Query 036333
Match_columns 527
No_of_seqs 255 out of 1662
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 20:01:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036333.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036333hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.9 1.4E-23 4.7E-28 216.5 13.0 298 144-476 59-383 (388)
2 3zux_A Transporter, ASBTNM; tr 98.2 0.0014 4.7E-08 66.5 29.6 106 147-257 43-152 (332)
3 3zux_A Transporter, ASBTNM; tr 83.3 12 0.0004 37.3 12.7 122 344-476 28-155 (332)
4 2l0e_A Sodium/hydrogen exchang 74.0 0.58 2E-05 30.2 -0.3 29 201-229 2-30 (33)
5 2k3c_A TMIX peptide; membrane 44.5 0.22 7.4E-06 32.3 -6.4 27 326-352 4-30 (33)
6 2htg_A NHE-1, NHE1 isoform of 22.9 4.2 0.00014 25.1 -2.8 22 232-253 4-25 (28)
7 4g1u_A Hemin transport system 17.6 7.3E+02 0.025 24.5 13.7 43 115-157 76-127 (357)
8 3ro5_A Nucleocapsid protein; i 10.5 1E+02 0.0035 30.8 1.8 42 45-86 447-490 (499)
9 2kog_A Vesicle-associated memb 9.1 91 0.0031 26.0 0.7 21 19-39 31-51 (119)
10 2zy9_A Mg2+ transporter MGTE; 9.0 1.4E+03 0.048 23.1 10.2 19 163-181 369-387 (473)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.90 E-value=1.4e-23 Score=216.55 Aligned_cols=298 Identities=15% Similarity=0.071 Sum_probs=217.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCchHH----HHhhh--HHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhccH
Q 036333 144 QVETVAQFGVIFLLFALGLEFSTTKL----RVVRA--VAVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSST 217 (527)
Q Consensus 144 ~~~~l~~lgl~~llF~~Gle~d~~~l----r~~~~--~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~al~lg~~ls~TS~ 217 (527)
..+-+.+-.+.+++|.+|+|+|.+.+ ++.+| .....++.++++|+++. ..++....++..-..+...|+.
T Consensus 59 l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy----~~~~~~~~~~~~gw~ip~ATdI 134 (388)
T 1zcd_A 59 MLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLY----LAFNYADPITREGWAIPAATDI 134 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHH----GGGCCSSTTHHHHTSSSSCCCH
T ss_pred HHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHH----HHHhcCChhhhhhhHHHHHHHH
Confidence 45667888999999999999999877 55555 46778889999998762 3455555667777777888999
Q ss_pred HHHHHHHhhccccC-CchhHHHHHHHHHhhHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 036333 218 AVVLKFLMEKNSTN-ALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVLQGMISITKLLVVLIAFLGILSILSRTCVPW 296 (527)
Q Consensus 218 ~vv~~~L~e~~~~~-s~~g~l~l~~s~l~D~~~~~l~al~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~r~~~~~ 296 (527)
+....++...+... +..++.+++.+++||+.+|++++++.. .+. +...+ .. .++++++...+
T Consensus 135 Afal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt---~~~---~~~~l---~~-~~~~~~~~~~l------- 197 (388)
T 1zcd_A 135 AFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT---NDL---SMASL---GV-AAVAIAVLAVL------- 197 (388)
T ss_dssp HHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC---CCC---CHHHH---HH-HHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc---CCc---cHHHH---HH-HHHHHHHHHHH-------
Confidence 99999999977554 455699999999999999999887632 111 11111 11 11111111111
Q ss_pred HHHHHHhhhhccccccchhHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHhcCC-----cchhhHHHhHHhHH-HHH
Q 036333 297 LLKLMTSLSSQFCLVQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTT-----DLAQHTLEQIEPIR-NMF 370 (527)
