHHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHH
Confidence 98 58999999999999999998877 55566667777899999999999999999999999999999999999999999
Q ss_pred HhhCCCCcHHHHHHHHHHHHH-hhhhhHHHHhhh-hhhhhhhhhhhhcC
Q 036333 444 SSNLHLVEGKLYLLLLGTTAL-SLVTTPLLFKLI-PGVVHLGVLLRWFS 490 (527)
Q Consensus 444 a~~~g~i~~~~~~~lv~~~~l-s~l~~p~l~~~~-p~~~~~~~~~r~~~ 490 (527)
+.+.+.++++.|.++++++++ |.+++|++..+| |.++|.+|++|...
T Consensus 388 ~~~~~~~~~~~f~~~vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i~ 436 (769)
T KOG1650|consen 388 GLDRKILSDEGFTVMVLMALVSTFITPPLLMFLYDPTRKYHGYKKRGIQ 436 (769)
T ss_pred HhhcCCcccchHHHHHHHHHHHHhhHHHHHHHhcchhhhcCceEeehhh
Confidence 999999999999999987666 778999999999 89888888887644
No 8
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=5.2e-42 Score=377.04 Aligned_cols=371 Identities=16% Similarity=0.180 Sum_probs=297.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCcCCC--chHHHHHHHHHHHHHHHHHHhhcCCchHHHH
Q 036333 94 RLISDLVVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVS--EMVQVETVAQFGVIFLLFALGLEFSTTKLRV 171 (527)
Q Consensus 94 ~li~~l~lil~~a~~~~~l~~rl~lP~iig~IlaGilLGPs~L~~i~--~~~~~~~l~~lgl~~llF~~Gle~d~~~lr~ 171 (527)
.++++++++++++.+++.+++|+|+|.+++|+++|+++||+++|.++ +.+..+.++++|+++++|..|+|+|++.+|+
T Consensus 6 ~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~ 85 (562)
T PRK05326 6 SLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRP 85 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHH
Confidence 46788999999999999999999999999999999999999999663 4457899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH-HHHhcCChHHHHHHHHHHhhccHHHHHHHHhhccc-cCCchhHHHHHHHHHhhHHH
Q 036333 172 VRAVAVLGGLLQIFLFMFLCGIT-ALLFGIKLSEGIFVGTFLSMSSTAVVLKFLMEKNS-TNALHGQVTIGTLILQDCAV 249 (527)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~-~~~lg~~~~~al~lg~~ls~TS~~vv~~~L~e~~~-~~s~~g~l~l~~s~l~D~~~ 249 (527)
+++.++.+++.++++|+++++.. .+++|++|..++++|+++++||++++.++++|.|+ ++++.++++.+++.+||..+
T Consensus 86 ~~~~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS~~nD~~a 165 (562)
T PRK05326 86 ALGPALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESGSNDPMA 165 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhhhcccHHH
Confidence 99999999999999998886654 46789999999999999999999999999999985 78999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHH
Q 036333 250 GLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVA 329 (527)
Q Consensus 250 ~~l~al~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~ 329 (527)
++++.++..+........++..+.. +....++.++..++.+++..|+.++..+ ..++.+.+++++++++++
T Consensus 166 i~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~G~~~g~l~~~l~~~~~~--------~~~~~~~i~~l~~~l~~~ 236 (562)
T PRK05326 166 VFLTITLIELITGGETGLSWGFLLL-FLQQFGLGALIGLLGGWLLVQLLNRIAL--------PAEGLYPILVLAGALLIF 236 (562)
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccC--------chhhHHHHHHHHHHHHHH
Confidence 8877655443322211011211112 2222233333444555566666554321 235567778889999999
Q ss_pred HHHHHhChhHHHHHHHHHHHhcCCc--chhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHHHHHHH-HHHHHHHHHHH
Q 036333 330 WCSDKLGLSLELGSFAAGVMISTTD--LAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILL-ASVILVITIKT 406 (527)
Q Consensus 330 ~~ae~lg~s~~lgafvaGl~l~~~~--~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~~~~l-~l~~~~~~~K~ 406 (527)
+++|.+|.|+++|+|++|+++++.+ ..+++.+..+.+.+++.|+||+++|+.+|++.+.+.++..+ +.++..+++|+
T Consensus 237 ~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~ 316 (562)
T PRK05326 237 ALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFLILVARP 316 (562)
T ss_pred HHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999874 33455556666788999999999999999988875544333 33456678999
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCCcH-HHHHHHHHHHHHhhhhhHHHHh
Q 036333 407 IIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEG-KLYLLLLGTTALSLVTTPLLFK 474 (527)
Q Consensus 407 ~~~~l~~~~~~~~~~~~~~lgl~l~~rG~~~lvl~~~a~~~g~i~~-~~~~~lv~~~~ls~l~~p~l~~ 474 (527)
++++++.+.+++++||++.+|| .++||+++++++..+...|+.+. ..|.++..++++|+++.+...+
T Consensus 317 l~v~l~~~~~~~~~~e~~~i~~-~g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~ 384 (562)
T PRK05326 317 LAVFLSLLPFRFNLREKLFISW-VGLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLP 384 (562)
T ss_pred HHHHHHHccCCCCHhhhheeee-ecchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHH
Confidence 9999999999999999999999 48999999999999999998864 5566666666777666554443
No 9
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=2.8e-37 Score=310.33 Aligned_cols=271 Identities=34% Similarity=0.558 Sum_probs=230.6
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCcCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHHHHHHHH
Q 036333 104 VFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQ 183 (527)
Q Consensus 104 ~~a~~~~~l~~rl~lP~iig~IlaGilLGPs~L~~i~~~~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~~~~~~~ 183 (527)
+++.+.+.++||+|+|++++|+++|+++||+++|.+++.+.++.++++|+.+++|.+|+|+|++.+||++|++..++..+
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~ 81 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQ 81 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred HHHH-HHHHHHHHHHhcCChHHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHHHhhHHHHHHHHHHHHHhcC
Q 036333 184 IFLF-MFLCGITALLFGIKLSEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALLPVLGGT 262 (527)
Q Consensus 184 ~~l~-~~~~~~~~~~lg~~~~~al~lg~~ls~TS~~vv~~~L~e~~~~~s~~g~l~l~~s~l~D~~~~~l~al~~~l~~~ 262 (527)
+++| +.++..+.+++|.++..++++|+++++||++++.++++|+|..+++.|+++++++++||+.+++++++.......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~~~~~~~~~ 161 (273)
T TIGR00932 82 VLVPGVLLGLLLGHLLGLALGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLALLPLLATS 161 (273)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999 444444677889999999999999999999999999999999999999999999999999999988777655432
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHhChhHHHH
Q 036333 263 SGVLQGMISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELG 342 (527)
Q Consensus 263 ~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~lg~s~~lg 342 (527)
... +...........++..++..++.++..+|+.|+..+. +.+|.+...++.+++..++++|.+|.|+.+|
T Consensus 162 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~la~~~g~s~~lg 232 (273)
T TIGR00932 162 AST--EHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAEL-------RPSELFTAGSLLLMFGSAYFADLLGLSMALG 232 (273)
T ss_pred CCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCchHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 111 1112223333333444455566777777776655442 3457778888899999999999999999999
Q ss_pred HHHHHHHhcCCcchhhHHHhHHhHHHHHHHHHHHHhccccc
Q 036333 343 SFAAGVMISTTDLAQHTLEQIEPIRNMFAALFLASIGMLIH 383 (527)
Q Consensus 343 afvaGl~l~~~~~~~~l~~~l~~~~~~f~plFF~~iGl~i~ 383 (527)
||++|+++++.+.++++.++++++.++|.|+||+++|+++|
T Consensus 233 af~aGl~~~~~~~~~~l~~~l~~~~~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 233 AFLAGVVLSESEYRHKLESDLEPIGGVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHHHHHHcCCchHHHHHHHHHhHHHHHHHHHHHHhCccCC
Confidence 99999999998878889999999999999999999999986
No 10
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=6e-42 Score=359.82 Aligned_cols=365 Identities=26% Similarity=0.454 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCcCCCch-HHHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHHHH
Q 036333 101 VVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEM-VQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLG 179 (527)
Q Consensus 101 lil~~a~~~~~l~~rl~lP~iig~IlaGilLGPs~L~~i~~~-~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~~~ 179 (527)
++++.+.+.+.++||+++|.+++|+++|+++||.+++.+++. ...+.++++|+.+++|.+|+|+|.+.+|+++|+.+..
T Consensus 3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~ 82 (380)
T PF00999_consen 3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALAL 82 (380)
T ss_dssp ---------------------------------------------S-SSHHHHS--SSHHHHTTGGGG------------
T ss_pred EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Confidence 445567777778999999999999999999999999987776 8899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-HHHHHH---HhcCChHHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHHHhhHHHHHHHHH
Q 036333 180 GLLQIFLFMFL-CGITAL---LFGIKLSEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFAL 255 (527)
Q Consensus 180 ~~~~~~l~~~~-~~~~~~---~lg~~~~~al~lg~~ls~TS~~vv~~~L~e~~~~~s~~g~l~l~~s~l~D~~~~~l~al 255 (527)
++.++++++.+ +..+.+ ..|+++..++++|.++++||++++.++++|++..+++.++++.+++++||+.+++++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i~~~~~ 162 (380)
T PF00999_consen 83 GLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAIILLSI 162 (380)
T ss_dssp -------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTTTTT--
T ss_pred ccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchhhhhhh
Confidence 99999999888 444443 47899999999999999999999999999999999999999999999999999887766
Q ss_pred HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHh
Q 036333 256 LPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKL 335 (527)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~l 335 (527)
.......+... +.......+ ...+...++.+++.+|+.++..|+. ++.++.+...++++++..++++|.+
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~a~~~ 232 (380)
T PF00999_consen 163 LISLAQASGQS-SLGQLLLSF----LWIILIGIVIGLLFGWLLRRLIRRA-----SPSSEIFILLVLALILLLYGLAEIL 232 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhcccccc-cccchhcch----hhhhhhheeeecccchHHHHhhhhc-----cccchhhHHHHHHHHhhhccccccc
Confidence 55443111110 111111111 1122223333344555555555442 1456777788899999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCcchhhHHHhHHhHH-HHHHHHHHHHhccccchhhhh---HHHHHHHHHHHHHHHHHHHHHHH
Q 036333 336 GLSLELGSFAAGVMISTTDLAQHTLEQIEPIR-NMFAALFLASIGMLIHVHFLW---NHIDILLASVILVITIKTIIVFT 411 (527)
Q Consensus 336 g~s~~lgafvaGl~l~~~~~~~~l~~~l~~~~-~~f~plFF~~iGl~i~~~~l~---~~~~~~l~l~~~~~~~K~~~~~l 411 (527)
|.|+.+|+|++|+++++.+.++++.|++++++ +++.|+||+.+|+++|++.+. ..+...+.+.+..+++|++++++
T Consensus 233 g~s~~l~af~~Gl~~~~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~ 312 (380)
T PF00999_consen 233 GLSGILGAFIAGLILSNSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVYL 312 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccceeeeeehccccccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceeeh
Confidence 99999999999999998888888999999998 899999999999999988873 33444556666677899999999
Q ss_pred HHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHhhhhhHHHHhh
Q 036333 412 VVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKL 475 (527)
Q Consensus 412 ~~~~~~~~~~~~~~lgl~l~~rG~~~lvl~~~a~~~g~i~~~~~~~lv~~~~ls~l~~p~l~~~ 475 (527)
.+++.+.++||+..+|+++++||+++++++..+.+.|.++++.+.+++.++++|.+++|+..+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~ 376 (380)
T PF00999_consen 313 ASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSP 376 (380)
T ss_dssp ----------HHHHTTTTSS--HHHHHHHHHHHHH-----------------------------
T ss_pred hhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988877654
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=100.00 E-value=7.2e-30 Score=280.09 Aligned_cols=341 Identities=12% Similarity=0.088 Sum_probs=248.7
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCcCCCchH------HHHHHHHHHHHHHHHHHhhcCCchHHHHhhhH
Q 036333 102 VIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMV------QVETVAQFGVIFLLFALGLEFSTTKLRVVRAV 175 (527)
Q Consensus 102 il~~a~~~~~l~~rl~lP~iig~IlaGilLGPs~L~~i~~~~------~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~ 175 (527)
+++++.+..++.+|+.+|..+.++++|+++||.+++++++.. ....+.++++.+.+|.+|++++.+.+|+.|+.
T Consensus 22 lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~wrs 101 (810)
T TIGR00844 22 SSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHWVS 101 (810)
T ss_pred HHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHH
Confidence 334455555566699999999999999999999998876432 23339999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--hcCChHHHHHHHHHHhhccHHHHHHHHhhc--cccCCchhHHHHHHHHHhhHHHHH
Q 036333 176 AVLGGLLQIFLFMFLCGITALL--FGIKLSEGIFVGTFLSMSSTAVVLKFLMEK--NSTNALHGQVTIGTLILQDCAVGL 251 (527)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~--lg~~~~~al~lg~~ls~TS~~vv~~~L~e~--~~~~s~~g~l~l~~s~l~D~~~~~ 251 (527)
.+.+...++.++++++++++++ .|++|..|+++|+++++|+|+.+..+++.. .....++..++.+++.+||.++++
T Consensus 102 V~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPVLAssV~kg~~~~rvP~rLR~lL~~ESGlNDGlAfp 181 (810)
T TIGR00844 102 VTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPVLAQSVVSGTFAQKVPGHLRNLLSCESGCNDGLAFP 181 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHHHHHHHHhccccccCChHHHhHHhhhhhcccHHHHH
Confidence 9999999999998888877654 499999999999999999998888887632 125677888999999999999987
Q ss_pred HHHHHHHHhc--C-CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHH
Q 036333 252 LFALLPVLGG--T-SGVLQGMISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLV 328 (527)
Q Consensus 252 l~al~~~l~~--~-~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~ 328 (527)
++.+...+.. . .+.....+.....+.. +++.+++.++..++..|+.++..++.. -..+.+....+++++++
T Consensus 182 fv~LaL~ll~~~~~g~~~~~~w~l~~~L~~-i~~GiliG~vvG~l~~~Ll~~l~rr~~-----i~~esfla~~LaLAli~ 255 (810)
T TIGR00844 182 FVFLSMDLLLYPGRGGEIVKDWICVTILWE-CIFGSILGCIIGYCGRKAIRFAEGKNI-----IDRESFLAFYLILALTC 255 (810)
T ss_pred HHHHHHHHHhccCccccchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcc-----cchhHHHHHHHHHHHHH
Confidence 7644432221 1 1111111111122222 223333334444566676666654421 24555666677888889
Q ss_pred HHHHHHhChhHHHHHHHHHHHhcCCcc-hhhH-HHhHHhH-HHHHHHHHHHHhccccchhhhhH------HHHHHHHHHH
Q 036333 329 AWCSDKLGLSLELGSFAAGVMISTTDL-AQHT-LEQIEPI-RNMFAALFLASIGMLIHVHFLWN------HIDILLASVI 399 (527)
Q Consensus 329 ~~~ae~lg~s~~lgafvaGl~l~~~~~-~~~l-~~~l~~~-~~~f~plFF~~iGl~i~~~~l~~------~~~~~l~l~~ 399 (527)
+.+++.+|.++++++|++|+++++... .++. ...+... ..++...+|+.+|+.+....+.. .|..+++.++
T Consensus 256 ~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~ 335 (810)
T TIGR00844 256 AGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLV 335 (810)
T ss_pred HHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHH
Confidence 999999999999999999999997532 2221 2234333 35888889999999998766632 2333445556
Q ss_pred HHHHHHHHHHHHHHhhc--CCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCC
Q 036333 400 LVITIKTIIVFTVVKGF--GYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHL 449 (527)
Q Consensus 400 ~~~~~K~~~~~l~~~~~--~~~~~~~~~lgl~l~~rG~~~lvl~~~a~~~g~ 449 (527)
+.++.|+.++++...+. ..+++|++++|| .++||..+++++.++++.+.
T Consensus 336 LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 336 VIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred HHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 66788988888764433 468999999999 79999999999999988765
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.97 E-value=3.2e-28 Score=264.94 Aligned_cols=362 Identities=15% Similarity=0.148 Sum_probs=246.0
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCcC-CCchHHHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHHH
Q 036333 100 VVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNF-VSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVL 178 (527)
Q Consensus 100 ~lil~~a~~~~~l~~rl~lP~iig~IlaGilLGPs~L~~-i~~~~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~~ 178 (527)
..+++.+.....+++|+++|.+++++++|+++||...+. ++.++ +.+..+++..++|..|+++|.+.+|++++.+..
T Consensus 4 ~~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~--~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~ 81 (525)
T TIGR00831 4 IELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDR--EIVLFLFLPPLLFEAAMNTDLRELRENFRPIAL 81 (525)
T ss_pred HHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCH--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445556667778999999999999999999999864432 22222 344558999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhcCChHHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHHHhhHHHHHHHHHHH
Q 036333 179 GGLLQIFLFMFLCGITA-LLFGIKLSEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALLP 257 (527)
Q Consensus 179 ~~~~~~~l~~~~~~~~~-~~lg~~~~~al~lg~~ls~TS~~vv~~~L~e~~~~~s~~g~l~l~~s~l~D~~~~~l~al~~ 257 (527)
+++.++++++++++... ++.|.++..++++|+++|+||++++.+++++.+ .+++..+++.|++++||..+++++.+..
T Consensus 82 la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gESllND~~alvlf~~~~ 160 (525)
T TIGR00831 82 IAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGESLLNDGAALVVFAIAV 160 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhhhhcchHHHHHHHHHH
Confidence 99999999998887665 467999999999999999999999999999975 5678889999999999999999887665
Q ss_pred HHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHhCh
Q 036333 258 VLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGL 337 (527)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~lg~ 337 (527)
....+++...........+...++.+++ +++..++..|+.|+.. ..+.....+++++++++++++|.+|.
T Consensus 161 ~~~~~~~~~~~~~~~~~f~~~~~~gi~v-G~~~g~~~~~l~~~~~---------~~~~~~~~l~l~~~~~~y~lAe~lg~ 230 (525)
T TIGR00831 161 AVALGKGVFDPLNAALDFAVVCVGGIAA-GLAVGYLAYRLLRAKI---------DDPLVEIALTILAPFAGFLLAERFHF 230 (525)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc---------cccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5443222111111111111111122222 2222234444433211 22334456688899999999999999
Q ss_pred hHHHHHHHHHHHhcCCcc----hhhHHHhH----HhHHHHHHHHHHHHhccccchhhhhHHH------H-H-H-------
Q 036333 338 SLELGSFAAGVMISTTDL----AQHTLEQI----EPIRNMFAALFLASIGMLIHVHFLWNHI------D-I-L------- 394 (527)
Q Consensus 338 s~~lgafvaGl~l~~~~~----~~~l~~~l----~~~~~~f~plFF~~iGl~i~~~~l~~~~------~-~-~------- 394 (527)
|+++++|++|+++++... ..+..++. +.+..++.+++|+.+|++++. .+.+.+ + . .
T Consensus 231 SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~-~~~~~~~~~~~~~~~~~~~~~~~~ 309 (525)
T TIGR00831 231 SGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPG-TIFSAWKEILVAPAAVILALFTNA 309 (525)
T ss_pred CHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhhhhHHHHHHHHHHH
Confidence 999999999999997522 12222223 334568899999999999864 121111 0 0 1
Q ss_pred HHHHHHHHHHHHHHHHHHH--h-----hcCCChHHHHHHHHHHhhHHHHHHHHHHHHh-h--CC-CCc------HHHHHH
Q 036333 395 LASVILVITIKTIIVFTVV--K-----GFGYNNKTSVLVGMSLAQIGEFAFVLLSRSS-N--LH-LVE------GKLYLL 457 (527)
Q Consensus 395 l~l~~~~~~~K~~~~~l~~--~-----~~~~~~~~~~~lgl~l~~rG~~~lvl~~~a~-~--~g-~i~------~~~~~~ 457 (527)
+.+.......|++.++... + ..++++|+++.++| .+.||.++++++..-. . .| ..+ .-++.+
T Consensus 310 ~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~i~~~~~~v 388 (525)
T TIGR00831 310 FVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYELVFLAAGV 388 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHHHHHHHHHH
Confidence 1111223345655443321 1 12467999999999 5999999998875322 1 11 121 233444
Q ss_pred HHHHHHHhhhhhHHHHhhh
Q 036333 458 LLGTTALSLVTTPLLFKLI 476 (527)
Q Consensus 458 lv~~~~ls~l~~p~l~~~~ 476 (527)
++.++++.+++.|++.|+.
T Consensus 389 Vl~TllvqG~tlp~l~r~l 407 (525)
T TIGR00831 389 ILFSLLVQGISLPIFVKRK 407 (525)
T ss_pred HHHHHHHHHhhHHHHHHhc
Confidence 5556677778888877765
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.1e-26 Score=244.34 Aligned_cols=375 Identities=19% Similarity=0.208 Sum_probs=282.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCcCCCch--HHHHHHHHHHHHHHHHHHhhcCCchHHHH
Q 036333 94 RLISDLVVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEM--VQVETVAQFGVIFLLFALGLEFSTTKLRV 171 (527)
Q Consensus 94 ~li~~l~lil~~a~~~~~l~~rl~lP~iig~IlaGilLGPs~L~~i~~~--~~~~~l~~lgl~~llF~~Gle~d~~~lr~ 171 (527)
..+.+..+++.++.....+.+|++.|.+..+++.|++.||.+++..+.. ..-|.+..+.+..++|..|+|+|.+.+|+
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~ 85 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELRR 85 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHHHHHHHHHHHHHhHhcCCHHHHHH
Confidence 3567888888999999999999999999999999999999988877642 23345559999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHh--cCChHHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHHHhhHHH
Q 036333 172 VRAVAVLGGLLQIFLFMFLCGITALLF--GIKLSEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAV 249 (527)
Q Consensus 172 ~~~~~~~~~~~~~~l~~~~~~~~~~~l--g~~~~~al~lg~~ls~TS~~vv~~~L~e~~~~~s~~g~l~l~~s~l~D~~~ 249 (527)
+++....++..+++++.+..+...+++ ++++..|+.+|+++|+|+|.++.++.++. ....+..+++.++|++||..+
T Consensus 86 ~~~~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~i~~~~-~vp~ri~~iL~gESl~ND~~g 164 (429)
T COG0025 86 VWRSILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSPIFKRV-RVPKRIRTILEGESLLNDGVG 164 (429)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHHHHhcC-CCCHHHHHHHHHHHHhhhHHH
Confidence 999999999999999998888887766 78889999999999999999999999886 467889999999999999999
Q ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHH
Q 036333 250 GLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVA 329 (527)
Q Consensus 250 ~~l~al~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~ 329 (527)
++++.+........+..+-.......+. .++..+.+.++..++..|+.+++.++.- ..........+...+..+
T Consensus 165 iv~f~~~l~~~~~~~~~~~~~~~~~fl~-~~~~g~~~G~~iG~l~~~l~~~~~~~~~-----~~~~~~~~i~L~~~~~~~ 238 (429)
T COG0025 165 IVLFKVALAALLGTGAFSLGWALLLFLI-EALGGILLGLLLGYLLGRLLRRLDRRGW-----TSPLLETLLTLLLAFAAY 238 (429)
T ss_pred HHHHHHHHHHHhccCCCchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHccc-----cchHHHHHHHHHHHHHHH
Confidence 9988766554443222110111122222 2222223333334455666666665421 234455677899999999
Q ss_pred HHHHHhChhHHHHHHHHHHHhcCC----cch---hhHHHhHHh-HHHHHHHHHHHHhccccchhhhhHH-HHHHHHHHHH
Q 036333 330 WCSDKLGLSLELGSFAAGVMISTT----DLA---QHTLEQIEP-IRNMFAALFLASIGMLIHVHFLWNH-IDILLASVIL 400 (527)
Q Consensus 330 ~~ae~lg~s~~lgafvaGl~l~~~----~~~---~~l~~~l~~-~~~~f~plFF~~iGl~i~~~~l~~~-~~~~l~l~~~ 400 (527)
.++|.+|.|+.++++++|++..+. ... +...+.++. +.-++..+.|+..|++++....... +..++.++.+
T Consensus 239 ~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~~~~~l~~~~~ 318 (429)
T COG0025 239 LLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLLVALVA 318 (429)
T ss_pred HHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHH
Confidence 999999999999999999988511 111 222223333 3457788889999999998776654 4556677778
Q ss_pred HHHHHHHHHHHHHhhcC------CChHHHHHHHHHHhhHHHHHHHHHHHHhhCC------CCcHHHHHHHHHHHHHhhhh
Q 036333 401 VITIKTIIVFTVVKGFG------YNNKTSVLVGMSLAQIGEFAFVLLSRSSNLH------LVEGKLYLLLLGTTALSLVT 468 (527)
Q Consensus 401 ~~~~K~~~~~l~~~~~~------~~~~~~~~lgl~l~~rG~~~lvl~~~a~~~g------~i~~~~~~~lv~~~~ls~l~ 468 (527)
.+++|+++++...+..+ .+++|+++++| -++||.++++++....... .+..-.+.+++.++++.+++
T Consensus 319 ~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~Sl~v~g~t 397 (429)
T COG0025 319 VLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIVFLVILFSLLVQGLT 397 (429)
T ss_pred HHHHHHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHHHHHHHhhh
Confidence 88999999999998743 78999999999 5999999999887665321 22234444555566667777
Q ss_pred hHHHHhhh
Q 036333 469 TPLLFKLI 476 (527)
Q Consensus 469 ~p~l~~~~ 476 (527)
.|++.+..
T Consensus 398 ~~~l~~~~ 405 (429)
T COG0025 398 LPPLAKKL 405 (429)
T ss_pred HHHHHHHh
Confidence 77776654
No 14
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1e-25 Score=227.73 Aligned_cols=363 Identities=18% Similarity=0.242 Sum_probs=288.3
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCcCCC--chHHHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHH
Q 036333 100 VVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVS--EMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAV 177 (527)
Q Consensus 100 ~lil~~a~~~~~l~~rl~lP~iig~IlaGilLGPs~L~~i~--~~~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~ 177 (527)
.++++++.+...++.|+|.|..+-++..|++.|.-|+|.++ +.+.-..++++++++++|..|+.++++.+|...++++
T Consensus 13 svlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a~~pal 92 (574)
T COG3263 13 SVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVAAGPAL 92 (574)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHHHhhhhH
Confidence 36677888899999999999999999999999999999665 3456678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhcCChHHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHHHhhHHHHHH-HHH
Q 036333 178 LGGLLQIFLFMFLCGITA-LLFGIKLSEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLL-FAL 255 (527)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~-~~lg~~~~~al~lg~~ls~TS~~vv~~~L~e~~~~~s~~g~l~l~~s~l~D~~~~~l-~al 255 (527)
.++.++++++..+.+..+ |.++.+|.+++++|+++..|+.+.+..+|.+.+ +|.+.+.++.-+|--||-.+.++ +++
T Consensus 93 sLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~stLEiESGtNDPmAvfLTitl 171 (574)
T COG3263 93 SLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAVFSLLGGKN-LNERVASTLEIESGSNDPMAVFLTITL 171 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhccccHHHHHHHHccCC-hhhhhhhhEEeecCCCCceeeehhHHH
Confidence 999999999988888765 778999999999999999999999999997776 57788888888999999887655 345
Q ss_pred HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHh
Q 036333 256 LPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKL 335 (527)
Q Consensus 256 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~l 335 (527)
+...+.+.+.. ++. +...++...++.++..+.+.++..++.+ +.. -++.+|.+++++..+..+.+++.+
T Consensus 172 ieli~~get~l-~~~-~ll~f~~q~glG~l~G~~gg~l~~~~In----r~n-----Ld~GL~pil~la~~Ll~fs~t~ai 240 (574)
T COG3263 172 IELIAGGETNL-SWG-FLLGFLQQFGLGLLLGLGGGKLLLQLIN----RIN-----LDSGLYPILALAGGLLIFSLTGAI 240 (574)
T ss_pred HHHHhcccccc-CHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHH----hhc-----cccchhHHHHHHHHHHHHHHHHHh
Confidence 44444443321 111 1112233344444445555555555433 322 446778888999999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCcc--hhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHHHH-HHHHHHHHHHHHHHHHHHHH
Q 036333 336 GLSLELGSFAAGVMISTTDL--AQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHID-ILLASVILVITIKTIIVFTV 412 (527)
Q Consensus 336 g~s~~lgafvaGl~l~~~~~--~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~~-~~l~l~~~~~~~K~~~~~l~ 412 (527)
|.|+.++.+++|+.+.|.|. ++.+.+..+.+.++...+.|...|+.++++.++.... .+++.+.+.++.|++++|+.
T Consensus 241 GGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~iavPailL~l~mifvaRP~aV~l~ 320 (574)
T COG3263 241 GGSGILAVYLAGLLLGNRPIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIPAILLSLWMIFVARPLAVFLG 320 (574)
T ss_pred cCcccHHHHHHHHHhCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhhHHHHHHHHHHHHHHhHHHHHHh
Confidence 99999999999999999854 5667778888999999999999999999999887543 34555667789999999999
Q ss_pred HhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCCcHHH-----HHHHHHHHHHhhhhhHHHHhh
Q 036333 413 VKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKL-----YLLLLGTTALSLVTTPLLFKL 475 (527)
Q Consensus 413 ~~~~~~~~~~~~~lgl~l~~rG~~~lvl~~~a~~~g~i~~~~-----~~~lv~~~~ls~l~~p~l~~~ 475 (527)
...++.+++|.++++| .+-||.++++++....-.|.-+.+. |-+++.+.+++.=+-|...+.
T Consensus 321 l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlliQG~tl~~~a~~ 387 (574)
T COG3263 321 LIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLIQGSTLPWAAKK 387 (574)
T ss_pred hcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHHccCcchHHHHh
Confidence 9999999999999999 6999999999999888777655433 333333445555455555544
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.94 E-value=8.4e-24 Score=230.55 Aligned_cols=352 Identities=13% Similarity=0.156 Sum_probs=238.3
Q ss_pred HHHHhc-CCchHHHHHHHHHHhCCCCCcC--CCch-HHHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHHHHHHHHHHH
Q 036333 111 IAFACA-GQPVITGYLLAGSIIGPGGFNF--VSEM-VQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFL 186 (527)
Q Consensus 111 ~l~~rl-~lP~iig~IlaGilLGPs~L~~--i~~~-~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~~~~~~~~~l 186 (527)
..-++. ++|..+..++.|+++|+...+. .+.. -.-+.+-.+.+..++|..|.++|.+.++++++.++..++.++++
T Consensus 27 ~~~~~~~~lP~s~llil~GlllG~i~~~~~~~~~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvli 106 (559)
T TIGR00840 27 LTHKVIRAVPESVLLIVYGLLVGGIIKASPHIDPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLI 106 (559)
T ss_pred HHHhhcccCCHHHHHHHHHHHHHHHHHcCCCCccCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333455 5999999999999999753221 1111 12355666788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHH---------hcCChHHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHHHhhHHHHHHHHHHH
Q 036333 187 FMFLCGITALL---------FGIKLSEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALLP 257 (527)
Q Consensus 187 ~~~~~~~~~~~---------lg~~~~~al~lg~~ls~TS~~vv~~~L~e~~~~~s~~g~l~l~~s~l~D~~~~~l~al~~ 257 (527)
++++.+...++ .+.++..++++|+++|+|+|+.+..++++.+ .+.+.-.++.|+|++||..+++++.++.
T Consensus 107 t~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gESllNDavaIVLf~~~~ 185 (559)
T TIGR00840 107 NAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGESLLNDAVTVVLYNTFI 185 (559)
T ss_pred HHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehhhhhhccHHHHHHHHHH
Confidence 98888776542 1458999999999999999999999999986 5778889999999999999999887665
Q ss_pred HHhcC-CCcchhHHHH----HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHH
Q 036333 258 VLGGT-SGVLQGMISI----TKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCS 332 (527)
Q Consensus 258 ~l~~~-~~~~~~~~~~----~~~~l~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~a 332 (527)
.+... .+.. ...++ ...+...++ .++++++..++..++.|+... .+.....++++++++++.++
T Consensus 186 ~~~~~~~~~~-~~~~~~~~i~~f~~~~~G-GiliG~v~G~l~~~l~r~~~~---------~~~~e~~l~l~~~yl~Y~lA 254 (559)
T TIGR00840 186 KFHKTADEPV-TIVDVFEGCASFFVVTCG-GLLVGVVFGFLVAFITRFTHH---------IRQIEPLFVFLISYLSYLFA 254 (559)
T ss_pred HHHhcCCCCc-cHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcc---------cchhHHHHHHHHHHHHHHHH
Confidence 54321 1111 11111 111111112 222222333344444444321 12344566788889999999
Q ss_pred HHhChhHHHHHHHHHHHhcCC---cchhh----HHHhHHhHHHHHHHHHHHHhccccchh-hhhHHHHHHHHHHHHHHHH
Q 036333 333 DKLGLSLELGSFAAGVMISTT---DLAQH----TLEQIEPIRNMFAALFLASIGMLIHVH-FLWNHIDILLASVILVITI 404 (527)
Q Consensus 333 e~lg~s~~lgafvaGl~l~~~---~~~~~----l~~~l~~~~~~f~plFF~~iGl~i~~~-~l~~~~~~~l~l~~~~~~~ 404 (527)
|.+|.|++++++++|+++++. ...++ ..+..+.+..+...+.|+.+|+.+... ..+ .|...+..++.+++.
T Consensus 255 E~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~-~~~~i~~~l~~~ll~ 333 (559)
T TIGR00840 255 ETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEW-NWAFVVATLSFCVIY 333 (559)
T ss_pred HHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhH-HHHHHHHHHHHHHHH
Confidence 999999999999999999752 12222 222333445678888899999976322 112 122333444556788
Q ss_pred HHHHHHHHHhh------cCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCCcHHH-----HHHHHHHHHHhhhhhHHHH
Q 036333 405 KTIIVFTVVKG------FGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKL-----YLLLLGTTALSLVTTPLLF 473 (527)
Q Consensus 405 K~~~~~l~~~~------~~~~~~~~~~lgl~l~~rG~~~lvl~~~a~~~g~i~~~~-----~~~lv~~~~ls~l~~p~l~ 473 (527)
|+++++..++. .+.+++|.+.++| .+.||.++++++....+.+.-..+. +.++++++++.+.+.|.+.
T Consensus 334 R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~TvlvqG~T~~pl~ 412 (559)
T TIGR00840 334 RVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFTVIFQGGTIKPLV 412 (559)
T ss_pred HHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehHHHHHHHhhHHHHH
Confidence 99998876643 3579999999999 5999999999886554333322222 2223345556666666665
Q ss_pred hhh
Q 036333 474 KLI 476 (527)
Q Consensus 474 ~~~ 476 (527)
+++
T Consensus 413 ~~L 415 (559)
T TIGR00840 413 EVL 415 (559)
T ss_pred HHh
Confidence 554
No 16
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.79 E-value=7.8e-16 Score=160.30 Aligned_cols=297 Identities=16% Similarity=0.165 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchH----HHHhhhHH--HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhccH
Q 036333 144 QVETVAQFGVIFLLFALGLEFSTTK----LRVVRAVA--VLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSST 217 (527)
Q Consensus 144 ~~~~l~~lgl~~llF~~Gle~d~~~----lr~~~~~~--~~~~~~~~~l~~~~~~~~~~~lg~~~~~al~lg~~ls~TS~ 217 (527)
..+-+.+.-+.++.|.+|+|++.+. +++.+|.+ ...++.++++|.++-..+.+ + +....--+| +-..||.
T Consensus 62 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPaliy~~~n~--~-~~~~~~GW~-Ip~ATDI 137 (423)
T PRK14853 62 LGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIYVAVNL--A-GGGALRGWA-IPTATDI 137 (423)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHHHHHHhC--C-chhhhhhhh-hhhhhHH
Confidence 4455667777889999999997763 33333333 35677888888755433221 1 111122223 2334899
Q ss_pred HHHHHHHhhcccc-CCchhHHHHHHHHHhhHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 036333 218 AVVLKFLMEKNST-NALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPW 296 (527)
Q Consensus 218 ~vv~~~L~e~~~~-~s~~g~l~l~~s~l~D~~~~~l~al~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~~~~~ 296 (527)
+.+.+++...+.. ++..+..+++.+++||+.++++++++. +++. +........+.+ ++.+++ .
