Query 036333
Match_columns 527
No_of_seqs 255 out of 1662
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 20:01:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036333.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036333hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vv5a3 f.34.1.1 (A:27-112) Me 20.9 1.3E+02 0.0095 21.0 7.4 19 285-303 14-32 (86)
2 d1zrra1 b.82.1.6 (A:1-179) Aci 7.9 45 0.0033 27.9 0.4 19 44-62 65-83 (179)
3 d2nwwa1 f.49.1.1 (A:12-416) Pr 3.2 1.3E+03 0.095 20.1 8.3 36 163-198 61-96 (405)
4 d1jb0l_ f.31.1.1 (L:) Photosys 3.0 7.9E+02 0.057 19.0 4.8 10 146-155 75-84 (151)
5 d1cola_ f.1.1.1 (A:) Colicin A 2.8 7.5E+02 0.055 20.1 4.8 32 99-130 144-179 (197)
6 d2nwwa1 f.49.1.1 (A:12-416) Pr 2.7 1.3E+03 0.095 20.1 7.4 25 213-238 267-291 (405)
7 d2pila_ d.24.1.1 (A:) Pilin Gc 2.3 8.7E+02 0.064 17.1 4.6 11 293-303 20-30 (158)
8 d1qb5d_ b.40.2.1 (D:) Heat-lab 2.1 8.5E+02 0.062 16.7 3.6 38 46-85 18-55 (99)
9 d1ifqa_ d.110.4.1 (A:) Sec22b 2.1 6.3E+02 0.046 18.7 3.2 37 16-52 23-62 (127)
10 d1xmec1 f.23.9.1 (C:2-34) Bact 2.1 6.5E+02 0.048 13.9 3.4 20 312-331 4-23 (33)
No 1
>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}
Probab=20.88 E-value=1.3e+02 Score=21.03 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=10.1
Q ss_pred HHHHHHHhhHHHHHHHHHh
Q 036333 285 ILSILSRTCVPWLLKLMTS 303 (527)
Q Consensus 285 ~~~~v~r~~~~~l~~~~~~ 303 (527)
+.+.+.|++.+.+.|..+|
T Consensus 14 i~~~i~~~i~~~~~~~~~~ 32 (86)
T d2vv5a3 14 VGLIIARMISNAVNRLMIS 32 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4455566655555554444
No 2
>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella pneumoniae [TaxId: 573]}
Probab=7.93 E-value=45 Score=27.90 Aligned_cols=19 Identities=37% Similarity=0.469 Sum_probs=15.2
Q ss_pred ccccccccccccccCCCCC
Q 036333 44 KEEKSFKLNDVFNLDNDNG 62 (527)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~ 62 (527)
+.+++|+-.|+.++..|++
T Consensus 65 ~~e~Gy~~~D~i~l~p~~p 83 (179)
T d1zrra1 65 VAEKGYQSWDVISLRADNP 83 (179)
T ss_dssp HHHHCCSEEEEECCCTTCT
T ss_pred HHhCCCceEEEEEeCCCCC
Confidence 3457899999999998765
No 3
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=3.21 E-value=1.3e+03 Score=20.09 Aligned_cols=36 Identities=31% Similarity=0.188 Sum_probs=17.9
Q ss_pred cCCchHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 036333 163 EFSTTKLRVVRAVAVLGGLLQIFLFMFLCGITALLF 198 (527)
Q Consensus 163 e~d~~~lr~~~~~~~~~~~~~~~l~~~~~~~~~~~l 198 (527)
+++-++..|.+.+.+..-+...++...++....+.+
T Consensus 61 ~L~~~~~gkl~~~ti~~~l~tt~iA~~igl~~~~~~ 96 (405)
T d2nwwa1 61 SISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLF 96 (405)
T ss_dssp SCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hccchhcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455666666655554444444444444444443
No 4
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=2.97 E-value=7.9e+02 Score=19.03 Aligned_cols=10 Identities=10% Similarity=0.348 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 036333 146 ETVAQFGVIF 155 (527)
Q Consensus 146 ~~l~~lgl~~ 155 (527)
..++.+|++.
