Query 036335
Match_columns 122
No_of_seqs 102 out of 326
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 20:04:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036335.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036335hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m6e_X S-adenosyl-L-methionnin 100.0 1.4E-32 4.7E-37 222.3 12.7 120 2-122 239-358 (359)
2 2efj_A 3,7-dimethylxanthine me 100.0 6.5E-32 2.2E-36 220.0 11.7 121 2-122 251-379 (384)
3 3b5i_A S-adenosyl-L-methionine 100.0 5.9E-30 2E-34 207.7 12.7 115 1-119 256-374 (374)
4 3ccf_A Cyclopropane-fatty-acyl 94.0 0.44 1.5E-05 35.1 9.3 80 12-105 180-259 (279)
5 3bus_A REBM, methyltransferase 91.5 2.7 9.1E-05 30.4 10.3 67 17-99 191-257 (273)
6 3hem_A Cyclopropane-fatty-acyl 88.0 4.1 0.00014 30.2 9.1 81 18-115 219-299 (302)
7 2yqz_A Hypothetical protein TT 87.9 0.88 3E-05 32.6 5.2 90 17-122 171-263 (263)
8 2p35_A Trans-aconitate 2-methy 84.0 9.3 0.00032 27.1 9.4 73 16-105 164-238 (259)
9 1kpg_A CFA synthase;, cyclopro 81.9 8.5 0.00029 28.0 8.2 25 18-43 204-228 (287)
10 3f4k_A Putative methyltransfer 81.7 12 0.0004 26.6 9.4 83 19-121 173-257 (257)
11 2lmc_A Bacterial RNA polymeras 66.1 5.5 0.00019 25.3 3.0 34 8-41 42-78 (84)
12 2fk8_A Methoxy mycolic acid sy 51.6 60 0.0021 23.8 7.3 26 17-43 229-254 (318)
13 3hnr_A Probable methyltransfer 47.7 13 0.00045 25.6 2.8 31 17-48 176-206 (220)
14 3vjj_A P9-1; 3.00A {Rice black 41.2 16 0.00053 28.8 2.5 31 13-43 287-317 (368)
15 3g5l_A Putative S-adenosylmeth 34.6 29 0.00098 24.5 3.0 29 14-43 188-216 (253)
16 3kkz_A Uncharacterized protein 33.8 1.2E+02 0.0042 21.3 9.5 29 18-47 172-201 (267)
17 3ujc_A Phosphoethanolamine N-m 33.6 1.2E+02 0.0041 21.0 9.3 70 18-103 182-251 (266)
18 1ik9_C DNA ligase IV; DNA END 31.9 36 0.0012 18.1 2.3 18 11-31 16-33 (37)
19 3e8s_A Putative SAM dependent 31.2 34 0.0012 23.2 2.8 27 15-42 182-208 (227)
20 2o57_A Putative sarcosine dime 29.8 1.5E+02 0.0052 21.1 8.3 24 19-43 211-234 (297)
21 2el8_A Signal-transducing adap 28.8 90 0.0031 20.1 4.5 39 3-41 9-52 (118)
22 3e9v_A Protein BTG2; B-cell tr 26.9 79 0.0027 21.2 3.9 36 64-99 9-46 (120)
23 2g72_A Phenylethanolamine N-me 26.9 71 0.0024 23.0 4.0 28 16-44 230-257 (289)
24 1wqu_A C-FES, proto-oncogene t 26.0 23 0.00078 22.9 1.0 40 2-41 3-44 (114)
25 3h2b_A SAM-dependent methyltra 26.0 64 0.0022 21.6 3.5 30 15-45 155-184 (203)
26 1x4c_A Splicing factor, argini 25.6 85 0.0029 19.2 3.8 28 13-43 21-48 (108)
27 3ewt_E Tumor necrosis factor r 24.8 39 0.0013 16.6 1.5 13 21-33 12-24 (25)
28 4efd_A Aminopeptidase; structu 24.7 69 0.0023 26.9 3.9 61 10-79 62-135 (522)
29 1x9t_B N-terminl peptide of fi 24.5 21 0.00073 17.9 0.5 7 11-18 9-15 (26)
30 3e23_A Uncharacterized protein 23.9 76 0.0026 21.5 3.5 33 12-44 151-183 (211)
31 4htf_A S-adenosylmethionine-de 23.8 72 0.0025 22.9 3.5 30 16-46 206-235 (285)
32 3lcc_A Putative methyl chlorid 23.7 93 0.0032 21.5 4.0 31 14-45 179-209 (235)
33 2gb4_A Thiopurine S-methyltran 23.6 86 0.0029 22.7 3.9 27 16-44 202-228 (252)
34 2a14_A Indolethylamine N-methy 23.2 85 0.0029 22.5 3.8 28 16-44 212-239 (263)
35 3m5g_A Hemagglutinin; influenz 23.1 63 0.0022 25.4 3.2 33 5-37 82-114 (317)
36 3on4_A Transcriptional regulat 23.1 67 0.0023 20.7 3.0 40 64-104 32-73 (191)
37 3bkx_A SAM-dependent methyltra 22.6 2E+02 0.0069 20.1 8.6 25 18-43 195-219 (275)
38 2g7s_A Transcriptional regulat 22.4 70 0.0024 20.6 3.0 28 75-102 40-69 (194)
39 3hpw_C Protein CCDA; alpha+bet 22.3 39 0.0013 17.9 1.3 15 22-36 16-30 (36)
40 1ri5_A MRNA capping enzyme; me 22.3 62 0.0021 23.0 2.9 28 16-44 224-251 (298)
41 3bqz_B HTH-type transcriptiona 22.2 76 0.0026 20.6 3.2 38 65-103 25-64 (194)
42 1gq6_A Proclavaminate amidino 21.9 2.5E+02 0.0087 21.0 6.5 54 19-83 254-309 (313)
43 3o59_X DNA polymerase II large 21.7 47 0.0016 25.8 2.2 17 16-32 201-217 (300)
44 3eyk_A Hemagglutinin HA1 chain 21.4 53 0.0018 25.9 2.4 33 5-37 80-112 (323)