T Consensus 138 AFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfY----t~~i-----~~~~L~~a~~~~-~~l~~l-----~- 201 (423)
T PRK14853 138 AFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFY----TSEL-----NLEALLLALVPL-ALFWLL-----V- 201 (423)
T ss_pred HHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhhecc----CCCC-----CHHHHHHHHHHH-HHHHHH-----H-
Confidence 9999999997754 788888999999999999998887654 1111 112222211111 111111 1
Q ss_pred HHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcCC------------cchhhHHHhHH
Q 036333 297 LLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTT------------DLAQHTLEQIE 364 (527)
Q Consensus 297 l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~lg~s~~lgafvaGl~l~~~------------~~~~~l~~~l~ 364 (527)
++ +.++.+.+.++ .+..++.++..|+|+.+|+|++|+++|.. +..++++|+++
T Consensus 202 ------~~-------~V~~~~~Y~il--g~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~ 266 (423)
T PRK14853 202 ------QK-------RVRKWWLLLPL--GVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLR 266 (423)
T ss_pred ------Hc-------CCchhhHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHH
Confidence 11 23334444333 44778899999999999999999999842 12467889999
Q ss_pred hHH-HHHHHHH-HHHhccccch-hhhhHHH--HHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHH
Q 036333 365 PIR-NMFAALF-LASIGMLIHV-HFLWNHI--DILLASVILVITIKTIIVFTVVKGF----------GYNNKTSVLVGMS 429 (527)
Q Consensus 365 ~~~-~~f~plF-F~~iGl~i~~-~~l~~~~--~~~l~l~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~ 429 (527)
++. .+++|+| |+..|.++|. +.+.+.. ...+.+++..+++|+++++..++.. +++|++-.-+|+
T Consensus 267 p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~- 345 (423)
T PRK14853 267 PLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVAL- 345 (423)
T ss_pred HHHHHHHHHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHH-
Confidence 986 6999999 9999999986 4342322 2556777788899999988776643 567898888888
Q ss_pred HhhHH-HHHHHHHHHHhh-CCCCcHHHHHHHHHHHHHhhhhhHHHHhhh
Q 036333 430 LAQIG-EFAFVLLSRSSN-LHLVEGKLYLLLLGTTALSLVTTPLLFKLI 476 (527)
Q Consensus 430 l~~rG-~~~lvl~~~a~~-~g~i~~~~~~~lv~~~~ls~l~~p~l~~~~ 476 (527)
++..| ++++-+++.+.+ .....++.-.-++...+++.+++-.+.|..
T Consensus 346 L~GIGFTmSlFI~~LAf~~~~~~~~~aKigil~~S~~s~~~G~~~l~~~ 394 (423)
T PRK14853 346 LAGIGFTVSLLIGELAFGGGSARDDAVKVGVLTGSLIAALLASVLLRLR 394 (423)
T ss_pred HHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78889 899999999984 332334444445556677777776666543
No 17
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.75 E-value=5.8e-16 Score=152.39 Aligned_cols=337 Identities=13% Similarity=0.069 Sum_probs=229.1
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCcCCCc------hHHHHHHHHHHHHHHHHHHhhcCCchHHHHhhhH
Q 036333 102 VIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSE------MVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAV 175 (527)
Q Consensus 102 il~~a~~~~~l~~rl~lP~iig~IlaGilLGPs~L~~i~~------~~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~ 175 (527)
+.+++...-.+=+++-+...+.-.+.|+++||..+++.++ +.....++.+-+..=.|.++.|+..+.+.++|+.
T Consensus 22 ~slF~l~S~yikekLllgEa~va~itGlI~Gphvlnlfdp~~wgn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~S 101 (467)
T KOG4505|consen 22 VSLFGLASLYIKEKLLLGEATVAVITGLIFGPHVLNLFDPNSWGNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRS 101 (467)
T ss_pred HHHHHHHHHHHHHhHhccchHHhhhhheeechhhhhhcCCccccCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHH
Confidence 3344444445556676777777789999999999988763 2356778889999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-h-cCChHHHHHHHHHHhhccHHHHHHHHhhcccc---CCchhHHHHHHHHHhhHHHH
Q 036333 176 AVLGGLLQIFLFMFLCGITALL-F-GIKLSEGIFVGTFLSMSSTAVVLKFLMEKNST---NALHGQVTIGTLILQDCAVG 250 (527)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~-l-g~~~~~al~lg~~ls~TS~~vv~~~L~e~~~~---~s~~g~l~l~~s~l~D~~~~ 250 (527)
...+-.--++.-.++.+...|. . +.+...++.+++++.+|+|.....+..+.+.. ..+...++.+++-.||..++
T Consensus 102 i~vlllpVmi~gwlvs~~fvy~l~p~lnf~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMai 181 (467)
T KOG4505|consen 102 IFVLLLPVMIIGWLVSFGFVYALIPNLNFLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMAI 181 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCCcch
Confidence 7655333233333333333333 3 78899999999999999998888887765543 34556688899999999998
Q ss_pred HHHHHHHHHhcCCC---cchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhccccccchhHHHHHHHHHHHH
Q 036333 251 LLFALLPVLGGTSG---VLQGMISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLL 327 (527)
Q Consensus 251 ~l~al~~~l~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~ 327 (527)
+++-+..-+..... ..-++. ...++.-+.|..+...+..++.+...|+..+++- -++|.+...-+++++.
T Consensus 182 pflflai~Ll~h~~~r~~~rdwv--~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrl-----id~eSfl~~~vvl~lf 254 (467)
T KOG4505|consen 182 PFLFLAIDLLRHKPRRKAGRDWV--CDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRL-----IDRESFLIFYVVLALF 254 (467)
T ss_pred hHHHHHHHHHhcCchhccCCcee--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHH
Confidence 87655443321111 111121 1122222333333333344455555666565543 6788998888999999
Q ss_pred HHHHHHHhChhHHHHHHHHHHHhcCC-cchhhHHH-hHHhHHH-HHHHHHHHHhccccchhhhhHH-----HHHHHHHHH
Q 036333 328 VAWCSDKLGLSLELGSFAAGVMISTT-DLAQHTLE-QIEPIRN-MFAALFLASIGMLIHVHFLWNH-----IDILLASVI 399 (527)
Q Consensus 328 ~~~~ae~lg~s~~lgafvaGl~l~~~-~~~~~l~~-~l~~~~~-~f~plFF~~iGl~i~~~~l~~~-----~~~~l~l~~ 399 (527)
+..+.+.+|.+-.+-.|.||.+++-. -+.++..| ++..+.| ++.-.||++.|..++.+.+... .|-.+++.+
T Consensus 255 c~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlvilsi 334 (467)
T KOG4505|consen 255 CMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLVILSI 334 (467)
T ss_pred HhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHHHHHH
Confidence 99999999999999999999999954 34444444 6777765 7778899999999998776321 122333333
Q ss_pred HHHHH-HHHHHHHHHhhc--CCChHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 036333 400 LVITI-KTIIVFTVVKGF--GYNNKTSVLVGMSLAQIGEFAFVLLSRSSN 446 (527)
Q Consensus 400 ~~~~~-K~~~~~l~~~~~--~~~~~~~~~lgl~l~~rG~~~lvl~~~a~~ 446 (527)
+.++. |+-++++.-... =.+|||++++|. .+|.|.-++..+..+..
T Consensus 335 ~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly~allar~ 383 (467)
T KOG4505|consen 335 TIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALYYALLARK 383 (467)
T ss_pred HHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHHh
Confidence 44444 444433322111 136999999999 89999999888877754
No 18
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.72 E-value=8.9e-16 Score=162.54 Aligned_cols=370 Identities=15% Similarity=0.145 Sum_probs=233.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC---CchHHHHHHHHHHhCCCCCcC----CC---chH--HHHHHHHHHHHHHHHHHhhc
Q 036333 96 ISDLVVVIVFATCGGIAFACAG---QPVITGYLLAGSIIGPGGFNF----VS---EMV--QVETVAQFGVIFLLFALGLE 163 (527)
Q Consensus 96 i~~l~lil~~a~~~~~l~~rl~---lP~iig~IlaGilLGPs~L~~----i~---~~~--~~~~l~~lgl~~llF~~Gle 163 (527)
++-.+.+++++.+.++++++-| +|.-+.-++.|+++|-..... .+ ... .=+.+-.+-+.-+.|..|.+
T Consensus 37 l~~~i~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vLLPpiif~sgy~ 116 (575)
T KOG1965|consen 37 LLFFILLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVLLPPIIFNSGYS 116 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHhhchhhhcccce
Confidence 3556667778889999999999 999999999999999532211 11 000 11234445556689999999
Q ss_pred CCchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh-------cCChHHHHHHHHHHhhccHHHHHHHHhhccccCCchhH
Q 036333 164 FSTTKLRVVRAVAVLGGLLQIFLFMFLCGITALLF-------GIKLSEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQ 236 (527)
Q Consensus 164 ~d~~~lr~~~~~~~~~~~~~~~l~~~~~~~~~~~l-------g~~~~~al~lg~~ls~TS~~vv~~~L~e~~~~~s~~g~ 236 (527)
++.+.+.++.......++.++.+...+.+...+++ ++++.+++++|+.+|+|+|..+..++.|++. ..+.=.
T Consensus 117 l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~v-d~~Ly~ 195 (575)
T KOG1965|consen 117 LKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNELGV-DPKLYT 195 (575)
T ss_pred echhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHHHhCC-Ccceee
Confidence 99999999999999999988877665555444433 4689999999999999999999999999974 344457
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhcCCCcchhH----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhcccccc
Q 036333 237 VTIGTLILQDCAVGLLFALLPVLGGTSGVLQGM----ISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQ 312 (527)
Q Consensus 237 l~l~~s~l~D~~~~~l~al~~~l~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~ 312 (527)
++.|++++||..+++++..+......+...... ..+........+..+...++. ..+.|...-+. .+
T Consensus 196 LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~Glis----A~~lK~~~l~~-----~~ 266 (575)
T KOG1965|consen 196 LVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLIS----ALVLKFLYLRR-----TP 266 (575)
T ss_pred eeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhcC-----Cc
Confidence 899999999999999988776655432211111 111111111111111122222 22222222211 13
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcCC------cchhhHHHhHHhHHHHHHHHH-HHHhcccc-ch
Q 036333 313 TNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTT------DLAQHTLEQIEPIRNMFAALF-LASIGMLI-HV 384 (527)
Q Consensus 313 ~~e~~~~~~l~~~l~~~~~ae~lg~s~~lgafvaGl~l~~~------~~~~~l~~~l~~~~~~f~plF-F~~iGl~i-~~ 384 (527)
..| ..+.+.+....+++||.+|+|+++..+..|+.+++. +..+...+....+..++.--| |+++|+.+ +.
T Consensus 267 ~lE--~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~ 344 (575)
T KOG1965|consen 267 SLE--SALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDF 344 (575)
T ss_pred HHH--HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence 444 456778889999999999999999999999999963 233333444444445555555 99999633 22
Q ss_pred hhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhcC----------CChHHHHHHHHHHhhHHHHHHHHHHHHhhC------
Q 036333 385 HFLWNH-IDILLASVILVITIKTIIVFTVVKGFG----------YNNKTSVLVGMSLAQIGEFAFVLLSRSSNL------ 447 (527)
Q Consensus 385 ~~l~~~-~~~~l~l~~~~~~~K~~~~~l~~~~~~----------~~~~~~~~lgl~l~~rG~~~lvl~~~a~~~------ 447 (527)
...... ...+....+.++++|.+-++-...+.+ .+.++-..+.|.=..||.++++++..-...
T Consensus 345 ~k~~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~~~~ 424 (575)
T KOG1965|consen 345 QKHVYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPHTGG 424 (575)
T ss_pred cceeeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccccccc
Confidence 222111 122344455666778776655554433 344445566665448999999987533211
Q ss_pred CCCcHHHHHHHHHHH-HHhhhhhHHHHhhhh
Q 036333 448 HLVEGKLYLLLLGTT-ALSLVTTPLLFKLIP 477 (527)
Q Consensus 448 g~i~~~~~~~lv~~~-~ls~l~~p~l~~~~p 477 (527)
..+-..+-.++++++ ++-..+.|.+..+-+
T Consensus 425 q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~ 455 (575)
T KOG1965|consen 425 QTIFTTTLVVVLFTVLVFGGSTKPMLSYLMI 455 (575)
T ss_pred cEEEEeeeeeeeeeeeeeCCccHHHHHHhcc
Confidence 112222223333343 335577788777654
No 19
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.53 E-value=1.1e-11 Score=127.28 Aligned_cols=262 Identities=17% Similarity=0.196 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchHHH----HhhhH--HHHHHHHHHHHHHHHHHHHHH-----HhcCChHHHHHHHHHH
Q 036333 144 QVETVAQFGVIFLLFALGLEFSTTKLR----VVRAV--AVLGGLLQIFLFMFLCGITAL-----LFGIKLSEGIFVGTFL 212 (527)
Q Consensus 144 ~~~~l~~lgl~~llF~~Gle~d~~~lr----~~~~~--~~~~~~~~~~l~~~~~~~~~~-----~lg~~~~~al~lg~~l 212 (527)
..+-+.+.-+.++.|.+|+|++.+.+. +.+|. ....++.+++.|.++-..+.. .-|+..+.+
T Consensus 52 l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~~~n~~~~~~~~GW~IP~A------- 124 (373)
T TIGR00773 52 LLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYLAFNANDPITREGWAIPAA------- 124 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhheecCCCcccCccccccH-------
Confidence 445566777788999999999888553 22333 345677888888765443321 123333333
Q ss_pred hhccHHHHHHHHhhcc-ccCCchhHHHHHHHHHhhHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 036333 213 SMSSTAVVLKFLMEKN-STNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSR 291 (527)
Q Consensus 213 s~TS~~vv~~~L~e~~-~~~s~~g~l~l~~s~l~D~~~~~l~al~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r 291 (527)
|+.+....++.=.+ .........+++.+++||+.++++++++.. ++ .+..+.....+++ ++.++
T Consensus 125 --TDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt----~~-----i~~~~L~~a~~~~-~~l~~--- 189 (373)
T TIGR00773 125 --TDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYT----ND-----LSMAALLVAAVAI-AVLAV--- 189 (373)
T ss_pred --HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecC----CC-----CCHHHHHHHHHHH-HHHHH---
Confidence 44443333333322 234445678899999999999887766431 11 1122222221111 11111
Q ss_pred hhHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcCC-cc----hhhHHHhHHhH
Q 036333 292 TCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTT-DL----AQHTLEQIEPI 366 (527)
Q Consensus 292 ~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~lg~s~~lgafvaGl~l~~~-~~----~~~l~~~l~~~ 366 (527)
. +|+ +.++...+..+. +..++..+..|+|+.+|+|++|+++|+. +. .+++++.+++.
T Consensus 190 --~-------~~~-------~v~~~~~y~~lg--vllW~~~~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~ 251 (373)
T TIGR00773 190 --L-------NRC-------GVRRLGPYMLVG--VILWFAVLKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPW 251 (373)
T ss_pred --H-------HHc-------CCchhhHHHHHH--HHHHHHHHHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHH
Confidence 1 111 223333333222 3344444899999999999999999974 11 35677777777
Q ss_pred H-HHHHHHH-HHHhccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHHhhH
Q 036333 367 R-NMFAALF-LASIGMLIHVHFLWNH-IDILLASVILVITIKTIIVFTVVKGF----------GYNNKTSVLVGMSLAQI 433 (527)
Q Consensus 367 ~-~~f~plF-F~~iGl~i~~~~l~~~-~~~~l~l~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~l~~r 433 (527)
. .+++|+| |+..|.++|...+... .+..+.+++..+++|+++++..++.. +++|++-.-+|+ ++..
T Consensus 252 v~~lilPlFAFanAGv~l~~~~~~~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~-L~GI 330 (373)
T TIGR00773 252 VAYLILPLFAFANAGVSLQGVSLNGLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGV-LCGI 330 (373)
T ss_pred HHHHHHHHHHHHhcCeeeecCcchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHH
Confidence 6 5788999 9999999986444322 23456667778899999999887753 567899888888 7888
Q ss_pred H-HHHHHHHHHHhh
Q 036333 434 G-EFAFVLLSRSSN 446 (527)
Q Consensus 434 G-~~~lvl~~~a~~ 446 (527)
| ++++-+++.+.+
T Consensus 331 GFTmSlfI~~LAf~ 344 (373)
T TIGR00773 331 GFTMSIFIASLAFG 344 (373)
T ss_pred HHHHHHHHHHHhcC
Confidence 8 889999998884
No 20
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.42 E-value=9.2e-11 Score=122.20 Aligned_cols=295 Identities=15% Similarity=0.153 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchHHH----HhhhH--HHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhccH
Q 036333 144 QVETVAQFGVIFLLFALGLEFSTTKLR----VVRAV--AVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSST 217 (527)
Q Consensus 144 ~~~~l~~lgl~~llF~~Gle~d~~~lr----~~~~~--~~~~~~~~~~l~~~~~~~~~~~lg~~~~~al~lg~~ls~TS~ 217 (527)
..+-+.+.-+.++.|.+|+|+..+.+. +.+|. .+..++.++++|.++-..+.. +.+ ..--+|+-. .|+.
T Consensus 68 l~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~~~n~--~~~--~~~GWgIPm-ATDI 142 (438)
T PRK14856 68 LHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYFFLNA--DTP--SQHGFGIPM-ATDI 142 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHhheec--CCC--ccCcccccc-HHHH
Confidence 445567777888999999999887543 22232 345577888888655433211 111 111122222 2555
Q ss_pred HHHHHHHhhccc-cCCchhHHHHHHHHHhhHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 036333 218 AVVLKFLMEKNS-TNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPW 296 (527)
Q Consensus 218 ~vv~~~L~e~~~-~~s~~g~l~l~~s~l~D~~~~~l~al~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~~~~~ 296 (527)
+....++.=.+. ........+++.+++||+.+++++|++.. ++ .+..+.....+++ ++.++ +++
T Consensus 143 AFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~-----i~~~~L~~a~~~~-~~l~~-----ln~ 207 (438)
T PRK14856 143 AFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT----TN-----LKFAWLLGALGVV-LVLAV-----LNR 207 (438)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----CC-----CcHHHHHHHHHHH-HHHHH-----HHH
Confidence 555555543332 34455578899999999999887766431 11 1122222222111 11111 111
Q ss_pred HHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcCCcc---------------------
Q 036333 297 LLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDL--------------------- 355 (527)
Q Consensus 297 l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~lg~s~~lgafvaGl~l~~~~~--------------------- 355 (527)
. +.+....+.. +.+..++....-|+|+.++..+.|+++|..+.
T Consensus 208 -------~-------~v~~~~~Y~~--~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (438)
T PRK14856 208 -------L-------NVRSLIPYLL--LGVLLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSG 271 (438)
T ss_pred -------c-------CCccccHHHH--HHHHHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccc
Confidence 1 1122222222 34567888889999999999999999995311
Q ss_pred ------------------------hhhHHHhHHhHHH-HHHHHH-HHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 036333 356 ------------------------AQHTLEQIEPIRN-MFAALF-LASIGMLIHVHFLWNHIDILLASVILVITIKTIIV 409 (527)
Q Consensus 356 ------------------------~~~l~~~l~~~~~-~f~plF-F~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~ 409 (527)
.+++++.+++... +.+|+| |+..|..++.+.......+.+.+.+..+++|++++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~~~pv~lGI~~GLvvGK~lGI 351 (438)
T PRK14856 272 ALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLEVDKVLLGVILGLCLGKPLGI 351 (438)
T ss_pred cccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhccCcHHHHHHHHHHhcchHHH
Confidence 1345556666654 889999 99999999854322222455666777889999999
Q ss_pred HHHHhhc----------CCChHHHHHHHHHHhhHH-HHHHHHHHHHhhC--CCCcHHHHHHHHHHHHHhhhhhHHHHhh
Q 036333 410 FTVVKGF----------GYNNKTSVLVGMSLAQIG-EFAFVLLSRSSNL--HLVEGKLYLLLLGTTALSLVTTPLLFKL 475 (527)
Q Consensus 410 ~l~~~~~----------~~~~~~~~~lgl~l~~rG-~~~lvl~~~a~~~--g~i~~~~~~~lv~~~~ls~l~~p~l~~~ 475 (527)
+..++.. +++|++-.-+|+ ++..| ++++-+++.+.+. ....++.-.-++...+++.+++-++.|+
T Consensus 352 ~~~s~lavkl~~a~lP~g~~w~~l~gv~~-LaGIGFTmSLFIa~LAF~~~~~~~~~~aKigIL~gS~lsai~G~~~L~~ 429 (438)
T PRK14856 352 FLITFISEKLKITARPKGISWWHILGAGL-LAGIGFTMSMFISNLAFTSEHKDAMEVAKIAILLGSLISGIIGALYLFA 429 (438)
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887653 567898888888 78899 8899999999843 3233444444555667777777666554
No 21
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.31 E-value=1.2e-09 Score=113.54 Aligned_cols=291 Identities=17% Similarity=0.120 Sum_probs=176.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchHHH----HhhhH--HHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhccH
Q 036333 144 QVETVAQFGVIFLLFALGLEFSTTKLR----VVRAV--AVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSST 217 (527)
Q Consensus 144 ~~~~l~~lgl~~llF~~Gle~d~~~lr----~~~~~--~~~~~~~~~~l~~~~~~~~~~~lg~~~~~al~lg~~ls~TS~ 217 (527)
..+-+.+--+.++.|.+|+|++.+.+. +.+|. .+..++.++++|.++-..+.. |.+ ..--+|+-. .|+.
T Consensus 63 l~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~~~n~--~~~--~~~GWgIPm-ATDI 137 (423)
T PRK14855 63 LEHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYTALNA--GGP--GASGWGVPM-ATDI 137 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHheeec--CCC--ccCcccccc-HHHH
Confidence 345566677778999999999888553 22222 345577788888655433211 111 111122222 2555
Q ss_pred HHHHHHHhhccc-cCCchhHHHHHHHHHhhHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 036333 218 AVVLKFLMEKNS-TNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPW 296 (527)
Q Consensus 218 ~vv~~~L~e~~~-~~s~~g~l~l~~s~l~D~~~~~l~al~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~~~~~ 296 (527)
+....++.=.+. ........+++.+++||+.+++++|++.. ++. +..+.....+++ ++.+++ ++
T Consensus 138 AFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~i-----~~~~L~~a~~~~-~~l~~l-----n~ 202 (423)
T PRK14855 138 AFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT----SGL-----NLLALLLAALTW-ALALLA-----GR 202 (423)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC----CCC-----CHHHHHHHHHHH-HHHHHH-----HH
Confidence 555555544432 33345578899999999999887766431 111 122222222111 111111 11
Q ss_pred HHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcCC--cc-------------------
Q 036333 297 LLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTT--DL------------------- 355 (527)
Q Consensus 297 l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~lg~s~~lgafvaGl~l~~~--~~------------------- 355 (527)
. +.+....+.. +.+..++....-|+|+.++..+.|+++|.. +.
T Consensus 203 -------~-------~v~~~~~Y~~--~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (423)
T PRK14855 203 -------L-------GVTSLKIYAV--LGALLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVV 266 (423)
T ss_pred -------c-------CCccccHHHH--HHHHHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhh
Confidence 1 1222222222 345678888899999999999999999863 11
Q ss_pred -----------------hhhHHHhHHhHHH-HHHHHH-HHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036333 356 -----------------AQHTLEQIEPIRN-MFAALF-LASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKGF 416 (527)
Q Consensus 356 -----------------~~~l~~~l~~~~~-~f~plF-F~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~~~ 416 (527)
.+++++.+++... +.+|+| |+..|..++-..+ . .+.+.+.+..+++|+++++..++..
T Consensus 267 ~~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~~-~--pv~lGI~~GLvvGK~lGI~~~s~la 343 (423)
T PRK14855 267 GARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGGL-G--TVSLGVFLGLLLGKPLGVVGGAWLA 343 (423)
T ss_pred hHHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCCC-C--cHHHHHHHHHHhcchHHHHHHHHHH
Confidence 2356666777655 689999 9999999953321 1 3456666777889999998887653
Q ss_pred ----------CCChHHHHHHHHHHhhHH-HHHHHHHHHHhhCCCCcHHHHHHHHHHHHHhhhhhHHHHh
Q 036333 417 ----------GYNNKTSVLVGMSLAQIG-EFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFK 474 (527)
Q Consensus 417 ----------~~~~~~~~~lgl~l~~rG-~~~lvl~~~a~~~g~i~~~~~~~lv~~~~ls~l~~p~l~~ 474 (527)
+++|++-.-+|+ ++..| ++++-+++.+.+.+...++.-.-++...+++.+++-.+.+
T Consensus 344 vkl~~a~lP~g~~w~~l~gv~~-LaGIGFTmSLFIa~LAF~~~~~~~~aKigIL~~S~~aai~G~~~L~ 411 (423)
T PRK14855 344 VRLGLASLPRRVNWLHMLGAGL-LAGIGFTMSLFISNLAFADAALLTQAKLGVLAASVLAALLGAGWLW 411 (423)
T ss_pred HHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568898888888 78889 8899999999854323334444444455566665554444
No 22
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.31 E-value=1.9e-09 Score=110.90 Aligned_cols=291 Identities=18% Similarity=0.158 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchHHH----HhhhH--HHHHHHHHHHHHHHHHHHHHH-----HhcCChHHHHHHHHHH
Q 036333 144 QVETVAQFGVIFLLFALGLEFSTTKLR----VVRAV--AVLGGLLQIFLFMFLCGITAL-----LFGIKLSEGIFVGTFL 212 (527)
Q Consensus 144 ~~~~l~~lgl~~llF~~Gle~d~~~lr----~~~~~--~~~~~~~~~~l~~~~~~~~~~-----~lg~~~~~al~lg~~l 212 (527)
.-+-+.+.-+.++.|.+|+|++.+.+. +.+|. .+..++.+++.|.++-..+.. .-|+..+.+
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~~~n~g~~~~~~GWgIPmA------- 131 (389)
T PRK09560 59 LLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAAFNYNNPETLRGWAIPAA------- 131 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHheeecCCCcccCccccccH-------
Confidence 345566677788999999999887553 22232 345677888888765443311 123332333
Q ss_pred hhccHHHHHHHHhhcc-ccCCchhHHHHHHHHHhhHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 036333 213 SMSSTAVVLKFLMEKN-STNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSR 291 (527)
Q Consensus 213 s~TS~~vv~~~L~e~~-~~~s~~g~l~l~~s~l~D~~~~~l~al~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r 291 (527)
|+.+....++.=.+ .........+++.+++||+.+++++|++.. ++ .+..+.....+++ ++.+++
T Consensus 132 --TDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt----~~-----i~~~~L~~a~~~~-~~l~~l-- 197 (389)
T PRK09560 132 --TDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT----SD-----LSLPALALAAIAI-AVLFLL-- 197 (389)
T ss_pred --HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC----CC-----CCHHHHHHHHHHH-HHHHHH--
Confidence 44444444444322 234445678899999999999887766431 11 1122222222111 111111
Q ss_pred hhHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcCCc-------chhhHHHhHH
Q 036333 292 TCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTD-------LAQHTLEQIE 364 (527)
Q Consensus 292 ~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~lg~s~~lgafvaGl~l~~~~-------~~~~l~~~l~ 364 (527)
+ |+ +.+....+.. +.+..++....-|+|+.++..+.|+++|..+ ..+++++.++
T Consensus 198 ---n-------~~-------~v~~~~~Y~~--~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~ 258 (389)
T PRK09560 198 ---N-------RL-------GVTKLTPYLI--VGAILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALH 258 (389)
T ss_pred ---H-------Hc-------CCccchHHHH--HHHHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhh
Confidence 1 11 1222222322 3456788888999999999999999999631 1357888899
Q ss_pred hHHH-HHHHHH-HHHhccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHHh
Q 036333 365 PIRN-MFAALF-LASIGMLIHVHFLWNH-IDILLASVILVITIKTIIVFTVVKGF----------GYNNKTSVLVGMSLA 431 (527)
Q Consensus 365 ~~~~-~f~plF-F~~iGl~i~~~~l~~~-~~~~l~l~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~l~ 431 (527)
+... +.+|+| |+..|..++-..+... ....+.+.+..+++|+++++..++.. +.+|++-.-+|+ ++
T Consensus 259 p~v~~~IlPlFAlaNAGV~l~~~~~~~~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~-L~ 337 (389)
T PRK09560 259 PWVAFAILPLFAFANAGVSLAGISLSSLTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSV-LC 337 (389)
T ss_pred hhhhhhhHHHHHhhcCCeeecCCcHHhccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HH
Confidence 8876 559999 9999999953223221 13456667777889999998887653 567898888888 78
Q ss_pred hHH-HHHHHHHHHHhh-CCCCcHHHHHHHHHHHHHhhhhhHHHHhh
Q 036333 432 QIG-EFAFVLLSRSSN-LHLVEGKLYLLLLGTTALSLVTTPLLFKL 475 (527)
Q Consensus 432 ~rG-~~~lvl~~~a~~-~g~i~~~~~~~lv~~~~ls~l~~p~l~~~ 475 (527)
..| ++++-+++.+.+ .+...++.-.-++..++++.+++-.+.|.
T Consensus 338 GIGFTmSLFIa~LAF~~~~~~~~~aKigIL~~S~~aai~g~~~l~~ 383 (389)
T PRK09560 338 GIGFTMSLFIGSLAFGASEELLTEARLGILLGSLLSAILGYLLLRL 383 (389)
T ss_pred HHHHHHHHHHHHhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888 889999999984 21223344444444556666666555443
No 23
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.27 E-value=2.4e-09 Score=109.94 Aligned_cols=291 Identities=16% Similarity=0.139 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchHHH----HhhhH--HHHHHHHHHHHHHHHHHHHHH-----HhcCChHHHHHHHHHH
Q 036333 144 QVETVAQFGVIFLLFALGLEFSTTKLR----VVRAV--AVLGGLLQIFLFMFLCGITAL-----LFGIKLSEGIFVGTFL 212 (527)
Q Consensus 144 ~~~~l~~lgl~~llF~~Gle~d~~~lr----~~~~~--~~~~~~~~~~l~~~~~~~~~~-----~lg~~~~~al~lg~~l 212 (527)
..+-+.+.-+.++.|.+|+|++.+.+. +.+|. ....++.+++.|.++-..+.. .-|+..+.+
T Consensus 59 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~~~n~~~~~~~~GWaIP~A------- 131 (388)
T PRK09561 59 LLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYLLFNYADPVTREGWAIPAA------- 131 (388)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHhheecCCCcccCccccccH-------
Confidence 345566677788999999999888653 22332 345577888888765443311 123333333
Q ss_pred hhccHHHHHHHHhhcc-ccCCchhHHHHHHHHHhhHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 036333 213 SMSSTAVVLKFLMEKN-STNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSR 291 (527)
Q Consensus 213 s~TS~~vv~~~L~e~~-~~~s~~g~l~l~~s~l~D~~~~~l~al~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r 291 (527)
|+.+....++.=.+ .........+++.+++||+.+++++|++.. ++. +........+. .++.++
T Consensus 132 --TDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt----~~i-----~~~~L~~a~~~-~~~l~~--- 196 (388)
T PRK09561 132 --TDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT----SDL-----SMVSLGVAAVA-IAVLAV--- 196 (388)
T ss_pred --HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC----CCc-----cHHHHHHHHHH-HHHHHH---
Confidence 44444444443322 234445678899999999999887766431 111 11122211111 111111
Q ss_pred hhHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcCCc-----chhhHHHhHHhH
Q 036333 292 TCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTD-----LAQHTLEQIEPI 366 (527)
Q Consensus 292 ~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~lg~s~~lgafvaGl~l~~~~-----~~~~l~~~l~~~ 366 (527)
.+ |+ +.+....+.. +.+..++....-|+|+.++..+.|+++|..+ ..+++++++++.
T Consensus 197 --ln-------~~-------~v~~~~~Y~~--~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~ 258 (388)
T PRK09561 197 --LN-------LC-------GVRRTSVYIL--VGVVLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPW 258 (388)
T ss_pred --HH-------Hc-------CCccchHHHH--HHHHHHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhh
Confidence 11 11 1222222222 3456788888999999999999999999631 136788899998
Q ss_pred HH-HHHHHH-HHHhccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHHhhH
Q 036333 367 RN-MFAALF-LASIGMLIHVHFLWNH-IDILLASVILVITIKTIIVFTVVKGF----------GYNNKTSVLVGMSLAQI 433 (527)
Q Consensus 367 ~~-~f~plF-F~~iGl~i~~~~l~~~-~~~~l~l~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~l~~r 433 (527)
.. +.+|+| |+..|..++-..+... ....+.+.+..+++|+++++..++.. +++|++-.-+|. ++..
T Consensus 259 v~~~IlPlFAfaNAGV~l~~~~~~~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~-L~GI 337 (388)
T PRK09561 259 VAFLILPLFAFANAGVSLQGVTLDGLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGV-LCGI 337 (388)
T ss_pred hhheeHHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHH
Confidence 76 589999 9999999843222211 13455666777889999998877653 567898888888 7888
Q ss_pred H-HHHHHHHHHHhhC--CCCcHHHHHHHHHHHHHhhhhhHHHHhh
Q 036333 434 G-EFAFVLLSRSSNL--HLVEGKLYLLLLGTTALSLVTTPLLFKL 475 (527)
Q Consensus 434 G-~~~lvl~~~a~~~--g~i~~~~~~~lv~~~~ls~l~~p~l~~~ 475 (527)
| ++++-+++.+.+. +...++.-.-++...+++.+++-.+.|.
T Consensus 338 GFTmSLFIa~LAF~~~~~~~~~~aKigIL~~S~~sai~g~~~l~~ 382 (388)
T PRK09561 338 GFTMSIFIASLAFGGVDPELINYAKLGILIGSLLSAVIGYSWLRK 382 (388)
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 8889899988852 2122333334444556666666655544
No 24
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.26 E-value=4.3e-09 Score=107.80 Aligned_cols=292 Identities=14% Similarity=0.163 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchHHH----HhhhH--HHHHHHHHHHHHHHHHHHHHH----HhcCChHHHHHHHHHHh
Q 036333 144 QVETVAQFGVIFLLFALGLEFSTTKLR----VVRAV--AVLGGLLQIFLFMFLCGITAL----LFGIKLSEGIFVGTFLS 213 (527)
Q Consensus 144 ~~~~l~~lgl~~llF~~Gle~d~~~lr----~~~~~--~~~~~~~~~~l~~~~~~~~~~----~lg~~~~~al~lg~~ls 213 (527)
..+-+.+.-+.++.|.+|+|++.+.+. +.+|. .+..++.+++.|.++-..+.. .-|+..+.+
T Consensus 56 l~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~~n~~~~~~~GW~IP~A-------- 127 (383)
T PRK14854 56 LMHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLSINHDIKVINGWAIPSA-------- 127 (383)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHhhccCCcccCccccccH--------
Confidence 345566677788999999999887543 22332 345677888888765443321 112322233
Q ss_pred hccHHHHHHHHhhcc-ccCCchhHHHHHHHHHhhHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036333 214 MSSTAVVLKFLMEKN-STNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRT 292 (527)
Q Consensus 214 ~TS~~vv~~~L~e~~-~~~s~~g~l~l~~s~l~D~~~~~l~al~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~ 292 (527)
|+.+....++.=.+ .......-.+++.+++||+.++++++++.. ++. +........++ ..+..+
T Consensus 128 -TDIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt----~~i-----~~~~L~~A~~~-~~~l~~---- 192 (383)
T PRK14854 128 -TDIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFYT----KSL-----SLLSLSLGTLF-ILAMII---- 192 (383)
T ss_pred -HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC----CCc-----cHHHHHHHHHH-HHHHHH----
Confidence 44444444443332 234445567888999999999887766431 111 11111111111 111111
Q ss_pred hHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcCCc-----chhhHHHhHHhHH
Q 036333 293 CVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTD-----LAQHTLEQIEPIR 367 (527)
Q Consensus 293 ~~~~l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~lg~s~~lgafvaGl~l~~~~-----~~~~l~~~l~~~~ 367 (527)
..|. . +.+....+. .+.+..++....-|+|+.++..+.|+++|..+ ..+++++.+++..
T Consensus 193 -~nr~----~---------~v~~~~~Y~--~~G~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v 256 (383)
T PRK14854 193 -CNRI----F---------KINRSSVYV--VLGFFAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWI 256 (383)
T ss_pred -HHHh----c---------CCceehHHH--HHHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchH
Confidence 1110 0 112222222 24456788888999999999999999999631 1367888888875
Q ss_pred -HHHHHHH-HHHhccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHHhhHH
Q 036333 368 -NMFAALF-LASIGMLIHVHFLWNH-IDILLASVILVITIKTIIVFTVVKGF----------GYNNKTSVLVGMSLAQIG 434 (527)
Q Consensus 368 -~~f~plF-F~~iGl~i~~~~l~~~-~~~~l~l~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~l~~rG 434 (527)
-+.+|+| |+..|..++-..+... ....+.+.+..+++|+++++..++.. +.+|++-.-+|+ ++..|
T Consensus 257 ~~~IlPlFA~aNAGV~l~~~~~~~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~-L~GIG 335 (383)
T PRK14854 257 IYFILPVFAFANAGISFSGISFSILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISL-LCGIG 335 (383)
T ss_pred HHhhHHHHHhhcCCeeeccCcHHhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHH
Confidence 5789999 9999999943222211 13455666777889999998877643 467898888888 78888
Q ss_pred -HHHHHHHHHHhhCCCCcHHHHHHHHHHHHHhhhhhHHHHhh
Q 036333 435 -EFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKL 475 (527)
Q Consensus 435 -~~~lvl~~~a~~~g~i~~~~~~~lv~~~~ls~l~~p~l~~~ 475 (527)
++++-+++.+.+.....++.-.-++...+++.+++-.+.|.
T Consensus 336 FTmSLFIa~LAF~~~~~~~~aKigIL~gS~~aai~G~~~l~~ 377 (383)
T PRK14854 336 FTMSLFIGVLAFNDTHLLNAIKIGVVVGSVLSGFFGYIVLRF 377 (383)
T ss_pred HHHHHHHHHhhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999998532233344444445566666666655543
No 25
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=99.09 E-value=6.4e-10 Score=114.11 Aligned_cols=290 Identities=18% Similarity=0.179 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchHHH----HhhhH--HHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhccH
Q 036333 144 QVETVAQFGVIFLLFALGLEFSTTKLR----VVRAV--AVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSST 217 (527)
Q Consensus 144 ~~~~l~~lgl~~llF~~Gle~d~~~lr----~~~~~--~~~~~~~~~~l~~~~~~~~~~~lg~~~~~al~lg~~ls~TS~ 217 (527)
..+-+.+--+.++.|.+|+|++.+.+. +.+|. ....++.+++.|.++-..+.. |.+ ...--+|.-. .|+.