T Consensus 75 Gllsaiglv~ 84 (151)
T d1jb0l_ 75 GLISGIALIL 84 (151)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 5
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=2.81 E-value=7.5e+02 Score=20.10 Aligned_cols=32 Identities=31% Similarity=0.392 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCc----hHHHHHHHHHH
Q 036333 99 LVVVIVFATCGGIAFACAGQP----VITGYLLAGSI 130 (527)
Q Consensus 99 l~lil~~a~~~~~l~~rl~lP----~iig~IlaGil 130 (527)
...+.+++..++.++-.++.| .++|++++|++
T Consensus 144 ~va~~~fs~~~~~~~~~~g~~~~~iGI~g~li~~~v 179 (197)
T d1cola_ 144 SVALGIFSATLGAYALSLGVPAIAVGIAGILLAAVV 179 (197)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHH
Confidence 344445677777777788888 24555555544
No 6
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=2.75 E-value=1.3e+03 Score=20.10 Aligned_cols=25 Identities=16% Similarity=0.045 Sum_probs=14.4
Q ss_pred hhccHHHHHHHHhhccccCCchhHHH
Q 036333 213 SMSSTAVVLKFLMEKNSTNALHGQVT 238 (527)
Q Consensus 213 s~TS~~vv~~~L~e~~~~~s~~g~l~ 238 (527)
|....|+..+..++.+ .+++..+..
T Consensus 267 S~atlP~~~~~~~~~g-v~~~i~~fv 291 (405)
T d2nwwa1 267 SSGTLPVTMRVAKEMG-ISEGIYSFT 291 (405)
T ss_dssp TGGGHHHHHHHHHTTT-CCTTTHHHH
T ss_pred cccccHHHHHHHHHcC-CCcccccee
Confidence 4445677778776655 344444433
No 7
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=2.28 E-value=8.7e+02 Score=17.11 Aligned_cols=11 Identities=9% Similarity=0.153 Sum_probs=5.6
Q ss_pred hHHHHHHHHHh
Q 036333 293 CVPWLLKLMTS 303 (527)
Q Consensus 293 ~~~~l~~~~~~ 303 (527)
.+|.+.++..+
T Consensus 20 a~P~~~~~~~~ 30 (158)
T d2pila_ 20 ALPAYQDYTAR 30 (158)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34555555444
No 8
>d1qb5d_ b.40.2.1 (D:) Heat-labile toxin {Escherichia coli, type IIB [TaxId: 562]}
Probab=2.14 E-value=8.5e+02 Score=16.69 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=23.3
Q ss_pred ccccccccccccCCCCCCCCCCceecCCCCeEEecCCCCC
Q 036333 46 EKSFKLNDVFNLDNDNGAEETPTLIDRKDNVFIISNFKSK 85 (527)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~ 85 (527)
..++|+..-..=-|.| -|---++.+.+|+|..+.-+|+
T Consensus 18 v~gv~l~kyi~din~n--t~g~yvvs~tggvw~i~~~~dy 55 (99)
T d1qb5d_ 18 VEGVELTKYISDINNN--TDGMYVVSSTGGVWRISRAKDY 55 (99)
T ss_dssp EEEECEEEEEEECSTT--TCEEEEEETTSCEEEECCCSST
T ss_pred HhhhhhhhhhhhccCC--CccEEEEecCCcEEEecCCCCC
Confidence 4556666554322233 2333344477999999999987
No 9
>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.12 E-value=6.3e+02 Score=18.73 Aligned_cols=37 Identities=11% Similarity=0.156 Sum_probs=21.2
Q ss_pred CCcccchHhHHHHHHHHHhhhCCCCCccc---cccccccc
Q 036333 16 AGSFNNSVAEKQAVLETVARVKPKKNDTK---EEKSFKLN 52 (527)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 52 (527)
.+++|.+..+++....++-|--+..++++ +.+.|.||
T Consensus 23 ~~~~~~~~~~~k~qak~ll~kl~~~~~~r~s~~~~~y~fH 62 (127)
T d1ifqa_ 23 DEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFH 62 (127)
T ss_dssp TTCCHHHHHHHHHHHHHHHTTCCTTSCSEEEEEETTEEEE
T ss_pred ccccchhHHHHHHHHHHHHHhCCCCCCCcEEEEECCEEEE
Confidence 45667777777777777765443322232 34556666
No 10
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=2.08 E-value=6.5e+02 Score=13.91 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=9.8
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 036333 312 QTNELYQLASVAFCLLVAWC 331 (527)
Q Consensus 312 ~~~e~~~~~~l~~~l~~~~~ 331 (527)
+...+-++.++.+.++..|+
T Consensus 4 p~gal~vi~il~l~ilvfw~ 23 (33)
T d1xmec1 4 PKGALAVILVLTLTILVFWL 23 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHH
Confidence 34444444555555555543
Done!