45 3pas_A TETR family transcripti 21.2 77 0.0026 20.4 3.0 37 66-103 32-70 (195)
46 3dcf_A Transcriptional regulat 21.0 76 0.0026 21.0 3.0 39 65-104 54-94 (218)
47 3kz9_A SMCR; transcriptional r 21.0 76 0.0026 20.7 3.0 39 65-104 40-80 (206)
48 2gfn_A HTH-type transcriptiona 20.9 81 0.0028 21.3 3.2 38 65-103 32-71 (209)
49 2v57_A TETR family transcripti 20.8 79 0.0027 20.5 3.0 40 64-104 34-75 (190)
50 3sm3_A SAM-dependent methyltra 20.8 94 0.0032 21.0 3.5 29 17-46 182-210 (235)
51 3knw_A Putative transcriptiona 20.4 80 0.0027 20.8 3.0 40 64-104 36-77 (212)
52 3frq_A Repressor protein MPHR( 20.3 90 0.0031 20.4 3.2 30 75-104 40-71 (195)
53 1nkv_A Hypothetical protein YJ 20.0 2.2E+02 0.0076 19.6 7.3 24 18-42 163-186 (256)
54 3beg_B Splicing factor, argini 20.0 84 0.0029 19.7 2.9 28 12-42 21-48 (115)
55 3bru_A Regulatory protein, TET 20.0 82 0.0028 21.0 3.0 37 66-103 54-92 (222)
No 1
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=100.00 E-value=1.4e-32 Score=222.27 Aligned_cols=120 Identities=40% Similarity=0.705 Sum_probs=109.1
Q ss_pred CCCcccccCCccccCccCCCHHHHHHHHHhcCceeEeeeeeeeccCCCCcccccccCCcchhhHHHHHHHHHHHHHHHHH
Q 036335 2 QGLIEEEKLDSFNAPYYGPCPEELKMEIQKEGSFIIDRLDHFEIDWDGGVEELTSTMSLPLARGQRVAKTIRAVVESMFE 81 (122)
Q Consensus 2 eGlI~eeklDsFNiP~Y~ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~RAv~Epll~ 81 (122)
+|+|++||+|+||+|+|.||++|++++|+++|+|+|+++|+++..|++++++ .+...+....|+.+|+++||++||+|.
T Consensus 239 eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~~~~~~~~~~~~-~d~~~~~~~~g~~~a~~~Ra~~e~ll~ 317 (359)
T 1m6e_X 239 EGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKD-GDGGGSVEEEGYNVARCMRAVAEPLLL 317 (359)
T ss_dssp TTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEEETTCCSSC-TTCCSSTTTTTTHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEEEEeeccCcccch-hhhhhhhhHhHhHhhhhhhhhcchhhH
Confidence 7999999999999999999999999999999999999999999999886442 112234457899999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHhhhhhhcCCCeEEEEEEEeecC
Q 036335 82 LHFGRGIMDLLFTRYAQIVDGYLSKNSANYINLVISIIKKH 122 (122)
Q Consensus 82 ~HFG~~i~deLF~r~~~~v~~~~~~~~~~~~~i~vsL~rk~ 122 (122)
+|||++|||+||+||+++++++++.++.++++++++|+||.
T Consensus 318 ~hfG~~i~d~lf~ry~~~~~~~~~~~~~~~~~~~~~L~k~~ 358 (359)
T 1m6e_X 318 DHFGEAIIEDVFHRYKLLIIERMSKEKTKFINVIVSLIRKS 358 (359)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHSSCCEEEEEEEEEEBCC
T ss_pred HhccHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEEEeCC
Confidence 99999999999999999999999888899999999999984
No 2
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=99.97 E-value=6.5e-32 Score=220.00 Aligned_cols=121 Identities=37% Similarity=0.561 Sum_probs=107.1
Q ss_pred CCCcccccCCccccCccCCCHHHHHHHHHhcCceeEeeeeeeeccCCCC---ccccc--ccC-C--cchhhHHHHHHHHH
Q 036335 2 QGLIEEEKLDSFNAPYYGPCPEELKMEIQKEGSFIIDRLDHFEIDWDGG---VEELT--STM-S--LPLARGQRVAKTIR 73 (122)
Q Consensus 2 eGlI~eeklDsFNiP~Y~ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~---~~~~~--~~~-~--~~~~~~~~~a~~~R 73 (122)
+|+|+++|+|+||+|+|.||++|++++|+++|+|+|+++|+++..|+++ +++.+ .+. . |....|+.+|+++|
T Consensus 251 eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~g~~~a~~iR 330 (384)
T 2efj_A 251 EGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDAGFSIDDDYQGRSHSPVSCDEHARAAHVASVVR 330 (384)
T ss_dssp HTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEEEEEETTTTCCC---------CCSHHHHHHHHHHHHHHHH
T ss_pred hCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEEEEeecccccccccccccccccccccchHhHhHHHhhhhhH
Confidence 6999999999999999999999999999999999999999999999885 33110 001 0 34578999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhcCCCeEEEEEEEeecC
Q 036335 74 AVVESMFELHFGRGIMDLLFTRYAQIVDGYLSKNSANYINLVISIIKKH 122 (122)
Q Consensus 74 Av~Epll~~HFG~~i~deLF~r~~~~v~~~~~~~~~~~~~i~vsL~rk~ 122 (122)
|++||+|.+|||++|||+||+||+++++++++.++.++++++++|+||.