T Consensus 55 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalIyl~~n~--~~~-~~~~GW~IP~-ATDI 130 (378)
T PF06965_consen 55 LHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALIYLAFNA--GGP-EAAHGWAIPM-ATDI 130 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGGG----SST-THHHHTSSSS----H
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHHHheeec--CCC-CcCceEEecc-cccH
Confidence 445666777788999999999887543 33332 345567777777654332211 111 0111111111 2666
Q ss_pred HHHHHHHhhccc-cCCchhHHHHHHHHHhhHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 036333 218 AVVLKFLMEKNS-TNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPW 296 (527)
Q Consensus 218 ~vv~~~L~e~~~-~~s~~g~l~l~~s~l~D~~~~~l~al~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~~~~~ 296 (527)
+....++.=.+. ........+++.+++||+.++++++++.. ++ .+........++ +++.+.+ +
T Consensus 131 AFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt----~~-----i~~~~L~~a~~~-~~~l~~l-----~- 194 (378)
T PF06965_consen 131 AFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT----DG-----ISLLWLLLAAAA-LLLLFVL-----N- 194 (378)
T ss_dssp HHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS--------------HHHHHHHHHH-HHHHHHH-----H-
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC----CC-----CCHHHHHHHHHH-HHHHHHH-----H-
Confidence 666666654432 33445678899999999999888776542 11 122222222111 1111111 1
Q ss_pred HHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcCCcch---------hhHHHhHHhHH
Q 036333 297 LLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLA---------QHTLEQIEPIR 367 (527)
Q Consensus 297 l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~lg~s~~lgafvaGl~l~~~~~~---------~~l~~~l~~~~ 367 (527)
|. +.+....+. .+.+..++....-|+|+.++..+.|+++|..+.. +++++.+++..
T Consensus 195 ------r~-------~v~~~~~Y~--~~G~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v 259 (378)
T PF06965_consen 195 ------RL-------GVRSLWPYL--LLGILLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWV 259 (378)
T ss_dssp ------HT-------T---THHHH--HHHHHHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHH
T ss_pred ------HC-------CCceehHHH--HHHHHHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhh
Confidence 11 112222222 2234567888889999999999999999965332 47788888886
Q ss_pred H-HHHHHH-HHHhccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHHhhHH
Q 036333 368 N-MFAALF-LASIGMLIHVHFLWNH-IDILLASVILVITIKTIIVFTVVKGF----------GYNNKTSVLVGMSLAQIG 434 (527)
Q Consensus 368 ~-~f~plF-F~~iGl~i~~~~l~~~-~~~~l~l~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~l~~rG 434 (527)
+ +.+|+| |+..|..++-..+... ....+.+++..+++|+++++..++.. ++++++-.-+|+ ++..|
T Consensus 260 ~~~IlPlFAlaNAGV~l~~~~~~~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~-LaGIG 338 (378)
T PF06965_consen 260 AFVILPLFALANAGVSLSGSSLGDLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGL-LAGIG 338 (378)
T ss_dssp HHTHHHHHHHHHS----SSS---THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHH-HTT--
T ss_pred hhhhHHhHhheeCceEEecCchHhhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHH
Confidence 5 669999 9999999986554322 23345556677789999998876643 456777777777 78888
Q ss_pred -HHHHHHHHHHhhCCCCcHHHHHHHHHHHHHhhhhh
Q 036333 435 -EFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTT 469 (527)
Q Consensus 435 -~~~lvl~~~a~~~g~i~~~~~~~lv~~~~ls~l~~ 469 (527)
++++-+++.+.+.....++.-.-++..++++.+.+
T Consensus 339 FTmSLFIa~LAF~~~~~~~~aK~gIL~~S~~aailG 374 (378)
T PF06965_consen 339 FTMSLFIAGLAFDDPALQNAAKLGILIGSLLAAILG 374 (378)
T ss_dssp HHHHHHHHHHHSTT-SSHHHHHHHHHHHHHTTSSTT
T ss_pred HHHHHHHHHHHcCChhhhhHHHHHHHHHHHHHHHHH
Confidence 89999999999875555555555555555555543
No 26
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.95 E-value=2.5e-07 Score=91.84 Aligned_cols=282 Identities=16% Similarity=0.149 Sum_probs=163.9
Q ss_pred HHHHHHHHhhcCCchHHH---HhhhH---HHHHHHHHHHHHHHHHHHHH-----HHhcCChHHHHHHHHHHhhccHHHHH
Q 036333 153 VIFLLFALGLEFSTTKLR---VVRAV---AVLGGLLQIFLFMFLCGITA-----LLFGIKLSEGIFVGTFLSMSSTAVVL 221 (527)
Q Consensus 153 l~~llF~~Gle~d~~~lr---~~~~~---~~~~~~~~~~l~~~~~~~~~-----~~lg~~~~~al~lg~~ls~TS~~vv~ 221 (527)
..++.+.+|+|++.+.+. +++++ ....++.+++.|..+-..+- ..-|+..+.+ |+.+...
T Consensus 71 MAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAliy~~~n~~~p~~~~GWaIP~A---------TDiAFAl 141 (390)
T COG3004 71 MAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALIYLALNAGDPATLEGWAIPMA---------TDIAFAL 141 (390)
T ss_pred HHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhHhheeecCChhhhcCcCcccH---------HHHHHHH
Confidence 346677899999988764 23333 23456677777765433221 1123333333 4444444
Q ss_pred HHHhhcc-ccCCchhHHHHHHHHHhhHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 036333 222 KFLMEKN-STNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPWLLKL 300 (527)
Q Consensus 222 ~~L~e~~-~~~s~~g~l~l~~s~l~D~~~~~l~al~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~~~~~l~~~ 300 (527)
.+++-++ ...+..--.+++.+++||+-+++++|++.. +. .+......... .+.+... +.|+
T Consensus 142 GvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt----~~-----Ls~~al~~a~~-~i~vL~~-----lN~~--- 203 (390)
T COG3004 142 GVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYT----TD-----LSMAALGIAAL-AIAVLAV-----LNRL--- 203 (390)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhc----CC-----ccHHHHHHHHH-HHHHHHH-----HHHh---
Confidence 4444332 234455568889999999998888776542 11 11111111111 1111111 1221
Q ss_pred HHhhhhccccccchhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcC-C----cchhhHHHhHHhHH-HHHHHHH
Q 036333 301 MTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMIST-T----DLAQHTLEQIEPIR-NMFAALF 374 (527)
Q Consensus 301 ~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~lg~s~~lgafvaGl~l~~-~----~~~~~l~~~l~~~~-~~f~plF 374 (527)
+.+....++ ......+..-..-|+|..++..+.|+++|- + +.-+++++.+++.. -+.+|+|
T Consensus 204 -----------~v~~l~~Y~--~~gviLW~~vlkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlF 270 (390)
T COG3004 204 -----------GVRRLSPYL--LVGVILWIAVLKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLF 270 (390)
T ss_pred -----------CchhhhHHH--HHHHHHHHHHHHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHH
Confidence 111111222 233345666678899999999999999993 2 23467777777765 4779999
Q ss_pred -HHHhccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHHhhHH-HHHHHHH
Q 036333 375 -LASIGMLIHVHFLWNH-IDILLASVILVITIKTIIVFTVVKGF----------GYNNKTSVLVGMSLAQIG-EFAFVLL 441 (527)
Q Consensus 375 -F~~iGl~i~~~~l~~~-~~~~l~l~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~l~~rG-~~~lvl~ 441 (527)
|+..|.++.--.+... ....+.+....+++|.++++..++.. +.+|++-..++. ++..| +.++-+.
T Consensus 271 aFaNAGvsl~g~~~~~l~s~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~i-LcGIGFTMSlFI~ 349 (390)
T COG3004 271 AFANAGVSLQGVSLSGLTSPLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSI-LCGIGFTMSLFIA 349 (390)
T ss_pred HHccCCcccccccccccccchHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHH-HHhhhHHHHHHHH
Confidence 9999998873222221 13345566677889999988877643 567888777777 78888 8888888
Q ss_pred HHHhhCC-CCcHHHHHHHHHHHHHhhhhhHHHHhh
Q 036333 442 SRSSNLH-LVEGKLYLLLLGTTALSLVTTPLLFKL 475 (527)
Q Consensus 442 ~~a~~~g-~i~~~~~~~lv~~~~ls~l~~p~l~~~ 475 (527)
+.+.+.. ..+...-.-++.....|.+.+-...|.
T Consensus 350 ~LAf~~~~~~~~~~klgIL~gS~~Sai~G~~~L~~ 384 (390)
T COG3004 350 SLAFGSEDELQTAAKLGILVGSFISAILGYSYLRL 384 (390)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887643 222222223334445555555544443
No 27
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=98.59 E-value=7.3e-08 Score=102.69 Aligned_cols=359 Identities=15% Similarity=0.182 Sum_probs=211.4
Q ss_pred HHHHHHHHHHHHHHHH---hcC--CchHHHHHHHHHHhCCCCCcCCCc-hHHHHH--HHHHHHHHHHHHHhhcCCchHHH
Q 036333 99 LVVVIVFATCGGIAFA---CAG--QPVITGYLLAGSIIGPGGFNFVSE-MVQVET--VAQFGVIFLLFALGLEFSTTKLR 170 (527)
Q Consensus 99 l~lil~~a~~~~~l~~---rl~--lP~iig~IlaGilLGPs~L~~i~~-~~~~~~--l~~lgl~~llF~~Gle~d~~~lr 170 (527)
+.+.++++.++...+. +++ +|.-...|+.|+++|-...+.-.. ..+++. +--.-+--+++.+|.-|.-+.+.
T Consensus 44 i~lwil~asLaKi~fh~~~~l~~i~PES~lLI~~Gl~lG~ii~~~~~~~~~~L~s~vFFlyLLPPIvlDAGYfMp~r~Ff 123 (670)
T KOG1966|consen 44 ITLWILVASLAKIVFHLMPKLRKIVPESCLLIILGLVLGGIIKALATIAPFFLESDVFFLYLLPPIVLDAGYFMPNRAFF 123 (670)
T ss_pred hHHHHHHHHHHHhcccccccccccCchhHHHHHHHHHHHHHHHhhhccccccccccchhhhhcCHHHhcccccCccHHHH
Confidence 4444444444444433 222 677778888898888533221111 122322 22222334789999999999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHH------Hhc--CChHHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHH
Q 036333 171 VVRAVAVLGGLLQIFLFMFLCGITAL------LFG--IKLSEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTL 242 (527)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~------~lg--~~~~~al~lg~~ls~TS~~vv~~~L~e~~~~~s~~g~l~l~~s 242 (527)
.+...++..+++|.+.-++..+...| .+| .++..-++.|+..|..+|..+..+.+|... |.-.=-++.|++
T Consensus 124 ~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEihV-Ne~LfI~VFGES 202 (670)
T KOG1966|consen 124 ENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIHV-NEVLFIIVFGES 202 (670)
T ss_pred hccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhcc-ccEEEeeeehhh
Confidence 99999999999888775444443222 335 347788999999999999999999999864 433335778999
Q ss_pred HHhhHHHHHHHHHHHHHh--cCCCc-----chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhccccccchh
Q 036333 243 ILQDCAVGLLFALLPVLG--GTSGV-----LQGMISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNE 315 (527)
Q Consensus 243 ~l~D~~~~~l~al~~~l~--~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~e 315 (527)
++||.+.++++-.+..+. ++... ..+..++.-+.+.. ++++++...+.....|+.. ..+-
T Consensus 203 LlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG----~lvGivfafl~sl~tkft~---------~vrv 269 (670)
T KOG1966|consen 203 LLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGG----ALVGIVFAFLASLVTKFTK---------HVRV 269 (670)
T ss_pred hhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCc----hhHHHHHHHHHHHHHHhhc---------ceee
Confidence 999998888775543332 11110 01111111111111 1111222222222222222 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcCC---cchhhHHHhHHh----HHHHHHHHHHHHhccccchhhhh
Q 036333 316 LYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTT---DLAQHTLEQIEP----IRNMFAALFLASIGMLIHVHFLW 388 (527)
Q Consensus 316 ~~~~~~l~~~l~~~~~ae~lg~s~~lgafvaGl~l~~~---~~~~~l~~~l~~----~~~~f~plFF~~iGl~i~~~~l~ 388 (527)
...++++.+...+|..+|.+|+|++++..+.|+.+... ...++....+.. .+..--++-|.+.|.++--. +
T Consensus 270 iePvfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~--~ 347 (670)
T KOG1966|consen 270 LEPVFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS--N 347 (670)
T ss_pred ecchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC--c
Confidence 33456778899999999999999999999999999842 222222222222 23455666777888876322 3
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHhhc------CCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCCcH------HH
Q 036333 389 NHIDIL--LASVILVITIKTIIVFTVVKGF------GYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEG------KL 454 (527)
Q Consensus 389 ~~~~~~--l~l~~~~~~~K~~~~~l~~~~~------~~~~~~~~~lgl~l~~rG~~~lvl~~~a~~~g~i~~------~~ 454 (527)
.+|... ..-++...+.|.+++..-+++. +++..|.+.++.+ +-||.+++.+--. .+...++. .+
T Consensus 348 h~wd~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~LV~l-id~~~vp~K~~Fvttt 425 (670)
T KOG1966|consen 348 HHWDFAFICLTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGLVVL-IDGAKVPAKNMFVTTT 425 (670)
T ss_pred ceeehhhhhhHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeEEEE-eccccCCcccceEeee
Confidence 445432 3334555677999888777764 3577888888885 8888777655322 22122222 23
Q ss_pred HHHHHHHHHHhhhhh-HHHHhh
Q 036333 455 YLLLLGTTALSLVTT-PLLFKL 475 (527)
Q Consensus 455 ~~~lv~~~~ls~l~~-p~l~~~ 475 (527)
+.++..|+.+.+++. |++..+
T Consensus 426 i~VIfFTVflQGiTIkplvk~L 447 (670)
T KOG1966|consen 426 IAVIFFTVFLQGITIKPLVKFL 447 (670)
T ss_pred eEEEeeeeeecccchHHHHHHH
Confidence 333345666666665 555444
No 28
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=98.27 E-value=0.0044 Score=65.18 Aligned_cols=304 Identities=15% Similarity=0.112 Sum_probs=150.8
Q ss_pred CCchHHHHHHHHHHhCCCCCcCC--C-chHHHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 036333 117 GQPVITGYLLAGSIIGPGGFNFV--S-EMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMFLCGI 193 (527)
Q Consensus 117 ~lP~iig~IlaGilLGPs~L~~i--~-~~~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~~~~~~~~~l~~~~~~~ 193 (527)
.+|+++-.++.|+++...+ .+ + +.+..+.+.+..+-+-++..=++.|+++++|.+++.+..=+++.+. .++++.
T Consensus 24 ~l~~~vl~~~~~~~lsnlg--li~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g-~viG~~ 100 (378)
T PF05684_consen 24 YLPGAVLCYLLGMLLSNLG--LIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVG-TVIGAV 100 (378)
T ss_pred hcCHHHHHHHHHHHHHHCC--CcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHH-HHHHHH
Confidence 5889999999999999744 55 2 3456788888888887788878899999999888866543433332 334444
Q ss_pred HHH-HhcCC-hHHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHH-HhhHHHHHHHHHHHHHhcCCCcchhHH
Q 036333 194 TAL-LFGIK-LSEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLI-LQDCAVGLLFALLPVLGGTSGVLQGMI 270 (527)
Q Consensus 194 ~~~-~lg~~-~~~al~lg~~ls~TS~~vv~~~L~e~~~~~s~~g~l~l~~s~-l~D~~~~~l~al~~~l~~~~~~~~~~~ 270 (527)
+++ +++.. -.+.-=++.+++.|-..=......-...++.+ +-..+.++ .|.+..-+.+.++..+.....
T Consensus 101 va~~l~~~~l~~~~wk~ag~l~gsyiGGs~N~~Av~~al~~~--~~~~~a~~aaDnv~~~~~~~~l~~l~~~~~------ 172 (378)
T PF05684_consen 101 VAFLLFGGFLGPEGWKIAGMLAGSYIGGSVNFVAVAEALGVS--DSLFAAALAADNVVMALWFAFLLALPPFAR------ 172 (378)
T ss_pred HHHHHHhhcccchHHHHHHHHHhcccCchhHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhH------
Confidence 433 22221 12233333333333222111111111112211 22334344 444433333333222211000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH------HHHHHhhhhccccccchhHHHHHHHHHHHHHHHH----HHHh-----
Q 036333 271 SITKLLVVLIAFLGILSILSRTCVPWL------LKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWC----SDKL----- 335 (527)
Q Consensus 271 ~~~~~~l~~~~~~~~~~~v~r~~~~~l------~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~----ae~l----- 335 (527)
...|+..+.- .+...+...+.+.++.. ......+++.+....+ ++.+
T Consensus 173 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~la~a~~v~~~s~~la~~l~~~~~ 234 (378)
T PF05684_consen 173 -----------------KFDRWTKADTSSIEALEEEIEAEEAEWARKPIS-QDLAFLLAVAFAVVALSHALAAWLPPLFA 234 (378)
T ss_pred -----------------HhhhccCCCccccchhhhhhhhhhhccccCCcH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000000000 00000000000000110 1112222333322222 2222
Q ss_pred Ch----hHHHHHHHHHHHhcCCcchhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036333 336 GL----SLELGSFAAGVMISTTDLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFT 411 (527)
Q Consensus 336 g~----s~~lgafvaGl~l~~~~~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l 411 (527)
+. -.++-....|++.+-.+..+.+ ..-+++..+++=+||+.+|++.|+..+.+ .+..+...++.+.+-.+..+.
T Consensus 235 ~~~~~~~~il~~tt~~l~~~~~~~~~~l-~g~~~lg~~lly~ffa~IGa~a~i~~l~~-ap~~~l~~~i~l~iH~~l~l~ 312 (378)
T PF05684_consen 235 GISSSTWLILTVTTLGLATSFPPFRKLL-RGASELGTFLLYLFFAVIGASADISELLD-APSLFLFGFIILAIHLLLMLI 312 (378)
T ss_pred hccccHHHHHHHHHHHHHHhccchhhcC-CchHHHHHHHHHHHHHHHccccCHHHHHH-hHHHHHHHHHHHHHHHHHHHH
Confidence 10 1223334455555544544443 55667788999999999999999998877 444444555666788888889
Q ss_pred HHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCCcH
Q 036333 412 VVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEG 452 (527)
Q Consensus 412 ~~~~~~~~~~~~~~lgl~l~~rG~~~lvl~~~a~~~g~i~~ 452 (527)
..+++|.|..+...-+- =|.-|-.+-.....+++..+...
T Consensus 313 ~~kl~k~~l~~~~vAS~-AnIGGpaTA~a~A~a~~~~Lv~p 352 (378)
T PF05684_consen 313 LGKLFKIDLFELLVASN-ANIGGPATAPAVAAAKGPSLVPP 352 (378)
T ss_pred HHHHHCCCHHHHHHHhh-cccCCcchHHHHHHhcCCccHHH
Confidence 99999999887665554 24444444333344444444433
No 29
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=97.79 E-value=0.0088 Score=60.50 Aligned_cols=279 Identities=14% Similarity=0.136 Sum_probs=148.3
Q ss_pred HHHHHHHHHHhC---CCCCcCCCch-HHHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036333 121 ITGYLLAGSIIG---PGGFNFVSEM-VQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMFLCGITAL 196 (527)
Q Consensus 121 iig~IlaGilLG---Ps~L~~i~~~-~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (527)
++-.++.|.++. |..+.+=.-. ..++.=+.--+..++|..|-++|++...+..|+...+-+.=+.+...++.+++.
T Consensus 15 m~vPl~lga~inTf~P~~l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~ 94 (312)
T PRK12460 15 MVVPLLIGALINTFFPQALEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGK 94 (312)
T ss_pred eHHHHHHHHHHHhccCcchhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 345566777665 3333221111 112211122445688999999999987777777666655566666666666667
Q ss_pred HhcCCh---HHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHHHhhHHHHHHHHHHHHHhcCCCcchhHHHHH
Q 036333 197 LFGIKL---SEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMISIT 273 (527)
Q Consensus 197 ~lg~~~---~~al~lg~~ls~TS~~vv~~~L~e~~~~~s~~g~l~l~~s~l~D~~~~~l~al~~~l~~~~~~~~~~~~~~ 273 (527)
++|.+- ...+.+-++++.|--..=..+..|++.. .|.-+..+.++ .+++ ..++
T Consensus 95 ~~g~~g~~Gls~laiiaa~~~~Ng~ly~al~~~yG~~--------------~d~gA~~~~sl------~~GP---f~tm- 150 (312)
T PRK12460 95 FFGAEGIFGLSGLAIVAAMSNSNGGLYAALMGEFGDE--------------RDVGAISILSL------NDGP---FFTM- 150 (312)
T ss_pred HcCcccccchHHHHHHHHHhcCcHHHHHHHHHHcCCH--------------hhhhHHhhhhh------ccCc---HHHH-
Confidence 776431 2333344444555555555555665421 13222222211 1121 1110
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcCC
Q 036333 274 KLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTT 353 (527)
Q Consensus 274 ~~~l~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~lg~s~~lgafvaGl~l~~~ 353 (527)
+++. ...+ .+. +.. .+-+.+=+++.|+++.|.
T Consensus 151 ------~aLg--a~gL------------A~i-------p~~---------------------~lv~lilpILiGmilGNl 182 (312)
T PRK12460 151 ------LALG--AAGL------------ANI-------PIM---------------------ALVAALLPLVLGMILGNL 182 (312)
T ss_pred ------HHHH--HHHH------------hcC-------ChH---------------------HHHHHHHHHHHHHHHhcc
Confidence 0000 0000 110 000 011133456778888874
Q ss_pred cchhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH--HHHh
Q 036333 354 DLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKGFGYNNKTSVLVG--MSLA 431 (527)
Q Consensus 354 ~~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~~~~~~~~~~~~lg--l~l~ 431 (527)
+. +..+.+++=..+..|+|-...|+++|++.+.+.....+++.+.+++.-....++..|++|.+.+.++.+| .+-+
T Consensus 183 d~--~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnA 260 (312)
T PRK12460 183 DP--DMRKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNA 260 (312)
T ss_pred ch--hhHHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHH
Confidence 32 3455666655678999989999999999987665444444444445556666666688898888887777 4433
Q ss_pred hHHHHHHHHHHHHhhCCCCcHHHHHHHHH-HHHHhhhhhHHHHhhh
Q 036333 432 QIGEFAFVLLSRSSNLHLVEGKLYLLLLG-TTALSLVTTPLLFKLI 476 (527)
Q Consensus 432 ~rG~~~lvl~~~a~~~g~i~~~~~~~lv~-~~~ls~l~~p~l~~~~ 476 (527)
.-|-..++... ...... .+.-+..+. ++++|.++.|++..++
T Consensus 261 IcgpAAVaAad--P~~~~~-~~~Ataqvaa~vivTail~P~~t~~~ 303 (312)
T PRK12460 261 VATPLAIAAAD--PSLAPV-AAAATAQVAASVIVTAILTPLLTSWV 303 (312)
T ss_pred HHHHHHHHHhc--hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322222221 111112 233333443 4677999999998886
No 30
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.73 E-value=0.048 Score=55.56 Aligned_cols=109 Identities=18% Similarity=0.212 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhccHHHH
Q 036333 144 QVETVAQFGVIFLLFALGLEFSTTKLRVVR---AVAVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSSTAVV 220 (527)
Q Consensus 144 ~~~~l~~lgl~~llF~~Gle~d~~~lr~~~---~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~al~lg~~ls~TS~~vv 220 (527)
.++..-.+.+.+++|..|+.++.+++++.. |..+.+...++.+.=.++..+...+. ...-+..|..+..+.|.-+
T Consensus 35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~--l~~~l~~Gl~ll~~~Pggv 112 (319)
T COG0385 35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP--LPPELAVGLLLLGCCPGGV 112 (319)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHhHHheeeCCCch
Confidence 444455788999999999999999988654 44444444444443344444455544 4455666666654443333
Q ss_pred HHHHhhccccCCchhHHHHHHHHHhhHHHHHHHHHH
Q 036333 221 LKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALL 256 (527)
Q Consensus 221 ~~~L~e~~~~~s~~g~l~l~~s~l~D~~~~~l~al~ 256 (527)
.....-. +.+.+. -..++.+.++.+.+.++.-+.
T Consensus 113 ~S~~~t~-lAkGnV-alsV~~tsvStll~~f~tPll 146 (319)
T COG0385 113 ASNAMTY-LAKGNV-ALSVCSTSVSTLLGPFLTPLL 146 (319)
T ss_pred hHHHHHH-HhcCcH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3322222 223333 245555556676666554333
No 31
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=97.60 E-value=0.12 Score=53.40 Aligned_cols=97 Identities=14% Similarity=0.155 Sum_probs=70.8
Q ss_pred HhcCCchHHHHHHHHHHhCCCCCcCCCc--hH----HHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHHHHHHHHHHHH
Q 036333 114 ACAGQPVITGYLLAGSIIGPGGFNFVSE--MV----QVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLF 187 (527)
Q Consensus 114 ~rl~lP~iig~IlaGilLGPs~L~~i~~--~~----~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~~~~~~~~~l~ 187 (527)
+..+++.++--++.|+++|+......++ .. .-+.+-++|+++ .|.+++++++.+.+.+.+...+..+..+
T Consensus 27 ~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVL----lG~~l~~~~i~~~G~~~l~~~~~~v~~~ 102 (335)
T TIGR00698 27 ADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITL----YGFRLTFPYIADVGPNEIVADTLILTST 102 (335)
T ss_pred ccCCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHH----HCccccHHHHHHhhHHHHHHHHHHHHHH
Confidence 3468999999999999999854211111 11 224566677665 4999999999999998888777777777
Q ss_pred HHHHHHHH-HHhcCChHHHHHHHHHHhh
Q 036333 188 MFLCGITA-LLFGIKLSEGIFVGTFLSM 214 (527)
Q Consensus 188 ~~~~~~~~-~~lg~~~~~al~lg~~ls~ 214 (527)
+.++.+++ ..+|.+...+.++++--|.
T Consensus 103 ~~~~~~~g~k~l~l~~~~~~Lia~GtsI 130 (335)
T TIGR00698 103 FFLTVFLGSSRLKLDKQMSILLGAGSSI 130 (335)
T ss_pred HHHHHHHHHHHhCCChhHHHHHHcchhH
Confidence 77767776 5889888888888776655
No 32
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=97.51 E-value=0.082 Score=54.03 Aligned_cols=98 Identities=18% Similarity=0.288 Sum_probs=74.1
Q ss_pred hcCCchHHHHHHHHHHhCCCCCcCCCc----hH-HHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHHHHHHHHHHHHHH
Q 036333 115 CAGQPVITGYLLAGSIIGPGGFNFVSE----MV-QVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMF 189 (527)
Q Consensus 115 rl~lP~iig~IlaGilLGPs~L~~i~~----~~-~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~~~~~~~~~l~~~ 189 (527)
..+++.++--++.|+++|+...+..+. .. .-+.+-++|+++ .|.+++++++.+.+...+....+.+..++.
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVL----lG~~l~~~~i~~~G~~~~~~~~~~v~~~~~ 98 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVL----LGFRLSFSDILALGWKGLLIIIIVVILTFL 98 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHH----HCccccHHHHHHhCccHHHHHHHHHHHHHH
Confidence 468899999999999999733333221 11 124566667665 499999999999999888888888888888
Q ss_pred HHHHHH-HHhcCChHHHHHHHHHHhhcc
Q 036333 190 LCGITA-LLFGIKLSEGIFVGTFLSMSS 216 (527)
Q Consensus 190 ~~~~~~-~~lg~~~~~al~lg~~ls~TS 216 (527)
++.+++ ..+|.+...+.++++-.|...
T Consensus 99 ~~~~lg~r~~~l~~~~~~Lia~GtsICG 126 (305)
T PF03601_consen 99 LTYWLGRRLFGLDRKLAILIAAGTSICG 126 (305)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhhcccch
Confidence 888787 889999999999887776633
No 33
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.24 E-value=0.098 Score=52.87 Aligned_cols=283 Identities=13% Similarity=0.151 Sum_probs=144.3
Q ss_pred hHHHHHHHHHHhC---CCCCcCCCchH-HHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 036333 120 VITGYLLAGSIIG---PGGFNFVSEMV-QVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMFLCGITA 195 (527)
Q Consensus 120 ~iig~IlaGilLG---Ps~L~~i~~~~-~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (527)
.++-.++.|.++. |..+..+.+.. -+-+=+.--+.+++|..|-++|++...+..|+-..+-+.-+.+...++.++.
T Consensus 14 ~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~ 93 (314)
T PF03812_consen 14 MMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVG 93 (314)
T ss_pred eeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3455666777765 33333222211 1111123445678999999999999988888877777777777766666667
Q ss_pred HHhcCC-------h-HHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHHHhhHHHHHHHHHHHHHhcCCCcch
Q 036333 196 LLFGIK-------L-SEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQ 267 (527)
Q Consensus 196 ~~lg~~-------~-~~al~lg~~ls~TS~~vv~~~L~e~~~~~s~~g~l~l~~s~l~D~~~~~l~al~~~l~~~~~~~~ 267 (527)
.++|.+ + ..++.+-++++.+-...=..+..|++.. +|. -+.+...++|.-.+.++++-.
T Consensus 94 ~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~-~D~--gA~~i~sl~~GPf~tMl~LG~---------- 160 (314)
T PF03812_consen 94 KFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDE-EDV--GAFSILSLNDGPFFTMLALGA---------- 160 (314)
T ss_pred HHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCH-HHh--HHHHHHHhhhhHHHHHHHHhh----------
Confidence 777643 1 2344555556667777777777776532 222 122222233321111111100
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHH
Q 036333 268 GMISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAG 347 (527)
Q Consensus 268 ~~~~~~~~~l~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~lg~s~~lgafvaG 347 (527)
-+-.-.+|. .+ =+.+=+++.|
T Consensus 161 ---------------------sG~a~ip~~--------------------~l------------------v~~llP~iiG 181 (314)
T PF03812_consen 161 ---------------------SGLANIPWM--------------------SL------------------VAALLPIIIG 181 (314)
T ss_pred ---------------------ccccCCCHH--------------------HH------------------HHHHHHHHHH
Confidence 000000110 00 0123356677
Q ss_pred HHhcCCcchhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCChHHHHHH
Q 036333 348 VMISTTDLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKGF-GYNNKTSVLV 426 (527)
Q Consensus 348 l~l~~~~~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~~~-~~~~~~~~~l 426 (527)
+++.|- .+++.+.+.+-...+.|+|-...|..+|++.+.+.....+++-+..++.--...++.-++. |-+..-.+..
T Consensus 182 ~iLGNL--D~~~r~fl~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~~~~dr~i~~~~g~aG~A~ 259 (314)
T PF03812_consen 182 MILGNL--DPDFRKFLAPGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPLYLADRLILKGNGVAGAAI 259 (314)
T ss_pred HHHhcC--CHHHHHHHhcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHHHcCCCCceeehH
Confidence 777764 3456667777778999999889999999998876433222222222222233344444542 3332222222
Q ss_pred HHHHhhHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHhhhhhHHHHhhh
Q 036333 427 GMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKLI 476 (527)
Q Consensus 427 gl~l~~rG~~~lvl~~~a~~~g~i~~~~~~~lv~~~~ls~l~~p~l~~~~ 476 (527)
+-.-+.-=.+..+++..-.+.....+..-..+-.++++|.+++|++..++
T Consensus 260 sstAGnavatPaaiA~~dP~~~~~~~~ATaQvAaavIvTail~P~lt~~~ 309 (314)
T PF03812_consen 260 SSTAGNAVATPAAIAAADPSFAPYAASATAQVAAAVIVTAILTPILTSWW 309 (314)
T ss_pred HhhhhhhhhhhHHHHHhChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21100000122233332222222222222223345677999999999886
No 34
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.19 E-value=0.41 Score=50.37 Aligned_cols=93 Identities=18% Similarity=0.244 Sum_probs=57.2
Q ss_pred ChhHHHHHHHHHHHhcCC----cchhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHHHHHHHH-HHHHHHHHHHHHHH
Q 036333 336 GLSLELGSFAAGVMISTT----DLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLA-SVILVITIKTIIVF 410 (527)
Q Consensus 336 g~s~~lgafvaGl~l~~~----~~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~~~~l~-l~~~~~~~K~~~~~ 410 (527)
.++...+|++.|+++.+. +..+--.+.++.+.++.+-+|-++.=+.+++..+.+.....++ +++-.++.=+.+.+
T Consensus 246 ~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a~Plliil~~q~i~~~~f~~f 325 (368)
T PF03616_consen 246 TLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYALPLLIILAVQTILMVLFAYF 325 (368)
T ss_pred CCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999863 1111112245556677777776666667787777766544433 33333334445566
Q ss_pred HHHhhcCCChHHHHHHHHH
Q 036333 411 TVVKGFGYNNKTSVLVGMS 429 (527)
Q Consensus 411 l~~~~~~~~~~~~~~lgl~ 429 (527)
+..|.+|.++ |+..++.+
T Consensus 326 v~fr~~gkdy-daavm~~G 343 (368)
T PF03616_consen 326 VTFRVMGKDY-DAAVMSAG 343 (368)
T ss_pred HhhhhhCCCh-hHHHHhhh
Confidence 6677888774 77666554
No 35
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.06 E-value=0.034 Score=62.53 Aligned_cols=130 Identities=14% Similarity=0.140 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCcCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHHHHHHH
Q 036333 103 IVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLL 182 (527)
Q Consensus 103 l~~a~~~~~l~~rl~lP~iig~IlaGilLGPs~L~~i~~~~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~~~~~~ 182 (527)
+++.....+++..+|++..+|-.++|++++.+-... .-...++.+..+-+.+++..+|+.+|+..+...+...+...+.
T Consensus 225 l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~~~~~~-~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~ 303 (621)
T PRK03562 225 LFLVFGFGLLMEEVGLSMALGAFLAGVLLASSEYRH-ALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLG 303 (621)
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHhcCCccHH-HHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHH
Confidence 344455667889999999999999999999642211 0122466677777788888999999999887665554433333
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcc-HH-HHHHHHhhccccCCc
Q 036333 183 QIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSS-TA-VVLKFLMEKNSTNAL 233 (527)
Q Consensus 183 ~~~l~~~~~~~~~~~lg~~~~~al~lg~~ls~TS-~~-vv~~~L~e~~~~~s~ 233 (527)
.++.=++.+...+.+.|.++..++.+|..++.-. ++ ++.....+.+.++.+
T Consensus 304 ~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~ 356 (621)
T PRK03562 304 FLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPE 356 (621)
T ss_pred HHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHH
Confidence 3333334445556778999999999999888632 22 233344444444433
No 36
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.03 E-value=0.038 Score=61.92 Aligned_cols=112 Identities=13% Similarity=0.226 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCcCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHHHHHHHH
Q 036333 104 VFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQ 183 (527)
Q Consensus 104 ~~a~~~~~l~~rl~lP~iig~IlaGilLGPs~L~~i~~~~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~~~~~~~ 183 (527)
++.....++++.+|+...+|-.++|++++.+-... .-...++.+.++-+.++...+|+.+|++.+...+...+.+.+..
T Consensus 223 ~~vl~~a~l~~~~Gls~~LGAFlaGl~l~~s~~~~-~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~ 301 (601)
T PRK03659 223 LLVLGSALFMDALGLSMALGTFIAGVLLAESEYRH-ELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVL 301 (601)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHhcCCchHH-HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHH
Confidence 34455567888999999999999999999642210 01224677778888889999999999998887765544443333
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcc
Q 036333 184 IFLFMFLCGITALLFGIKLSEGIFVGTFLSMSS 216 (527)
Q Consensus 184 ~~l~~~~~~~~~~~lg~~~~~al~lg~~ls~TS 216 (527)
++.=++.+.....+.|.++..++.+|..++...
T Consensus 302 l~~K~~~~~~~~~~~g~~~~~al~~g~~L~~~G 334 (601)
T PRK03659 302 VAVKGLVLYLLARLYGLRSSERMQFAGVLSQGG 334 (601)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhccc
Confidence 333334444556678999999999998887643
No 37
>COG2855 Predicted membrane protein [Function unknown]
Probab=97.02 E-value=0.5 Score=48.39 Aligned_cols=100 Identities=14% Similarity=0.195 Sum_probs=75.6
Q ss_pred HhcCCchHHHHHHHHHHhCCCCCcCCCch----HHHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHHHHHHHHHHHHHH
Q 036333 114 ACAGQPVITGYLLAGSIIGPGGFNFVSEM----VQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMF 189 (527)
Q Consensus 114 ~rl~lP~iig~IlaGilLGPs~L~~i~~~----~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~~~~~~~~~l~~~ 189 (527)
...++|..+--|+.|+++|...-..-+.. ..-+.+-++|++++ |.+++++.+.+.+...+.+....+..+++
T Consensus 33 ~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLl----G~~ltl~~i~~~G~~~v~~~~~~l~~t~~ 108 (334)
T COG2855 33 IHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLL----GFRLTLSDIADVGGSGVLIIAITLSSTFL 108 (334)
T ss_pred hhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHH----cceeeHHHHHHcCccHHHHHHHHHHHHHH
Confidence 34789999999999999994221110111 12355667777664 89999999999999988888888888888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhccH
Q 036333 190 LCGITALLFGIKLSEGIFVGTFLSMSST 217 (527)
Q Consensus 190 ~~~~~~~~lg~~~~~al~lg~~ls~TS~ 217 (527)
.+.+++.++|.++..++++|+--|..-.