Q Consensus 297 l~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~ae~lg~s~~lgafvaGl~l~~~-----~~~~~l~~~l~~~~-~~f 370 (527)
.|. ..++...+..+ .+..++.++..|+|+.+|+|++|+++|+. +..++++++++++. .++
T Consensus 198 -----~r~-------~v~~~~~y~~l--gl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~i 263 (388)
T 1zcd_A 198 -----NLC-------GARRTGVYILV--GVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLI 263 (388)
T ss_dssp -----HHT-------TCCCTHHHHHH--HHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTH
T ss_pred -----HHh-------cchhHHHHHHH--HHHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHH
Confidence 111 11222222222 33557788999999999999999999974 34688999999997 588
Q ss_pred HHHH-HHHhccccchhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChHHHHHHHHHHhhHHHHHH
Q 036333 371 AALF-LASIGMLIHVHFLWNH-IDILLASVILVITIKTIIVFTVVKGF----------GYNNKTSVLVGMSLAQIGEFAF 438 (527)
Q Consensus 371 ~plF-F~~iGl~i~~~~l~~~-~~~~l~l~~~~~~~K~~~~~l~~~~~----------~~~~~~~~~lgl~l~~rG~~~l 438 (527)
+|+| |+..|.++|....... ....+.+.+..+++|+++++..++.. |++++|...+|+.++.++++++
T Consensus 264 lPlFaFanaGv~l~~~~~~~l~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL 343 (388)
T 1zcd_A 264 LPLFAFANAGVSLQGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSI 343 (388)
T ss_dssp HHHHHHHHCCCCCSSSCCCTHHHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHH
T ss_pred HHHHHHHhcCeeecccchhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHH
Confidence 9999 9999999997422111 11223444556889999955555554 8999999999999999999999
Q ss_pred HHHHHHhhCCC--CcHHHHHHHHHHHHHhhhhhHHHHhhh
Q 036333 439 VLLSRSSNLHL--VEGKLYLLLLGTTALSLVTTPLLFKLI 476 (527)
Q Consensus 439 vl~~~a~~~g~--i~~~~~~~lv~~~~ls~l~~p~l~~~~ 476 (527)
++++.+.+.+. ..++.+..++..+++|++++|++.|+.
T Consensus 344 ~Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~ 383 (388)
T 1zcd_A 344 FIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVR 383 (388)
T ss_dssp HHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTT
T ss_pred HHHHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998876 367779999999999999999887754
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=98.23 E-value=0.0014 Score=66.52 Aligned_cols=106 Identities=12% Similarity=0.174 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHhhcCCchHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhccH-HHHHH
Q 036333 147 TVAQFGVIFLLFALGLEFSTTKLRVVR---AVAVLGGLLQIFLFMFLCGITALLFGIKLSEGIFVGTFLSMSST-AVVLK 222 (527)
Q Consensus 147 ~l~~lgl~~llF~~Gle~d~~~lr~~~---~~~~~~~~~~~~l~~~~~~~~~~~lg~~~~~al~lg~~ls~TS~-~vv~~ 222 (527)
.....++.+++|..|++++.+++++.. |......+...++.=+++..+..+++.+. ....|.++....| ++.+.
T Consensus 43 ~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~--~~~~Glil~~~~P~~~~s~ 120 (332)
T 3zux_A 43 PYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPA--EIAVGVILVGCCPGGTASN 120 (332)
T ss_dssp GGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCH--HHHHHHHHHHHSCCCTHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--HHHHHHHHHhcCCchhHHH
Confidence 344567889999999999999998543 33333333344332234444455556553 2233333221111 11112
Q ss_pred HHhhccccCCchhHHHHHHHHHhhHHHHHHHHHHH
Q 036333 223 FLMEKNSTNALHGQVTIGTLILQDCAVGLLFALLP 257 (527)
Q Consensus 223 ~L~e~~~~~s~~g~l~l~~s~l~D~~~~~l~al~~ 257 (527)
++... .+.+. .+..+...++.+.+.+...+..