T Consensus 331 a~~epll~~hfG~~i~d~lF~ry~~~~~~~~~~~~~~~~~~~~~L~k~~ 379 (384)
T 2efj_A 331 SIYEPILASHFGEAILPDLSHRIAKNAAKVLRSGKGFYDSVIISLAKKP 379 (384)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHHHHHHTCCEEEEEEEEEEECC
T ss_pred HhhhhhhHHhccHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEEEEcc
Confidence 9999999999999999999999999999999988999999999999984
No 3
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=99.96 E-value=5.9e-30 Score=207.71 Aligned_cols=115 Identities=27% Similarity=0.366 Sum_probs=104.6
Q ss_pred CCCCcccccCCccccCccCCCHHHHHHHHHhcCceeEeeeeeeeccCCCCcccccccCCcchhhHHHHHHHHHHHHHHHH
Q 036335 1 MQGLIEEEKLDSFNAPYYGPCPEELKMEIQKEGSFIIDRLDHFEIDWDGGVEELTSTMSLPLARGQRVAKTIRAVVESMF 80 (122)
Q Consensus 1 ~eGlI~eeklDsFNiP~Y~ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~RAv~Epll 80 (122)
.+|+|+++++|+||+|+|+||++|++++|+++|+|+|+++|+++.+|+++.++ ..+....|+.+|+++||++||+|
T Consensus 256 ~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I~~le~~~~~~~~~~~~----~~~~~~~g~~~a~~~Ra~~e~ll 331 (374)
T 3b5i_A 256 REGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVVYKGGSPLVVNE----PDDASEVGRAFASSCRSVAGVLV 331 (374)
T ss_dssp SSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEEEEEEEEECCCCCCCSS----TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEEEEEEEEeecCCccccc----cchhHHHHHHHHHHHHHhccchh
Confidence 47999999999999999999999999999999999999999999999875432 23446789999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHHHhhhhh--hcCCC--eEEEEEEEe
Q 036335 81 ELHFGRGIMDLLFTRYAQIVDGYLS--KNSAN--YINLVISII 119 (122)
Q Consensus 81 ~~HFG~~i~deLF~r~~~~v~~~~~--~~~~~--~~~i~vsL~ 119 (122)
.+|||++|||+||+||+++++++++ .++.+ ++++++||+
T Consensus 332 ~~hfg~~i~d~lf~ry~~~~~~~~~~~~~~~~~~~~~~~~~l~ 374 (374)
T 3b5i_A 332 EAHIGEELSNKLFSRVESRATSHAKDVLVNLQFFHIVASLSFT 374 (374)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHTCHHHHTTCCCEEEEEEEEEC
T ss_pred HhhccHHHHHHHHHHHHHHHHHhHHHhhhccccceEEEEEEeC
Confidence 9999999999999999999999987 66777 899999985
No 4
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=94.05 E-value=0.44 Score=35.10 Aligned_cols=80 Identities=16% Similarity=0.133 Sum_probs=53.3
Q ss_pred ccccCccCCCHHHHHHHHHhcCceeEeeeeeeeccCCCCcccccccCCcchhhHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 036335 12 SFNAPYYGPCPEELKMEIQKEGSFIIDRLDHFEIDWDGGVEELTSTMSLPLARGQRVAKTIRAVVESMFELHFGRGIMDL 91 (122)
Q Consensus 12 sFNiP~Y~ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~RAv~Epll~~HFG~~i~de 91 (122)
.+.-|.+.++.+++++++++.| |++.+++.+..++.. .. +...+..++++...|++. .++.+..++
T Consensus 180 ~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~~~~~~-~~-----------~~~~~~~~l~~~~~~~~~-~~~~~~~~~ 245 (279)
T 3ccf_A 180 QALNPWYFPSIGEYVNILEKQG-FDVTYAALFNRPTTL-AE-----------GEFGMANWIQMFASAFLV-GLTPDQQVQ 245 (279)
T ss_dssp GGGCCCCCCCHHHHHHHHHHHT-EEEEEEEEEECCEEC-SS-----------GGGHHHHHHHHHCHHHHT-TCCHHHHHH
T ss_pred cCcCceeCCCHHHHHHHHHHcC-CEEEEEEEecccccc-cC-----------CHHHHHHHHHHhhHHHhc-cCCHHHHHH
Confidence 3455778899999999999999 999888877544322 10 112344455555555553 467777888
Q ss_pred HHHHHHHHHhhhhh
Q 036335 92 LFTRYAQIVDGYLS 105 (122)
Q Consensus 92 LF~r~~~~v~~~~~ 105 (122)
+..++.+.+.++..