T Consensus 109 ~~~~lg~~lgld~~~a~Lia~GssICGa 136 (334)
T COG2855 109 FAYFLGKLLGLDKKLALLIAAGSSICGA 136 (334)
T ss_pred HHHHHHHHhCCCHHHHHHHHccchhhHH
Confidence 8888888999999999999887766433
No 38
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=97.01 E-value=0.64 Score=49.36 Aligned_cols=94 Identities=15% Similarity=0.170 Sum_probs=62.9
Q ss_pred hChhHHHHHHHHHHHhcCC----cchhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHH-HHHH
Q 036333 335 LGLSLELGSFAAGVMISTT----DLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIK-TIIV 409 (527)
Q Consensus 335 lg~s~~lgafvaGl~l~~~----~~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K-~~~~ 409 (527)
..++...+|++.|+++++. +..+...+.++.+.++.+-+|.+..=+.+++..+.+.+..+++++++-++.- ....
T Consensus 243 ~~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~Plliil~~q~i~~~l~~~ 322 (398)
T TIGR00210 243 LMLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGPIALILLVQVMFMALYAI 322 (398)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999964 1122223456667788888887777788888888777655554444443333 3455
Q ss_pred HHHHhhcCCChHHHHHHHHH
Q 036333 410 FTVVKGFGYNNKTSVLVGMS 429 (527)
Q Consensus 410 ~l~~~~~~~~~~~~~~lgl~ 429 (527)
++..+.+|.+ .|+..++.+
T Consensus 323 fv~fr~mg~~-ydaaV~~ag 341 (398)
T TIGR00210 323 FVTFRLMGKD-YDAAVLCAG 341 (398)
T ss_pred HHhHHhccch-HHHHHHhcc
Confidence 6666777766 888775443
No 39
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=97.01 E-value=0.043 Score=55.03 Aligned_cols=125 Identities=20% Similarity=0.322 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhChhHHHHHHHHHHHhcCCcch-hhHHHhHHhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHH
Q 036333 325 CLLVAWCSDKLGLSLELGSFAAGVMISTTDLA-QHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVIT 403 (527)
Q Consensus 325 ~l~~~~~ae~lg~s~~lgafvaGl~l~~~~~~-~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~ 403 (527)
+.....+++.++++..++-.++|++++..-.+ -+-.+.++.+.++-..++....|+++|++.+.+++.....+....++
T Consensus 4 a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~~ 83 (273)
T TIGR00932 4 AVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQVL 83 (273)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999854221 01123566777788888888999999999988766444333333333
Q ss_pred HH-HHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCCc
Q 036333 404 IK-TIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVE 451 (527)
Q Consensus 404 ~K-~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~~~lvl~~~a~~~g~i~ 451 (527)
.= +...+...++.+.++.+++.+|..+++-.. -+....-.+.+..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~--~v~~~il~~~~~~~ 130 (273)
T TIGR00932 84 VPGVLLGLLLGHLLGLALGAAVVIGIILALSST--AVVVQVLKERGLLK 130 (273)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHH--HHHHHHHHHcCccc
Confidence 33 444445567788999999999987775542 23333444545433
No 40
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=96.92 E-value=0.23 Score=51.67 Aligned_cols=105 Identities=22% Similarity=0.245 Sum_probs=65.9
Q ss_pred HHHHHHH-HHHHHHHhC-----hhHHHHHHHHHHHhcCC----cchhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHH
Q 036333 321 SVAFCLL-VAWCSDKLG-----LSLELGSFAAGVMISTT----DLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNH 390 (527)
Q Consensus 321 ~l~~~l~-~~~~ae~lg-----~s~~lgafvaGl~l~~~----~~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~ 390 (527)
.+++|++ .+++.++++ ++...+|++.|+++++. ...+-..+.++.+.+.-+.+|.+..=|++.+..+.+.
T Consensus 226 ~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~l 305 (404)
T COG0786 226 IIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELADL 305 (404)
T ss_pred HHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 3444443 445555554 67889999999999975 1222234566777888888887777777777666554
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHhhcCCChHHHHH
Q 036333 391 IDI-LLASVILVITIKTIIVFTVVKGFGYNNKTSVL 425 (527)
Q Consensus 391 ~~~-~l~l~~~~~~~K~~~~~l~~~~~~~~~~~~~~ 425 (527)
+.. ++++.+-.++.-+.+.+...|..|.+...+..
T Consensus 306 ~lpl~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~ 341 (404)
T COG0786 306 ALPLLVILAVQTIVMALFAIFVTFRLMGKNYDAAVL 341 (404)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 432 33333334444566667777888877665544
No 41
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.85 E-value=0.71 Score=47.45 Aligned_cols=110 Identities=19% Similarity=0.259 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCchHHHHhhh---HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhccHHHHH
Q 036333 145 VETVAQFGVIFLLFALGLEFSTTKLRVVRA---VAVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSSTAVVL 221 (527)
Q Consensus 145 ~~~l~~lgl~~llF~~Gle~d~~~lr~~~~---~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~al~lg~~ls~TS~~vv~ 221 (527)
.|....+++..++|..|+.++.+++++..| .....-...++++=+++..+..+.+......+..|..+...-|..+.
T Consensus 29 ~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~ 108 (313)
T PF13593_consen 29 PEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFLPPELALGLLILACLPTTVS 108 (313)
T ss_pred hhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHhhCCchhh
Confidence 356777888899999999999999987443 33332222222222333334444432122334455444332222211
Q ss_pred -HHHhhccccCCchhHHHHHHHHHhhHHHHHHHHHH
Q 036333 222 -KFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALL 256 (527)
Q Consensus 222 -~~L~e~~~~~s~~g~l~l~~s~l~D~~~~~l~al~ 256 (527)
.+..-+ ..+.+. ..++..+.++.+++.++.-+.
T Consensus 109 S~v~~T~-~AgGN~-a~Al~~~~~snllgv~ltP~l 142 (313)
T PF13593_consen 109 SSVVLTR-LAGGNV-ALALFNAVLSNLLGVFLTPLL 142 (313)
T ss_pred HHHHHHH-HcCCCH-HHHHHHHHHHhhhhHhHHHHH
Confidence 111111 223333 366667777888777665433
No 42
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=96.54 E-value=0.024 Score=53.85 Aligned_cols=124 Identities=19% Similarity=0.295 Sum_probs=84.3
Q ss_pred HHHHHHHHHhCCCCCcCCCchHHHHHHHHHHHHHHHHHHhhcCCch-----HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036333 122 TGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTT-----KLRVVRAVAVLGGLLQIFLFMFLCGITAL 196 (527)
Q Consensus 122 ig~IlaGilLGPs~L~~i~~~~~~~~l~~lgl~~llF~~Gle~d~~-----~lr~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (527)
++.+++|+++|-..... ....+...+..+.+++|.+|+++--+ ++|+.+++++.+.+..++.+.+.+.+.+.
T Consensus 2 l~~li~Gi~lG~~~~~~---~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ 78 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP---FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASL 78 (191)
T ss_pred eeeHHHHHHHHHHhccc---ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888543222 22237888999999999999998554 46667788998888887777766667778
Q ss_pred HhcCChHHHHHHHHHH---hhccHHHHHHHHhhccccCCchhHHHHHHHHHhhHHHHHHHHH
Q 036333 197 LFGIKLSEGIFVGTFL---SMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFAL 255 (527)
Q Consensus 197 ~lg~~~~~al~lg~~l---s~TS~~vv~~~L~e~~~~~s~~g~l~l~~s~l~D~~~~~l~al 255 (527)
+++.++.+++.+++-. |.|++ . +.+. .+.+.|.++.=.=++.+..++++.-+
T Consensus 79 ll~~~~~~~lav~sG~GwYSlsg~-~----i~~~--~~~~~G~iafl~n~~RE~~a~~~~P~ 133 (191)
T PF03956_consen 79 LLGLSLKESLAVASGFGWYSLSGV-L----ITQL--YGPELGTIAFLSNLFREILAIILIPL 133 (191)
T ss_pred HhcCCHHHHHHHHccCcHHHhHHH-H----HHhh--hCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999988887654 33332 2 2332 35567776666666666666555433
No 43
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.49 E-value=0.14 Score=57.05 Aligned_cols=130 Identities=16% Similarity=0.294 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHhChhHHHHHHHHHHHhcCCcchh-hHHHhHHhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHH
Q 036333 321 SVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQ-HTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVI 399 (527)
Q Consensus 321 ~l~~~l~~~~~ae~lg~s~~lgafvaGl~l~~~~~~~-~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~ 399 (527)
++..++.+..++..++++..+|=.++|++++..-.+. +-.+.++.+.++-+.++...+|+++|++.++..........+
T Consensus 14 ~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~ 93 (558)
T PRK10669 14 GLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAI 93 (558)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHH
Confidence 3556667788888999999999999999997642211 112456677777778787788999999888654432222222
Q ss_pred HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCCcH
Q 036333 400 LVITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEG 452 (527)
Q Consensus 400 ~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~~~lvl~~~a~~~g~i~~ 452 (527)
..++.=++.++...+.++.++.+++.+|..++.-+. .++...-.+.|.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s 144 (558)
T PRK10669 94 AQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDS 144 (558)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccC
Confidence 222222334444556678899999999887666332 334445556665554
No 44
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=96.49 E-value=0.08 Score=54.13 Aligned_cols=155 Identities=16% Similarity=0.158 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHH----HhChhHHHHHHHHHHHhcC-C-cchhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHHHHHH
Q 036333 321 SVAFCLLVAWCSD----KLGLSLELGSFAAGVMIST-T-DLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDIL 394 (527)
Q Consensus 321 ~l~~~l~~~~~ae----~lg~s~~lgafvaGl~l~~-~-~~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~~~~ 394 (527)
.+++.....++++ ..++++.+=|.+.|++++| . ...++..+-++.....++.+=-+..|+++++..+.+..+..
T Consensus 6 ~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~~ 85 (305)
T PF03601_consen 6 CFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGWKG 85 (305)
T ss_pred HHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCccH
Confidence 3444555555555 3578889999999999998 4 44455555566556688888888999999999887654433
Q ss_pred HHHHHHHHHHHHH-HHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCCcHHHHHHHHHH--HHHhhhhhHH
Q 036333 395 LASVILVITIKTI-IVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGT--TALSLVTTPL 471 (527)
Q Consensus 395 l~l~~~~~~~K~~-~~~l~~~~~~~~~~~~~~lgl~l~~rG~~~lvl~~~a~~~g~i~~~~~~~lv~~--~~ls~l~~p~ 471 (527)
+...+..+..-+. ..++..+.+|++++.+..++.+.+.=|.-+.+..+-..+.+ -++..|++.+.+ -++.+++-|.
T Consensus 86 ~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~-~~~~a~ava~V~lfg~vam~~~P~ 164 (305)
T PF03601_consen 86 LLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAK-EEDVAYAVATVFLFGTVAMFLYPL 164 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCC-CCceeeeehHHHHHHHHHHHHHHH
Confidence 3333333333344 44444499999999999999987777765555554444433 122333332222 2445677788
Q ss_pred HHhhh
Q 036333 472 LFKLI 476 (527)
Q Consensus 472 l~~~~ 476 (527)
+.++.
T Consensus 165 l~~~l 169 (305)
T PF03601_consen 165 LGHAL 169 (305)
T ss_pred HHHHh
Confidence 77765
No 45
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=96.44 E-value=0.17 Score=53.75 Aligned_cols=117 Identities=15% Similarity=0.190 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCcCCCchHHHHHHHH-HHHHHHHHHHhhcCCchHHHHhhhHH
Q 036333 98 DLVVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQ-FGVIFLLFALGLEFSTTKLRVVRAVA 176 (527)
Q Consensus 98 ~l~lil~~a~~~~~l~~rl~lP~iig~IlaGilLGPs~L~~i~~~~~~~~l~~-lgl~~llF~~Gle~d~~~lr~~~~~~ 176 (527)
.+..++......+++++.+|++.++|-.++|+++.-+-.+..+-.+.++.+.+ +-+.++...+|+++|++.+..++..+
T Consensus 223 ~~~~~l~i~l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~ 302 (397)
T COG0475 223 FILFVLLLVLGAAYLAELLGLSMILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLI 302 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHH
Confidence 35556666777888999999999999999999999754332122446888888 88889999999999999999887776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036333 177 VLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSM 214 (527)
Q Consensus 177 ~~~~~~~~~l~~~~~~~~~~~lg~~~~~al~lg~~ls~ 214 (527)
+....+.+..=+..+...+...|.+...++..|..++.
T Consensus 303 l~~~~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~ 340 (397)
T COG0475 303 LLLVALAILGKILGAYLAARLLGFSKRLALGIGLLLRQ 340 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhh
Confidence 65555555555555666667788777777777776665
No 46
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=96.43 E-value=0.095 Score=60.92 Aligned_cols=134 Identities=16% Similarity=0.208 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCcCCCchHHHHHH-HHHHHHHHHHHHhhcCCchHHHHhh--hHHH
Q 036333 101 VVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETV-AQFGVIFLLFALGLEFSTTKLRVVR--AVAV 177 (527)
Q Consensus 101 lil~~a~~~~~l~~rl~lP~iig~IlaGilLGPs~L~~i~~~~~~~~l-~~lgl~~llF~~Gle~d~~~lr~~~--~~~~ 177 (527)
+++++....++++..+|+..++|..++|+++...-++. .-.+.++.+ ..+-+.+++...|+++|+..+.... ...+
T Consensus 276 ~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~~~~~-~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~ 354 (832)
T PLN03159 276 LILTGVMISGFITDAIGTHSVFGAFVFGLVIPNGPLGV-TLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLV 354 (832)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCcchHH-HHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHH
Confidence 33444455677888899999999999999987321110 012234444 3455667788899999998875321 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhccHH--HHHHHHhhccccCCchh
Q 036333 178 LGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSSTA--VVLKFLMEKNSTNALHG 235 (527)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~lg~~~~~al~lg~~ls~TS~~--vv~~~L~e~~~~~s~~g 235 (527)
.+.++.++.=++.+.+.+.+.|.++..++.+|..++.-... +++.+-.+.+.++.+.-
T Consensus 355 ~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f 414 (832)
T PLN03159 355 LVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESF 414 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhh
Confidence 11122222222333444577899999999999999884421 24444455555554443
No 47
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=96.29 E-value=0.25 Score=46.69 Aligned_cols=101 Identities=19% Similarity=0.275 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhcCCchHHHHhhhHHHHH--HH-HHHHHHHHHHHHHH-HHhcCChHHHHHHHHHHhhccH-HHHHHHHh
Q 036333 151 FGVIFLLFALGLEFSTTKLRVVRAVAVLG--GL-LQIFLFMFLCGITA-LLFGIKLSEGIFVGTFLSMSST-AVVLKFLM 225 (527)
Q Consensus 151 lgl~~llF~~Gle~d~~~lr~~~~~~~~~--~~-~~~~l~~~~~~~~~-~~lg~~~~~al~lg~~ls~TS~-~vv~~~L~ 225 (527)
+.+.+.+|..|++++++++++..|+...+ ++ .+.++.=+++..++ .+++.+. ....|..+...+| +..+....
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~--~~~~Gl~l~~~~P~~~~s~~~t 79 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSP--ALALGLLLVAACPGGPASNVFT 79 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--H--HHHHHHHHHHHS-B-THHHHHH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHhcCCcHHHHHHHH
Confidence 45788999999999999999876553322 22 33332222333334 4444433 3444444333222 12222223
Q ss_pred hccccCCchhHHHHHHHHHhhHHHHHHHHHH
Q 036333 226 EKNSTNALHGQVTIGTLILQDCAVGLLFALL 256 (527)
Q Consensus 226 e~~~~~s~~g~l~l~~s~l~D~~~~~l~al~ 256 (527)
.+ .+.+. .+..+...++.+.+....-+.
T Consensus 80 ~l--~~Gd~-~ls~~lt~istll~~~~~P~~ 107 (187)
T PF01758_consen 80 YL--AGGDV-ALSVSLTLISTLLAPFLMPLL 107 (187)
T ss_dssp HH--TT--H-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--hCCCc-ccccceeeHHHHHHHHHHHHH
Confidence 32 22232 355566667776665554433
No 48
>PRK05326 potassium/proton antiporter; Reviewed
Probab=96.15 E-value=0.19 Score=55.89 Aligned_cols=115 Identities=15% Similarity=0.133 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcCCcchh---hHHHhHHhHHHHHHHHHHHHhccccchhhhhHHHHHHHH
Q 036333 320 ASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQ---HTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLA 396 (527)
Q Consensus 320 ~~l~~~l~~~~~ae~lg~s~~lgafvaGl~l~~~~~~~---~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~~~~l~ 396 (527)
+.+.++..+..+++.+|++..++-.++|++++....+. .-.+..+.+.++.+++.....|+++|.+.+...+...+.
T Consensus 13 ~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~ 92 (562)
T PRK05326 13 LLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPALS 92 (562)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHH
Confidence 34555666778888999999999999999998642221 112345667788999998899999999998876655443
Q ss_pred HHHHHH-HHHHHHHHHHHhhcCCChHHHHHHHHHHhhHH
Q 036333 397 SVILVI-TIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIG 434 (527)
Q Consensus 397 l~~~~~-~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG 434 (527)
+....+ +.=.+.++...+.++.++.+++.+|..++.-.
T Consensus 93 la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td 131 (562)
T PRK05326 93 LATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTD 131 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCc
Confidence 333332 22233344556678999999999998766655
No 49
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=96.03 E-value=0.82 Score=46.14 Aligned_cols=132 Identities=11% Similarity=0.085 Sum_probs=69.1
Q ss_pred HHHHHHHHhcCCcchhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCh
Q 036333 342 GSFAAGVMISTTDLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKGFG-YNN 420 (527)
Q Consensus 342 gafvaGl~l~~~~~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~~~~-~~~ 420 (527)
=+++.|+++.|- .+++.+.+.+-.....|+|-...|..+|++.+.+.....+++-+.+.+.--...++.-++.+ -+.
T Consensus 176 lPlliG~ilGNL--D~~~r~fl~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~~~~dr~~~g~~g 253 (314)
T TIGR00793 176 LPFLVGFALGNL--DPELRDFFSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPLILADKFIGGGDG 253 (314)
T ss_pred HHHHHHHHHhcC--CHHHHHHhccCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHHhcCCCC
Confidence 356667777764 34566666777788999998899999999888654322222222222233344455555553 232
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhCCCCcHHHHHHHHH-HHHHhhhhhHHHHhhh
Q 036333 421 KTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLG-TTALSLVTTPLLFKLI 476 (527)
Q Consensus 421 ~~~~~lgl~l~~rG~~~lvl~~~a~~~g~i~~~~~~~lv~-~~~ls~l~~p~l~~~~ 476 (527)
.-.+..|-.-+.--....+++..-.+.... .+.-+..+. ++++|.++.|++..++
T Consensus 254 ~aG~A~sstAGnAvatPaavA~adPs~~~~-a~~ATaqvAaavivTaiL~Pilta~~ 309 (314)
T TIGR00793 254 TAGIAASSSAGAAVATPVLIAEMVPAFKPV-APAATALVATSVIVTSLLVPIATVWW 309 (314)
T ss_pred chhhHHHHHHHHhhhhHHHHHHhChhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223333221111111222232222222222 223333343 4677889999998876
No 50
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=95.97 E-value=2.4 Score=43.88 Aligned_cols=99 Identities=14% Similarity=0.134 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhhcCCchHHHHhhhH---HHHHHHHHHH-HHHHHHHHHHHH-hcCChHHHHHHHHHHhhccHHHHHHHHh
Q 036333 151 FGVIFLLFALGLEFSTTKLRVVRAV---AVLGGLLQIF-LFMFLCGITALL-FGIKLSEGIFVGTFLSMSSTAVVLKFLM 225 (527)
Q Consensus 151 lgl~~llF~~Gle~d~~~lr~~~~~---~~~~~~~~~~-l~~~~~~~~~~~-lg~~~~~al~lg~~ls~TS~~vv~~~L~ 225 (527)
++++++||..|++++++++++..|+ ....-+.+.+ .|. ++..++.. ++.+. .+.+|..+..+.|.-.....-
T Consensus 47 ~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Pl-la~~l~~l~~~~~p--~l~~GliLv~~~Pgg~~S~v~ 123 (328)
T TIGR00832 47 IGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPF-LMFLLAWLFLRDLF--EYIAGLILLGLARCIAMVFVW 123 (328)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHH-HHHHHHHHHcCCCH--HHHHHHHHHHhcchHHHHHHH
Confidence 4566899999999999999876544 3333333333 343 33344443 35443 366666665544433333322
Q ss_pred hccccCCchhHHHHHHHHHhhHHHHHHHH
Q 036333 226 EKNSTNALHGQVTIGTLILQDCAVGLLFA 254 (527)
Q Consensus 226 e~~~~~s~~g~l~l~~s~l~D~~~~~l~a 254 (527)
.. +.+.+.. +.++...++-+.+.++..
T Consensus 124 T~-lAkGnva-lsv~lt~~stLl~~~~~P 150 (328)
T TIGR00832 124 NQ-LAKGDPE-YTLVLVAVNSLFQVFLYA 150 (328)
T ss_pred HH-HcCCCHH-HHHHHHHHHHHHHHHHHH
Confidence 21 2344442 555555677776655543
No 51
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=95.97 E-value=0.66 Score=48.02 Aligned_cols=117 Identities=13% Similarity=0.121 Sum_probs=80.6
Q ss_pred ChhHHHHHHHHHHHhcCCc-chhhHHHhHHhHHHHH----HHHHHHHhccc-cchhhhhHHH-HHHHHHHHHHHHHHHHH
Q 036333 336 GLSLELGSFAAGVMISTTD-LAQHTLEQIEPIRNMF----AALFLASIGML-IHVHFLWNHI-DILLASVILVITIKTII 408 (527)
Q Consensus 336 g~s~~lgafvaGl~l~~~~-~~~~l~~~l~~~~~~f----~plFF~~iGl~-i~~~~l~~~~-~~~l~l~~~~~~~K~~~ 408 (527)
++|+..-+.+.|.++.... ..++++++...+..|+ .+..++-+|+. +|++.+.+.. +..+.+++..+++=.++
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~ 282 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILG 282 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHH
Confidence 6789999999999988653 3455666555544332 23334455776 7888877655 34455566667777888
Q ss_pred HHHHHhhcCCChHHH-HHHHHHHhhHH-HHHHHHHHHHhhCCCCcH
Q 036333 409 VFTVVKGFGYNNKTS-VLVGMSLAQIG-EFAFVLLSRSSNLHLVEG 452 (527)
Q Consensus 409 ~~l~~~~~~~~~~~~-~~lgl~l~~rG-~~~lvl~~~a~~~g~i~~ 452 (527)
.++..++.|+-+-|+ +..|+.++.+| .-++.+++.+.+.++++-
T Consensus 283 s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmpf 328 (347)
T TIGR00783 283 GAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIPF 328 (347)
T ss_pred HHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhcccccH
Confidence 888999999766665 55566777766 677888888877777663
No 52
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=95.87 E-value=0.23 Score=45.62 Aligned_cols=104 Identities=19% Similarity=0.267 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHhCCCCCcCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHHH
Q 036333 101 VVIVFATCGGIAFACAGQP--VITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVL 178 (527)
Q Consensus 101 lil~~a~~~~~l~~rl~lP--~iig~IlaGilLGPs~L~~i~~~~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~~ 178 (527)
+.+.++...+++++++|+| .++|.++++.++.-.+....+-+ +.+.+++.+++=-..|.+++.+.+++..+....
T Consensus 2 ~~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P---~~~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~ 78 (156)
T TIGR03082 2 LLLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLP---PWLLALAQVVIGILIGSRFTREVLAELKRLWPA 78 (156)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCC---HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 3456778888999999988 78888888888774432222222 345566667777789999999988876654443
Q ss_pred HHH---HHHHHHHHHHHHHHHHhcCChHHHHH
Q 036333 179 GGL---LQIFLFMFLCGITALLFGIKLSEGIF 207 (527)
Q Consensus 179 ~~~---~~~~l~~~~~~~~~~~lg~~~~~al~ 207 (527)
... ..+....+.+..+..+.|.++..+++
T Consensus 79 ~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~L 110 (156)
T TIGR03082 79 ALLSTVLLLALSALLAWLLARLTGVDPLTAFL 110 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 222 22222222223334556778766653
No 53
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=95.87 E-value=0.29 Score=50.66 Aligned_cols=153 Identities=12% Similarity=0.110 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHH-----hChhHHHHHHHHHHHhcCCc---chhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHHHHHH
Q 036333 323 AFCLLVAWCSDK-----LGLSLELGSFAAGVMISTTD---LAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDIL 394 (527)
Q Consensus 323 ~~~l~~~~~ae~-----lg~s~~lgafvaGl~l~~~~---~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~~~~ 394 (527)
.+++.+.++++. .++++.+=+.+.|++++|.- ..++...-++-....++-+=-+..|+++++..+.......
T Consensus 12 ~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G~~~ 91 (335)
T TIGR00698 12 LILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVGPNE 91 (335)
T ss_pred HHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhhHHH
Confidence 344444455443 47888888999999999842 2233333344334566666677889999999887654444
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCCcHHHHHHHHH--HHHHhhhhhHH
Q 036333 395 LASVILVITIKTII-VFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLG--TTALSLVTTPL 471 (527)
Q Consensus 395 l~l~~~~~~~K~~~-~~l~~~~~~~~~~~~~~lgl~l~~rG~~~lvl~~~a~~~g~i~~~~~~~lv~--~~~ls~l~~p~ 471 (527)
+...+..+..-+.. .++..+.+|++++.+..+|.+-+.=|.-+.+..+-..+.+ -++..|++... .-.+.+++-|.
T Consensus 92 l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~-~~~~a~ava~V~lfgt~am~l~P~ 170 (335)
T TIGR00698 92 IVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIKAE-KEKVSVAIAIVVIFGTTGIFLYPS 170 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccCCC-ccceeeeehHHHHHHHHHHHHHHH
Confidence 44433344444444 4444588999999999999887777765554444333322 11222222221 12344566676
Q ss_pred HHhhh
Q 036333 472 LFKLI 476 (527)
Q Consensus 472 l~~~~ 476 (527)
+..+.
T Consensus 171 l~~~l 175 (335)
T TIGR00698 171 IYHYA 175 (335)
T ss_pred HHHHH
Confidence 66543
No 54
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=95.70 E-value=2.8 Score=42.51 Aligned_cols=101 Identities=12% Similarity=0.115 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHHhhh--HHHHHHHH-HH-HHHHHHHHHHHHHhcCChHHHHHHHHHHhhcc-HHHHHH
Q 036333 148 VAQFGVIFLLFALGLEFSTTKLRVVRA--VAVLGGLL-QI-FLFMFLCGITALLFGIKLSEGIFVGTFLSMSS-TAVVLK 222 (527)
Q Consensus 148 l~~lgl~~llF~~Gle~d~~~lr~~~~--~~~~~~~~-~~-~l~~~~~~~~~~~lg~~~~~al~lg~~ls~TS-~~vv~~ 222 (527)
+.-..+.+.+|..|+.++.+++++..| +....++. .. +.|.+ +..+..+++.+. ....|..+..+. +++...
T Consensus 9 ~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Pll-a~~l~~~~~l~~--~~~~glvL~~~~P~~~~s~ 85 (286)
T TIGR00841 9 ILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLT-GFLLAKVFKLPP--ELAVGVLIVGCCPGGTASN 85 (286)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHhCCCH--HHHHHHHheeeCCCchHHH
Confidence 334448889999999999999988765 23333333 33 34543 344455566543 334444443322 222223
Q ss_pred HHhhccccCCchhHHHHHHHHHhhHHHHHHHH
Q 036333 223 FLMEKNSTNALHGQVTIGTLILQDCAVGLLFA 254 (527)
Q Consensus 223 ~L~e~~~~~s~~g~l~l~~s~l~D~~~~~l~a 254 (527)
+..+.- +.+. .+..+...++-+.+.+...
T Consensus 86 v~t~~~--~gn~-~la~~~~~~stlls~vt~P 114 (286)
T TIGR00841 86 VFTYLL--KGDM-ALSISMTTCSTLLALGMMP 114 (286)
T ss_pred HHHHHh--CCCH-hhhhHHHHHHHHHHHHHHH
Confidence 333332 2222 3445555555555555443
No 55
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=95.63 E-value=0.094 Score=48.87 Aligned_cols=122 Identities=20% Similarity=0.236 Sum_probs=81.1
Q ss_pred HHHHHHHHHHH--HhcCCchHHHHHHHHHHhCCCCCc--CCCchHHHHHHHHHHHHHHHHHHhhcCCchH---HHHhhhH
Q 036333 103 IVFATCGGIAF--ACAGQPVITGYLLAGSIIGPGGFN--FVSEMVQVETVAQFGVIFLLFALGLEFSTTK---LRVVRAV 175 (527)
Q Consensus 103 l~~a~~~~~l~--~rl~lP~iig~IlaGilLGPs~L~--~i~~~~~~~~l~~lgl~~llF~~Gle~d~~~---lr~~~~~ 175 (527)
+.++.+++.+- +++++-...|.+++|+++|-..-. ...+....+.+.++|+.++++.+|++--++- +|+.+.+
T Consensus 6 i~lG~llG~i~i~~~~~LG~a~G~L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~ 85 (169)
T PF06826_consen 6 IALGYLLGRIKIPGGFSLGAAGGVLFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLK 85 (169)
T ss_pred HHHHHHhcceeeccceeccccHHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33444444433 556677777999999999954210 1124446688999999999999999988774 4556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhcCChHHHHHHHHHH-hhccHHHHHHHHhh
Q 036333 176 AVLGGLLQIFLFMFLCGITAL-LFGIKLSEGIFVGTFL-SMSSTAVVLKFLME 226 (527)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~-~lg~~~~~al~lg~~l-s~TS~~vv~~~L~e 226 (527)
....+++-..++.+++....+ +++.++ ....|... +.|++|......+.
T Consensus 86 ~~~~~~~i~~~~~~~~~~~~~~~~~l~~--~~~~G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 86 LLLLGVIITLVPLLIALVIGRYLFKLNP--GIAAGILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCH--HHHHHHHHccccCcHHHHHHHHh
Confidence 667777777777777777665 777764 44445444 44777776665444
No 56
>PRK03818 putative transporter; Validated
Probab=95.60 E-value=0.16 Score=56.36 Aligned_cols=126 Identities=24% Similarity=0.323 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHH-HhcCCchHHHHHHHHHHhCCCC--CcCCCchHHHHHHHHHHHHHHHHHHhhcCCchHH---H
Q 036333 97 SDLVVVIVFATCGGIAF-ACAGQPVITGYLLAGSIIGPGG--FNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKL---R 170 (527)
Q Consensus 97 ~~l~lil~~a~~~~~l~-~rl~lP~iig~IlaGilLGPs~--L~~i~~~~~~~~l~~lgl~~llF~~Gle~d~~~l---r 170 (527)
+.+.+.+.++++++.+- +.+++- +.|.+++|+++|-.. ++..-+......+.++|+.+++|.+|++.-++-+ |
T Consensus 9 ~~l~l~i~lG~~lG~i~i~g~~LG-~~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~ 87 (552)
T PRK03818 9 SILALVAVVGLWIGNIKIRGVGLG-IGGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLR 87 (552)
T ss_pred HHHHHHHHHHHhhcceEECCCccc-cHHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHH
Confidence 34444455555544421 113333 389999999999621 1221234456779999999999999999998854 4
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH-hhccHHHHHHHHh
Q 036333 171 VVRAVAVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFL-SMSSTAVVLKFLM 225 (527)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~al~lg~~l-s~TS~~vv~~~L~ 225 (527)
+.+.+...++++-++++.+++..+.++++.++. ...|... +.|++|......+
T Consensus 88 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~G~~aGa~T~tp~l~aa~~ 141 (552)
T PRK03818 88 KSGLRLNLFAVLIVILGGLVTAILHKLFGIPLP--VMLGIFSGAVTNTPALGAGQQ 141 (552)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHhhccccccHHHHHHHH
Confidence 555555666666666666666666677887653 4444444 4577777666554
No 57
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.31 E-value=0.45 Score=48.71 Aligned_cols=151 Identities=15% Similarity=0.166 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHhcCC-cchhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHH
Q 036333 323 AFCLLVAWCSDKLGLSLELGSFAAGVMISTT-DLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVILV 401 (527)
Q Consensus 323 ~~~l~~~~~ae~lg~s~~lgafvaGl~l~~~-~~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~ 401 (527)
+..+.-....+..|+++..=|.+.|++++.- +.+++...-++.-...++.+=-+..|++++++.+.+...-.+.+....
T Consensus 23 a~~l~~~~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~v~~~~~~ 102 (334)
T COG2855 23 AMLLGAFFFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSGVLIIAIT 102 (334)
T ss_pred HHHHhchHHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCccHHHHHHHH
Confidence 3333444455566677888899999999854 334455555555566777777888999999988865444445555556
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHhh---hhhHHHHhh
Q 036333 402 ITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTALSL---VTTPLLFKL 475 (527)
Q Consensus 402 ~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~~~lvl~~~a~~~g~i~~~~~~~lv~~~~ls~---l~~p~l~~~ 475 (527)
+..-++.+++..+++|+|++.++.+|.+-+.=|.-++...+... +-=++|+-..+..++++.+ +.-|.+..+
T Consensus 103 l~~t~~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvi--ka~~~eva~aIa~V~lfgtia~llyP~l~~~ 177 (334)
T COG2855 103 LSSTFLFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPVI--KAEEEEVAVAIAVVVLFGTLAMLLYPLLYPL 177 (334)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcC--CCCccccceehhhHHHHHHHHHHHHHHHHHH
Confidence 66677777888889999999999999876666654444333222 2223344433433444433 344555444
No 58
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=95.30 E-value=0.092 Score=58.34 Aligned_cols=110 Identities=12% Similarity=0.153 Sum_probs=75.2
Q ss_pred hcCCchHHHHHHHHHHhCCCCC-cCC---CchHHHHHHHHHHHHHHHHHHhhcCCchH---HHHhhhHHHHHHHHHHHHH
Q 036333 115 CAGQPVITGYLLAGSIIGPGGF-NFV---SEMVQVETVAQFGVIFLLFALGLEFSTTK---LRVVRAVAVLGGLLQIFLF 187 (527)
Q Consensus 115 rl~lP~iig~IlaGilLGPs~L-~~i---~~~~~~~~l~~lgl~~llF~~Gle~d~~~---lr~~~~~~~~~~~~~~~l~ 187 (527)
++.+-...|.+++|+++|-.+- +.. -+......+.++|+.++++.+|++--++- +++.+.+....+++-+++|
T Consensus 412 p~~lg~~~g~l~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~ 491 (562)
T TIGR03802 412 PLTLGTGGGALISGLVFGWLRSKHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILP 491 (562)
T ss_pred ceeehhhHHHHHHHHHHHHhcccCCcceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3445566789999999986421 111 13335677999999999999999988774 4555666666677667777
Q ss_pred HHHHHHHH-HHhcCChHHHHHHHHHH-hhccHHHHHHHHhh
Q 036333 188 MFLCGITA-LLFGIKLSEGIFVGTFL-SMSSTAVVLKFLME 226 (527)
Q Consensus 188 ~~~~~~~~-~~lg~~~~~al~lg~~l-s~TS~~vv~~~L~e 226 (527)
.+++.+++ ++++.++ ....|++. +.|++|........
T Consensus 492 ~~~~~~~~~~~~~~~~--~~~~G~~aG~~t~t~~l~~a~~~ 530 (562)
T TIGR03802 492 LIITMLIGKYVLKYDP--ALLLGALAGARTATPALGAVLER 530 (562)
T ss_pred HHHHHHHHHHHhCCCH--HHHHHHhhccCCCcHHHHHHHHh
Confidence 77777776 6777765 35555543 56888877666443
No 59
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=95.08 E-value=0.2 Score=55.77 Aligned_cols=107 Identities=17% Similarity=0.247 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHH-HhcCCchHHHHHHHHHHhCCCCCcCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHHHhhh---
Q 036333 99 LVVVIVFATCGGIAF-ACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRA--- 174 (527)
Q Consensus 99 l~lil~~a~~~~~l~-~rl~lP~iig~IlaGilLGPs~L~~i~~~~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~--- 174 (527)
+.+++.++++++.+- +.+++-.+.|-+++|+++|..+... + +.+.++|+.+++|.+|++.-++-++..+|
T Consensus 15 lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~~i-~-----~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~ 88 (562)
T TIGR03802 15 LFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGIQI-D-----PGVKAVFFALFIFAIGYEVGPQFFASLKKDGL 88 (562)
T ss_pred HHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCCCC-C-----hHHHHHHHHHHHHHhhhccCHHHHHHHHhccH
Confidence 444444444444432 3467777889999999999765432 2 23667999999999999999996655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCh--HHHHHHHHH
Q 036333 175 VAVLGGLLQIFLFMFLCGITALLFGIKL--SEGIFVGTF 211 (527)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~~~~~~lg~~~--~~al~lg~~ 211 (527)
+....+++.++...+++..+.+++|.+. ...++-|+.