T Consensus 121 v~t~~--a~Gd~-~la~~~~~~stll~~~~~Pl~~ 152 (332)
T 3zux_A 121 VMTYL--ARGNV-ALSVAVTSVSTLTSPLLTPAIF 152 (332)
T ss_dssp HHHHH--TTCCH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--hCCCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 23332 23333 4677777788887776665443
No 3
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=83.26 E-value=12 Score=37.32 Aligned_cols=122 Identities=16% Similarity=0.128 Sum_probs=63.7
Q ss_pred HHHHHHhcCCcchhhHHHhHHhHHHHHHHHHHHHhccccchhhhhH---HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 036333 344 FAAGVMISTTDLAQHTLEQIEPIRNMFAALFLASIGMLIHVHFLWN---HIDILLASVILVITIKTIIVFTVVKGFGYNN 420 (527)
Q Consensus 344 fvaGl~l~~~~~~~~l~~~l~~~~~~f~plFF~~iGl~i~~~~l~~---~~~~~l~l~~~~~~~K~~~~~l~~~~~~~~~ 420 (527)
.+.|...|+... .+++.....+.+-+...|++++.+.+.. ++.......+.-++..++.++..++.++.+.
T Consensus 28 ~~lg~~~P~~~~------~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l~~ 101 (332)
T 3zux_A 28 AAAAFFAPDTFK------WAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLPA 101 (332)
T ss_dssp HHHHHHCGGGTG------GGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHcchhhh------hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCh
Confidence 356666665311 1234444566666778888888877763 3333444455556677777777777777664
Q ss_pred HHHHHHHHH---HhhHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHhhhhhHHHHhhh
Q 036333 421 KTSVLVGMS---LAQIGEFAFVLLSRSSNLHLVEGKLYLLLLGTTALSLVTTPLLFKLI 476 (527)
Q Consensus 421 ~~~~~lgl~---l~~rG~~~lvl~~~a~~~g~i~~~~~~~lv~~~~ls~l~~p~l~~~~ 476 (527)
... .|+. .+|-|..+.+....+. | =.+-.......+++++.++.|++..++
T Consensus 102 ~~~--~Glil~~~~P~~~~s~v~t~~a~--G-d~~la~~~~~~stll~~~~~Pl~~~l~ 155 (332)
T 3zux_A 102 EIA--VGVILVGCCPGGTASNVMTYLAR--G-NVALSVAVTSVSTLTSPLLTPAIFLML 155 (332)
T ss_dssp HHH--HHHHHHHHSCCCTHHHHHHHHTT--C-CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHhcCCchhHHHHHHHHhC--C-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2222 2344444444333222 1 111122222234555666667665554
No 4
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=74.02 E-value=0.58 Score=30.24 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=24.9
Q ss_pred ChHHHHHHHHHHhhccHHHHHHHHhhccc
Q 036333 201 KLSEGIFVGTFLSMSSTAVVLKFLMEKNS 229 (527)
Q Consensus 201 ~~~~al~lg~~ls~TS~~vv~~~L~e~~~ 229 (527)
++..++++|+++|+|++..+..++++.+.
T Consensus 2 ~~~~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 2 KKKDNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCCCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHccCCChHHHHHHHHHcCC
Confidence 45667899999999999999999998764
No 5
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=44.49 E-value=0.22 Score=32.27 Aligned_cols=27 Identities=19% Similarity=0.263 Sum_probs=23.4
Q ss_pred HHHHHHHHHhChhHHHHHHHHHHHhcC
Q 036333 326 LLVAWCSDKLGLSLELGSFAAGVMIST 352 (527)
Q Consensus 326 l~~~~~ae~lg~s~~lgafvaGl~l~~ 352 (527)
+.+++++|.+|+|++++.+.+|+.+++
T Consensus 4 y~~Yl~AE~~~lSGIlavv~~Gi~~~~ 30 (33)
T 2k3c_A 4 YMAYLSAELFHLSGIMALIASGVVMRP 30 (33)
T ss_dssp STTTGGGSSSTTTTTTTTTTTTSCCCC
T ss_pred HHHHHHHHHhCcChHHHHHHHHHHHhh
