BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036335
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 95.9 bits (237), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 74/120 (61%), Gaps = 1/120 (0%)
Query: 2 QGLIEEEKLDSFNAPYYGPCPEELKMEIQKEGSFIIDRLDHFEIDWDGGVEELTSTMSLP 61
+GLIEEEK+D FN P Y P P E++ EI KEGSF+ID ++ EI W ++ S+
Sbjct: 239 EGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGSVE 298
Query: 62 LARGQRVAKTIRAVVESMFELHFGRGIMDLLFTRYAQIVDGYLSKNSANYINLVISIIKK 121
G VA+ +RAV E + HFG I++ +F RY ++ +SK +IN+++S+I+K
Sbjct: 299 -EEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIERMSKEKTKFINVIVSLIRK 357
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 80.5 bits (197), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/121 (38%), Positives = 70/121 (57%), Gaps = 5/121 (4%)
Query: 1 MQGLIEEEKLDSFNAPYYGPCPEELKMEIQKEGSFIIDRLDHFEIDWDGGVEELTSTMSL 60
++G +EEEKLDSFN P Y P EE+K +++EGSF I L+ F++ +D G ++
Sbjct: 251 VEGHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLETFKVLYDAGF-----SIDD 305
Query: 61 PLARGQRVAKTIRAVVESMFELHFGRGIMDLLFTRYAQIVDGYLSKNSANYINLVISIIK 120
+ + VA ++RAV E + HFG I+ +F R+A+ L Y NL+IS+ K
Sbjct: 306 EHIKAEYVASSVRAVYEPILASHFGEAIIPDIFHRFAKHAAKVLPLGKGFYNNLIISLAK 365
Query: 121 K 121
K
Sbjct: 366 K 366
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 67/129 (51%), Gaps = 8/129 (6%)
Query: 1 MQGLIEEEKLDSFNAPYYGPCPEELKMEIQKEGSFIIDRLDHFEIDWDGGV---EELTST 57
++G +EEEKLDSFN P Y P EE+K +++EGSF I L+ F +D G ++
Sbjct: 250 IEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDAGFSIDDDYQGR 309
Query: 58 MSLPL-----ARGQRVAKTIRAVVESMFELHFGRGIMDLLFTRYAQIVDGYLSKNSANYI 112
P+ AR VA +R++ E + HFG I+ L R A+ L Y
Sbjct: 310 SHSPVSCDEHARAAHVASVVRSIYEPILASHFGEAILPDLSHRIAKNAAKVLRSGKGFYD 369
Query: 113 NLVISIIKK 121
+++IS+ KK
Sbjct: 370 SVIISLAKK 378
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 52.0 bits (123), Expect = 9e-08, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 2 QGLIEEEKLDSFNAPYYGPCPEELKMEIQKEGSFIIDRLDHFEIDWDGGVEELTSTMSLP 61
+GL+ EK D FN P Y P ++ K + GSF ID+L + + GG + +
Sbjct: 257 EGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKL----VVYKGGSPLVVNEPDDA 312
Query: 62 LARGQRVAKTIRAVVESMFELHFGRGIMDLLFTR 95
G+ A + R+V + E H G + + LF+R
Sbjct: 313 SEVGRAFASSCRSVAGVLVEAHIGEELSNKLFSR 346
>pdb|2PO5|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With His
263 Replaced By Cys
pdb|2PO5|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With His
263 Replaced By Cys
Length = 359
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 14/108 (12%)
Query: 29 IQKEGSFIIDRLDHFEIDWDGGVEELTSTMSLPLA---RG----QRVAKTIRAVVESMFE 81
IQ I+ LDHF ++ V L S SLP++ RG Q V+ T++ V+E +
Sbjct: 170 IQCFADHILKELDHFPLEKRSEVVILFSACSLPMSVVNRGDPYPQEVSATVQKVMERLEY 229
Query: 82 LHFGR-------GIMDLLFTRYAQIVDGYLSKNSANYINLVISIIKKH 122
+ R G M L + + + G + N + + I+ H
Sbjct: 230 CNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDH 277
>pdb|2QD2|A Chain A, F110a Variant Of Human Ferrochelatase With Protoheme Bound
pdb|2QD2|B Chain B, F110a Variant Of Human Ferrochelatase With Protoheme Bound
pdb|3HCP|A Chain A, Human Ferrochelatase With Mn And Deuteroporphyrin Bound
pdb|3HCP|B Chain B, Human Ferrochelatase With Mn And Deuteroporphyrin Bound
Length = 359
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 14/108 (12%)
Query: 29 IQKEGSFIIDRLDHFEIDWDGGVEELTSTMSLPLA---RG----QRVAKTIRAVVESMFE 81
IQ I+ LDHF ++ V L S SLP++ RG Q V+ T++ V+E +
Sbjct: 170 IQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEY 229
Query: 82 LHFGR-------GIMDLLFTRYAQIVDGYLSKNSANYINLVISIIKKH 122
+ R G M L + + + G + N + + I+ H
Sbjct: 230 CNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDH 277
>pdb|1HRK|A Chain A, Crystal Structure Of Human Ferrochelatase
pdb|1HRK|B Chain B, Crystal Structure Of Human Ferrochelatase
pdb|2HRC|A Chain A, 1.7 Angstrom Structure Of Human Ferrochelatase Variant
R115l