T Consensus 89 ~~~~~a~~~~~~~~~~~~~~~~~~g~~~~~~~Gl~aGal 127 (562)
T TIGR03802 89 REIILALVFAVSGLITVYALAKIFGLDKGTAAGLAAGGL 127 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhchh
Confidence 4444444444443344444556778764 334444443
No 60
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=95.06 E-value=0.26 Score=56.14 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-h-cCCChHHHHHHHHHHhhHHH
Q 036333 366 IRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVK-G-FGYNNKTSVLVGMSLAQIGE 435 (527)
Q Consensus 366 ~~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~-~-~~~~~~~~~~lgl~l~~rG~ 435 (527)
+..+.+++-....|++++...++..|.....+++.+...-++++.+.++ + .++++..++.+|.++++-.-
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDP 145 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDP 145 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcH
Confidence 6778888887889999999999988865544444444444444444444 3 59999999999998887663
No 61
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=94.95 E-value=0.5 Score=52.14 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHhChhHHHHHHHHHHHhcCCcchhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHH-
Q 036333 321 SVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVI- 399 (527)
Q Consensus 321 ~l~~~l~~~~~ae~lg~s~~lgafvaGl~l~~~~~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~- 399 (527)
.+..+.....+++.++++..++-.++|++++..+......-.-+.+..+++|......|+++|.+.++.++.....+.+
T Consensus 6 l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~ 85 (525)
T TIGR00831 6 LVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFL 85 (525)
T ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 3445555667788889999999999999887432211110000123457888888888999999999877755443333
Q ss_pred HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhHHHHH
Q 036333 400 LVITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFA 437 (527)
Q Consensus 400 ~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~~~ 437 (527)
.+++.-.+.++...+..++|+..++.+|..+++-..+.
T Consensus 86 ~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpva 123 (525)
T TIGR00831 86 LVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVA 123 (525)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHH
Confidence 33333333344444467899999999999988887554
No 62
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=94.68 E-value=0.66 Score=47.79 Aligned_cols=106 Identities=22% Similarity=0.279 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHhCCCCCcCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHHHhhh
Q 036333 97 SDLVVVIVFATCGGIAFACAGQP--VITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRA 174 (527)
Q Consensus 97 ~~l~lil~~a~~~~~l~~rl~lP--~iig~IlaGilLGPs~L~~i~~~~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~ 174 (527)
.++.+++.++...+++++|+|+| .++|.++.+.++.-.+.....-+..+.. ++.+++=-.+|.+++.+.+|+..|
T Consensus 155 ~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~~---~aqv~iG~~iG~~f~~~~l~~~~~ 231 (318)
T PF05145_consen 155 LWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWLVN---AAQVLIGASIGSRFTRETLRELRR 231 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHHH---HHHHHHHHHHHccccHHHHHHHHH
Confidence 45677778899999999998876 5677788887777553333333334444 444555667999999999988766
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHhcCChHHHH
Q 036333 175 VAVLGGLLQIFLFMFLCG----ITALLFGIKLSEGI 206 (527)
Q Consensus 175 ~~~~~~~~~~~l~~~~~~----~~~~~lg~~~~~al 206 (527)
..... +...+..+..+. .+..+.|.++..++
T Consensus 232 ~~~~~-l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~ 266 (318)
T PF05145_consen 232 LLPPA-LLSTLLLLALCALFAWLLSRLTGIDFLTAL 266 (318)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 54433 222222223332 33445677765443
No 63
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=94.65 E-value=6.1 Score=40.60 Aligned_cols=135 Identities=13% Similarity=0.066 Sum_probs=72.2
Q ss_pred HhcCCchHHHHHHHHHHhCCCCCc---CCC--chHHHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHHHHHH---HHH-
Q 036333 114 ACAGQPVITGYLLAGSIIGPGGFN---FVS--EMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGL---LQI- 184 (527)
Q Consensus 114 ~rl~lP~iig~IlaGilLGPs~L~---~i~--~~~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~~~~~---~~~- 184 (527)
+|.--+-+.-++++|+.+|-..-+ .+. +...++.--.+++++.++-.=+++|.+++++..|..=.+.+ ...
T Consensus 13 dk~l~~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwi 92 (342)
T COG0798 13 DKYLTLWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWI 92 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHH
Confidence 343344466778899999844322 222 12245666678899999999899999999886654222211 111
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhh----ccHHHHHHHHhhccccCCchhHHHHHHHHHhhHHHHHHHHHH
Q 036333 185 FLFMFLCGITALLFGIKLSEGIFVGTFLSM----SSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALL 256 (527)
Q Consensus 185 ~l~~~~~~~~~~~lg~~~~~al~lg~~ls~----TS~~vv~~~L~e~~~~~s~~g~l~l~~s~l~D~~~~~l~al~ 256 (527)
+-|.....+...+++... ....|.++-. +|-..+-.-|.. .+. +.++..-.+||+..+++++..
T Consensus 93 i~P~lm~~la~~fl~~~p--ey~~GlILlglApC~aMVivw~~La~-----Gd~-~~tlv~Va~n~l~qiv~y~~~ 160 (342)
T COG0798 93 IGPLLMFALAWFFLPDEP--EYRAGLILLGLAPCIAMVIVWSGLAK-----GDR-ELTLVLVAFNSLLQIVLYAPL 160 (342)
T ss_pred HHHHHHHHHHHHHhCCCH--HHHHHHHHHHhhhhHHHHHHHHhhcc-----CcH-hhhhHHHHHHHHHHHHHHHHH
Confidence 223322222223333221 2333333322 333333333322 222 456666678999888877544
No 64
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=94.16 E-value=9.2 Score=40.63 Aligned_cols=325 Identities=18% Similarity=0.184 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh-------cCCchHHHHHHHHHHhCCCCCcCCCchHHHHHHHHHH------HHH-HHHHHh
Q 036333 96 ISDLVVVIVFATCGGIAFAC-------AGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFG------VIF-LLFALG 161 (527)
Q Consensus 96 i~~l~lil~~a~~~~~l~~r-------l~lP~iig~IlaGilLGPs~L~~i~~~~~~~~l~~lg------l~~-llF~~G 161 (527)
+-.+.++.+++.+++++=+| +|=|.++..+....+.- .|++++. .++.+.++- -.| -....|
T Consensus 31 ~g~~a~~~v~G~~l~~IG~riPi~k~yiGGg~il~~f~ps~Lv~---~~~ip~~-~~~~v~~fm~~~~Fl~ffIa~LI~G 106 (414)
T PF03390_consen 31 IGGFAVMMVLGFLLGEIGDRIPILKDYIGGGAILCIFVPSALVY---FGLIPES-VVEAVTNFMKGSNFLYFFIAALIVG 106 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhhChhhhccCChHHHHHHHHHHHHHH---cCCCCHH-HHHHHHHHhccCChHHHHHHHHHHh
Confidence 35667777777777777665 33444444333333332 3455543 223322221 111 122233
Q ss_pred --hcCCchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh------ccHHHHHHHHhhccccCCc
Q 036333 162 --LEFSTTKLRVVRAVAVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSM------SSTAVVLKFLMEKNSTNAL 233 (527)
Q Consensus 162 --le~d~~~lr~~~~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~al~lg~~ls~------TS~~vv~~~L~e~~~~~s~ 233 (527)
+.+|.+.+.|...+-....+.+.+..+++++..+.++|.++..+++.-+.=-+ -+.|...-.-+-.+.-.++
T Consensus 107 SILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~~ 186 (414)
T PF03390_consen 107 SILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQDAEE 186 (414)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHHHHhCCCHHH
Confidence 58899999998888888888888888888888899999988777665332111 0111110000001111111
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhh---hc-cc
Q 036333 234 HGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPWLLKLMTSLS---SQ-FC 309 (527)
Q Consensus 234 ~g~l~l~~s~l~D~~~~~l~al~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~~~~~l~~~~~~~~---~~-~~ 309 (527)
+=..++...++.++++++.-+++.-+......+.+. -+.+.+.+ .+ -+
T Consensus 187 ~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGn----------------------------G~L~~~~~~~~~~~~~ 238 (414)
T PF03390_consen 187 YFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGN----------------------------GQLLKGGDDEEEEAKK 238 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC----------------------------ceEEeCCccccccccc
Confidence 112223333333443333322222221110000000 00000000 00 00
Q ss_pred cccchhHH-----HHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcCC-cchhhHHH---hHHhH-HHHHHHHHHHHhc
Q 036333 310 LVQTNELY-----QLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTT-DLAQHTLE---QIEPI-RNMFAALFLASIG 379 (527)
Q Consensus 310 ~~~~~e~~-----~~~~l~~~l~~~~~ae~lg~s~~lgafvaGl~l~~~-~~~~~l~~---~l~~~-~~~f~plFF~~iG 379 (527)
.+..-+.. .++.+.+-.....+...+++|...-..+.=.++.-. -..+++++ ++..+ ..-+.+...+-+|
T Consensus 239 ~~~~~~~~~~g~Gllla~~~y~~G~ll~~~i~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiG 318 (414)
T PF03390_consen 239 KEKPIDFSDMGAGLLLACSFYILGVLLSKLIGIHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIG 318 (414)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000110 111111111222333444555554444444443322 12334444 33333 3344455556778
Q ss_pred cc-cchhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCChHHH-HHHHHHHhhHH-HHHHHHHHHHhhCCCCcH
Q 036333 380 ML-IHVHFLWNHIDI-LLASVILVITIKTIIVFTVVKGFGYNNKTS-VLVGMSLAQIG-EFAFVLLSRSSNLHLVEG 452 (527)
Q Consensus 380 l~-i~~~~l~~~~~~-~l~l~~~~~~~K~~~~~l~~~~~~~~~~~~-~~lgl~l~~rG-~~~lvl~~~a~~~g~i~~ 452 (527)
.. +|++.+.+...+ -+.+++..+++-.++.++..++.|+-+-|+ +..|+.++.+| .-++.+++.+.+.++++-
T Consensus 319 v~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~LmpF 395 (414)
T PF03390_consen 319 VAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAANRMELMPF 395 (414)
T ss_pred hhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehhhhcccccH
Confidence 88 888887665433 345555666778888889999999766665 56676777666 777888888887777664
No 65
>COG2985 Predicted permease [General function prediction only]
Probab=94.10 E-value=0.48 Score=50.52 Aligned_cols=106 Identities=26% Similarity=0.467 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHhCCCCCcCCCchHHHHHHHHHHHHHHHHHHhhcCCch---HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036333 120 VITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTT---KLRVVRAVAVLGGLLQIFLFMFLCGITAL 196 (527)
Q Consensus 120 ~iig~IlaGilLGPs~L~~i~~~~~~~~l~~lgl~~llF~~Gle~d~~---~lr~~~~~~~~~~~~~~~l~~~~~~~~~~ 196 (527)
...|-++.|..++..++.+..+.-.+ |+|++++.+.+|+|--+. .+|+.+++-..++++-++.......++..
T Consensus 36 ~l~g~L~Vgl~l~~~~~~i~~~~l~f----~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~allivi~~~~~a~~l~k 111 (544)
T COG2985 36 VLFGVLFVGLFLGQYGFTINTDMLHF----ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLIVIAALLLAWVLHK 111 (544)
T ss_pred chhhHhHHHHHhcccccccccchhhh----hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667788888887776665444333 999999999999999887 56778888777776654443334444445
Q ss_pred HhcCCh--HHHHHHHHHHhhccHHHHHHHHhhccc
Q 036333 197 LFGIKL--SEGIFVGTFLSMSSTAVVLKFLMEKNS 229 (527)
Q Consensus 197 ~lg~~~--~~al~lg~~ls~TS~~vv~~~L~e~~~ 229 (527)
+++++. ...++-|+.-|..+.+-+...+.+.+.
T Consensus 112 ~~~~~~~~~~Gm~sGAlTsTP~L~aa~~~L~~lg~ 146 (544)
T COG2985 112 LFGIDLGLIAGMFSGALTSTPGLGAAQDILRELGA 146 (544)
T ss_pred hcCCCHHHhhhhhcccccCCchhHHHHHHHHhhcc
Confidence 666553 445555554444444444455555543
No 66
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=93.82 E-value=9.7 Score=39.69 Aligned_cols=85 Identities=15% Similarity=0.174 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhccc-cchhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCChHHHHH-HHHHHhhHH-HHHHHHHHH
Q 036333 368 NMFAALFLASIGML-IHVHFLWNHIDI-LLASVILVITIKTIIVFTVVKGFGYNNKTSVL-VGMSLAQIG-EFAFVLLSR 443 (527)
Q Consensus 368 ~~f~plFF~~iGl~-i~~~~l~~~~~~-~l~l~~~~~~~K~~~~~l~~~~~~~~~~~~~~-lgl~l~~rG-~~~lvl~~~ 443 (527)
++.-|+.+ .+|.. +|+..+.+...+ -.++++.++++-..+.++..|+.|+-+-|+.. -|+.++.+| .-++.+++.
T Consensus 327 ~~t~~Lm~-giGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDvaVLsA 405 (438)
T COG3493 327 NLTWPLMA-GIGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVAVLSA 405 (438)
T ss_pred hhHHHHHH-hhhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchHHhhh
Confidence 45556554 55776 777776554332 34444556677788899999999976666554 458888877 667888887
Q ss_pred HhhCCCCcHH
Q 036333 444 SSNLHLVEGK 453 (527)
Q Consensus 444 a~~~g~i~~~ 453 (527)
+-+.++++-.
T Consensus 406 a~RM~LmpFA 415 (438)
T COG3493 406 ADRMELMPFA 415 (438)
T ss_pred cchhccccHH
Confidence 7777777643
No 67
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=93.81 E-value=1.4 Score=46.47 Aligned_cols=109 Identities=9% Similarity=0.091 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHH--hcCCchHHHHHHHHHHhCCCC--CcCC-CchHHHHHHHHHHHHHHHHHHhhcCCchHHHHhh
Q 036333 99 LVVVIVFATCGGIAFA--CAGQPVITGYLLAGSIIGPGG--FNFV-SEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVR 173 (527)
Q Consensus 99 l~lil~~a~~~~~l~~--rl~lP~iig~IlaGilLGPs~--L~~i-~~~~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~ 173 (527)
+.+.+.++..+....+ -+.+|..++.+++|+++.... .+.. -+.+.++.++++.+-+++..+=..+++..+.+..
T Consensus 226 i~i~~~~G~~i~~~l~~~~~~lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l~~~a 305 (368)
T PF03616_consen 226 ILIAIGLGYIISALLKKIGLTLPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVLADYA 305 (368)
T ss_pred HHHHHHHHHHHHHHHHHcCcCCchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3333444444444444 367999999999999997531 1111 1455789999999999998888899999999988
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHhcCChHHHHH
Q 036333 174 AVAVLGGLLQIFLFMFLCGIT-ALLFGIKLSEGIF 207 (527)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~~-~~~lg~~~~~al~ 207 (527)
-+.+.+-++++++..+.+.++ ...+|.++..+..
T Consensus 306 ~Plliil~~q~i~~~~f~~fv~fr~~gkdydaavm 340 (368)
T PF03616_consen 306 LPLLIILAVQTILMVLFAYFVTFRVMGKDYDAAVM 340 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhCCChhHHHH
Confidence 877777677777666655544 4577888755543
No 68
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=93.72 E-value=9.5 Score=39.29 Aligned_cols=149 Identities=15% Similarity=0.124 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHhCh--hHHHHHHHHHHHhcCCc-chhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHHH---H
Q 036333 319 LASVAFCLLVAWCSDKLGL--SLELGSFAAGVMISTTD-LAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHI---D 392 (527)
Q Consensus 319 ~~~l~~~l~~~~~ae~lg~--s~~lgafvaGl~l~~~~-~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~---~ 392 (527)
...+..+...+++.+.+++ ...+|+++.+.++.... ..-.+-+. +.....-+.=..+|.+++...+.+.. .
T Consensus 158 ~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~---l~~~aqv~iG~~iG~~f~~~~l~~~~~~~~ 234 (318)
T PF05145_consen 158 ALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPW---LVNAAQVLIGASIGSRFTRETLRELRRLLP 234 (318)
T ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHH---HHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 3445566677788887776 46788888877765331 11111111 22333334445789999977765432 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCCcHHHHHHHHHH-HHHhhhhhHH
Q 036333 393 ILLASVILVITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGT-TALSLVTTPL 471 (527)
Q Consensus 393 ~~l~l~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~~~lvl~~~a~~~g~i~~~~~~~lv~~-~~ls~l~~p~ 471 (527)
..+...+..+..-....++..++.+++..+++.- .+|-|.-+..+.....+.+. ..-+..=.. .+.-.++.|.
T Consensus 235 ~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~La---~aPGGl~eM~l~A~~l~~d~---~~V~~~q~~Rl~~v~~~~p~ 308 (318)
T PF05145_consen 235 PALLSTLLLLALCALFAWLLSRLTGIDFLTALLA---TAPGGLAEMALIALALGADV---AFVAAHQVVRLLFVLLLAPF 308 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH---hCCccHHHHHHHHHHcCCCh---HHHHHHHHHHHHHHHHHHHH
Confidence 3444455555667778888889999998886533 58999888877666655442 221121122 2333456788
Q ss_pred HHhhh
Q 036333 472 LFKLI 476 (527)
Q Consensus 472 l~~~~ 476 (527)
+.|+.
T Consensus 309 ~~r~~ 313 (318)
T PF05145_consen 309 IARWL 313 (318)
T ss_pred HHHHH
Confidence 77775
No 69
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=93.55 E-value=2.2 Score=44.56 Aligned_cols=111 Identities=18% Similarity=0.192 Sum_probs=65.6
Q ss_pred hHHHHHHHHHHHHhccccchhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH-HH-hhHHHHHHH
Q 036333 365 PIRNMFAALFLASIGMLIHVHFLWNHIDIL---LASVILVITIKTIIVFTVVKGFGYNNKTSVLVGM-SL-AQIGEFAFV 439 (527)
Q Consensus 365 ~~~~~f~plFF~~iGl~i~~~~l~~~~~~~---l~l~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl-~l-~~rG~~~lv 439 (527)
++.+.|+-+||+++|+.-++..+...+... +..........-......+...+.++.-++..|- +| +..| .+..
T Consensus 66 ~l~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHG-taAA 144 (404)
T COG0786 66 SLQDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHG-TAAA 144 (404)
T ss_pred ccccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCc-hHHH
Confidence 467899999999999999998886654322 2222233345555555666777887766655532 11 1222 3455
Q ss_pred HHHHHhhCCCCcHHHHHHHHHH--HHHhhhhhHHHHhhh
Q 036333 440 LLSRSSNLHLVEGKLYLLLLGT--TALSLVTTPLLFKLI 476 (527)
Q Consensus 440 l~~~a~~~g~i~~~~~~~lv~~--~~ls~l~~p~l~~~~ 476 (527)
.+....+.|.-+.....+-..| .+.-.+++.++.|+.
T Consensus 145 ~~~~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~l 183 (404)
T COG0786 145 WGPTFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWL 183 (404)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHH
Confidence 6667777776655444433333 344456665555553
No 70
>PRK04972 putative transporter; Provisional
Probab=93.40 E-value=0.58 Score=52.00 Aligned_cols=120 Identities=19% Similarity=0.252 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHH-HhcCCchHHHHHHHHHHhCCCCCcCCCchHHHHHHHHHHHHHHHHHHhhcCCchHH---HHhh
Q 036333 98 DLVVVIVFATCGGIAF-ACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKL---RVVR 173 (527)
Q Consensus 98 ~l~lil~~a~~~~~l~-~rl~lP~iig~IlaGilLGPs~L~~i~~~~~~~~l~~lgl~~llF~~Gle~d~~~l---r~~~ 173 (527)
.+.+.+.++++++.+- +.+++-...|-+++|+++|-.+... + +.+.++|+.+++|.+|++.-++-+ |+.+
T Consensus 16 ~lf~~i~lG~~lG~i~~~~~~LG~~~g~L~vgl~~g~~~~~~-~-----~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g 89 (558)
T PRK04972 16 LLFVVLALGLCLGKLRLGSIQLGNSIGVLVVSLLLGQQHFSI-N-----TDALNLGFMLFIFCVGVEAGPNFFSIFFRDG 89 (558)
T ss_pred HHHHHHHHHHhhhceEEeeEecCcchHHHHHHHHHHhCCCCC-C-----hHHHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Confidence 3444455555544442 4466777789999999999765432 1 234589999999999999988854 4555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH-hhccHHHHHHHHh
Q 036333 174 AVAVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFL-SMSSTAVVLKFLM 225 (527)
Q Consensus 174 ~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~al~lg~~l-s~TS~~vv~~~L~ 225 (527)
.+...++++.++++.+++..+.+++|+++. ...|... +.|++|.......
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~G~~aGa~T~tp~l~~a~~ 140 (558)
T PRK04972 90 KNYLMLALVMVGSALVIALGLGKLFGWDIG--LTAGMLAGSMTSTPVLVGAGD 140 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHhhccccCcHHHHHHHH
Confidence 555666666666666666666677777653 3333333 3466666655544
No 71
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=93.04 E-value=0.44 Score=49.13 Aligned_cols=131 Identities=9% Similarity=0.050 Sum_probs=69.4
Q ss_pred HHHHHHHHhcCCcchhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 036333 342 GSFAAGVMISTTDLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKGFGYNNK 421 (527)
Q Consensus 342 gafvaGl~l~~~~~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~~~~~~~~ 421 (527)
.+++.|..+.+- .+.+.+...+=.++++|.+-...|.+++++.+.......+++.+..++......+..-|+++....
T Consensus 178 lplliG~~lgnl--~~~l~~~~~~Gi~~lLp~~~~~lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~~Rl~~~~~g 255 (326)
T PRK05274 178 LPLLVGFILGNL--DPELRQFLGKAVPVLIPFFAFALGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLADRLIGGGNG 255 (326)
T ss_pred HHHHHHHHHHhH--HHhhHHHhcCCcEEEHHHHHHHHhcceeHhHHHhcCCcchhhhhhHhhccchhhHhHhheeecCCC
Confidence 678888888772 233344444434679999988899999998876543223333333344445545555577743322
Q ss_pred ---HHHHHHHHHhhHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHhhhhhHHHHhhh
Q 036333 422 ---TSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKLI 476 (527)
Q Consensus 422 ---~~~~lgl~l~~rG~~~lvl~~~a~~~g~i~~~~~~~lv~~~~ls~l~~p~l~~~~ 476 (527)
-+...+.+-+.-|-.. ++.......-..++.-..+..+++++.++.|++..+.
T Consensus 256 ~~g~a~~ttaG~aic~pAA--vaa~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~~ 311 (326)
T PRK05274 256 VAGAAAGSTAGNAVATPAA--VAAADPSFAPFAPAATAQVAAAVIVTAILAPILTAWW 311 (326)
T ss_pred cchHHHHHHHHHHHHHHHH--HHhhccccccchHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222211112111 2222222222333333333344567889999988865
No 72
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=92.96 E-value=0.9 Score=43.24 Aligned_cols=127 Identities=15% Similarity=0.102 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcCCcchhhHHHhHHhHHHHHHHHHHHHhcccc--ch---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036333 341 LGSFAAGVMISTTDLAQHTLEQIEPIRNMFAALFLASIGMLI--HV---HFLWNHIDILLASVILVITIKTIIVFTVVKG 415 (527)
Q Consensus 341 lgafvaGl~l~~~~~~~~l~~~l~~~~~~f~plFF~~iGl~i--~~---~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~~ 415 (527)
++++++|+++......+ .+..+...+..+-+....+|+++ |- +.+.+..+..+.+.+..+++-.+++++..++
T Consensus 2 l~~li~Gi~lG~~~~~~--~~~~~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~l 79 (191)
T PF03956_consen 2 LIALILGILLGYFLRPP--FSLIDKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLL 79 (191)
T ss_pred eeeHHHHHHHHHHhccc--ccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777776432211 22224454433333333445554 42 2233333446666777788999999999999
Q ss_pred cCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH----HHhhhhhHHHHhh
Q 036333 416 FGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTT----ALSLVTTPLLFKL 475 (527)
Q Consensus 416 ~~~~~~~~~~lgl~l~~rG~~~lvl~~~a~~~g~i~~~~~~~lv~~~----~ls~l~~p~l~~~ 475 (527)
.+++.+|++.++.+++.-..-+..+... .+.+.-++..++= +++.+..|++.|+
T Consensus 80 l~~~~~~~lav~sG~GwYSlsg~~i~~~------~~~~~G~iafl~n~~RE~~a~~~~P~~~r~ 137 (191)
T PF03956_consen 80 LGLSLKESLAVASGFGWYSLSGVLITQL------YGPELGTIAFLSNLFREILAIILIPLLARY 137 (191)
T ss_pred hcCCHHHHHHHHccCcHHHhHHHHHHhh------hCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999888887666665541 2223333333321 4566778888773
No 73
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=92.87 E-value=1.5 Score=40.19 Aligned_cols=109 Identities=17% Similarity=0.237 Sum_probs=67.5
Q ss_pred CCchHHHHHHHHHHhCCCCC-c---CCCchHHHHHHHHHHHHHHHHHHhhcCCchHHH---Hhh-hHHHHHHHHHHHHHH
Q 036333 117 GQPVITGYLLAGSIIGPGGF-N---FVSEMVQVETVAQFGVIFLLFALGLEFSTTKLR---VVR-AVAVLGGLLQIFLFM 188 (527)
Q Consensus 117 ~lP~iig~IlaGilLGPs~L-~---~i~~~~~~~~l~~lgl~~llF~~Gle~d~~~lr---~~~-~~~~~~~~~~~~l~~ 188 (527)
++-..-|.+++|+++|-.+- + +--+......+.++|+.++++.+|++--.+-+. +.+ .....++.+-.+++.
T Consensus 20 ~LG~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~ 99 (154)
T TIGR01625 20 KLGNAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPT 99 (154)
T ss_pred EecccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 34446789999999996431 0 111233567899999999999999999887554 433 122333334444555
Q ss_pred HHHHHHH-HHhcCChHHHHHHHHHH-hhccHHHHHHHHhhc
Q 036333 189 FLCGITA-LLFGIKLSEGIFVGTFL-SMSSTAVVLKFLMEK 227 (527)
Q Consensus 189 ~~~~~~~-~~lg~~~~~al~lg~~l-s~TS~~vv~~~L~e~ 227 (527)
+++.++. ++++.++ ....|.+. +.|++|......+..
T Consensus 100 ~~~~~~~~~~~~~~~--~~~~G~~aGa~T~tpaL~aa~~~~ 138 (154)
T TIGR01625 100 LLVAVALIKLLRINY--ALTAGMLAGATTNTPALDAANDTL 138 (154)
T ss_pred HHHHHHHHHHhCCCH--HHHHHHHhccccChHHHHHHHHHh
Confidence 5555544 6677765 35555543 558888776665543
No 74
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=92.43 E-value=8.6 Score=37.35 Aligned_cols=109 Identities=21% Similarity=0.242 Sum_probs=81.8
Q ss_pred hhHHHhHHhHH-HHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhHHH
Q 036333 357 QHTLEQIEPIR-NMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGE 435 (527)
Q Consensus 357 ~~l~~~l~~~~-~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~ 435 (527)
+.+..-++|-. .+-.|+|= +.+.+.++|..++..+++..+.-+...++.++++|.+.. +-.++.||..
T Consensus 62 ~~i~~lLgPAtVAlAvPLYk-------q~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~----~~~Sl~PkSv 130 (230)
T COG1346 62 QWINFLLGPATVALAVPLYK-------QRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPE----LILSLLPKSV 130 (230)
T ss_pred HHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----HHHHhccccc
Confidence 44555566643 56677762 346677788877777777778888899999999998754 3345799999
Q ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHHhhhhhHHHHhhh
Q 036333 436 FAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKLI 476 (527)
Q Consensus 436 ~~lvl~~~a~~~g~i~~~~~~~lv~~~~ls~l~~p~l~~~~ 476 (527)
..=+....+.+.|-+++-.-..++.+-++..+++|.+.++.
T Consensus 131 TTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 131 TTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred ccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888899999998887776667777777778888887775
No 75
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=92.32 E-value=8.8 Score=35.14 Aligned_cols=118 Identities=17% Similarity=0.189 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHhChh--HHHHHHHHHHHhcCCc-chhhHHHhHHhHHHHHHHHHHHHhccccchhhhhH---HHHHHH
Q 036333 322 VAFCLLVAWCSDKLGLS--LELGSFAAGVMISTTD-LAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWN---HIDILL 395 (527)
Q Consensus 322 l~~~l~~~~~ae~lg~s--~~lgafvaGl~l~~~~-~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~---~~~~~l 395 (527)
+.++...+++.+.+|+. ..+|+.+++.++.-.. ..-+.-+. +..+-.-+.=..+|.+++.+.+.+ .+...+
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~---~~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~l 80 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPW---LLALAQVVIGILIGSRFTREVLAELKRLWPAAL 80 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHH---HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 34555667777888885 7889999888877432 11111111 233334444468899999877643 333344
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHh
Q 036333 396 ASVILVITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSS 445 (527)
Q Consensus 396 ~l~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~~~lvl~~~a~ 445 (527)
..++..+..-....++..+..++++.+++ +| ..|-|.-+..+.....
T Consensus 81 ~~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~~A~~~ 127 (156)
T TIGR03082 81 LSTVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAALAAEL 127 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHHHHHHh
Confidence 55555566677788888899999998875 33 4788877777655443
No 76
>PRK04972 putative transporter; Provisional
Probab=92.02 E-value=0.81 Score=50.86 Aligned_cols=126 Identities=14% Similarity=0.255 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHh-----cCCchHHHHHHHHHHhCCCCC-cCC---CchHHHHHHHHHHHHHHHHHHhhcCCch--
Q 036333 99 LVVVIVFATCGGIAFAC-----AGQPVITGYLLAGSIIGPGGF-NFV---SEMVQVETVAQFGVIFLLFALGLEFSTT-- 167 (527)
Q Consensus 99 l~lil~~a~~~~~l~~r-----l~lP~iig~IlaGilLGPs~L-~~i---~~~~~~~~l~~lgl~~llF~~Gle~d~~-- 167 (527)
+.+-++++.+++.+-=+ +++-.--|.+++|+++|-..- +.. -+......+.++|+.+++..+|+.--.+
T Consensus 386 ~~~Gi~lG~llG~i~i~~~g~~~~LG~agG~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~ 465 (558)
T PRK04972 386 FCAFFIIGLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSAGSGIN 465 (558)
T ss_pred HHHHHHHHHHHcceeEeeCCeeeeccccHHHHHHHHHHHhccccCCCceeeCHHHHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 44444555555554433 345556689999999995221 000 1334567899999999999999988776
Q ss_pred -HHHHhhhHHHHHHHHHHHHHHHHHHHHH-HHhcCChHHHHHHHHHH-hhccHHHHHHHHhh
Q 036333 168 -KLRVVRAVAVLGGLLQIFLFMFLCGITA-LLFGIKLSEGIFVGTFL-SMSSTAVVLKFLME 226 (527)
Q Consensus 168 -~lr~~~~~~~~~~~~~~~l~~~~~~~~~-~~lg~~~~~al~lg~~l-s~TS~~vv~~~L~e 226 (527)
.+++.+...+..+++-.++|.+++.+++ ++++.++. ..+|++. +.|++|........
T Consensus 466 ~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~~~--~~~G~~aG~~t~~~~l~~~~~~ 525 (558)
T PRK04972 466 NGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRA--LLFGAIMGARTCAPAMEIISDT 525 (558)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH--HHHHHHhCCCCCcHHHHHHHhh
Confidence 4455566666677777777877777776 67787764 5566554 55777777665443
No 77
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=92.01 E-value=17 Score=37.74 Aligned_cols=121 Identities=16% Similarity=0.112 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHhCh--hHHHHHHHHHHHhcCCc-chhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHHH---HH
Q 036333 320 ASVAFCLLVAWCSDKLGL--SLELGSFAAGVMISTTD-LAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHI---DI 393 (527)
Q Consensus 320 ~~l~~~l~~~~~ae~lg~--s~~lgafvaGl~l~~~~-~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~---~~ 393 (527)
......+..+.+...+++ ...+|+++.|..+.-.- ..-++-+-+ ..+-..+.=..+|.++|-..+.+.. ..
T Consensus 192 ~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl---~~va~~~iG~~IG~~f~~~~l~~~~r~~~~ 268 (352)
T COG3180 192 LLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWL---LAVAQALIGALIGSRFDRSILREAKRLLPA 268 (352)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHH---HHHHHHHHHHHHcccccHHHHHHhHhhcch
Confidence 344455555566666555 34577777777775431 111111111 1233344456789999976664332 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 036333 394 LLASVILVITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSN 446 (527)
Q Consensus 394 ~l~l~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~~~lvl~~~a~~ 446 (527)
.+..++..++.-...+++..++.+.++.++. +| .+|-|.-++.....+.+
T Consensus 269 ~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~-La--~sPGGl~~ma~~A~~l~ 318 (352)
T COG3180 269 ILVSIIALMAIAAGMAGLLSWLTGIDLNTAY-LA--TSPGGLDTMAAIAAALG 318 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH-HH--cCCCcHHHHHHHHHHcC
Confidence 3344444455566677777888899988765 33 57888777776665554
No 78
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=91.79 E-value=0.67 Score=53.40 Aligned_cols=203 Identities=16% Similarity=0.075 Sum_probs=109.0
Q ss_pred CCCCcccchHhHH----------------HHHHHHHhhhCC---CCCcccccc--------ccccccccccCCCCCCCCC
Q 036333 14 TDAGSFNNSVAEK----------------QAVLETVARVKP---KKNDTKEEK--------SFKLNDVFNLDNDNGAEET 66 (527)
Q Consensus 14 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~---~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 66 (527)
.+-.+||.....+ +++++|++.... ..+.+++.+ .+.....|.+..+..-...
T Consensus 162 ~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~p~ 241 (769)
T KOG1650|consen 162 QSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVVRPL 241 (769)
T ss_pred hhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeehhhh
Confidence 3457899888888 789999988842 223333332 1344555556555543333
Q ss_pred CceecCCCCeEEecCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHhC---CCCCcCCCch
Q 036333 67 PTLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVVVIVFATCGGIAFACAG-QPVITGYLLAGSIIG---PGGFNFVSEM 142 (527)
Q Consensus 67 ~~l~~~~~~~~~~~~p~~~~p~l~~d~~li~~l~lil~~a~~~~~l~~rl~-lP~iig~IlaGilLG---Ps~L~~i~~~ 142 (527)
...++++ +-. ..|... ..+...+........+..-++ .+++.|..+.|+.+= |.+-.+ .
T Consensus 242 ~~wi~kr-~pe--~~~~~~-----------~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L---~ 304 (769)
T KOG1650|consen 242 MKWIIKR-TPE--GKPVSD-----------AYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSAL---I 304 (769)
T ss_pred HHHHhhc-CCC--CCcccc-----------ceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHH---H
Confidence 3333332 111 122222 011122222223334444455 666777777776652 211111 1
Q ss_pred HHHHHH-HHHHHHHHHHHHhhcCCchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhccH--HH
Q 036333 143 VQVETV-AQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSST--AV 219 (527)
Q Consensus 143 ~~~~~l-~~lgl~~llF~~Gle~d~~~lr~~~~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~al~lg~~ls~TS~--~v 219 (527)
+-+|.+ .++-+.+.....|++.|...+.+ +.............-++.+...+.+++.|+..++.+|.+++.-.. -+
T Consensus 305 ekle~~~~~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~ 383 (769)
T KOG1650|consen 305 EKLEDLVSGLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELI 383 (769)
T ss_pred HHHHHHHHHHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHH
Confidence 113333 24555667778899999999998 333333333333444455555667889999999999999886332 23
Q ss_pred HHHHHhhccccCCch
Q 036333 220 VLKFLMEKNSTNALH 234 (527)
Q Consensus 220 v~~~L~e~~~~~s~~ 234 (527)
+...-.+.|..+++.
T Consensus 384 ~~~~~~~~~~~~~~~ 398 (769)
T KOG1650|consen 384 VLNTGLDRKILSDEG 398 (769)
T ss_pred HHHHHhhcCCcccch
Confidence 344445666555544
No 79
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=90.89 E-value=5.9 Score=41.88 Aligned_cols=124 Identities=17% Similarity=0.169 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-hHHHHHHHHHHh---hHHHHHHHHH
Q 036333 366 IRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKGFGYN-NKTSVLVGMSLA---QIGEFAFVLL 441 (527)
Q Consensus 366 ~~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~~~~~~-~~~~~~lgl~l~---~rG~~~lvl~ 441 (527)
+++.++|+--...=++.|++.+.....-.+...++..++-.+++.++...++.. ..|.+.+.-.+. .-|..-++..
T Consensus 56 v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs~N~~Av 135 (378)
T PF05684_consen 56 VWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGSVNFVAV 135 (378)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCchhHHHHH
Confidence 345555555444445789888876655555554555555555665555555433 234433322121 2345555555
Q ss_pred HHHhhCCCCcHHHHHHHHHH-HHHhhhhhHHHHhhhhhhhhhhhhhhhcCCCCCc
Q 036333 442 SRSSNLHLVEGKLYLLLLGT-TALSLVTTPLLFKLIPGVVHLGVLLRWFSPDSSI 495 (527)
Q Consensus 442 ~~a~~~g~i~~~~~~~lv~~-~~ls~l~~p~l~~~~p~~~~~~~~~r~~~~~~~~ 495 (527)
..+.+ .+++.++..+.+ .+++.+-..++..+ |+ +....+||.+++..+
T Consensus 136 ~~al~---~~~~~~~a~~aaDnv~~~~~~~~l~~l-~~--~~~~~~~~~~~~~~~ 184 (378)
T PF05684_consen 136 AEALG---VSDSLFAAALAADNVVMALWFAFLLAL-PP--FARKFDRWTKADTSS 184 (378)
T ss_pred HHHHC---CCHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hhHHhhhccCCCccc
Confidence 55544 456777766553 34444333333332 22 122345566555444
No 80
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=90.71 E-value=2.9 Score=42.63 Aligned_cols=86 Identities=20% Similarity=0.145 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhCCCCCcCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 036333 121 ITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMFLCGITALLFGI 200 (527)
Q Consensus 121 iig~IlaGilLGPs~L~~i~~~~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~~~~~~~~~l~~~~~~~~~~~lg~ 200 (527)
.+-.++.|+++|+.--+ -.+.++.=..+++.+..|..|.++|++.+.+.+...+.+++..+.++...+.++..++|.