T Consensus 246 ~~~~~~~~~~~~~~ 259 (279)
T 3ccf_A 246 LIRKVEATLQDKLY 259 (279)
T ss_dssp HHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHhhcc
Confidence 88888777776543
No 5
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=91.47 E-value=2.7 Score=30.40 Aligned_cols=67 Identities=7% Similarity=0.109 Sum_probs=43.6
Q ss_pred ccCCCHHHHHHHHHhcCceeEeeeeeeeccCCCCcccccccCCcchhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 036335 17 YYGPCPEELKMEIQKEGSFIIDRLDHFEIDWDGGVEELTSTMSLPLARGQRVAKTIRAVVESMFELHFGRGIMDLLFTRY 96 (122)
Q Consensus 17 ~Y~ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~RAv~Epll~~HFG~~i~deLF~r~ 96 (122)
.+.++.+++++++++.| |++.+++.+...+.. .-..+...+++..+. +..++|++..+.+...+
T Consensus 191 ~~~~~~~~~~~~l~~aG-f~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 254 (273)
T 3bus_A 191 LSLGGIDEYESDVRQAE-LVVTSTVDISAQARP--------------SLVKTAEAFENARSQ-VEPFMGAEGLDRMIATF 254 (273)
T ss_dssp CCCCCHHHHHHHHHHTT-CEEEEEEECHHHHTT--------------HHHHHHHHHHHTHHH-HHHHHCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHcC-CeEEEEEECcHhHHH--------------HHHHHHHHHHHhHHH-HHhhcCHHHHHHHHHHH
Confidence 35689999999999999 888887766433211 112223333443444 45778988888887777
Q ss_pred HHH
Q 036335 97 AQI 99 (122)
Q Consensus 97 ~~~ 99 (122)
...
T Consensus 255 ~~~ 257 (273)
T 3bus_A 255 RGL 257 (273)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 6
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=87.96 E-value=4.1 Score=30.17 Aligned_cols=81 Identities=10% Similarity=0.158 Sum_probs=45.4
Q ss_pred cCCCHHHHHHHHHhcCceeEeeeeeeeccCCCCcccccccCCcchhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 036335 18 YGPCPEELKMEIQKEGSFIIDRLDHFEIDWDGGVEELTSTMSLPLARGQRVAKTIRAVVESMFELHFGRGIMDLLFTRYA 97 (122)
Q Consensus 18 Y~ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~RAv~Epll~~HFG~~i~deLF~r~~ 97 (122)
+.||++++.+.+++.| |++..++.+...+. ..-..+...+++-.+- +.+.||++..+ ++..|-
T Consensus 219 ~~~s~~~~~~~l~~aG-f~~~~~~~~~~~y~--------------~tl~~w~~~~~~~~~~-~~~~~~~~~~~-~w~~yl 281 (302)
T 3hem_A 219 RLPRISQVDYYSSNAG-WKVERYHRIGANYV--------------PTLNAWADALQAHKDE-AIALKGQETCD-IYMHYL 281 (302)
T ss_dssp CCCCHHHHHHHHHHHT-CEEEEEEECGGGHH--------------HHHHHHHHHHHHTHHH-HHHHHCHHHHH-HHHHHH
T ss_pred CCCCHHHHHHHHHhCC-cEEEEEEeCchhHH--------------HHHHHHHHHHHHhHHH-HHHHhCHHHHH-HHHHHH
Confidence 7899999999999988 88888876533211 1122222233333322 34457766554 455554
Q ss_pred HHHhhhhhhcCCCeEEEE
Q 036335 98 QIVDGYLSKNSANYINLV 115 (122)
Q Consensus 98 ~~v~~~~~~~~~~~~~i~ 115 (122)
...+..+........+++
T Consensus 282 ~~~~~~f~~~~~~~~q~~ 299 (302)
T 3hem_A 282 RGCSDLFRDKYTDVCQFT 299 (302)
T ss_dssp HHHHHHHHTTSSEEEEEE
T ss_pred HHHHHHHhCCCCeEEEEE
Confidence 444444555554444433
No 7
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=87.90 E-value=0.88 Score=32.62 Aligned_cols=90 Identities=7% Similarity=0.064 Sum_probs=56.1
Q ss_pred ccCCCHHHHHHHHHhcCceeEeeeeeeeccCCCCcccccccCCcchhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 036335 17 YYGPCPEELKMEIQKEGSFIIDRLDHFEIDWDGGVEELTSTMSLPLARGQRVAKTIRAVVESMFELHFGRGIMDLLFTRY 96 (122)
Q Consensus 17 ~Y~ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~RAv~Epll~~HFG~~i~deLF~r~ 96 (122)
.+.++.+++++++++.| |++...+.. .|.. . .+...+...+++.+.|.+ .+.+++..+++..++