pdb|2HRC|B Chain B, 1.7 Angstrom Structure Of Human Ferrochelatase Variant
R115l
Length = 359
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 14/108 (12%)
Query: 29 IQKEGSFIIDRLDHFEIDWDGGVEELTSTMSLPLA---RG----QRVAKTIRAVVESMFE 81
IQ I+ LDHF ++ V L S SLP++ RG Q V+ T++ V+E +
Sbjct: 170 IQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEY 229
Query: 82 LHFGR-------GIMDLLFTRYAQIVDGYLSKNSANYINLVISIIKKH 122
+ R G M L + + + G + N + + I+ H
Sbjct: 230 CNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDH 277
>pdb|2QD3|A Chain A, Wild Type Human Ferrochelatase Crystallized With Ammonium
Sulfate
pdb|2QD3|B Chain B, Wild Type Human Ferrochelatase Crystallized With Ammonium
Sulfate
pdb|2QD4|A Chain A, Wild Type Human Ferrochelatase Crystallized With Mncl2
pdb|2QD4|B Chain B, Wild Type Human Ferrochelatase Crystallized With Mncl2
pdb|2QD5|A Chain A, Structure Of Wild Type Human Ferrochelatase In Complex
With A Lead- Porphyrin Compound
pdb|2QD5|B Chain B, Structure Of Wild Type Human Ferrochelatase In Complex
With A Lead- Porphyrin Compound
pdb|3HCN|A Chain A, Hg And Protoporphyrin Bound Human Ferrochelatase
pdb|3HCN|B Chain B, Hg And Protoporphyrin Bound Human Ferrochelatase
pdb|3HCO|A Chain A, Human Ferrochelatase With Cd And Protoporphyrin Ix Bound
pdb|3HCO|B Chain B, Human Ferrochelatase With Cd And Protoporphyrin Ix Bound
pdb|3HCR|A Chain A, Human Ferrochelatase With Deuteroporphyrin And Ni Bound
pdb|3HCR|B Chain B, Human Ferrochelatase With Deuteroporphyrin And Ni Bound
Length = 359
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 14/108 (12%)
Query: 29 IQKEGSFIIDRLDHFEIDWDGGVEELTSTMSLPLA---RG----QRVAKTIRAVVESMFE 81
IQ I+ LDHF ++ V L S SLP++ RG Q V+ T++ V+E +
Sbjct: 170 IQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEY 229
Query: 82 LHFGR-------GIMDLLFTRYAQIVDGYLSKNSANYINLVISIIKKH 122
+ R G M L + + + G + N + + I+ H
Sbjct: 230 CNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDH 277
>pdb|2HRE|A Chain A, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|B Chain B, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|C Chain C, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2HRE|D Chain D, Structure Of Human Ferrochelatase Variant E343k With
Protoporphyrin Ix Bound
pdb|2QD1|A Chain A, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|B Chain B, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|C Chain C, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
pdb|2QD1|D Chain D, 2.2 Angstrom Structure Of The Human Ferrochelatase Variant
E343k With Substrate Bound
Length = 359
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 14/108 (12%)
Query: 29 IQKEGSFIIDRLDHFEIDWDGGVEELTSTMSLPLA---RG----QRVAKTIRAVVESMFE 81
IQ I+ LDHF ++ V L S SLP++ RG Q V+ T++ V+E +
Sbjct: 170 IQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEY 229
Query: 82 LHFGR-------GIMDLLFTRYAQIVDGYLSKNSANYINLVISIIKKH 122
+ R G M L + + + G + N + + I+ H
Sbjct: 230 CNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDH 277
>pdb|2PNJ|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With Phe
337 Replaced By Ala
pdb|2PNJ|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With Phe
337 Replaced By Ala
Length = 359
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 14/108 (12%)
Query: 29 IQKEGSFIIDRLDHFEIDWDGGVEELTSTMSLPLA---RG----QRVAKTIRAVVESMFE 81
IQ I+ LDHF ++ V L S SLP++ RG Q V+ T++ V+E +
Sbjct: 170 IQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEY 229
Query: 82 LHFGR-------GIMDLLFTRYAQIVDGYLSKNSANYINLVISIIKKH 122
+ R G M L + + + G + N + + I+ H
Sbjct: 230 CNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAATSDH 277
>pdb|3AQI|A Chain A, H240a Variant Of Human Ferrochelatase
pdb|3AQI|B Chain B, H240a Variant Of Human Ferrochelatase
Length = 359
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 14/108 (12%)
Query: 29 IQKEGSFIIDRLDHFEIDWDGGVEELTSTMSLPLA---RG----QRVAKTIRAVVESMFE 81
IQ I+ LDHF ++ V L S SLP++ RG Q V+ T++ V+E +