T Consensus 169 lilpILiGmilGNld~~---~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rllg~ 245 (312)
T PRK12460 169 ALLPLVLGMILGNLDPD---MRKFLTKGGPLLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRLVGG 245 (312)
T ss_pred HHHHHHHHHHHhccchh---hHHHHhccceEeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 56678889999972110 122333333458889999999999999999999999999888888887777777777787
Q ss_pred ChHHHHHHH
Q 036333 201 KLSEGIFVG 209 (527)
Q Consensus 201 ~~~~al~lg 209 (527)
+...+..++
T Consensus 246 ~~~~g~li~ 254 (312)
T PRK12460 246 TGIAGAAAS 254 (312)
T ss_pred ChhHHHHHH
Confidence 777777777
No 81
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=90.42 E-value=8.8 Score=39.36 Aligned_cols=112 Identities=17% Similarity=0.201 Sum_probs=68.2
Q ss_pred HhcCCchHHHHHHHHHHhCCCCCcCCCc-hHHHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHHHHHHHHHHHHHHHHH
Q 036333 114 ACAGQPVITGYLLAGSIIGPGGFNFVSE-MVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMFLCG 192 (527)
Q Consensus 114 ~rl~lP~iig~IlaGilLGPs~L~~i~~-~~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~~~~~~~~~l~~~~~~ 192 (527)
+-++.|.+++. ++|+++...+....+. .+.++.+++....+-||..|+.++.++.++.++........-.++.=+++.
T Consensus 178 ~~~~nP~iia~-i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~~ 256 (321)
T TIGR00946 178 KLIKFPPLWAP-LLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVMA 256 (321)
T ss_pred HHHhCCChHHH-HHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 34688888875 4557777554432211 346899999999999999999999888877666666555555443223334
Q ss_pred HHHHHhcCChHHHHHHHHHHhhccHHHHHHHHhhc
Q 036333 193 ITALLFGIKLSEGIFVGTFLSMSSTAVVLKFLMEK 227 (527)
Q Consensus 193 ~~~~~lg~~~~~al~lg~~ls~TS~~vv~~~L~e~ 227 (527)
.+..+++.+.. ..-.....+..-+++...++.+.
T Consensus 257 ~~~~~~~l~~~-~~~~~vl~aa~P~a~~~~i~A~~ 290 (321)
T TIGR00946 257 GISKLIGLRGL-ELSVAILQAALPGGAVAAVLATE 290 (321)
T ss_pred HHHHHhCCChH-HHHHHHHHHcCChhhHHHHHHHH
Confidence 44455666532 22333344444455555555543
No 82
>COG2431 Predicted membrane protein [Function unknown]
Probab=89.45 E-value=2 Score=42.72 Aligned_cols=89 Identities=19% Similarity=0.415 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHhCCCCCcCCCchHHHHHHHHHHHHHHHHHHhhcCCch--HHHH--hhhHHHHHHHHHHHHHHHHHHH-H
Q 036333 120 VITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTT--KLRV--VRAVAVLGGLLQIFLFMFLCGI-T 194 (527)
Q Consensus 120 ~iig~IlaGilLGPs~L~~i~~~~~~~~l~~lgl~~llF~~Gle~d~~--~lr~--~~~~~~~~~~~~~~l~~~~~~~-~ 194 (527)
.+.++++.|+++|-..-...+ ..+...+..+.+++|.+|.++.-+ ..|+ ..|+.+..++..++-. ..++. .
T Consensus 108 k~~~~vl~g~~~G~l~~~~~~---~~~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~Lnk~gl~l~~i~ilss-liGG~ia 183 (297)
T COG2431 108 KLLGVVLLGLALGLLTGSFLN---FPENASEYLLYLLLFLIGIQLGNSGISLRQVLLNKRGLILAFITLLSS-LIGGLIA 183 (297)
T ss_pred HHHHHHHHHHHHHHHhccccc---CchhHHHHHHHHHHHHHHHHhccccchhhhHHhccchHHHHHHHHHHH-HHHHHHH
Confidence 466677777777743322222 256788899999999999998721 1121 2256666666554444 44444 4
Q ss_pred HHHhcCChHHHHHHHHHH
Q 036333 195 ALLFGIKLSEGIFVGTFL 212 (527)
Q Consensus 195 ~~~lg~~~~~al~lg~~l 212 (527)
++++++|+.+++.+++-.
T Consensus 184 a~~l~lpl~~~lAmasG~ 201 (297)
T COG2431 184 AFLLDLPLTTGLAMASGF 201 (297)
T ss_pred HHHHhccHHHHHHHHhcc
Confidence 577888888877766543
No 83
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=89.41 E-value=6.6 Score=41.78 Aligned_cols=121 Identities=17% Similarity=0.150 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHhCCCC----CcCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHH
Q 036333 97 SDLVVVIVFATCGGIAFAC--AGQPVITGYLLAGSIIGPGG----FNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLR 170 (527)
Q Consensus 97 ~~l~lil~~a~~~~~l~~r--l~lP~iig~IlaGilLGPs~----L~~i~~~~~~~~l~~lgl~~llF~~Gle~d~~~lr 170 (527)
..+.+.+..++.+....+. +.+|..++.+++|+++.+.. ...+ .++.++.++++.+-+++-.+=..+++..+.
T Consensus 222 ~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~~~~~~~~~-~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~ 300 (398)
T TIGR00210 222 ALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPLSFKKFPWV-AERAVSVIGNVSLSLFLAIALMSLQLWELA 300 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHhCcccc-chHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 4455555566666666664 78999999999999998631 1122 234889999999999988888899999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHH-HHhcCChHHHH----HHHHHHhhccHH
Q 036333 171 VVRAVAVLGGLLQIFLFMFLCGITA-LLFGIKLSEGI----FVGTFLSMSSTA 218 (527)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~lg~~~~~al----~lg~~ls~TS~~ 218 (527)
..+-..+.+.+.+++...+.+.++. ..+|.+...++ ..|..+.+|.++
T Consensus 301 ~~a~Plliil~~q~i~~~l~~~fv~fr~mg~~ydaaV~~ag~~G~~lGatpta 353 (398)
T TIGR00210 301 DLAGPIALILLVQVMFMALYAIFVTFRLMGKDYDAAVLCAGHCGFGLGATPTA 353 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhccchHHHHHHhcccccccccchHHH
Confidence 9999988888888888776655444 56777754444 344444444443
No 84
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=87.72 E-value=5.6 Score=42.78 Aligned_cols=118 Identities=16% Similarity=0.130 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHhChhHHHHHHHHHHHhcCC---cchhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHHHHHHHHH
Q 036333 321 SVAFCLLVAWCSDKLGLSLELGSFAAGVMISTT---DLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLAS 397 (527)
Q Consensus 321 ~l~~~l~~~~~ae~lg~s~~lgafvaGl~l~~~---~~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l 397 (527)
++.+...+..+.+.+..+...-..+.|+..... ....+....-|.+..+++|.-...-|+++|.+.+++++..+..+
T Consensus 14 il~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~~~~~I~~L 93 (429)
T COG0025 14 ILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELRRVWRSILVL 93 (429)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHHHHHHHHHHHHHhHhcCCHHHHHHhHHHHHHH
Confidence 344555556666666665555555555554411 11111111222233677777766789999999998887665554
Q ss_pred HHHHHHHHHHHHHHHHhhc--CCChHHHHHHHHHHhhHHHHHH
Q 036333 398 VILVITIKTIIVFTVVKGF--GYNNKTSVLVGMSLAQIGEFAF 438 (527)
Q Consensus 398 ~~~~~~~K~~~~~l~~~~~--~~~~~~~~~lgl~l~~rG~~~l 438 (527)
.....+...++.....++. ++|+..++.+|..+++-.-+..
T Consensus 94 a~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v 136 (429)
T COG0025 94 ALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAV 136 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhh
Confidence 4444444555554455444 7888899999888877765443
No 85
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=87.72 E-value=0.15 Score=53.48 Aligned_cols=116 Identities=18% Similarity=0.182 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCcCCCchHHHHHHH-HHHHHHHHHHHhhcCCchHHH---Hh
Q 036333 97 SDLVVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVA-QFGVIFLLFALGLEFSTTKLR---VV 172 (527)
Q Consensus 97 ~~l~lil~~a~~~~~l~~rl~lP~iig~IlaGilLGPs~L~~i~~~~~~~~l~-~lgl~~llF~~Gle~d~~~lr---~~ 172 (527)
.+....+........+++.+|.+.+++..++|+++.....+. +-.+.++.+. ++...+++...|+++|.+.+. ..
T Consensus 213 ~~~~~~l~~~~~~~~~a~~~g~s~~l~af~~Gl~~~~~~~~~-~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~ 291 (380)
T PF00999_consen 213 IFILLVLALILLLYGLAEILGLSGILGAFIAGLILSNSPFAE-RLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSV 291 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHhhhccccccccccccceeeeeehccccccccc-hhhhcccchhhHHHhhHHhhhhcccccccccccchhh
Confidence 334455555666678899999999999999999999322111 1123456666 677778888999999988873 33
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 036333 173 RAVAVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLS 213 (527)
Q Consensus 173 ~~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~al~lg~~ls 213 (527)
+.......+...+.=++.+.......|.++.++..+|..+.
T Consensus 292 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (380)
T PF00999_consen 292 IILVLLLLIAILLGKFIGVYLASRLFGIPWKEALFIGLGML 332 (380)
T ss_dssp -------------------------------HHHHTTTTSS
T ss_pred hhhHHHHHHHHHHhhhceeehhhhhcccccchhHHHHHhhc
Confidence 33333222222222222233334455778888888886665
No 86
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=86.10 E-value=5.1 Score=40.53 Aligned_cols=118 Identities=16% Similarity=0.295 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcCCcchhhHHHhHHh-HHHHHHHHHHHHhccccchhhhhHHHHHHHHH
Q 036333 319 LASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEP-IRNMFAALFLASIGMLIHVHFLWNHIDILLAS 397 (527)
Q Consensus 319 ~~~l~~~l~~~~~ae~lg~s~~lgafvaGl~l~~~~~~~~l~~~l~~-~~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l 397 (527)
...+.++|....++..+++|+..|=.+||++......+-.-.+.+.+ +.++=..+....+|+++....+..--.+.+--
T Consensus 12 v~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLavk~iAipg 91 (408)
T COG4651 12 VGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVKAIAIPG 91 (408)
T ss_pred HHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhHHHHhcch
Confidence 34567788899999999999999999999998743111111222222 33444445556889999988775322221111
Q ss_pred HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhHHHH
Q 036333 398 VILVITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEF 436 (527)
Q Consensus 398 ~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~~ 436 (527)
.+.-+..-..-.+...+..|++.-..+..|+.++.-+++
T Consensus 92 Al~qia~at~lg~gL~~~lgws~~~glvfGlaLS~aSTV 130 (408)
T COG4651 92 ALAQIALATLLGMGLSSLLGWSFGTGIVFGLALSVASTV 130 (408)
T ss_pred HHHHHHHHHHHHhHHHHHcCCCcccceeeeehhhhHHHH
Confidence 111111222333444566777777778888877766654
No 87
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=83.93 E-value=20 Score=34.19 Aligned_cols=107 Identities=15% Similarity=0.197 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---CCchHHHHHHHHHHhCCCCC---cCCCchHHHHHHHHHHHH-------HHHHHHh
Q 036333 95 LISDLVVVIVFATCGGIAFACA---GQPVITGYLLAGSIIGPGGF---NFVSEMVQVETVAQFGVI-------FLLFALG 161 (527)
Q Consensus 95 li~~l~lil~~a~~~~~l~~rl---~lP~iig~IlaGilLGPs~L---~~i~~~~~~~~l~~lgl~-------~llF~~G 161 (527)
++....++=+.-++..++.||+ |++.---.|+.|+++.-.+= |--+....+..++-+|++ |-.-.-.
T Consensus 14 Li~aFa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~gG~~TgG~kGlaDi~lfsGiglmGGaMlRDfAIvaTA 93 (254)
T TIGR00808 14 LITAFAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVGGVYTGGEKGLADIAIFGGFGLMGGAMLRDLAIVATA 93 (254)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHcccccCCccccchhhhhcchhhhhhHHHHHHHHHHHh
Confidence 4455566666667777788876 66766667888888864210 111111223333333321 2344567
Q ss_pred hcCCchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 036333 162 LEFSTTKLRVVRAVAVLGGLLQIFLFMFLCGITALLFGIK 201 (527)
Q Consensus 162 le~d~~~lr~~~~~~~~~~~~~~~l~~~~~~~~~~~lg~~ 201 (527)
.|.|.+++||.+..-..--++++++|+.++..+++.+|..
T Consensus 94 f~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~ 133 (254)
T TIGR00808 94 FEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYR 133 (254)
T ss_pred hcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7899999999988777777788889999998888888763
No 88
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=83.86 E-value=12 Score=39.22 Aligned_cols=103 Identities=13% Similarity=0.138 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCC-cchhhHHHhHHhH-HHHHHHHH-HHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 036333 342 GSFAAGVMISTT-DLAQHTLEQIEPI-RNMFAALF-LASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKGFGY 418 (527)
Q Consensus 342 gafvaGl~l~~~-~~~~~l~~~l~~~-~~~f~plF-F~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~~~~~ 418 (527)
....+|....+. -..++-.+.+..+ ..+++|.+ |..++-..+...+.+.|...+... +..+.-.+..++..+.++.
T Consensus 11 ~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 89 (385)
T PF03547_consen 11 LIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAF-IIFILGLLLGFLLSRLFRL 89 (385)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHhcCC
Confidence 334455555543 2345556677776 47999998 777776665555554433322222 2222334455556666666
Q ss_pred ChHHHH--HHHHHHhhHHHHHHHHHHHHh
Q 036333 419 NNKTSV--LVGMSLAQIGEFAFVLLSRSS 445 (527)
Q Consensus 419 ~~~~~~--~lgl~l~~rG~~~lvl~~~a~ 445 (527)
+.+++. ..+...+.-|-+.+-+.....
T Consensus 90 ~~~~~~~~~~~~~~~N~~~lglpi~~~l~ 118 (385)
T PF03547_consen 90 PKEWRGVFVLAASFGNTGFLGLPILQALF 118 (385)
T ss_pred CcccceEEEecccCCcchhhHHHHHHHHh
Confidence 655543 333334555666665554433
No 89
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=83.76 E-value=55 Score=33.48 Aligned_cols=135 Identities=16% Similarity=0.153 Sum_probs=87.3
Q ss_pred hhHHHHHHHHHHHhcCC--cchhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 036333 337 LSLELGSFAAGVMISTT--DLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVK 414 (527)
Q Consensus 337 ~s~~lgafvaGl~l~~~--~~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~ 414 (527)
.++.+=+.++|+++.-. +..+-+.+.++.+.+...|+-...+|+.++.......+.........-.+.-++.++....
T Consensus 181 ~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~~~~~~ 260 (321)
T TIGR00946 181 KFPPLWAPLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVMAGISK 260 (321)
T ss_pred hCCChHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777632 3456778888889999999999999999987766544444444455555666666677777
Q ss_pred hcCCChHH--HHHHHHHHhhHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHhhhhhHHHHhh
Q 036333 415 GFGYNNKT--SVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKL 475 (527)
Q Consensus 415 ~~~~~~~~--~~~lgl~l~~rG~~~lvl~~~a~~~g~i~~~~~~~lv~~~~ls~l~~p~l~~~ 475 (527)
..+.+..+ ...+-. -.|-+....+++ .+.|.-.+..-..+..++++|.++-|++..+
T Consensus 261 ~~~l~~~~~~~~vl~a-a~P~a~~~~i~A---~~y~~~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 261 LIGLRGLELSVAILQA-ALPGGAVAAVLA---TEYEVDVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred HhCCChHHHHHHHHHH-cCChhhHHHHHH---HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766433 222222 234444444443 4555444555555667888999999987654
No 90
>PRK09903 putative transporter YfdV; Provisional
Probab=83.45 E-value=25 Score=35.94 Aligned_cols=133 Identities=9% Similarity=0.042 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHhc--CCcchhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 036333 338 SLELGSFAAGVMIS--TTDLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKG 415 (527)
Q Consensus 338 s~~lgafvaGl~l~--~~~~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~~ 415 (527)
++.+-+.++|+++. +-+..+.+.+.++.+.+...|+-...+|+++........+. .....+.-.+.-++.++.....
T Consensus 173 nP~iia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~~~-~~~~~~~Kli~~P~i~~~~~~~ 251 (314)
T PRK09903 173 EPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAE-IAYNTFLKLILMPLALLLVGMA 251 (314)
T ss_pred chHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666554 33556678888889999999999999999886544322221 2222333444445566666666
Q ss_pred cCCChHHH--HHHHHHHhhHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHhhhhhHHHHhh
Q 036333 416 FGYNNKTS--VLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKL 475 (527)
Q Consensus 416 ~~~~~~~~--~~lgl~l~~rG~~~lvl~~~a~~~g~i~~~~~~~lv~~~~ls~l~~p~l~~~ 475 (527)
++.+..+. ..+-. -.|-+....+++ .+.|.-.+..-..+..++++|.++-|++..+
T Consensus 252 ~~l~~~~~~v~vl~a-a~P~a~~~~i~A---~~y~~~~~~aa~~v~~sTlls~iTlpl~~~l 309 (314)
T PRK09903 252 CHLNSEHLQMMVLAG-ALPPAFSGIIIA---SRFNVYTRTGTASLAVSVLGFVVTAPLWIYV 309 (314)
T ss_pred cCCCcHHHHHHHHHH-cccHHHHHHHHH---HHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67764332 12211 245555555554 3445333333344446788899999988765
No 91
>PRK03818 putative transporter; Validated
Probab=83.29 E-value=16 Score=40.77 Aligned_cols=101 Identities=18% Similarity=0.202 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhCCCCCcC----CCchHHHHHHHHHHHHHHHHHHhhcCCchHHHH----hhhHHHHHHHHHHHHHHHHHH
Q 036333 121 ITGYLLAGSIIGPGGFNF----VSEMVQVETVAQFGVIFLLFALGLEFSTTKLRV----VRAVAVLGGLLQIFLFMFLCG 192 (527)
Q Consensus 121 iig~IlaGilLGPs~L~~----i~~~~~~~~l~~lgl~~llF~~Gle~d~~~lr~----~~~~~~~~~~~~~~l~~~~~~ 192 (527)
.-|.+++|+++|-.+-.. .-+......+.++|+.+++..+|++--.+-+.. .+......+++-.++|.+++.
T Consensus 403 ~~G~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~~~~~~ 482 (552)
T PRK03818 403 AGGPLIVALILGRIGSIGKLYWFMPPSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVPLLIVG 482 (552)
T ss_pred chHHHHHHHHHHhccCCCCceeecCHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 467999999999643211 113345678999999999999999988775443 355566667777777777777
Q ss_pred HHH-HHhcCChHHHHHHHHHH-hhccHHHHHHH
Q 036333 193 ITA-LLFGIKLSEGIFVGTFL-SMSSTAVVLKF 223 (527)
Q Consensus 193 ~~~-~~lg~~~~~al~lg~~l-s~TS~~vv~~~ 223 (527)
+++ +++++++. ..+|++. +.|++|.....
T Consensus 483 ~~~~~~~~~~~~--~~~G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 483 ILARMLAKMNYL--TLCGMLAGSMTDPPALAFA 513 (552)
T ss_pred HHHHHHHcCCHH--HHHHHHhccCCCcHHHHHH
Confidence 775 67787653 5555443 56888877555
No 92
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=82.04 E-value=24 Score=31.79 Aligned_cols=30 Identities=7% Similarity=0.064 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCchH
Q 036333 92 DLRLISDLVVVIVFATCGGIAFACAGQPVI 121 (527)
Q Consensus 92 d~~li~~l~lil~~a~~~~~l~~rl~lP~i 121 (527)
.++++.|+.+++.+..+...+.+-+++|-+
T Consensus 6 ~~~~l~ql~ill~~~~lGe~i~~ll~lPiP 35 (141)
T PRK04125 6 VYSFLHQAFIFAAIMLISNIIASFLPIPMP 35 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 346778999999999999999998887754
No 93
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=80.04 E-value=45 Score=34.72 Aligned_cols=103 Identities=16% Similarity=0.154 Sum_probs=62.2
Q ss_pred HHHHHhc-CCchHHHHHHHHHHhCCCCCcCCCchH-----HHH-HHHHHHHHHHHHHHhhc-CCchHHHHhh-hHHHHHH
Q 036333 110 GIAFACA-GQPVITGYLLAGSIIGPGGFNFVSEMV-----QVE-TVAQFGVIFLLFALGLE-FSTTKLRVVR-AVAVLGG 180 (527)
Q Consensus 110 ~~l~~rl-~lP~iig~IlaGilLGPs~L~~i~~~~-----~~~-~l~~lgl~~llF~~Gle-~d~~~lr~~~-~~~~~~~ 180 (527)
+.+++.+ ++|..+-+++.|+++-- +|++++.. +.. .+..--...+++-.|+. .|++.+-+.. ..-+.+.
T Consensus 195 g~l~~~~~~Ih~~v~mII~~vi~k~--~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vvii 272 (347)
T TIGR00783 195 GGLLKSFPGIPAYAFMILIAAALKA--FGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVIC 272 (347)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhH
Confidence 3344444 68999999999999985 45666421 232 33333334456667886 8999998877 3334444
Q ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHH-HHHHhh
Q 036333 181 LLQIFLFMFLCGITALLFGIKLSEGIFV-GTFLSM 214 (527)
Q Consensus 181 ~~~~~l~~~~~~~~~~~lg~~~~~al~l-g~~ls~ 214 (527)
+..++...+.+++++.++|+-+.++... |.|.+.
T Consensus 273 v~~Vlg~ii~s~lvGKllG~YPiE~aItagLC~~~ 307 (347)
T TIGR00783 273 LSVVVAMILGGAFLGKLMGMYPVESAITAGLCNSG 307 (347)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHhhhccC
Confidence 4444433344446678889866555544 446554
No 94
>PRK09903 putative transporter YfdV; Provisional
Probab=79.79 E-value=59 Score=33.22 Aligned_cols=109 Identities=15% Similarity=0.183 Sum_probs=62.3
Q ss_pred hcCCchHHHHHHHHHHhCCCCCcCCCc-hHHHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHHHHHHHHH-HHHHHHHH
Q 036333 115 CAGQPVITGYLLAGSIIGPGGFNFVSE-MVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQI-FLFMFLCG 192 (527)
Q Consensus 115 rl~lP~iig~IlaGilLGPs~L~~i~~-~~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~~~~~~~~-~l~~~~~~ 192 (527)
-++-|.+++.++ |+++.-.++...+. .+.++.+++....+-||..|..++....+..+ ..+...+.-. +.|.+. .
T Consensus 170 ~~~nP~iia~~~-gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~~-~~~~~~~~Kli~~P~i~-~ 246 (314)
T PRK09903 170 AAKEPVVWAPVL-ATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSA-EIAYNTFLKLILMPLAL-L 246 (314)
T ss_pred HHhchHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccH-HHHHHHHHHHHHHHHHH-H
Confidence 356688877654 55555444433222 34688899999999999999988766554433 3333333333 345433 3
Q ss_pred HHHHHhcCChHHHHHHHHHHhhccHHHHHHHHhhc
Q 036333 193 ITALLFGIKLSEGIFVGTFLSMSSTAVVLKFLMEK 227 (527)
Q Consensus 193 ~~~~~lg~~~~~al~lg~~ls~TS~~vv~~~L~e~ 227 (527)
....+++.+. ...-...+.+..-+++...++.++
T Consensus 247 ~~~~~~~l~~-~~~~v~vl~aa~P~a~~~~i~A~~ 280 (314)
T PRK09903 247 LVGMACHLNS-EHLQMMVLAGALPPAFSGIIIASR 280 (314)
T ss_pred HHHHHcCCCc-HHHHHHHHHHcccHHHHHHHHHHH
Confidence 3334556653 233444555555566666666654
No 95
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=78.93 E-value=39 Score=34.82 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHH
Q 036333 368 NMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSR 443 (527)
Q Consensus 368 ~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~~~lvl~~~ 443 (527)
+++-|+-|.-+|..+|+..+..++...+.- ..-=.-+..++..+...|++.+|+..+|..=+.-|-.++.+.+.
T Consensus 69 ~l~P~LIF~GIGAmtDFgpllanP~~~llG--aaAQ~Gif~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~ 142 (360)
T PF03977_consen 69 GLFPPLIFMGIGAMTDFGPLLANPKTLLLG--AAAQFGIFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSK 142 (360)
T ss_pred chhhHHHHHHHhHHHhhHHHHhCHHHHHHH--HHHHHhHHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHh
Confidence 588888899999999998887655442221 11112234555666677999999999998766667666666653
No 96
>COG3329 Predicted permease [General function prediction only]
Probab=78.74 E-value=42 Score=34.11 Aligned_cols=121 Identities=17% Similarity=0.104 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHhcCCcchhhHHHhHHhHHHHHHHHHHHHhccc----cchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 036333 337 LSLELGSFAAGVMISTTDLAQHTLEQIEPIRNMFAALFLASIGML----IHVHFLWNHIDILLASVILVITIKTIIVFTV 412 (527)
Q Consensus 337 ~s~~lgafvaGl~l~~~~~~~~l~~~l~~~~~~f~plFF~~iGl~----i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l~ 412 (527)
+++.+.-|..|++++..+..-++-+ .+...+.-.....+|.+ +..+.+..........+...++.-++..++.
T Consensus 16 ~sP~llFf~~Gmlia~~ksdl~iP~---~i~~~lslyLL~aIG~kGGveir~snl~a~v~~~~~~~aL~~li~~ia~f~l 92 (372)
T COG3329 16 LSPTLLFFILGMLIAAFKSDLEIPE---AIYQALSLYLLLAIGFKGGVEIRNSNLTAMVLPVALGVALGFLIVFIAYFLL 92 (372)
T ss_pred ccchHHHHHHHHHHHHHhccccCch---HHHHHHHHHHHHHHhcccceeeecCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888888999998874311111111 12211112223344544 3333333322223333444555667777777
Q ss_pred HhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Q 036333 413 VKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLG 460 (527)
Q Consensus 413 ~~~~~~~~~~~~~lgl~l~~rG~~~lvl~~~a~~~g~i~~~~~~~lv~ 460 (527)
.++.+++..|+...+-.-+..+.+.+..+....+.--+.-+-|...+.
T Consensus 93 ~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A~l 140 (372)
T COG3329 93 RKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPAML 140 (372)
T ss_pred HHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence 888899999999998777777777777776666655566666665544
No 97
>PRK10711 hypothetical protein; Provisional
Probab=77.92 E-value=33 Score=33.61 Aligned_cols=104 Identities=9% Similarity=0.092 Sum_probs=71.3
Q ss_pred hHHhHH-HHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHH
Q 036333 362 QIEPIR-NMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVL 440 (527)
Q Consensus 362 ~l~~~~-~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~~~lvl 440 (527)
-+.|-. .+-.|+|= +.+.+.++|..++..+.+..+.-+...++.++.+|.+.. +..+|.+|....=+.
T Consensus 65 lLgPAtVALAvPLY~-------q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~----~~~Sl~pkSVTtPIA 133 (231)
T PRK10711 65 LLQPAVVALAFPLYE-------QLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPE----IAASILPKSVTTPIA 133 (231)
T ss_pred hhhHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhhhhhHHHH
Confidence 444432 45566651 345566677666666666667778888888999998744 344579999888888
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHhhhhhHHHHhhh
Q 036333 441 LSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKLI 476 (527)
Q Consensus 441 ~~~a~~~g~i~~~~~~~lv~~~~ls~l~~p~l~~~~ 476 (527)
...+.+.|-+..-.-..++.+=++-.+++|.+.++.
T Consensus 134 m~is~~iGG~~sLta~~ViitGi~Ga~~g~~llk~~ 169 (231)
T PRK10711 134 MAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAM 169 (231)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888888877665554445555566777888887775
No 98
>PRK01658 holin-like protein; Validated
Probab=77.89 E-value=44 Score=29.36 Aligned_cols=98 Identities=18% Similarity=0.260 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHH---HHHHHHHhCCCCCcCCCchHHHHH-----HHHHHHHHHHHHHhhcC
Q 036333 93 LRLISDLVVVIVFATCGGIAFACAGQPVITG---YLLAGSIIGPGGFNFVSEMVQVET-----VAQFGVIFLLFALGLEF 164 (527)
Q Consensus 93 ~~li~~l~lil~~a~~~~~l~~rl~lP~iig---~IlaGilLGPs~L~~i~~~~~~~~-----l~~lgl~~llF~~Gle~ 164 (527)
++.+.|+.+++.+......+.+-+++|-+-+ .++-=+.+ ..+.++. ++++. +.++++.|+==.+|+=-
T Consensus 4 ~~~l~~l~il~~~~~~G~~i~~~l~lpiPGsViGmlLL~~~L---~~~~ik~-~~v~~~a~~Ll~~m~llFVPa~VGi~~ 79 (122)
T PRK01658 4 VKLLVQIALLYVFALVGTWIQEQLHLPIPGSIIGIFLLLLLL---SFKILKL-KWIELGAETLLAELPLFFIPSAVGVMN 79 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---HhCCcCH-HHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3567889999999888888888777764432 22111111 1122221 22333 23334444434455555
Q ss_pred CchHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 036333 165 STTKLRVVRAVAVLGGLLQIFLFMFLCGIT 194 (527)
Q Consensus 165 d~~~lr~~~~~~~~~~~~~~~l~~~~~~~~ 194 (527)
..+.+++++...+...++++++.+.+++.+
T Consensus 80 ~~~ll~~~~~~il~~ivvsT~l~l~vtg~~ 109 (122)
T PRK01658 80 YGDFLSSKGISLFLVVVISTFVVMIVTGYL 109 (122)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666555555555555555544443
No 99
>COG2985 Predicted permease [General function prediction only]
Probab=76.85 E-value=10 Score=40.88 Aligned_cols=100 Identities=14% Similarity=0.173 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHhCCCCCcCCC------chHHHHHHHHHHHHHHHHHHhhcCCch---HHHHhhhHHHHHHHHHHHHHHHH
Q 036333 120 VITGYLLAGSIIGPGGFNFVS------EMVQVETVAQFGVIFLLFALGLEFSTT---KLRVVRAVAVLGGLLQIFLFMFL 190 (527)
Q Consensus 120 ~iig~IlaGilLGPs~L~~i~------~~~~~~~l~~lgl~~llF~~Gle~d~~---~lr~~~~~~~~~~~~~~~l~~~~ 190 (527)
..-|.+++|++||-. +.+. +......+.++|+.++|=.+|++---+ .+-..+-.....+.+-.++|.+.
T Consensus 397 ~aGGpLivaLiLG~i--g~iGpl~w~mP~~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~vp~i~ 474 (544)
T COG2985 397 NAGGPLIVALILGFI--GAIGPLTWFMPPGALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLVPVII 474 (544)
T ss_pred ccccHHHHHHHHHHh--cccCceEEEcChhHHHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHHHHHHHH
Confidence 445788999998842 2222 344678899999888777777764433 22223334445555556677777
Q ss_pred HHHHH-HHhcCChHHHHHHHHHH-hhccHHHHHHH
Q 036333 191 CGITA-LLFGIKLSEGIFVGTFL-SMSSTAVVLKF 223 (527)
Q Consensus 191 ~~~~~-~~lg~~~~~al~lg~~l-s~TS~~vv~~~ 223 (527)
+++++ +++.++| ....|++. ++|++|...-.
T Consensus 475 ~~llg~~v~kmn~--~~l~G~laGs~T~ppaLa~a 507 (544)
T COG2985 475 VFLLGRYVLKMNW--LLLCGALAGSMTDPPALAFA 507 (544)
T ss_pred HHHHHHHHHhccH--HHHhhHHhcCCCChHHHHHH
Confidence 88776 5666665 44555554 55777666443
No 100
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=76.64 E-value=51 Score=34.37 Aligned_cols=105 Identities=22% Similarity=0.252 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCchH--HHHHHHHHHhCCCCCcCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHH
Q 036333 99 LVVVIVFATCGGIAFACAGQPVI--TGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVA 176 (527)
Q Consensus 99 l~lil~~a~~~~~l~~rl~lP~i--ig~IlaGilLGPs~L~~i~~~~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~ 176 (527)
+.+.+..+.+.+.+.+++|+|.. .+.++.|.++--.+ +. +.+.=+-+..++-.++--..|.++|...+++..|..
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~-~~--~~~lP~wl~~va~~~iG~~IG~~f~~~~l~~~~r~~ 266 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGG-GI--TIQLPAWLLAVAQALIGALIGSRFDRSILREAKRLL 266 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhccc-ce--eeeCCHHHHHHHHHHHHHHHcccccHHHHHHhHhhc
Confidence 56666777788888898888764 44455555444322 11 111112233556667778899999999998876654
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHhcCChHHHH
Q 036333 177 VLGGLLQIF---LFMFLCGITALLFGIKLSEGI 206 (527)
Q Consensus 177 ~~~~~~~~~---l~~~~~~~~~~~lg~~~~~al 206 (527)
..+-+..+. .....++++.++.+.++.++.
T Consensus 267 ~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~ 299 (352)
T COG3180 267 PAILVSIIALMAIAAGMAGLLSWLTGIDLNTAY 299 (352)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 433332222 222223334455677775544
No 101
>PRK01821 hypothetical protein; Provisional
Probab=76.14 E-value=49 Score=29.55 Aligned_cols=102 Identities=9% Similarity=0.112 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCcCCCchHHHHH-----HHHHHHHHHHHHHhhcCCc
Q 036333 92 DLRLISDLVVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVET-----VAQFGVIFLLFALGLEFST 166 (527)
Q Consensus 92 d~~li~~l~lil~~a~~~~~l~~rl~lP~iig~IlaGilLGPs~L~~i~~~~~~~~-----l~~lgl~~llF~~Gle~d~ 166 (527)
-++.+.|+.+++.+..+...+.+-+++|-+-+-+-.-+++.-...+.++. +.++. +.++++.|+==.+|+=-..
T Consensus 8 ~~~~l~~l~ill~~~~~Ge~i~~~l~lpiPGsViGmlLLf~~L~~~~vk~-~~v~~~a~~LL~~m~LfFVPa~VGim~~~ 86 (133)
T PRK01821 8 IWQYLRAFVLIYACLYAGIFIASLLPITIPGSIIGMLILFVLLALQILPA-KWVKPGCSLLIRYMALLFVPIGVGVMQYY 86 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhCCcCH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 35678899999999999999998888764432111111111111123222 22333 2333444444445555555
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 036333 167 TKLRVVRAVAVLGGLLQIFLFMFLCGIT 194 (527)
Q Consensus 167 ~~lr~~~~~~~~~~~~~~~l~~~~~~~~ 194 (527)
+.+++++...+..-++++++.+.+++.+
T Consensus 87 ~ll~~~~~~il~~ivvST~lvl~vtg~~ 114 (133)
T PRK01821 87 DLLRAQFGPIVVSCIVSTLVVLLVVGWS 114 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666555555555555555444443
No 102
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=75.72 E-value=31 Score=35.49 Aligned_cols=91 Identities=18% Similarity=0.276 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhCCCCCcCCCchHHHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHHHHHHHHHHHHHH---HHHHHHHH
Q 036333 121 ITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMF---LCGITALL 197 (527)
Q Consensus 121 iig~IlaGilLGPs~L~~i~~~~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~~~~~~~~~l~~~---~~~~~~~~ 197 (527)
++|-++.|.+-||.+...+++ .++.+=.=.+.++|...|++-- +++++.++..+.....+++.|.+ ++..++++
T Consensus 183 LlGgliIG~~~g~~g~~~i~p--f~~~lF~G~L~lFLLeMGl~A~-~rL~~l~~~g~~li~Fgi~~Pli~a~ig~~lg~~ 259 (327)
T PF05982_consen 183 LLGGLIIGFLAGPEGVESIKP--FFVDLFKGVLCLFLLEMGLVAA-RRLRDLRKVGWFLIAFGILMPLINALIGIGLGWL 259 (327)
T ss_pred HHHHHHHhheeCccchhhccc--hhhccHHHHHHHHHHHhhHHHH-HhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888876555443 2333334456677888888642 34444444444444555555654 33445678
Q ss_pred hcCChHHHHHHHHHHhh
Q 036333 198 FGIKLSEGIFVGTFLSM 214 (527)
Q Consensus 198 lg~~~~~al~lg~~ls~ 214 (527)
+|.+...+.+++...+.