T Consensus 171 ~~~~~~~~~~~~l~~~G-f~~~~~~~~--~~~~-~-----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 234 (263)
T 2yqz_A 171 LHAKRLKEVEEALRRLG-LKPRTREVA--RWRE-E-----------RTPREALEALSERLYSFT-QGLPEPVHARVMERL 234 (263)
T ss_dssp HHHHHHHHHHHHHHHTT-CCCEEEEEE--EEEE-E-----------ECHHHHHHHHHTTCSGGG-SSSCHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHcC-CCcceEEEe--eeec-C-----------CCHHHHHHHHHHhhcccc-cCCCHHHHHHHHHHH
Confidence 34568899999999999 887766544 3322 0 123444555555444543 467788888888888
Q ss_pred HHHHhhhhhhcC---CCeEEEEEEEeecC
Q 036335 97 AQIVDGYLSKNS---ANYINLVISIIKKH 122 (122)
Q Consensus 97 ~~~v~~~~~~~~---~~~~~i~vsL~rk~ 122 (122)
.+.+.+...... .-...+++..-||+
T Consensus 235 ~~~l~~~~~~~~~~~~~~~~~~~~~~rkp 263 (263)
T 2yqz_A 235 WAWAEAELGDLDRPFPVEKRFLLRVSRLG 263 (263)
T ss_dssp HHHHHHHSSCTTSCEEEEEEEEEEEEECC
T ss_pred HHHHHHhcCCcCccccccceeEEEeeecC
Confidence 888877654322 22345566666664
No 8
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=83.98 E-value=9.3 Score=27.06 Aligned_cols=73 Identities=7% Similarity=0.097 Sum_probs=47.4
Q ss_pred CccCCCHHHHHHHHHhcCceeEeeeeeee-ccCCCCcccccccCCcchhhHHHHHHHHHHH-HHHHHHHhhhhhhHHHHH
Q 036335 16 PYYGPCPEELKMEIQKEGSFIIDRLDHFE-IDWDGGVEELTSTMSLPLARGQRVAKTIRAV-VESMFELHFGRGIMDLLF 93 (122)
Q Consensus 16 P~Y~ps~eEv~~~Ie~eGsF~I~~le~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~RAv-~Epll~~HFG~~i~deLF 93 (122)
+...++.+++++++++.| |+|+..+... ..+ .+...+..++++. +.+.+ .+++.+-.+++.
T Consensus 164 ~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~~~---------------~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~ 226 (259)
T 2p35_A 164 RKPLPPPSDYFNALSPKS-SRVDVWHTVYNHPM---------------KDADSIVEWVKGTGLRPYL-AAAGEENREAFL 226 (259)
T ss_dssp -CCCCCHHHHHHHHGGGE-EEEEEEEEEEEEEE---------------SCHHHHHHHHTTTTTTHHH-HTTCGGGHHHHH
T ss_pred ccCCCCHHHHHHHHHhcC-CceEEEEEEeeecc---------------CCchHHhhhhhcCcchHHH-HhCCHHHHHHHH
Confidence 456689999999999998 6776555321 111 1234455566654 33444 467777888888
Q ss_pred HHHHHHHhhhhh
Q 036335 94 TRYAQIVDGYLS 105 (122)
Q Consensus 94 ~r~~~~v~~~~~ 105 (122)
.++.+.+.+++.
T Consensus 227 ~~~~~~~~~~~~ 238 (259)
T 2p35_A 227 ADYTRRIAAAYP 238 (259)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHhCC
Confidence 888888887654
No 9
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=81.85 E-value=8.5 Score=27.99 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=20.6
Q ss_pred cCCCHHHHHHHHHhcCceeEeeeeee
Q 036335 18 YGPCPEELKMEIQKEGSFIIDRLDHF 43 (122)
Q Consensus 18 Y~ps~eEv~~~Ie~eGsF~I~~le~~ 43 (122)
+.||++++++++++.| |++.+++.+
T Consensus 204 ~~~s~~~~~~~l~~aG-f~~~~~~~~ 228 (287)
T 1kpg_A 204 RLPSIPMVQECASANG-FTVTRVQSL 228 (287)
T ss_dssp CCCCHHHHHHHHHTTT-CEEEEEEEC
T ss_pred CCCCHHHHHHHHHhCC-cEEEEEEeC
Confidence 4579999999999977 888877755
No 10
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=81.71 E-value=12 Score=26.55 Aligned_cols=83 Identities=13% Similarity=0.032 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHhcCceeEeeeeeeec-cCCC-CcccccccCCcchhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 036335 19 GPCPEELKMEIQKEGSFIIDRLDHFEI-DWDG-GVEELTSTMSLPLARGQRVAKTIRAVVESMFELHFGRGIMDLLFTRY 96 (122)
Q Consensus 19 ~ps~eEv~~~Ie~eGsF~I~~le~~~~-~~~~-~~~~~~~~~~~~~~~~~~~a~~~RAv~Epll~~HFG~~i~deLF~r~ 96 (122)
.++.+++.+++++.| |++.....+.. .|.. +.. ..+...+.+...|-+....+++-++.