Confidence 346788999999999999999998875
No 6
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}
Probab=22.89 E-value=4.2 Score=25.12 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=16.6
Q ss_pred CchhHHHHHHHHHhhHHHHHHH
Q 036333 232 ALHGQVTIGTLILQDCAVGLLF 253 (527)
Q Consensus 232 s~~g~l~l~~s~l~D~~~~~l~ 253 (527)
.+.-.++.|+|++||..+++++
T Consensus 4 ~~L~~lvfGESllNDavaiVlf 25 (28)
T 2htg_A 4 ELLHILVFGESLLNDAVTVVLY 25 (28)
T ss_dssp STTHHHHTTTTTTTTTTTTTTT
T ss_pred ceEEEEEEeeeeecccEEEEEE
Confidence 4455688899999998876654
No 7
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=17.57 E-value=7.3e+02 Score=24.52 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=27.7
Q ss_pred hcCCchHHHHHHHHHHhCCCCC-------cCCCchH--HHHHHHHHHHHHHH
Q 036333 115 CAGQPVITGYLLAGSIIGPGGF-------NFVSEMV--QVETVAQFGVIFLL 157 (527)
Q Consensus 115 rl~lP~iig~IlaGilLGPs~L-------~~i~~~~--~~~~l~~lgl~~ll 157 (527)
.+|+|+++.-+++|..+|-+|. |.+-++. -++.-+.+|..+.+
T Consensus 76 ~~RlPR~l~a~lvGaaLavsG~~~Q~~~rNPLA~P~iLGissGA~lg~~l~i 127 (357)
T 4g1u_A 76 NIRLPRVLLAVVVGCALAVSGTIMQGLFRNPLADPGLLGISSGAALCVGLII 127 (357)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCTTTTTHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHH
Confidence 4799999999999999995542 2222222 24556666665543
No 8
>3ro5_A Nucleocapsid protein; influenza nucleoprotein, viral protein; HET: LGH; 2.66A {Influenza a virus} SCOP: e.75.1.1 PDB: 2wfs_A 2iqh_A* 3tg6_A* 4bbl_A 2ymn_A 2q06_A
Probab=10.55 E-value=1e+02 Score=30.83 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=28.6
Q ss_pred cccccccccccccCCCCCCCCCCceec--CCCCeEEecCCCCCC
Q 036333 45 EEKSFKLNDVFNLDNDNGAEETPTLID--RKDNVFIISNFKSKY 86 (527)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~p~~~~ 86 (527)
|.++||=..||.|+|+|..+-...-+| +....|.+||..+|.
T Consensus 447 e~~sF~G~~mfelsDe~~tnpI~~~~~~~~~~s~ffgd~ae~y~ 490 (499)
T 3ro5_A 447 EDVSFQGRGVFELSDEKATSPIVPSFDMSNEGSYFFGDNAEEYD 490 (499)
T ss_dssp TCCCSTTCCBBCTTCTTCCSCBCCCC-----CCCTTCBSSSCBC
T ss_pred ccceeccccceecccccccCCCCCCccccCCcceeccCChhhcc
Confidence 567899999999999987555444444 334556688888773
No 9
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=9.07 E-value=91 Score=26.00 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=14.4
Q ss_pred ccchHhHHHHHHHHHhhhCCC
Q 036333 19 FNNSVAEKQAVLETVARVKPK 39 (527)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~ 39 (527)
-|+.++..|+.++.|..+-.+
T Consensus 31 ~~d~l~~vq~evdeVk~IM~~ 51 (119)
T 2kog_A 31 SNRRLQQTQAQVDEVVDIMRV 51 (119)
T ss_dssp SCSHHHHSSHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHH
Confidence 356777777777777776643
No 10
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=9.00 E-value=1.4e+03 Score=23.07 Aligned_cols=19 Identities=21% Similarity=0.142 Sum_probs=9.5
Q ss_pred cCCchHHHHhhhHHHHHHH
Q 036333 163 EFSTTKLRVVRAVAVLGGL 181 (527)
Q Consensus 163 e~d~~~lr~~~~~~~~~~~ 181 (527)
+++.+..++..++-+..|+
T Consensus 369 ~~~~~~~~~~~~ke~~~~~ 387 (473)
T 2zy9_A 369 DLDLRDWRRVFLKEMGVGL 387 (473)
T ss_dssp SSCGGGHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 4666665554444444433
Done!