T Consensus 260 ~gls~Gg~~llavLaAS 276 (327)
T PF05982_consen 260 LGLSPGGAVLLAVLAAS 276 (327)
T ss_pred hCCCCccHHHHHHHHhh
Confidence 89888777777655543
No 103
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=72.44 E-value=91 Score=33.31 Aligned_cols=143 Identities=15% Similarity=0.157 Sum_probs=77.0
Q ss_pred HhChhHHHHHHHHHHHhcCCcchhhHHHhHHhH------HHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHH
Q 036333 334 KLGLSLELGSFAAGVMISTTDLAQHTLEQIEPI------RNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTI 407 (527)
Q Consensus 334 ~lg~s~~lgafvaGl~l~~~~~~~~l~~~l~~~------~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~ 407 (527)
++|....+.-|....++-..-..+...+.++.+ -+|+....-+..=+.+|-..+.+...-.+..++...++-.+
T Consensus 57 yiGGg~il~~f~ps~Lv~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~ 136 (414)
T PF03390_consen 57 YIGGGAILCIFVPSALVYFGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFL 136 (414)
T ss_pred cCChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555565566665555443444455555554 34666555555545566655555443334444455556667
Q ss_pred HHHHHHhhcCCChHHHHHH-HHH-H-hhHHHHHHHHHH-HHhhCCCCcHHHHHHHHHHH----HHhhhhhHHHHhhh
Q 036333 408 IVFTVVKGFGYNNKTSVLV-GMS-L-AQIGEFAFVLLS-RSSNLHLVEGKLYLLLLGTT----ALSLVTTPLLFKLI 476 (527)
Q Consensus 408 ~~~l~~~~~~~~~~~~~~l-gl~-l-~~rG~~~lvl~~-~a~~~g~i~~~~~~~lv~~~----~ls~l~~p~l~~~~ 476 (527)
.+.++...+|++.+|+++. .+= | +..|+-.+=+.. ++...|.-+++.|+.++-.+ +++.+.+.++.++-
T Consensus 137 ~g~lvG~l~G~~~~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg 213 (414)
T PF03390_consen 137 LGGLVGMLFGYSFKDAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQDAEEYFSQLIPALTLGNIFAIIFAGLLNKLG 213 (414)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhhhcCCCccccHhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777788899999998643 211 1 112222222222 22233555566666666444 44556677777765
No 104
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=72.37 E-value=58 Score=31.82 Aligned_cols=104 Identities=13% Similarity=0.096 Sum_probs=68.7
Q ss_pred hHHhH-HHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHH
Q 036333 362 QIEPI-RNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVL 440 (527)
Q Consensus 362 ~l~~~-~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~~~lvl 440 (527)
-++|- ..+-.|+|= +.+.+.++|..++..+.+..+.-+...++.++.+|.+.. . ..++.+|....=+.
T Consensus 64 lLgPAtVALAvPLY~-------~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~--i--~~Sl~pkSvTtpiA 132 (226)
T TIGR00659 64 LLGPAVVALAIPLYK-------QLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPE--I--IASLLPKSVTTPIA 132 (226)
T ss_pred hhHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--H--HHHhhhHHhhHHHH
Confidence 44443 245666651 345566666656655556666677888888899998733 2 33579999888888
Q ss_pred HHHHhhCCCCcHHHHHHHHHHHHHhhhhhHHHHhhh
Q 036333 441 LSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKLI 476 (527)
Q Consensus 441 ~~~a~~~g~i~~~~~~~lv~~~~ls~l~~p~l~~~~ 476 (527)
...+.+.|-...-.-..++.+=++-.+++|.+.++.
T Consensus 133 m~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 133 MHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVLRYF 168 (226)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 888888877655444444455566667777777765
No 105
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=72.30 E-value=49 Score=29.35 Aligned_cols=101 Identities=12% Similarity=0.160 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCcCCCchHHHHH-----HHHHHHHHHHHHHhhcCCch
Q 036333 93 LRLISDLVVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVET-----VAQFGVIFLLFALGLEFSTT 167 (527)
Q Consensus 93 ~~li~~l~lil~~a~~~~~l~~rl~lP~iig~IlaGilLGPs~L~~i~~~~~~~~-----l~~lgl~~llF~~Gle~d~~ 167 (527)
.+++.|+.+++.+.++..++.+-+++|-+-+-+-.-++..-...+.++ .+.+|. ++++++.|+==.+|.--..+
T Consensus 5 ~~~~~q~~ii~~~~~~G~~i~~~l~lplPGsIiGmvLLfllL~~~iv~-l~wv~~~a~~Ll~~m~llFVPa~VgVm~y~~ 83 (128)
T COG1380 5 MQILRQLAIILGFLFLGEWIASLLHLPLPGSIIGMVLLFLLLALKIVK-LEWVERGATFLLRNMALLFVPAGVGVMNYFD 83 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHhCCcc-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 357789999999999999999988877543321111111111122332 122222 33333333333445444555
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 036333 168 KLRVVRAVAVLGGLLQIFLFMFLCGIT 194 (527)
Q Consensus 168 ~lr~~~~~~~~~~~~~~~l~~~~~~~~ 194 (527)
.++..+.+.+.....+.++.+.+++.+
T Consensus 84 ~l~~~~~~Il~~~iiST~lv~~vtg~~ 110 (128)
T COG1380 84 LLAADGLPILVVIIISTLLVLLVTGWV 110 (128)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 566666665555555555555555544
No 106
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=71.14 E-value=57 Score=31.65 Aligned_cols=89 Identities=17% Similarity=0.168 Sum_probs=61.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Q 036333 384 VHFLWNHIDILLASVILVITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTA 463 (527)
Q Consensus 384 ~~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~~~lvl~~~a~~~g~i~~~~~~~lv~~~~ 463 (527)
.+.+.++|..++..+.+..+.-+..+++.++.+|.+.. +..++.+|....=+......+.|-...-.-..++.+=+
T Consensus 70 ~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~----~~~Sl~pkSVTtpiAi~is~~iGG~~sLta~~VvitGi 145 (215)
T PF04172_consen 70 RRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPE----IILSLAPKSVTTPIAIEISEQIGGIPSLTAVFVVITGI 145 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHHHHHhhHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 35566666666666666667778888888899998754 33457899988878888888887766544444444555
Q ss_pred HhhhhhHHHHhhh
Q 036333 464 LSLVTTPLLFKLI 476 (527)
Q Consensus 464 ls~l~~p~l~~~~ 476 (527)
+..+++|.+.++.
T Consensus 146 ~Ga~~g~~llk~~ 158 (215)
T PF04172_consen 146 LGAVLGPPLLKLL 158 (215)
T ss_pred HHHHhHHHHHhHc
Confidence 5666777777764
No 107
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=65.24 E-value=1.4e+02 Score=33.31 Aligned_cols=74 Identities=8% Similarity=0.155 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh---------hcCCChHHHHHHHHHHhhHHHH
Q 036333 366 IRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVK---------GFGYNNKTSVLVGMSLAQIGEF 436 (527)
Q Consensus 366 ~~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~---------~~~~~~~~~~~lgl~l~~rG~~ 436 (527)
+-.+++|.-..-.|..++.+.+.+++..++.+.+..++.-.+.+-...+ ..++++.+++.+|..+++-.-+
T Consensus 68 f~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPV 147 (559)
T TIGR00840 68 FFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPV 147 (559)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchH
Confidence 3456677776688999999998877654433332222222222211111 1356999999999999988866
Q ss_pred HHH
Q 036333 437 AFV 439 (527)
Q Consensus 437 ~lv 439 (527)
+..
T Consensus 148 AVl 150 (559)
T TIGR00840 148 AVL 150 (559)
T ss_pred HHH
Confidence 554
No 108
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=62.92 E-value=2e+02 Score=30.16 Aligned_cols=75 Identities=12% Similarity=0.129 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHHH
Q 036333 368 NMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLSR 443 (527)
Q Consensus 368 ~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~~~lvl~~~ 443 (527)
+++-|+-|.-+|..+|++.+..++...+..-..+=++ +..++..+...|++.+|+..+|..=+.-|-.++.+.+.
T Consensus 105 gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~G-iF~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s~k 179 (399)
T TIGR03136 105 SLVACILFFGIGAMSDISFILARPWASITVALFAEMG-TFATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFASLI 179 (399)
T ss_pred ccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhh-HHHHHHHHHHcCCCHHHhhHHhhcccCCccHHHHHHHh
Confidence 5888888999999999988876554333311111122 23344555667999999999998766777666666553
No 109
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=62.83 E-value=1.6e+02 Score=28.93 Aligned_cols=106 Identities=14% Similarity=0.133 Sum_probs=75.6
Q ss_pred HHhHHhHH-HHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHH
Q 036333 360 LEQIEPIR-NMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAF 438 (527)
Q Consensus 360 ~~~l~~~~-~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~~~l 438 (527)
..-+.|-. .+-.|+|= +.+.+.++|..++..+.+..+.-+...+..++++|.+.. +-.++.+|....=
T Consensus 68 ~~lLgPAtVALAvPLY~-------q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~----~~~Sl~pKSVTtP 136 (232)
T PRK04288 68 SFFLEPATIAFAIPLYK-------KRDVLKKYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA----VMASMLPQAATTA 136 (232)
T ss_pred HHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhHhhhHH
Confidence 33455542 46667652 345566777767666667777788888889999998753 3445799998888
Q ss_pred HHHHHHhhCCCCcHHHHHHHHHHHHHhhhhhHHHHhhh
Q 036333 439 VLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKLI 476 (527)
Q Consensus 439 vl~~~a~~~g~i~~~~~~~lv~~~~ls~l~~p~l~~~~ 476 (527)
+...++.+.|-+..-.-..++.+=++-.+++|.+.++.
T Consensus 137 IAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 137 IALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888887776665555666677778888887775
No 110
>KOG3826 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=59.96 E-value=8.8 Score=37.37 Aligned_cols=131 Identities=21% Similarity=0.167 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCch------HHHHHHHHHHhCCCCC--cCCCchHHHHHHHHHHHHHHHHHHhhcCCchH
Q 036333 97 SDLVVVIVFATCGGIAFACAGQPV------ITGYLLAGSIIGPGGF--NFVSEMVQVETVAQFGVIFLLFALGLEFSTTK 168 (527)
Q Consensus 97 ~~l~lil~~a~~~~~l~~rl~lP~------iig~IlaGilLGPs~L--~~i~~~~~~~~l~~lgl~~llF~~Gle~d~~~ 168 (527)
..+.++...+...+.+.+..+.|. .+|++++|.+.=.... +.+........+..+....+.-..|++++.+.
T Consensus 100 ~~~iV~~~lA~~g~~lle~A~~P~~i~l~~aigel~a~fLiiNI~~~~~~~~~~iv~s~l~t~a~~I~~ik~gLgt~~r~ 179 (252)
T KOG3826|consen 100 FGLIVIWGLATDGGFLLELARVPVTIGLPTAIGELLAGFLIINISFVNGAVCAPIVVSPLRTVALTIIKIKAGLGTLPRA 179 (252)
T ss_pred EeeehhhhHhhchHhhHhhccccccccccchHHHHHHHHHheecchhhhceeeeeeehhhhhccchHHHHHhhhcccccc
Confidence 445566677777788877766655 9999999966643211 11112223455667888889999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHH-HHhcCChHHHHHHHHHHhhccHHHHHHHHhhc
Q 036333 169 LRVVRAVAVLGGLLQIFLFMFLCGITA-LLFGIKLSEGIFVGTFLSMSSTAVVLKFLMEK 227 (527)
Q Consensus 169 lr~~~~~~~~~~~~~~~l~~~~~~~~~-~~lg~~~~~al~lg~~ls~TS~~vv~~~L~e~ 227 (527)
+++..+.....++.............. +.+..+|..++..|.+...-+..+..+.....
T Consensus 180 ~~nv~~vc~~~~v~~~~~~a~a~~~~S~~~l~~~ii~~~l~g~v~~~i~~~~~r~~~~h~ 239 (252)
T KOG3826|consen 180 PENVLAVCCVLMVLPSIIEASAPAVTSHFLLAGPIIWAFLLGIVIGSILWRFPRPDYQHT 239 (252)
T ss_pred hhhhhHHHhhhhhhhhhhccccHHHHHHHHhccchHHHhccccceeeeecCCccccchhh
Confidence 998887777665555444433334444 45678999999999988877776666655544
No 111
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=59.43 E-value=70 Score=32.65 Aligned_cols=73 Identities=18% Similarity=0.109 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhCCCCCcCCCc--hHHHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036333 121 ITGYLLAGSIIGPGGFNFVSE--MVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMFLCGITALLF 198 (527)
Q Consensus 121 iig~IlaGilLGPs~L~~i~~--~~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~~~~~~~~~l~~~~~~~~~~~l 198 (527)
.+-.++.|+++|+. ++ .+.+..-...-..|+-|..|-.+|++.+.+.+-.-+.+++..++++.....+...++
T Consensus 174 ~ilPlliG~ilGNL-----D~~~r~fl~~~~~~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~~~~dr~~ 248 (314)
T TIGR00793 174 AVLPFLVGFALGNL-----DPELRDFFSKAVQTLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPLILADKFI 248 (314)
T ss_pred HHHHHHHHHHHhcC-----CHHHHHHhccCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHHh
Confidence 34468899999952 22 123333344666789999999999999988877777777766655555544444445
No 112
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=58.54 E-value=1.4e+02 Score=32.29 Aligned_cols=107 Identities=13% Similarity=0.125 Sum_probs=62.4
Q ss_pred HHHHHHHhChhHHHHHHHHHHHhcCCcchh-hHHH-hHHhH-HHHHHHHHHHHhccccchhhhhHHHHH-HHHHHHHHHH
Q 036333 328 VAWCSDKLGLSLELGSFAAGVMISTTDLAQ-HTLE-QIEPI-RNMFAALFLASIGMLIHVHFLWNHIDI-LLASVILVIT 403 (527)
Q Consensus 328 ~~~~ae~lg~s~~lgafvaGl~l~~~~~~~-~l~~-~l~~~-~~~f~plFF~~iGl~i~~~~l~~~~~~-~l~l~~~~~~ 403 (527)
++.++..+|....+=-...|++......+. +... .+..+ .++.+.+-..--|++.+.+.+....+. +.+.++.+++
T Consensus 22 ~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a~~palsLATlGVl~ 101 (574)
T COG3263 22 SSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVAAGPALSLATLGVLI 101 (574)
T ss_pred HHHHHHHcCchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHHHhhhhHHHHHHHHHH
Confidence 334444555555555555566665432221 1111 22222 455555555567888888887654333 3344455555
Q ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHhhHH
Q 036333 404 IKTIIVFTVVKGFGYNNKTSVLVGMSLAQIG 434 (527)
Q Consensus 404 ~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG 434 (527)
.-.+....+.+.++.+|-|++.+|...+.--
T Consensus 102 Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTD 132 (574)
T COG3263 102 TSGLTGVAAAYLLNLDWLEGLLIGAIVGSTD 132 (574)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHhhcccc
Confidence 5666667778889999999999998765543
No 113
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=55.70 E-value=55 Score=29.99 Aligned_cols=84 Identities=14% Similarity=0.113 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcCC----cchhhHHHh-HHhHHHHHHHHHHHHhccccchhhhh---HHH--HHHHHHHHHHHHHHHHH
Q 036333 339 LELGSFAAGVMISTT----DLAQHTLEQ-IEPIRNMFAALFLASIGMLIHVHFLW---NHI--DILLASVILVITIKTII 408 (527)
Q Consensus 339 ~~lgafvaGl~l~~~----~~~~~l~~~-l~~~~~~f~plFF~~iGl~i~~~~l~---~~~--~~~l~l~~~~~~~K~~~ 408 (527)
..-|+.++|+++++- |..-++.+. .+.++++.+.+|...+|++.-+.++. +.. .......++.++.-.+.
T Consensus 23 ~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~ 102 (154)
T TIGR01625 23 NAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLV 102 (154)
T ss_pred ccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 345788888888753 222233333 33457899999999999999876553 322 22222233333444556
Q ss_pred HHHHHhhcCCChHH
Q 036333 409 VFTVVKGFGYNNKT 422 (527)
Q Consensus 409 ~~l~~~~~~~~~~~ 422 (527)
.++..+.++++...
T Consensus 103 ~~~~~~~~~~~~~~ 116 (154)
T TIGR01625 103 AVALIKLLRINYAL 116 (154)
T ss_pred HHHHHHHhCCCHHH
Confidence 66666788988653
No 114
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=55.18 E-value=92 Score=32.10 Aligned_cols=73 Identities=15% Similarity=0.106 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------ChHHHHHHHHHHhhHHHHHHHHH
Q 036333 368 NMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKGFGY------NNKTSVLVGMSLAQIGEFAFVLL 441 (527)
Q Consensus 368 ~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~~~~~------~~~~~~~lgl~l~~rG~~~lvl~ 441 (527)
+++-|+-|.-+|..+|+..+..++...+.. ..+=+ -+..+++.+...|+ +.+|+..+|..=+.-|-.++.+.
T Consensus 63 ~l~P~LIFlGIGAmtDFgpllanP~~~llG-aaAQ~-GiF~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGPt~If~s 140 (354)
T TIGR01109 63 GIAPLLIFMGIGALTDFGPLLANPRTLLLG-AAAQF-GIFATVFGALTLNFFGIISFSLPQAAAIGIIGGADGPTAIYLS 140 (354)
T ss_pred chHHHHHHHhccHHhhhHHHHhChHHHHHH-HHHHh-hHHHHHHHHHHhCCCcccccChhhceeeeeeccCCCchhhhhH
Confidence 588888899999999998886554322211 11111 12233444455566 67998888876556666665555
Q ss_pred H
Q 036333 442 S 442 (527)
Q Consensus 442 ~ 442 (527)
+
T Consensus 141 ~ 141 (354)
T TIGR01109 141 G 141 (354)
T ss_pred h
Confidence 4
No 115
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=53.34 E-value=1.6e+02 Score=30.29 Aligned_cols=106 Identities=17% Similarity=0.188 Sum_probs=65.9
Q ss_pred HhHHHHHHHHHHHHhccccchhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH---hhHHHHH
Q 036333 364 EPIRNMFAALFLASIGMLIHVHFLW---NHIDILLASVILVITIKTIIVFTVVKGFGYNNKTSVLVGMSL---AQIGEFA 437 (527)
Q Consensus 364 ~~~~~~f~plFF~~iGl~i~~~~l~---~~~~~~l~l~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l---~~rG~~~ 437 (527)
++....+..+.|...|+.+..+.+. .+|...+..+.+-++.=++.++..++.+.+| ..+.+|+.+ +|-|..+
T Consensus 37 ~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~--~~l~~Gl~ll~~~Pggv~S 114 (319)
T COG0385 37 GSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLP--PELAVGLLLLGCCPGGVAS 114 (319)
T ss_pred hHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHhHHheeeCCCchhH
Confidence 3344566666677889999887764 4555566666666777788888888887755 445566543 6677777
Q ss_pred HHHHHHHhhCCCCcHHHHHHHH--HHHHHhhhhhHHHHhhh
Q 036333 438 FVLLSRSSNLHLVEGKLYLLLL--GTTALSLVTTPLLFKLI 476 (527)
Q Consensus 438 lvl~~~a~~~g~i~~~~~~~lv--~~~~ls~l~~p~l~~~~ 476 (527)
.+..+.+. |- -.+++.. ..++++.+++|++.+++
T Consensus 115 ~~~t~lAk--Gn---ValsV~~tsvStll~~f~tPllv~l~ 150 (319)
T COG0385 115 NAMTYLAK--GN---VALSVCSTSVSTLLGPFLTPLLVGLL 150 (319)
T ss_pred HHHHHHhc--Cc---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555553 21 2222222 23466667777777664
No 116
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=52.92 E-value=3e+02 Score=28.97 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCcC----------CCc-------------hHHHHHHHHHHH-
Q 036333 98 DLVVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNF----------VSE-------------MVQVETVAQFGV- 153 (527)
Q Consensus 98 ~l~lil~~a~~~~~l~~rl~lP~iig~IlaGilLGPs~L~~----------i~~-------------~~~~~~l~~lgl- 153 (527)
++..+++...+....-+|--=|.+.-.|-.|+++.+..+.. +++ ...++.+-+.|+
T Consensus 24 ~~vMi~ig~~LiYLai~k~~EPLLLlPigfG~il~NiP~~~~~~g~~~~~~~~~~~~~~~~~~~~~~gg~L~~~~~~gi~ 103 (399)
T TIGR03136 24 RLALIIFGFFLAYLGFKRTLEPLIMVPMGLGMMAVNAGVMFLEAGVIGTLHLDPMVSDPSVLVNLMQINFLQPVYNFTFS 103 (399)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCccccccccccccccccccccccchhccccCCcHHHHHHHHHHh
Confidence 44444444444444445556678888888999888654310 010 012232333332
Q ss_pred -----HHHHHHHhhcCCchHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036333 154 -----IFLLFALGLEFSTTKLRVVRAVAVL-GGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSM 214 (527)
Q Consensus 154 -----~~llF~~Gle~d~~~lr~~~~~~~~-~~~~~~~l~~~~~~~~~~~lg~~~~~al~lg~~ls~ 214 (527)
.++.+-+|--+|+.-+-.+.|..+. .+..++-+. .....+.++|++..+|..+|.+=..
T Consensus 104 ~gl~P~LIFlGIGAMtDFgpllanP~~~ll~gaaAQ~GiF--~t~~~A~~lGF~~~eAAsIgIIGgA 168 (399)
T TIGR03136 104 NSLVACILFFGIGAMSDISFILARPWASITVALFAEMGTF--ATLVIGYYCGLTPGEAAAVGTIGGA 168 (399)
T ss_pred cccHHHHHHHhccHHhcchHHHhChHHHHHHHHHHHhhHH--HHHHHHHHcCCCHHHhhHHhhcccC
Confidence 3466778889999999999888887 455554332 2223345678988888888876554
No 117
>COG0679 Predicted permeases [General function prediction only]
Probab=52.08 E-value=2.8e+02 Score=28.32 Aligned_cols=136 Identities=19% Similarity=0.193 Sum_probs=92.0
Q ss_pred hhHHHHHHHHHHHhcC--CcchhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 036333 337 LSLELGSFAAGVMIST--TDLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHI-DILLASVILVITIKTIIVFTVV 413 (527)
Q Consensus 337 ~s~~lgafvaGl~l~~--~~~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~-~~~l~l~~~~~~~K~~~~~l~~ 413 (527)
.++.+=+.+.|+.+.. -+..+.+.+.++.+.+.-.|+=.+..|+.++........ .........-.+..++..+...
T Consensus 167 ~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~ 246 (311)
T COG0679 167 TNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPLVALLVA 246 (311)
T ss_pred hCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4677777778887773 244556777888889999999999999999985443322 2233333335667788888888
Q ss_pred hhcCCChHHHHHHHHH--HhhHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHhhhhhHHHHhhh
Q 036333 414 KGFGYNNKTSVLVGMS--LAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKLI 476 (527)
Q Consensus 414 ~~~~~~~~~~~~lgl~--l~~rG~~~lvl~~~a~~~g~i~~~~~~~lv~~~~ls~l~~p~l~~~~ 476 (527)
+.++.+.-+. .+... ..|.+....+++ .+.+.-.+...+.+..++.++.++.|......
T Consensus 247 ~~~~l~~~~~-~v~vl~~a~P~A~~~~v~a---~~~~~~~~laa~~i~ist~ls~~t~p~~~~~l 307 (311)
T COG0679 247 KLLGLSGLAL-QVLVLLSAMPTAVNAYVLA---RQYGGDPRLAASTILLSTLLSLLTLPLLILLL 307 (311)
T ss_pred HHcCCChHHH-HHHHHHhhCcHHhHHHHHH---HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9898876554 22222 345555555444 44565566777777788899999998876654
No 118
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=50.88 E-value=1.5e+02 Score=30.91 Aligned_cols=132 Identities=17% Similarity=0.154 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHhcCCc------chhhHHHhHHhHHHHHHHHHHHHhccccchhhhhH--HHHHHHHHHHHHHHHHHHHH
Q 036333 338 SLELGSFAAGVMISTTD------LAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWN--HIDILLASVILVITIKTIIV 409 (527)
Q Consensus 338 s~~lgafvaGl~l~~~~------~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~--~~~~~l~l~~~~~~~K~~~~ 409 (527)
++.+=+.++|+++.-.+ ..+-+.+.++.+.+...|+=...+|..+....... .+......++..++.-++.+
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~ 323 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIG 323 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHH
Confidence 55555566666665331 12556677888888999999889998876433221 12222333555566667777
Q ss_pred HHHHhhcCCChHHHHHHHH-HHhhHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHhhhhhHHH
Q 036333 410 FTVVKGFGYNNKTSVLVGM-SLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLL 472 (527)
Q Consensus 410 ~l~~~~~~~~~~~~~~lgl-~l~~rG~~~lvl~~~a~~~g~i~~~~~~~lv~~~~ls~l~~p~l 472 (527)
+...+.++++......+-+ .-.|-+....+++. ..+.-+++.-..+.++.+++.++.|+.
T Consensus 324 ~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~---~~~~~~~~~s~~~~~~~~~~~~~~~~~ 384 (385)
T PF03547_consen 324 IGIVFLLGLDGDMARVLILQAAMPTAINSFVIAS---LYGLDEEEASSIVFWSTLLSIPTLPLW 384 (385)
T ss_pred HHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777765443221111 12444444444443 345444555555566777777777763
No 119
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=50.47 E-value=3e+02 Score=28.23 Aligned_cols=75 Identities=12% Similarity=0.058 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhcCCcc-hhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHhh
Q 036333 340 ELGSFAAGVMISTTDL-AQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNH---IDILLASVILVITIKTIIVFTVVKG 415 (527)
Q Consensus 340 ~lgafvaGl~l~~~~~-~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~---~~~~l~l~~~~~~~K~~~~~l~~~~ 415 (527)
.+.+.+.|...|.... ...+ +.|........+-|...|++++.+.+.+. |...+......++.=++.++...+.
T Consensus 7 l~~ai~la~~~P~~g~~~~~~--~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l 84 (313)
T PF13593_consen 7 LLLAILLAYLFPAPGAAGGVI--KPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRL 84 (313)
T ss_pred HHHHHHHHHHcCcccccCCcc--chhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778886422 1111 12344444455666677999998887543 3333333333333334444444443
Q ss_pred c
Q 036333 416 F 416 (527)
Q Consensus 416 ~ 416 (527)
.
T Consensus 85 ~ 85 (313)
T PF13593_consen 85 F 85 (313)
T ss_pred h
Confidence 3
No 120
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=48.31 E-value=57 Score=34.13 Aligned_cols=126 Identities=13% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCChHHHHHHHHHHhhHHHHHHHHH
Q 036333 367 RNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKG-----FGYNNKTSVLVGMSLAQIGEFAFVLL 441 (527)
Q Consensus 367 ~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~~-----~~~~~~~~~~lgl~l~~rG~~~lvl~ 441 (527)
.+++=|+-|.-+|..+|+..+..++ ..+.+-..+=++-+.....+..+ .|++.+|+..+|..=+.-|-.++.+.
T Consensus 133 ~gi~P~LIF~GIGAMtDFgpLlanP-~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvs 211 (433)
T PRK15476 133 SGVAPLVIFMGVGAMTDFGPLLANP-RTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLS 211 (433)
T ss_pred cchHHHHHHHhccHHhcchHHhhCH-HHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhH
Q ss_pred HHHhhCCCCcHHHHHHHHHHHHHhhhhhHHHHhhh--hhhhhhhhhhhhcCCCCC
Q 036333 442 SRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKLI--PGVVHLGVLLRWFSPDSS 494 (527)
Q Consensus 442 ~~a~~~g~i~~~~~~~lv~~~~ls~l~~p~l~~~~--p~~~~~~~~~r~~~~~~~ 494 (527)
+.-.. +++..-.-+.-.-+.++-.+-.|+.+.+. ..|+-..++.|...++++
T Consensus 212 skLAP-~Llg~IaVAAYSYMaLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eK 265 (433)
T PRK15476 212 GKLAP-ELLGAIAVAAYSYMALVPLIQPPIMKALTTEKERKIRMVQLRTVSKREK 265 (433)
T ss_pred hhhhh-HhHHHHHHHHHHHHHHHhcccchHHHhccCHHHhCccCCCCCCCCccch
No 121
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=48.29 E-value=57 Score=34.13 Aligned_cols=126 Identities=13% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCChHHHHHHHHHHhhHHHHHHHHH
Q 036333 367 RNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKG-----FGYNNKTSVLVGMSLAQIGEFAFVLL 441 (527)
Q Consensus 367 ~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~~-----~~~~~~~~~~lgl~l~~rG~~~lvl~ 441 (527)
.+++=|+-|.-+|..+|+..+..++ ..+.+-..+=++-+.....+..+ .|++.+|+..+|..=+.-|-.++.+.
T Consensus 133 ~gi~P~LIF~GIGAMtDFgpLlanP-~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvs 211 (433)
T PRK15477 133 SGVAPLVIFMGVGAMTDFGPLLANP-RTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLS 211 (433)
T ss_pred cchHHHHHHHhccHHhcchHHhhCH-HHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhH
Q ss_pred HHHhhCCCCcHHHHHHHHHHHHHhhhhhHHHHhhh--hhhhhhhhhhhhcCCCCC
Q 036333 442 SRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKLI--PGVVHLGVLLRWFSPDSS 494 (527)
Q Consensus 442 ~~a~~~g~i~~~~~~~lv~~~~ls~l~~p~l~~~~--p~~~~~~~~~r~~~~~~~ 494 (527)
+.-.. +++..-.-+.-.-+.++-.+-.|+.+.+. ..|+-..++.|...++++
T Consensus 212 skLAP-~Llg~IaVAAYSYMaLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eK 265 (433)
T PRK15477 212 GKLAP-ELLGAIAVAAYSYMALVPLIQPPIMKALTTEKERKIRMVQLRTVSKREK 265 (433)
T ss_pred hhhhh-HhHHHHHHHHHHHHHHHhcccchHHHhccCHHHhCccCCCCCCCCccch
No 122
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=48.05 E-value=1.6e+02 Score=28.89 Aligned_cols=131 Identities=21% Similarity=0.319 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhCCCCC----cCCCchH--HHHHHHHHHHHHHHHHHhhcCC--chHHHHhhhHHHHHHHHHHHHHHHHHH
Q 036333 121 ITGYLLAGSIIGPGGF----NFVSEMV--QVETVAQFGVIFLLFALGLEFS--TTKLRVVRAVAVLGGLLQIFLFMFLCG 192 (527)
Q Consensus 121 iig~IlaGilLGPs~L----~~i~~~~--~~~~l~~lgl~~llF~~Gle~d--~~~lr~~~~~~~~~~~~~~~l~~~~~~ 192 (527)
++--++.|++++|..+ .++++.+ .-+.+-.+++.+++=-.|...- ++++.+.+...+.--+.- +.+.+++-
T Consensus 24 mlyA~iig~~~~~~~~~~~~k~~~~~~~~~a~~~~~~~ll~l~ak~g~~vGp~i~~i~~aGpALilQE~Gn-lGTillaL 102 (241)
T PF11299_consen 24 MLYALIIGMALGPQKLKPLKKIISEKEMKFAGKLVGIALLPLIAKLGTTVGPNIPKILSAGPALILQEFGN-LGTILLAL 102 (241)
T ss_pred HHHHHHHHHHhcchhhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHhhHHHHHHHhcc-hhhHHHHh
Confidence 3344677888888776 4444333 2344444455555544555443 335555555443332222 23333333
Q ss_pred HHHHHhcCChHHHHHHHHHHhhccHHHHHHHHhhccccCCchhHHHHHHHHHhhHHHHHHHHHH
Q 036333 193 ITALLFGIKLSEGIFVGTFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALL 256 (527)
Q Consensus 193 ~~~~~lg~~~~~al~lg~~ls~TS~~vv~~~L~e~~~~~s~~g~l~l~~s~l~D~~~~~l~al~ 256 (527)
=++.++|+.- + .+|++.|..=-|-+. ++.|+==.+++.||=+++.=++.-+.+-++++++
T Consensus 103 PiAllLGlkR-E--aIGat~SI~REp~la-iI~ekYGldSpEgrGVl~~Yi~GTvfGtiffsll 162 (241)
T PF11299_consen 103 PIALLLGLKR-E--AIGATFSIGREPNLA-IISEKYGLDSPEGRGVLGVYIIGTVFGTIFFSLL 162 (241)
T ss_pred HHHHHhcccH-H--hhcceeecccCccee-eeehhcCCCCccccceEEEeeehhhHHHHHHHHH
Confidence 3345555532 1 244444442222222 2233223566666655554444444444444443
No 123
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=47.98 E-value=3.4e+02 Score=28.20 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhCCCCCcCCC-------chHHHHHHHHHHH------HHHHHHHhhcC
Q 036333 98 DLVVVIVFATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVS-------EMVQVETVAQFGV------IFLLFALGLEF 164 (527)
Q Consensus 98 ~l~lil~~a~~~~~l~~rl~lP~iig~IlaGilLGPs~L~~i~-------~~~~~~~l~~lgl------~~llF~~Gle~ 164 (527)
++..+.+...+....-+|--=|.+.-.|-.|+++.+..+.... ....++.+-+.|+ .++.+-+|--+
T Consensus 4 ~~vMi~vg~~liYLai~k~~EPlLLlPigfG~il~N~P~~~~~~~~~~~~~~g~l~~~~~~gi~~~l~P~LIF~GIGAmt 83 (360)
T PF03977_consen 4 NIVMILVGFLLIYLAIKKKYEPLLLLPIGFGMILVNIPLSGLMDQPVGGGEIGGLQPIYYFGISNGLFPPLIFMGIGAMT 83 (360)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHhcCchhhcccccccCCCChHHHHHHHhhhcchhhHHHHHHHhHHH
Confidence 3444444444444445566678888889999999864332111 1112333333332 45777889999
Q ss_pred CchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036333 165 STTKLRVVRAVAVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSM 214 (527)
Q Consensus 165 d~~~lr~~~~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~al~lg~~ls~ 214 (527)
|+.-+-.+.|..+..+..++-+. .....+.++|++..+|..+|.+=..
T Consensus 84 DFgpllanP~~~llGaaAQ~Gif--~t~~~A~~lGf~~~eAAsIgIIGgA 131 (360)
T PF03977_consen 84 DFGPLLANPKTLLLGAAAQFGIF--ATFLGAILLGFTPKEAASIGIIGGA 131 (360)
T ss_pred hhHHHHhCHHHHHHHHHHHHhHH--HHHHHHHHhCCCHHHhhHhhhcccC
Confidence 99999999888777766665432 2333456679999998888876654
No 124
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=47.96 E-value=58 Score=34.05 Aligned_cols=126 Identities=13% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCCChHHHHHHHHHHhhHHHHHHHHH
Q 036333 367 RNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKG-----FGYNNKTSVLVGMSLAQIGEFAFVLL 441 (527)
Q Consensus 367 ~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~~-----~~~~~~~~~~lgl~l~~rG~~~lvl~ 441 (527)
.+++=|+-|.-+|..+|+..+..++ ..+.+-..+=++-+.....+..+ .|++.+|+..+|..=+.-|-.++.+.
T Consensus 133 ~gi~P~LIF~GIGAMtDFgpLlanP-~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvs 211 (433)
T PRK15475 133 SGVAPLVIFMGVGAMTDFGPLLANP-RTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLS 211 (433)
T ss_pred cchHHHHHHHhccHHhcchHHhhCH-HHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhH
Q ss_pred HHHhhCCCCcHHHHHHHHHHHHHhhhhhHHHHhhh--hhhhhhhhhhhhcCCCCC
Q 036333 442 SRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKLI--PGVVHLGVLLRWFSPDSS 494 (527)
Q Consensus 442 ~~a~~~g~i~~~~~~~lv~~~~ls~l~~p~l~~~~--p~~~~~~~~~r~~~~~~~ 494 (527)
+.-.. +++..-.-+.-.-+.++-.+-.|+.+.+. ..|+-..++.|...++++
T Consensus 212 skLAP-~Llg~IaVAAYSYMaLVPiIQPpimklLTTkkER~I~M~~lr~VSk~eK 265 (433)
T PRK15475 212 GKLAP-ELLGAIAVAAYSYMALVPLIQPPIMKALTTETERKIRMVQLRTVSKREK 265 (433)
T ss_pred hhhhh-HhHHHHHHHHHHHHHHHhcccchHHHhccCHHHhCccCCCCCCCCccch
No 125
>COG0679 Predicted permeases [General function prediction only]
Probab=45.86 E-value=3.4e+02 Score=27.62 Aligned_cols=108 Identities=23% Similarity=0.238 Sum_probs=65.5
Q ss_pred cCCchHHHHHHHHHHhCCCCCcCCCc-hHHHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHHHHHHH--HHHHHHHHHH
Q 036333 116 AGQPVITGYLLAGSIIGPGGFNFVSE-MVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLL--QIFLFMFLCG 192 (527)
Q Consensus 116 l~lP~iig~IlaGilLGPs~L~~i~~-~~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~~~~~~--~~~l~~~~~~ 192 (527)
++.|.+++. +.|+++...++...+. ...++.+++....+.++..|+.++....++........+.. -++.|. +..