T Consensus 173 ~~~~~~~~~~l~~aG-f~~v~~~~~~~~~w~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (257)
T 3f4k_A 173 ISVIPTCIDKMERAG-YTPTAHFILPENCWTEHYFA------------------PQDEVRETFMKEHAGNKTAMDFMKGQ 233 (257)
T ss_dssp CCBHHHHHHHHHHTT-EEEEEEEECCGGGTCCCCCH------------------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCC-CeEEEEEECChhhHHHHHHH------------------HHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 568999999999988 88777665543 3632 111 12233444455566666666666666
Q ss_pred HHHHhhhhhhcCCCeEEEEEEEeec
Q 036335 97 AQIVDGYLSKNSANYINLVISIIKK 121 (122)
Q Consensus 97 ~~~v~~~~~~~~~~~~~i~vsL~rk 121 (122)
..-...+ ......+-..++.++|+
T Consensus 234 ~~~~~~~-~~~~~~~g~~~~v~~k~ 257 (257)
T 3f4k_A 234 QYERSLY-SKYKDYYGYVFYIGQKR 257 (257)
T ss_dssp HHHHHHH-HHHTTTEEEEEEEEEEC
T ss_pred HHHHHHH-HHhCCccceEEEEEecC
Confidence 6555544 22244556667777764
No 11
>2lmc_A Bacterial RNA polymerase inhibitor; transferase, transcription; NMR {Enterobacteria phage T7} PDB: 2wnm_A
Probab=66.14 E-value=5.5 Score=25.31 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=28.5
Q ss_pred ccCCccccCccCCCHHHHHHHHH---hcCceeEeeee
Q 036335 8 EKLDSFNAPYYGPCPEELKMEIQ---KEGSFIIDRLD 41 (122)
Q Consensus 8 eklDsFNiP~Y~ps~eEv~~~Ie---~eGsF~I~~le 41 (122)
-+..||-+|+|+-|.+|--+.-+ .+--|.+.|+.
T Consensus 42 g~~~s~EVPV~A~sLdEAlE~AE~eYeeaGF~V~RVR 78 (84)
T 2lmc_A 42 SSEHSFEVPIYAETLDEALELAEWQYVPAGFEVTRVR 78 (84)
T ss_dssp CSSCEEEEEECCSSHHHHHHHHHHTTGGGTCEEEEEE
T ss_pred cccceEEEeeecccHHHHHHHHHHHhhhccceEEEec
Confidence 35679999999999999988888 45678988876
No 12
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=51.64 E-value=60 Score=23.76 Aligned_cols=26 Identities=19% Similarity=0.135 Sum_probs=20.5
Q ss_pred ccCCCHHHHHHHHHhcCceeEeeeeee
Q 036335 17 YYGPCPEELKMEIQKEGSFIIDRLDHF 43 (122)
Q Consensus 17 ~Y~ps~eEv~~~Ie~eGsF~I~~le~~ 43 (122)
.+.||.+++++++++.| |++.+++.+
T Consensus 229 ~~~~s~~~~~~~l~~aG-f~~~~~~~~ 254 (318)
T 2fk8_A 229 GRLPSTEMMVEHGEKAG-FTVPEPLSL 254 (318)
T ss_dssp CCCCCHHHHHHHHHHTT-CBCCCCEEC
T ss_pred CcCCCHHHHHHHHHhCC-CEEEEEEec
Confidence 35679999999999877 777766654
No 13
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=47.74 E-value=13 Score=25.59 Aligned_cols=31 Identities=13% Similarity=0.151 Sum_probs=25.0
Q ss_pred ccCCCHHHHHHHHHhcCceeEeeeeeeeccCC
Q 036335 17 YYGPCPEELKMEIQKEGSFIIDRLDHFEIDWD 48 (122)
Q Consensus 17 ~Y~ps~eEv~~~Ie~eGsF~I~~le~~~~~~~ 48 (122)
.|.|+.+++++++++.| |+|...+.....|-
T Consensus 176 ~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~w~ 206 (220)
T 3hnr_A 176 EYYTRIPVMQTIFENNG-FHVTFTRLNHFVWV 206 (220)
T ss_dssp SCCCBHHHHHHHHHHTT-EEEEEEECSSSEEE
T ss_pred hhcCCHHHHHHHHHHCC-CEEEEeeccceEEE
Confidence 47789999999999999 68888886655554
No 14
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=41.20 E-value=16 Score=28.81 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=23.5
Q ss_pred cccCccCCCHHHHHHHHHhcCceeEeeeeee
Q 036335 13 FNAPYYGPCPEELKMEIQKEGSFIIDRLDHF 43 (122)
Q Consensus 13 FNiP~Y~ps~eEv~~~Ie~eGsF~I~~le~~ 43 (122)
|-+|--...+.++++.|.++|.|++-.....
T Consensus 287 fqL~Slistp~~I~e~i~K~GLFk~it~~~~ 317 (368)
T 3vjj_A 287 FQLSSLISTPALIREKIAKEGLFKIITSNTL 317 (368)
T ss_dssp HHCSSCCCCCHHHHHHHHHSCSEEECC----
T ss_pred HHhhhhccChHHHHHHHHhcCceEEEecccc
Confidence 4567777889999999999999998766544
No 15
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=34.63 E-value=29 Score=24.46 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=23.6
Q ss_pred ccCccCCCHHHHHHHHHhcCceeEeeeeee
Q 036335 14 NAPYYGPCPEELKMEIQKEGSFIIDRLDHF 43 (122)
Q Consensus 14 NiP~Y~ps~eEv~~~Ie~eGsF~I~~le~~ 43 (122)
....|..|.+++++++++.| |++.+++..