Sbjct: 170 IQCFADAILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEY 229
Query: 82 LHFGR-------GIMDLLFTRYAQIVDGYLSKNSANYINLVISIIKKH 122
+ R G M L + + + G + N + + I+ H
Sbjct: 230 CNPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDH 277
>pdb|2PO7|A Chain A, Crystal Structure Of Human Ferrochelatase Mutant With His
341 Replaced By Cys
pdb|2PO7|B Chain B, Crystal Structure Of Human Ferrochelatase Mutant With His
341 Replaced By Cys
Length = 359
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 29 IQKEGSFIIDRLDHFEIDWDGGVEELTSTMSLPLA---RGQRVAKTIRAVVESMFE 81
IQ I+ LDHF ++ V L S SLP++ RG + + A V+ + E
Sbjct: 170 IQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVME 225
>pdb|4F4D|A Chain A, F337r Variant Of Human Ferrochelatase
pdb|4F4D|B Chain B, F337r Variant Of Human Ferrochelatase
Length = 359
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 29 IQKEGSFIIDRLDHFEIDWDGGVEELTSTMSLPLA---RGQRVAKTIRAVVESMFE 81
IQ I+ LDHF ++ V L S SLP++ RG + + A V+ + E
Sbjct: 170 IQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVME 225
>pdb|3OK8|A Chain A, I-Bar Of Pinkbar
pdb|3OK8|B Chain B, I-Bar Of Pinkbar
Length = 222
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 16 PYYGPCPEELKMEIQKEGSFIIDRLDHFEIDWDGGVEELTSTMSLPLARGQRVAKTIRAV 75
++G + ++ + + FI D H+EI++ L MS ++ K R +
Sbjct: 97 TFHGDLLQHMEKNTKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWRMERKRDKNAREM 156
Query: 76 VESMFELH 83
ES+ LH
Sbjct: 157 KESVNRLH 164
>pdb|1PZ7|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ7|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
Length = 204
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 47 WDGGVEELTSTMSLPLARGQRVAKTIRAVVESMFELHF 84
W GG+E L+ LP A IR V+ ELH
Sbjct: 151 WLGGMERLSVAHKLPKAYSTGFIGCIRDVIVDRQELHL 188
>pdb|1PZ8|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|C Chain C, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ8|D Chain D, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ9|A Chain A, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
pdb|1PZ9|B Chain B, Modulation Of Agrin Function By Alternative Splicing And
Ca2+ Binding
Length = 201
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 47 WDGGVEELTSTMSLPLARGQRVAKTIRAVVESMFELHF 84
W GG+E L+ LP A IR V+ ELH
Sbjct: 148 WLGGMERLSVAHKLPKAYSTGFIGCIRDVIVDRQELHL 185
>pdb|3VR2|A Chain A, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|B Chain B, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR2|C Chain C, Crystal Structure Of Nucleotide-free A3b3 Complex From
Enterococcus Hirae V-atpase [ea3b3]
pdb|3VR3|A Chain A, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|B Chain B, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR3|C Chain C, Crystal Structure Of Amp-pnp Bound A3b3 Complex From
Enterococcus Hirae V-atpase [ba3b3]
pdb|3VR4|A Chain A, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|B Chain B, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR4|C Chain C, Crystal Structure Of Enterococcus Hirae V1-atpase [ev1]
pdb|3VR5|A Chain A, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|B Chain B, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
pdb|3VR5|C Chain C, Crystal Structure Of Nucleotide-free Enterococcus Hirae
V1-atpase [ev1(l)]
Length = 600
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 22 PEELKMEIQK--EGSFIIDRLDHFEIDWDGGVEELTSTMSLPLARGQRVAKTIRAVVESM 79
P +K +QK GSF ID I+ + G++ELT P+ RG+ + + + V +
Sbjct: 159 PNGIKGTVQKIESGSFTIDD-PICVIETEQGLKELTXXQKWPVRRGRPIKQKLNPDVPXI 217
Query: 80 FELHFGRGIMDLLF 93
G+ ++D F
Sbjct: 218 ----TGQRVIDTFF 227
>pdb|1Q56|A Chain A, Nmr Structure Of The B0 Isoform Of The Agrin G3 Domain In
Its Ca2+ Bound State
Length = 195
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 47 WDGGVEELTSTMSLPLARGQRVAKTIRAVVESMFELHF 84
W GG+E L+ LP A IR V+ ELH
Sbjct: 142 WLGGMERLSVAHKLPKAYSTGFIGCIRDVIVDRQELHL 179
>pdb|1R9Y|A Chain A, Bacterial Cytosine Deaminase D314a Mutant.