T Consensus 166 ~~nP~i~a~-i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~~~~~~~~~~~kll~~Pl-~~~ 243 (311)
T COG0679 166 LTNPLIIAL-ILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSKPPIILIALSLKLLLAPL-VAL 243 (311)
T ss_pred HhCcHHHHH-HHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhccccchhHHHHHHHHHHHHHH-HHH
Confidence 567777775 4567776554444332 33578899999999999999999997777766666655555 334443 344
Q ss_pred HHHHHhcCChHHHHHHHHHHhhccHHHHHHHHhh
Q 036333 193 ITALLFGIKLSEGIFVGTFLSMSSTAVVLKFLME 226 (527)
Q Consensus 193 ~~~~~lg~~~~~al~lg~~ls~TS~~vv~~~L~e 226 (527)
.+..++|.+-... -.....+..-+++..-++.+
T Consensus 244 ~~~~~~~l~~~~~-~v~vl~~a~P~A~~~~v~a~ 276 (311)
T COG0679 244 LVAKLLGLSGLAL-QVLVLLSAMPTAVNAYVLAR 276 (311)
T ss_pred HHHHHcCCChHHH-HHHHHHhhCcHHhHHHHHHH
Confidence 4567777754433 22233333333444444443
No 126
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=45.51 E-value=2.8e+02 Score=27.97 Aligned_cols=101 Identities=18% Similarity=0.133 Sum_probs=51.9
Q ss_pred HHHHHHHhccccchhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH---HhhHHHHHHHHHHHH
Q 036333 371 AALFLASIGMLIHVHFLWNHI---DILLASVILVITIKTIIVFTVVKGFGYNNKTSVLVGMS---LAQIGEFAFVLLSRS 444 (527)
Q Consensus 371 ~plFF~~iGl~i~~~~l~~~~---~~~l~l~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~---l~~rG~~~lvl~~~a 444 (527)
+.+-+..+|++++.+.+.+.. ......++.-++.-++.++...+.++.+... ..|+. ..|-|..+.+....+
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~--~~glvL~~~~P~~~~s~v~t~~~ 91 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPEL--AVGVLIVGCCPGGTASNVFTYLL 91 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH--HHHHHheeeCCCchHHHHHHHHh
Confidence 333456778888877775433 2333444445566666677777777665332 23322 245555555444433
Q ss_pred hhCCCCcHHHHHHHHHHHHHhhhhhHHHHhhh
Q 036333 445 SNLHLVEGKLYLLLLGTTALSLVTTPLLFKLI 476 (527)
Q Consensus 445 ~~~g~i~~~~~~~lv~~~~ls~l~~p~l~~~~ 476 (527)
... .+-.-.....+++++.++.|+...++
T Consensus 92 ~gn---~~la~~~~~~stlls~vt~Pl~l~~~ 120 (286)
T TIGR00841 92 KGD---MALSISMTTCSTLLALGMMPLLLYIY 120 (286)
T ss_pred CCC---HhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 211 11222223345566667777666554
No 127
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=45.28 E-value=1.6e+02 Score=31.16 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhccccchhhh
Q 036333 366 IRNMFAALFLASIGMLIHVHFL 387 (527)
Q Consensus 366 ~~~~f~plFF~~iGl~i~~~~l 387 (527)
+.|.++.+||..+|+.+.-+..
T Consensus 60 iNDgLMaiFFf~vGLEiKrE~~ 81 (383)
T PRK14854 60 INDGLMAIYFLYIGLEIKREII 81 (383)
T ss_pred HHhhHHHHHHHHHHHHHHHHHh
Confidence 3579999999999999986554
No 128
>COG3329 Predicted permease [General function prediction only]
Probab=45.08 E-value=3.6e+02 Score=27.67 Aligned_cols=106 Identities=17% Similarity=0.203 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhCCCCCcCCCchHHHHHHHHHHHHHHHHHHh----hcCCchHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 036333 120 VITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALG----LEFSTTKLRVVRAVAVLGGLLQIFLFMFLCGITA 195 (527)
Q Consensus 120 ~iig~IlaGilLGPs~L~~i~~~~~~~~l~~lgl~~llF~~G----le~d~~~lr~~~~~~~~~~~~~~~l~~~~~~~~~ 195 (527)
+.+.+.+.|++..-..-.+.-+ +.+.+.-..++++.+| .|+..+.+...--.......+++++++..-..+.
T Consensus 18 P~llFf~~Gmlia~~ksdl~iP----~~i~~~lslyLL~aIG~kGGveir~snl~a~v~~~~~~~aL~~li~~ia~f~l~ 93 (372)
T COG3329 18 PTLLFFILGMLIAAFKSDLEIP----EAIYQALSLYLLLAIGFKGGVEIRNSNLTAMVLPVALGVALGFLIVFIAYFLLR 93 (372)
T ss_pred chHHHHHHHHHHHHHhccccCc----hHHHHHHHHHHHHHHhcccceeeecCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566676665322222212 3333334445555554 4555555444322222222233333333222223
Q ss_pred HHhcCChHHHHHHHHHHhh---ccHHHHHHHHhhccc
Q 036333 196 LLFGIKLSEGIFVGTFLSM---SSTAVVLKFLMEKNS 229 (527)
Q Consensus 196 ~~lg~~~~~al~lg~~ls~---TS~~vv~~~L~e~~~ 229 (527)
-+.+.+...+...+..-.. +.++.....|.|.+.
T Consensus 94 kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~gi 130 (372)
T COG3329 94 KLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGI 130 (372)
T ss_pred HccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCc
Confidence 3335555556655554433 335556666777654
No 129
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=40.56 E-value=1.2e+02 Score=27.57 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=13.5
Q ss_pred HHHHHHhhhhhHHHHhhhhhhhhh
Q 036333 459 LGTTALSLVTTPLLFKLIPGVVHL 482 (527)
Q Consensus 459 v~~~~ls~l~~p~l~~~~p~~~~~ 482 (527)
++.+++-.++.|+-.....+-.|.
T Consensus 74 lLii~fl~lTaPVaah~iaRAayr 97 (145)
T PRK12586 74 LLSLVFINLTSPVGMHLIARAAYR 97 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777776665433333
No 130
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=40.23 E-value=4.4e+02 Score=27.21 Aligned_cols=92 Identities=16% Similarity=0.082 Sum_probs=48.6
Q ss_pred HhccccchhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHhhc-CCChHHHHHHHHH---HhhHHHHHHHHHHHHhhCCC
Q 036333 377 SIGMLIHVHFLWN---HIDILLASVILVITIKTIIVFTVVKGF-GYNNKTSVLVGMS---LAQIGEFAFVLLSRSSNLHL 449 (527)
Q Consensus 377 ~iGl~i~~~~l~~---~~~~~l~l~~~~~~~K~~~~~l~~~~~-~~~~~~~~~lgl~---l~~rG~~~lvl~~~a~~~g~ 449 (527)
..|++++++++.+ ++.......+.-++..++.++..++.+ +.+.. +.+|+. .+|-|..+.+....+. |-
T Consensus 55 ~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~p~--l~~GliLv~~~Pgg~~S~v~T~lAk--Gn 130 (328)
T TIGR00832 55 PPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFE--YIAGLILLGLARCIAMVFVWNQLAK--GD 130 (328)
T ss_pred HhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHhcchHHHHHHHHHHcC--CC
Confidence 4457777766653 344455555556667777777777653 55532 555543 3566665555555443 21
Q ss_pred CcHHHHHHH--HHHHHHhhhhhHHHHhh
Q 036333 450 VEGKLYLLL--LGTTALSLVTTPLLFKL 475 (527)
Q Consensus 450 i~~~~~~~l--v~~~~ls~l~~p~l~~~ 475 (527)
..+++. ...++++.++.|++..+
T Consensus 131 ---valsv~lt~~stLl~~~~~P~l~~l 155 (328)
T TIGR00832 131 ---PEYTLVLVAVNSLFQVFLYAPLAWL 155 (328)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 22345555666665543
No 131
>PRK11281 hypothetical protein; Provisional
Probab=39.61 E-value=7.9e+02 Score=30.04 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=12.7
Q ss_pred hHHhHHHHHHHHHHHH-hccccc
Q 036333 362 QIEPIRNMFAALFLAS-IGMLIH 383 (527)
Q Consensus 362 ~l~~~~~~f~plFF~~-iGl~i~ 383 (527)
.+..+..++.|+.|+. .+-..+
T Consensus 622 ~~~~~~~~~~pl~~~~~~~~~~~ 644 (1113)
T PRK11281 622 QIVRLSLALLPLLFWSVVAELSP 644 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCc
Confidence 3444456888988863 343333
No 132
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=38.85 E-value=1.9e+02 Score=30.95 Aligned_cols=23 Identities=22% Similarity=0.439 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhccccchhhhh
Q 036333 366 IRNMFAALFLASIGMLIHVHFLW 388 (527)
Q Consensus 366 ~~~~f~plFF~~iGl~i~~~~l~ 388 (527)
+.|-++.+||..+|+.+.-+.+.
T Consensus 67 INDgLMaiFFf~VGLEIKrE~l~ 89 (423)
T PRK14855 67 VNDGLMAVFFLLVGLEIKRELLI 89 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 35799999999999999866553
No 133
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=38.50 E-value=4.5e+02 Score=28.29 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhccccchhhh
Q 036333 366 IRNMFAALFLASIGMLIHVHFL 387 (527)
Q Consensus 366 ~~~~f~plFF~~iGl~i~~~~l 387 (527)
+.|-++.+||..+|+.+.-+.+
T Consensus 66 iNDgLMaiFFf~vGLEiKrE~~ 87 (423)
T PRK14853 66 AADGLLAIFFFVVGLELKREFV 87 (423)
T ss_pred HHHhhHHHHHHHHHHHHhHHHh
Confidence 4579999999999999975544
No 134
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=38.25 E-value=2.7e+02 Score=28.57 Aligned_cols=170 Identities=13% Similarity=0.066 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhcCCcchhhHHHhHHhHHHHHHHHHHHHhccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 036333 337 LSLELGSFAAGVMISTTDLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWNHIDILLASVILVITIKTIIVFTVVKGF 416 (527)
Q Consensus 337 ~s~~lgafvaGl~l~~~~~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~~~~~~l~l~~~~~~~K~~~~~l~~~~~ 416 (527)
.++.+=.++..+.+-+...-+.....-..+++-++|..-...=+|.|.+.+.....-.+.+.++..++-+++..+.....
T Consensus 32 Vpa~v~iy~gamff~t~Glfs~~S~~y~~v~n~llpamI~lmLlqcd~Rki~Klg~rll~ifli~sv~~vlGfIl~yp~~ 111 (384)
T COG5505 32 VPAAVIIYAGAMFFTTVGLFSVESPVYDTVWNYLLPAMIPLMLLQCDVRKIFKLGRRLLFIFLISSVGTVLGFILAYPLL 111 (384)
T ss_pred hhHHHHHHHHHHHHhhcccccccCcHHHHHHHHHHHHHHHHHHHHccHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred CCChHHHHHHHHHHh---hHHHHHHHHHHHHhhCCCCcHHHHHHHHHH-HHHhhhhhHHHHhhhhhhhhhhhhhhhcCCC
Q 036333 417 GYNNKTSVLVGMSLA---QIGEFAFVLLSRSSNLHLVEGKLYLLLLGT-TALSLVTTPLLFKLIPGVVHLGVLLRWFSPD 492 (527)
Q Consensus 417 ~~~~~~~~~lgl~l~---~rG~~~lvl~~~a~~~g~i~~~~~~~lv~~-~~ls~l~~p~l~~~~p~~~~~~~~~r~~~~~ 492 (527)
+--.-|-+-.+-.+. .-|..-++...-+.+ .+.+.|+..+.+ ++.-.+.-|++..+ .+|..+.+||..||
T Consensus 112 ksf~gd~Wka~gmi~gSytGGSaNmAAmqaaLe---VP~~~fsatlaaDtv~ySll~~lli~i---Vpy~~kw~~~tkpd 185 (384)
T COG5505 112 KSFIGDLWKAGGMISGSYTGGSANMAAMQAALE---VPGEYFSATLAADTVMYSLLFFLLISI---VPYKWKWRHYTKPD 185 (384)
T ss_pred hhhcchHHhhhhheeeeeeCCcchHHHHHhhhc---CCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhccCcc
Q ss_pred CCcccCcCCCcccccccccc
Q 036333 493 SSIENGFKGDNLRSESGKQR 512 (527)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~ 512 (527)
+.+-....++....++..+|
T Consensus 186 esKL~A~~~e~a~~e~ywKr 205 (384)
T COG5505 186 ESKLKADGNEGASAESYWKR 205 (384)
T ss_pred HHHHhhhhhhhhhhhhhhhc
No 135
>PF01032 FecCD: FecCD transport family; InterPro: IPR000522 This is a subfamily of bacterial binding-protein-dependent transport systems family, and includes transport system permease proteins involved in the transport across the membrane of several compounds. This entry contains the inner components of this multicomponent transport system.; GO: 0005215 transporter activity, 0016020 membrane; PDB: 4DBL_A 1L7V_B 2QI9_B 2NQ2_A.
Probab=38.09 E-value=1.8e+02 Score=29.74 Aligned_cols=105 Identities=16% Similarity=0.151 Sum_probs=53.7
Q ss_pred HHHHhcCCchHHHHHHHHHHhCCCCC-------cCCCchH--HHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHHHHHH
Q 036333 111 IAFACAGQPVITGYLLAGSIIGPGGF-------NFVSEMV--QVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGL 181 (527)
Q Consensus 111 ~l~~rl~lP~iig~IlaGilLGPs~L-------~~i~~~~--~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~~~~~ 181 (527)
.+...+|+|+++.-+++|..+|-++. |.+-++. -++.-+.+|..+.++.. .... . ......+.
T Consensus 36 ~ii~~~RlPR~l~a~l~G~~La~sG~~lQ~~~rNpLA~P~iLGissgA~lg~~~~~~~~---~~~~-~----~~~~~~a~ 107 (311)
T PF01032_consen 36 FIIWDLRLPRILAAILVGAALALSGALLQTLTRNPLADPSILGISSGASLGAVLAILLF---PSLS-F----YGLPLFAF 107 (311)
T ss_dssp HHHCCTCHHHHHHHHHHHHHHHHHHHHHHHHTT-TT--TTTTTHHHHHHHHHHHHHHCC---TTS--H----HHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCccccccchHhHHHHHHHHHHHHHh---hhhh-h----hhHHHHHH
Confidence 34457899999999999999985542 1222222 25667777777766654 0111 1 11122223
Q ss_pred HHHHHHHHHHHHHH-HHhcCChHHHHHHHHHHhhccHHHHHHH
Q 036333 182 LQIFLFMFLCGITA-LLFGIKLSEGIFVGTFLSMSSTAVVLKF 223 (527)
Q Consensus 182 ~~~~l~~~~~~~~~-~~lg~~~~~al~lg~~ls~TS~~vv~~~ 223 (527)
.+.++...+...++ .-.+.+...-++.|.+++....++..-+
T Consensus 108 iGal~~~~lv~~l~~~~~~~~~~~liL~Gi~i~~~~~al~~~l 150 (311)
T PF01032_consen 108 IGALLALLLVYLLSKRRGGFSPLRLILAGIAISALFSALTSFL 150 (311)
T ss_dssp HHHHHHHHHHHHCHT-TTT--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 33222222222222 1223455667777887776555544443
No 136
>PRK10577 iron-hydroxamate transporter permease subunit; Provisional
Probab=36.83 E-value=7e+02 Score=28.57 Aligned_cols=48 Identities=27% Similarity=0.380 Sum_probs=32.7
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCCC-------cCCCchHH--HHHHHHHHHHHHHHH
Q 036333 112 AFACAGQPVITGYLLAGSIIGPGGF-------NFVSEMVQ--VETVAQFGVIFLLFA 159 (527)
Q Consensus 112 l~~rl~lP~iig~IlaGilLGPs~L-------~~i~~~~~--~~~l~~lgl~~llF~ 159 (527)
+...+|+|+++.-+++|..++-++. |.+-++.. ++.-+.+|..+.++.
T Consensus 392 i~~~~RlPR~l~a~l~G~~La~sG~~lQ~~~rNpLa~P~ilGi~sgA~lg~~~~~~~ 448 (668)
T PRK10577 392 ALLPLRLPRLLAALLAGAMLAVAGTLLQRLTRNPLASPEVLGISSGAGLGVVLALFL 448 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHhhHHHHHHHHHHHHHHH
Confidence 5667899999999999999996653 22223332 455666776665544
No 137
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=36.08 E-value=4.3e+02 Score=25.91 Aligned_cols=104 Identities=13% Similarity=0.121 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHhCCCCCcC---CCchHHHHHHHHHHHHHHHHHHhhcCCchHH
Q 036333 97 SDLVVVIVFATCGGIAFACAG----QPVITGYLLAGSIIGPGGFNF---VSEMVQVETVAQFGVIFLLFALGLEFSTTKL 169 (527)
Q Consensus 97 ~~l~lil~~a~~~~~l~~rl~----lP~iig~IlaGilLGPs~L~~---i~~~~~~~~l~~lgl~~llF~~Gle~d~~~l 169 (527)
+.+.+-++.=.+..++.||.+ .|.+++.++...++-..+... ..+.+.++.+- |=....|..=+=-+++.+
T Consensus 9 f~l~lTl~~y~~a~~l~~r~~~~~l~PlLv~~~~li~~L~~~~i~Y~~Y~~g~~~i~~lL--gPAtVAlAvPLYkq~~~i 86 (230)
T COG1346 9 FGLLLTLLAYFAAKRLYKRTKSPFLNPLLVATVLLIAFLLLFGISYEDYMKGGQWINFLL--GPATVALAVPLYKQRHLI 86 (230)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHcCCCHHHHhcccHHHHHHH--HHHHHHHhhHHHHHHHHH
Confidence 334444444445556777776 355555554444443222111 01222333332 223334444444578899
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 036333 170 RVVRAVAVLGGLLQIFLFMFLCGITALLFGIKL 202 (527)
Q Consensus 170 r~~~~~~~~~~~~~~~l~~~~~~~~~~~lg~~~ 202 (527)
||+|+......+++....+..+..++.++|.+.
T Consensus 87 k~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~ 119 (230)
T COG1346 87 KRHWKPILAGVLVGSVVAIISGVLLAKLFGLSP 119 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 999999988888887777777777788888764
No 138
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=35.66 E-value=5.2e+02 Score=26.78 Aligned_cols=62 Identities=16% Similarity=0.054 Sum_probs=29.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHhhhhhHHHHhhh-hhhhhhhhhh
Q 036333 424 VLVGMSLAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKLI-PGVVHLGVLL 486 (527)
Q Consensus 424 ~~lgl~l~~rG~~~lvl~~~a~~~g~i~~~~~~~lv~~~~ls~l~~p~l~~~~-p~~~~~~~~~ 486 (527)
+...+...|....-+++..+-+....+.......+. ..+...++--++.|+. -.+|++.|.+
T Consensus 200 ~~~~li~~Pl~li~la~~GY~yTA~~L~~~l~~sl~-l~~~~~l~~~l~~Rwl~v~~RRLA~~R 262 (340)
T PF12794_consen 200 WWPLLILAPLALIVLALLGYYYTALQLLERLILSLY-LLLGWLLVYQLILRWLLVARRRLAYER 262 (340)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666665555554433333322221 1222344556666666 4444454444
No 139
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=34.59 E-value=1.7e+02 Score=27.20 Aligned_cols=88 Identities=18% Similarity=0.207 Sum_probs=51.1
Q ss_pred hChhHHHHHHHHHHHhcCCcch--hhHHHhH-HhHHHHHHHHHHHHhccccchhhhh---HHHHHHHHHHHHHHHHHHHH
Q 036333 335 LGLSLELGSFAAGVMISTTDLA--QHTLEQI-EPIRNMFAALFLASIGMLIHVHFLW---NHIDILLASVILVITIKTII 408 (527)
Q Consensus 335 lg~s~~lgafvaGl~l~~~~~~--~~l~~~l-~~~~~~f~plFF~~iGl~i~~~~l~---~~~~~~l~l~~~~~~~K~~~ 408 (527)
+.+...-|+.+.|+++++-... ....... +.++++.+.+|...+|++.-+.++. +.......+.+++.+.-.+.
T Consensus 21 ~~LG~a~G~L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~ 100 (169)
T PF06826_consen 21 FSLGAAGGVLFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLI 100 (169)
T ss_pred eeccccHHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444555777788877753110 0122333 3457899999999999998876653 23222333333333444555
Q ss_pred HHHHHh-hcCCChHH
Q 036333 409 VFTVVK-GFGYNNKT 422 (527)
Q Consensus 409 ~~l~~~-~~~~~~~~ 422 (527)
++...+ +++++.-.
T Consensus 101 ~~~~~~~~~~l~~~~ 115 (169)
T PF06826_consen 101 ALVIGRYLFKLNPGI 115 (169)
T ss_pred HHHHHHHHcCCCHHH
Confidence 555555 88888554
No 140
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=33.46 E-value=3.3e+02 Score=27.95 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=47.3
Q ss_pred HHHHHHHHHhCCCCCcCCCch--HHHHHHHHHHHHHHHHHHhhcCCchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036333 122 TGYLLAGSIIGPGGFNFVSEM--VQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMFLCGITALL 197 (527)
Q Consensus 122 ig~IlaGilLGPs~L~~i~~~--~~~~~l~~lgl~~llF~~Gle~d~~~lr~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (527)
+-.++.|+++|+. +++ +.+..-..+-..|+-|..|-.+|++.+.+.+-.-+.+++..++++.....+...+
T Consensus 175 llP~iiG~iLGNL-----D~~~r~fl~~~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~~~~dr~ 247 (314)
T PF03812_consen 175 LLPIIIGMILGNL-----DPDFRKFLAPGVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPLYLADRL 247 (314)
T ss_pred HHHHHHHHHHhcC-----CHHHHHHHhcCCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHH
Confidence 4468899999952 221 2233334456678999999999999999888777777776555554444444433
No 141
>PRK10263 DNA translocase FtsK; Provisional
Probab=33.08 E-value=3.9e+02 Score=32.98 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=7.8
Q ss_pred ChhHHHHHHHHHHHh
Q 036333 336 GLSLELGSFAAGVMI 350 (527)
Q Consensus 336 g~s~~lgafvaGl~l 350 (527)
+.-+.+|++++.+++
T Consensus 62 Nl~GiVGA~LAD~L~ 76 (1355)
T PRK10263 62 NLGGMPGAWLADTLF 76 (1355)
T ss_pred cccchHHHHHHHHHH
Confidence 344556666555444
No 142
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=31.07 E-value=6.7e+02 Score=26.64 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=60.9
Q ss_pred HHHHHhcCCchHHHH-HHHHHHhCCCCCcCCCch-----H-HHHHHHHHHHHHHHHHHhhc-CCchHHHHhhhHHHHHHH
Q 036333 110 GIAFACAGQPVITGY-LLAGSIIGPGGFNFVSEM-----V-QVETVAQFGVIFLLFALGLE-FSTTKLRVVRAVAVLGGL 181 (527)
Q Consensus 110 ~~l~~rl~lP~iig~-IlaGilLGPs~L~~i~~~-----~-~~~~l~~lgl~~llF~~Gle-~d~~~lr~~~~~~~~~~~ 181 (527)
+.+-+.+++|..+.+ ++.=.++-- .|.+++. . .-+.++.=-.-.+|+.+|+- +|++++-+...-.-.+-.
T Consensus 281 ~il~kf~~~P~~va~MIil~a~lk~--~nlvp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~vii~ 358 (438)
T COG3493 281 GILGKFIGLPGPVAFMIILVAILKA--ANLVPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQNVIIA 358 (438)
T ss_pred HHHHHhhcCCchHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccHHHHHHHhchhHHHHH
Confidence 344455779977733 344344432 2344421 1 23445555555689999997 899998876655444445
Q ss_pred HHHHHHHHHHH-HHHHHhcCChHHHHHH-HHHHhh
Q 036333 182 LQIFLFMFLCG-ITALLFGIKLSEGIFV-GTFLSM 214 (527)
Q Consensus 182 ~~~~l~~~~~~-~~~~~lg~~~~~al~l-g~~ls~ 214 (527)
.++++.+..++ +++.++|+.+.++... |.|.+.
T Consensus 359 ~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~ 393 (438)
T COG3493 359 LSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMAN 393 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcC
Confidence 55555555554 4568888766555444 477664
No 143
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=30.97 E-value=6.2e+02 Score=26.26 Aligned_cols=105 Identities=15% Similarity=0.108 Sum_probs=59.7
Q ss_pred HHHHHHHH-HhcCCchHHHHHHHHHHhCCCC---CcCCCchHHHHHHHHHH------HHHHHHHHhhcCCchHHHHhhhH
Q 036333 106 ATCGGIAF-ACAGQPVITGYLLAGSIIGPGG---FNFVSEMVQVETVAQFG------VIFLLFALGLEFSTTKLRVVRAV 175 (527)
Q Consensus 106 a~~~~~l~-~rl~lP~iig~IlaGilLGPs~---L~~i~~~~~~~~l~~lg------l~~llF~~Gle~d~~~lr~~~~~ 175 (527)
+.++-++. +|--=|.+.-.|-.|+++.+.- ++.+.+...++.+-+.| =.++.+-+|--+|+.-+-.+.|.
T Consensus 9 g~~LiYLai~k~~EPlLLiPigfG~il~NiP~~~~g~~~~gg~l~~~~~~gi~~~l~P~LIFlGIGAmtDFgpllanP~~ 88 (354)
T TIGR01109 9 SLLLLYLAIAKKFEPLLLIPIGFGGILSNIPEAGLGLTAEGGILALFYKVGIGSGIAPLLIFMGIGALTDFGPLLANPRT 88 (354)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHhcCCccccccccCCchHHHHHHHHHhcchHHHHHHHhccHHhhhHHHHhChHH
Confidence 33333444 4555677888888898888532 22222212233232333 24567778889999999888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC------ChHHHHHHHHHH
Q 036333 176 AVLGGLLQIFLFMFLCGITALLFGI------KLSEGIFVGTFL 212 (527)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~lg~------~~~~al~lg~~l 212 (527)
.+..+..++-+.. ....+.++|+ +..+|..+|.+=
T Consensus 89 ~llGaaAQ~GiF~--t~~~A~~lGf~~~~~~~~~eAAsIgIIG 129 (354)
T TIGR01109 89 LLLGAAAQFGIFA--TVFGALTLNFFGIISFSLPQAAAIGIIG 129 (354)
T ss_pred HHHHHHHHhhHHH--HHHHHHHhCCCcccccChhhceeeeeec
Confidence 7776666654322 2223344565 445655555443
No 144
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=29.98 E-value=3.1e+02 Score=29.60 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhccccchhhhh
Q 036333 366 IRNMFAALFLASIGMLIHVHFLW 388 (527)
Q Consensus 366 ~~~~f~plFF~~iGl~i~~~~l~ 388 (527)
+.|.++.+||..+|+.+.-+.+.
T Consensus 72 INDgLMaiFFf~VGLEIKrE~~~ 94 (438)
T PRK14856 72 IDDVLMALFFLMIGLEIKRELLF 94 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35799999999999999865553
No 145
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=28.31 E-value=4.5e+02 Score=23.74 Aligned_cols=26 Identities=4% Similarity=0.120 Sum_probs=14.3
Q ss_pred HHHHHH--HhccccchhhhhHHHHHHHH
Q 036333 371 AALFLA--SIGMLIHVHFLWNHIDILLA 396 (527)
Q Consensus 371 ~plFF~--~iGl~i~~~~l~~~~~~~l~ 396 (527)
+++||+ .+|.--..+.+..+++.+++
T Consensus 69 m~LfFVPagVGim~~~~ll~~~~~~Il~ 96 (141)
T PRK04125 69 IGFLFVPSGISVINSLGVMSQYPVQIIG 96 (141)
T ss_pred HHHHHhhhHhHHHHhHHHHHHHHHHHHH
Confidence 566664 55555456666666554433
No 146
>PRK10440 iron-enterobactin transporter permease; Provisional
Probab=27.43 E-value=7.1e+02 Score=25.79 Aligned_cols=50 Identities=24% Similarity=0.231 Sum_probs=32.1
Q ss_pred HHHhcCCchHHHHHHHHHHhCCCCC-------cCCCchHH--HHHHHHHHHHHHHHHHh
Q 036333 112 AFACAGQPVITGYLLAGSIIGPGGF-------NFVSEMVQ--VETVAQFGVIFLLFALG 161 (527)
Q Consensus 112 l~~rl~lP~iig~IlaGilLGPs~L-------~~i~~~~~--~~~l~~lgl~~llF~~G 161 (527)
+...+|+|+++..+++|..++-+|. |.+-++.. ++.-+.+|..+.++..|
T Consensus 54 ii~~~RlPRil~a~l~G~~LalsG~llQ~l~rNpLa~P~iLGissGA~lg~~~~~~~~~ 112 (330)
T PRK10440 54 VVTEWRLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWSGVLVAMVLFG 112 (330)
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcHhhHHHHHHHHHHHHHHHHh
Confidence 3446799999999999999996543 22222222 55566677666554333
No 147
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=27.23 E-value=7.1e+02 Score=30.15 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=23.9
Q ss_pred HHHHHhhhhhHHHHhhhhhhhhhhhhhhhcCCCCCc
Q 036333 460 GTTALSLVTTPLLFKLIPGVVHLGVLLRWFSPDSSI 495 (527)
Q Consensus 460 ~~~~ls~l~~p~l~~~~p~~~~~~~~~r~~~~~~~~ 495 (527)
.++++|.++.|.+..+.-+ ...+.+||.+|++++
T Consensus 1006 ~St~ltL~vvP~ly~~~~~--~~~~~~~~~~~~~~~ 1039 (1040)
T PRK10503 1006 VSQVLTLFTTPVIYLLFDR--LALYTKSRFPRHEEE 1039 (1040)
T ss_pred HHHHHHHHHHHHHHHHHHH--hhhhhhhcCcccccc
Confidence 3456788888998887622 235678899888764
No 148
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=26.01 E-value=3.4e+02 Score=28.76 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhccccchhhhh
Q 036333 366 IRNMFAALFLASIGMLIHVHFLW 388 (527)
Q Consensus 366 ~~~~f~plFF~~iGl~i~~~~l~ 388 (527)
+.|.++.+||..+|+.+.-+.+.
T Consensus 63 iNDgLMaiFFf~vGLEiKrE~~~ 85 (388)
T PRK09561 63 INDGLMAVFFLLIGLEVKRELLE 85 (388)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHc
Confidence 35799999999999999866553
No 149
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=24.22 E-value=6.6e+02 Score=24.33 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=43.8
Q ss_pred HHHHhhcCCchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhccHHHHHHHHhhcc
Q 036333 157 LFALGLEFSTTKLRVVRAVAVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSSTAVVLKFLMEKN 228 (527)
Q Consensus 157 lF~~Gle~d~~~lr~~~~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~al~lg~~ls~TS~~vv~~~L~e~~ 228 (527)
.+..-+--+.+.+||+++..+..-..+.++.++....+++++|.+. .+..+.+-=...+|+...+-++.+
T Consensus 61 ALAvPLY~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~--~~~~Sl~pkSVTtpiAi~is~~iG 130 (215)
T PF04172_consen 61 ALAVPLYRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSP--EIILSLAPKSVTTPIAIEISEQIG 130 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH--HHHHHHHHHHhhHHHHHHHHHHhC
Confidence 3333343467789999988887777777777766667778888764 233333332234567766655543
No 150
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=23.92 E-value=3.9e+02 Score=28.36 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhccccchhhhh
Q 036333 366 IRNMFAALFLASIGMLIHVHFLW 388 (527)
Q Consensus 366 ~~~~f~plFF~~iGl~i~~~~l~ 388 (527)
+.|.++.+||..+|+.+.-+.+.
T Consensus 63 iNDgLMaiFFf~vGLEiKrE~~~ 85 (389)
T PRK09560 63 INDGLMAVFFLLVGLEIKRELLE 85 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35799999999999999865553
No 151
>COG2431 Predicted membrane protein [Function unknown]
Probab=23.51 E-value=7.8e+02 Score=24.93 Aligned_cols=80 Identities=15% Similarity=0.072 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHhhHHHHHHHHHH-HHhhCCCCcHHHHHHHHHHHHHhhhhhHHH
Q 036333 394 LLASVILVITIKTIIVFTVVKGFGYNNKTSVLVGMSLAQIGEFAFVLLS-RSSNLHLVEGKLYLLLLGTTALSLVTTPLL 472 (527)
Q Consensus 394 ~l~l~~~~~~~K~~~~~l~~~~~~~~~~~~~~lgl~l~~rG~~~lvl~~-~a~~~g~i~~~~~~~lv~~~~ls~l~~p~l 472 (527)
.+...+..+++-.++..+.+...++|.++++.++.+++.-...+.++.. ...-.|.+ .|..=..==+++.+..|.+
T Consensus 165 gl~l~~i~ilssliGG~iaa~~l~lpl~~~lAmasG~GWYSlsG~ll~~a~~pv~Gsi---afl~nl~RE~lai~liP~L 241 (297)
T COG2431 165 GLILAFITLLSSLIGGLIAAFLLDLPLTTGLAMASGFGWYSLSGILLTEAYGPVLGSI---AFLNNLLRELLAIVLIPLL 241 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccchhhhhhHHHhcccCcchhhH---HHHHHHHHHHHHHHHHHHH
Confidence 3444555667788888889999999999999999988888876666654 22222221 1111111124455667887
Q ss_pred Hhhh
Q 036333 473 FKLI 476 (527)
Q Consensus 473 ~~~~ 476 (527)
.|..
T Consensus 242 ~r~~ 245 (297)
T COG2431 242 ARRF 245 (297)
T ss_pred HHhC
Confidence 7754
No 152
>PRK12430 putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
Probab=23.21 E-value=1.1e+02 Score=32.14 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=39.4
Q ss_pred CCCeEEecCCCCCCcchhhh--HHHHHHHHHHHHHHHHHHHHHHhcCCchHHH-----HHHHHHHhCC
Q 036333 73 KDNVFIISNFKSKYPVLQLD--LRLISDLVVVIVFATCGGIAFACAGQPVITG-----YLLAGSIIGP 133 (527)
Q Consensus 73 ~~~~~~~~~p~~~~p~l~~d--~~li~~l~lil~~a~~~~~l~~rl~lP~iig-----~IlaGilLGP 133 (527)
++|.|...-|....|.+..+ .+....+..++.+-..++|++||++.+..-+ .++++.-+||
T Consensus 2 ~~~~~~~~~~~~~~p~~~~~~L~Qv~~aL~~VlalI~~~aWLlRR~~~~~~~~~~~~lkVv~s~sLG~ 69 (379)
T PRK12430 2 KNNLFFQSISNSLHPIFNDEKFLQIMSSLFEIILLILILSWILKKISLFKINKIISRMKIIERLSLGS 69 (379)
T ss_pred CCchhhhcCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCCCCceEEEEecccCC
Confidence 35666655555444554421 2566667777777778889999998877632 4566666675
No 153
>COG3748 Predicted membrane protein [Function unknown]
Probab=21.02 E-value=8.6e+02 Score=25.21 Aligned_cols=92 Identities=12% Similarity=0.068 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhChhH---HHHHHHHHHHhcCC-----cchhh----------------HHHhHHhHHH-
Q 036333 314 NELYQLASVAFCLLVAWCSDKLGLSL---ELGSFAAGVMISTT-----DLAQH----------------TLEQIEPIRN- 368 (527)
Q Consensus 314 ~e~~~~~~l~~~l~~~~~ae~lg~s~---~lgafvaGl~l~~~-----~~~~~----------------l~~~l~~~~~- 368 (527)
.-+..++.+.++...+..++.+-.-+ -+|||.+-+|..|. |..+. -..|.++..+
T Consensus 147 ~~l~~vl~~~lv~~Awg~TqlFtgRaAflhlGA~~aTiMsaNVF~vIiPnQk~vVa~l~Agr~pDP~~gk~akqRS~HNn 226 (407)
T COG3748 147 ALLMVVLYVALVAAAWGYTQLFTGRAAFLHLGAITATIMSANVFFVIIPNQKIVVADLEAGRDPDPKLGKTAKQRSRHNN 226 (407)
T ss_pred hhHHHHHHHHHHHHHhcccceecCchHhhhhhHHHHhhheeeEEEEEecChHHHHHHHHcCCCCCcchhhhhhhhhhhcc
Confidence 33344444555556666666653332 27888888887762 21111 1224444543
Q ss_pred -HHHHHHHHHhccccchhhhhH-HHHHHHHHHHHHHHHH
Q 036333 369 -MFAALFLASIGMLIHVHFLWN-HIDILLASVILVITIK 405 (527)
Q Consensus 369 -~f~plFF~~iGl~i~~~~l~~-~~~~~l~l~~~~~~~K 405 (527)
+-+|..|+++.=+....+=.+ +|.++.++.+..+..|
T Consensus 227 ylTLPVlF~MlSNHyp~~~gt~fnWii~alv~l~gV~IR 265 (407)
T COG3748 227 YLTLPVLFTMLSNHYPLAFGTQFNWIIAALVFLMGVLIR 265 (407)
T ss_pred eehHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHH
Confidence 779999999887776544332 3433334444444444
No 154
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=20.63 E-value=1.5e+03 Score=27.18 Aligned_cols=43 Identities=26% Similarity=0.244 Sum_probs=24.9
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036333 171 VVRAVAVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSM 214 (527)
Q Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~al~lg~~ls~ 214 (527)
+++|.++..++ ++.++++.+.++.+++|.++..--+.|.+++.
T Consensus 353 ~~~r~~liv~~-~IPisi~~t~~~m~~~g~slN~~SL~gl~lai 395 (1021)
T PF00873_consen 353 RNWRSALIVAL-SIPISILGTFIFMYLFGISLNIMSLAGLILAI 395 (1021)
T ss_dssp TSHHHHHHHHH-HHHHHHHHHHHHHHHTTTTBEHHHHHHHHHHH
T ss_pred cchHHHHHHHH-HHHHHHHHHHHHHHHcCCCchHHHHHhHHHhc
Confidence 44566555443 45555555555668889887555555555443
Done!