T Consensus 188 ~~~~~~~t~~~~~~~l~~aG-F~~~~~~e~ 216 (253)
T 3g5l_A 188 DVQKYHRTVTTYIQTLLKNG-FQINSVIEP 216 (253)
T ss_dssp EEEEECCCHHHHHHHHHHTT-EEEEEEECC
T ss_pred cCccEecCHHHHHHHHHHcC-CeeeeeecC
Confidence 34566779999999999999 898887754
No 16
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=33.78 E-value=1.2e+02 Score=21.30 Aligned_cols=29 Identities=14% Similarity=0.062 Sum_probs=22.8
Q ss_pred cCCCHHHHHHHHHhcCceeEeeeeeeec-cC
Q 036335 18 YGPCPEELKMEIQKEGSFIIDRLDHFEI-DW 47 (122)
Q Consensus 18 Y~ps~eEv~~~Ie~eGsF~I~~le~~~~-~~ 47 (122)
..++.+++.+++++.| |++...+.+.. .|
T Consensus 172 ~~~~~~~~~~~l~~aG-f~~v~~~~~~~~~w 201 (267)
T 3kkz_A 172 EIDTIPNQVAKIHKAG-YLPVATFILPENCW 201 (267)
T ss_dssp TCEEHHHHHHHHHHTT-EEEEEEEECCGGGT
T ss_pred CCCCHHHHHHHHHHCC-CEEEEEEECCHhHH
Confidence 4679999999999999 88877776643 35
No 17
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=33.59 E-value=1.2e+02 Score=21.02 Aligned_cols=70 Identities=13% Similarity=-0.007 Sum_probs=38.8
Q ss_pred cCCCHHHHHHHHHhcCceeEeeeeeeeccCCCCcccccccCCcchhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 036335 18 YGPCPEELKMEIQKEGSFIIDRLDHFEIDWDGGVEELTSTMSLPLARGQRVAKTIRAVVESMFELHFGRGIMDLLFTRYA 97 (122)
Q Consensus 18 Y~ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~RAv~Epll~~HFG~~i~deLF~r~~ 97 (122)
..++.+++++++++.| |++.+.+.+...+. .........+++..+. +.+.+|++..+.+-....
T Consensus 182 ~~~~~~~~~~~l~~~G-f~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 245 (266)
T 3ujc_A 182 TLITVEEYADILTACN-FKNVVSKDLSDYWN--------------QLLEVEHKYLHENKEE-FLKLFSEKKFISLDDGWS 245 (266)
T ss_dssp CCCCHHHHHHHHHHTT-CEEEEEEECHHHHH--------------HHHHHHHHHHHHTHHH-HHHHSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcC-CeEEEEEeCCHHHH--------------HHHHHHHHHHHhCHHH-HHHhcCHHHHHHHHHHHH
Confidence 4679999999999988 77766664432211 0111122222222333 334577777776666666
Q ss_pred HHHhhh
Q 036335 98 QIVDGY 103 (122)
Q Consensus 98 ~~v~~~ 103 (122)
..+..+
T Consensus 246 ~~~~~~ 251 (266)
T 3ujc_A 246 RKIKDS 251 (266)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
No 18
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=31.95 E-value=36 Score=18.11 Aligned_cols=18 Identities=22% Similarity=0.113 Sum_probs=12.6
Q ss_pred CccccCccCCCHHHHHHHHHh
Q 036335 11 DSFNAPYYGPCPEELKMEIQK 31 (122)
Q Consensus 11 DsFNiP~Y~ps~eEv~~~Ie~ 31 (122)
|||--|+ +++|||.++.+
T Consensus 16 DSY~rd~---t~~eLk~il~~ 33 (37)
T 1ik9_C 16 DSYFIDT---DLNQLKEVFSG 33 (37)
T ss_dssp CBSSSCC---CHHHHHHHHHT
T ss_pred ccccCcC---CHHHHHHHHHH
Confidence 4444444 79999998864
No 19
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=31.23 E-value=34 Score=23.18 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=22.7
Q ss_pred cCccCCCHHHHHHHHHhcCceeEeeeee
Q 036335 15 APYYGPCPEELKMEIQKEGSFIIDRLDH 42 (122)
Q Consensus 15 iP~Y~ps~eEv~~~Ie~eGsF~I~~le~ 42 (122)
.+.|..+.+++++++++.| |++.+++.