pdb|1RA5|A Chain A, Bacterial Cytosine Deaminase D314a Mutant Bound To
5-Fluoro-4-(S)- Hydroxyl-3,4-Dihydropyrimidine
Length = 430
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 20 PCPEELKMEIQKEGSFIIDRLDHFEIDWDGGVEELTSTMSL 60
P E L E + G+ ++ + HFE + GVE L T +L
Sbjct: 167 PNGEALLEEALRLGADVVGAIPHFEFTREYGVESLHKTFAL 207
>pdb|1R9X|A Chain A, Bacterial Cytosine Deaminase D314g Mutant.
pdb|1RA0|A Chain A, Bacterial Cytosine Deaminase D314g Mutant Bound To
5-Fluoro-4-(S)- Hydroxy-3,4-Dihydropyrimidine
Length = 430
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 20 PCPEELKMEIQKEGSFIIDRLDHFEIDWDGGVEELTSTMSL 60
P E L E + G+ ++ + HFE + GVE L T +L
Sbjct: 167 PNGEALLEEALRLGADVVGAIPHFEFTREYGVESLHKTFAL 207
>pdb|1R9Z|A Chain A, Bacterial Cytosine Deaminase D314s Mutant.
pdb|1RAK|A Chain A, Bacterial Cytosine Deaminase D314s Mutant Bound To
5-Fluoro-4-(S)- Hydroxyl-3,4-Dihydropyrimidine
Length = 430
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 20 PCPEELKMEIQKEGSFIIDRLDHFEIDWDGGVEELTSTMSL 60
P E L E + G+ ++ + HFE + GVE L T +L
Sbjct: 167 PNGEALLEEALRLGADVVGAIPHFEFTREYGVESLHKTFAL 207
>pdb|4DIN|B Chain B, Novel Localization And Quaternary Structure Of The Pka Ri
Beta Holoenzyme
Length = 381
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 19 GPCPEELKMEIQKEGSFI 36
GPC E LK IQ+ SFI
Sbjct: 360 GPCSEILKRNIQRYNSFI 377
>pdb|1K6W|A Chain A, The Structure Of Escherichia Coli Cytosine Deaminase
pdb|1K70|A Chain A, The Structure Of Escherichia Coli Cytosine Deaminase Bound
To 4- Hydroxy-3,4-Dihydro-1h-Pyrimidin-2-One
Length = 426
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 20 PCPEELKMEIQKEGSFIIDRLDHFEIDWDGGVEELTSTMSL 60
P E L E + G+ ++ + HFE + GVE L T +L
Sbjct: 163 PNGEALLEEALRLGADVVGAIPHFEFTREYGVESLHKTFAL 203
>pdb|3O7U|A Chain A, Crystal Structure Of Cytosine Deaminase From Escherichia
Coli Complexed With Zinc And Phosphono-Cytosine
pdb|3RN6|A Chain A, Crystal Structure Of Cytosine Deaminase From Escherichia
Coli Complexed With Zinc And Isoguanine
pdb|3R0D|A Chain A, Crystal Structure Of Cytosine Deaminase From Escherichia
Coli Complexed With Two Zinc Atoms In The Active Site
Length = 427
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 20 PCPEELKMEIQKEGSFIIDRLDHFEIDWDGGVEELTSTMSL 60
P E L E + G+ ++ + HFE + GVE L T +L
Sbjct: 164 PNGEALLEEALRLGADVVGAIPHFEFTREYGVESLHKTFAL 204
>pdb|3G77|A Chain A, Bacterial Cytosine Deaminase V152aF316CD317G MUTANT
Length = 423
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 20 PCPEELKMEIQKEGSFIIDRLDHFEIDWDGGVEELTSTMSL 60
P E L E + G+ ++ + HFE + GVE L T +L
Sbjct: 160 PNGEALLEEALRLGADVVGAIPHFEFTREYGVESLHKTFAL 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,621,795
Number of Sequences: 62578
Number of extensions: 132807
Number of successful extensions: 328
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 308
Number of HSP's gapped (non-prelim): 28
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)