T Consensus 182 ~~~~~~~~~~~~~~l~~aG-f~~~~~~~ 208 (227)
T 3e8s_A 182 MPWYFRTLASWLNALDMAG-LRLVSLQE 208 (227)
T ss_dssp EEEEECCHHHHHHHHHHTT-EEEEEEEC
T ss_pred ceEEEecHHHHHHHHHHcC-CeEEEEec
Confidence 4567789999999999988 88888775
No 20
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=29.77 E-value=1.5e+02 Score=21.12 Aligned_cols=24 Identities=8% Similarity=-0.148 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHhcCceeEeeeeee
Q 036335 19 GPCPEELKMEIQKEGSFIIDRLDHF 43 (122)
Q Consensus 19 ~ps~eEv~~~Ie~eGsF~I~~le~~ 43 (122)
.++.+++++++++.| |++.+++.+
T Consensus 211 ~~~~~~~~~~l~~aG-f~~~~~~~~ 234 (297)
T 2o57_A 211 MGSLGLYRSLAKECG-LVTLRTFSR 234 (297)
T ss_dssp CCCHHHHHHHHHHTT-EEEEEEEEC
T ss_pred CCCHHHHHHHHHHCC-CeEEEEEEC
Confidence 569999999999988 887777654
No 21
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens}
Probab=28.75 E-value=90 Score=20.07 Aligned_cols=39 Identities=15% Similarity=0.208 Sum_probs=29.0
Q ss_pred CCcccccCCccccCccCC--CHHHHHHHHHh---cCceeEeeee
Q 036335 3 GLIEEEKLDSFNAPYYGP--CPEELKMEIQK---EGSFIIDRLD 41 (122)
Q Consensus 3 GlI~eeklDsFNiP~Y~p--s~eEv~~~Ie~---eGsF~I~~le 41 (122)
-|..|.+..-=+.|.|.. |-+|.++++.+ +|+|-|-.-+
T Consensus 9 ~l~~e~~r~~~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~ 52 (118)
T 2el8_A 9 VLAKEEARRALETPSCFLKVSRLEAQLLLERYPECGNLLLRPSG 52 (118)
T ss_dssp CCCSCCCCCCSSSCTTCCCCCHHHHHHHHHHSSTTCSBEEEECC
T ss_pred HHHHHHhccccCCCceecCCCHHHHHHHHhhCCCCcEEEEeeCC
Confidence 345555666667889987 66888888865 8999997655
No 22
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=26.92 E-value=79 Score=21.18 Aligned_cols=36 Identities=14% Similarity=0.107 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHH--HHHHHHHhhhhhhHHHHHHHHHHH
Q 036335 64 RGQRVAKTIRAV--VESMFELHFGRGIMDLLFTRYAQI 99 (122)
Q Consensus 64 ~~~~~a~~~RAv--~Epll~~HFG~~i~deLF~r~~~~ 99 (122)
....++++++.- +-+=-...|++++..-|++||..+
T Consensus 9 av~Fl~~~l~~~~~l~~~~v~~F~~~L~~~L~~~y~~H 46 (120)
T 3e9v_A 9 AVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHH 46 (120)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 455667777766 555567789999999999988644
No 23
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=26.89 E-value=71 Score=23.03 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=23.8
Q ss_pred CccCCCHHHHHHHHHhcCceeEeeeeeee
Q 036335 16 PYYGPCPEELKMEIQKEGSFIIDRLDHFE 44 (122)
Q Consensus 16 P~Y~ps~eEv~~~Ie~eGsF~I~~le~~~ 44 (122)
|.+..+.+++++++++.| |++..++.+.
T Consensus 230 ~~~~~~~~~l~~~l~~aG-f~~~~~~~~~ 257 (289)
T 2g72_A 230 TVVPVSEEEVREALVRSG-YKVRDLRTYI 257 (289)
T ss_dssp ECCCCCHHHHHHHHHHTT-EEEEEEEEEE
T ss_pred eeccCCHHHHHHHHHHcC-CeEEEeeEee
Confidence 466779999999999988 8988888775
No 24
>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain, feline sarcoma oncogene, structural genomics; NMR {Homo sapiens} PDB: 2dcr_A
Probab=26.04 E-value=23 Score=22.90 Aligned_cols=40 Identities=15% Similarity=0.208 Sum_probs=29.8
Q ss_pred CCCcccccCCccccCccCC--CHHHHHHHHHhcCceeEeeee
Q 036335 2 QGLIEEEKLDSFNAPYYGP--CPEELKMEIQKEGSFIIDRLD 41 (122)
Q Consensus 2 eGlI~eeklDsFNiP~Y~p--s~eEv~~~Ie~eGsF~I~~le 41 (122)
+|.|..-.-.--+.|.|+. +-+|.++++..+|+|-|-.-+
T Consensus 3 ~g~vp~~~~~l~~~~WyhG~isR~eAe~lL~~~G~FLVR~S~ 44 (114)
T 1wqu_A 3 SGSSGEVQKPLHEQLWYHGAIPRAEVAELLVHSGDFLVRESQ 44 (114)
T ss_dssp CCCCCGGGSCGGGCTTEEESCCHHHHHTTCCSTTEEEEEECS
T ss_pred ccccCCcccccccCCcEeeCCCHHHHHHHhccCCeEEEEEcC
Confidence 5666655555556788875 778888888899999997654
No 25
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=26.04 E-value=64 Score=21.64 Aligned_cols=30 Identities=20% Similarity=0.132 Sum_probs=24.7
Q ss_pred cCccCCCHHHHHHHHHhcCceeEeeeeeeec
Q 036335 15 APYYGPCPEELKMEIQKEGSFIIDRLDHFEI 45 (122)
Q Consensus 15 iP~Y~ps~eEv~~~Ie~eGsF~I~~le~~~~ 45 (122)
.+.+..+.+++++++++.| |++.+++.+..
T Consensus 155 ~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~ 184 (203)
T 3h2b_A 155 ATAYRWPLPELAQALETAG-FQVTSSHWDPR 184 (203)
T ss_dssp SCEEECCHHHHHHHHHHTT-EEEEEEEECTT
T ss_pred hhhccCCHHHHHHHHHHCC-CcEEEEEecCC
Confidence 3556779999999999988 99998887653
No 26
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.55 E-value=85 Score=19.24 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=21.7
Q ss_pred cccCccCCCHHHHHHHHHhcCceeEeeeeee
Q 036335 13 FNAPYYGPCPEELKMEIQKEGSFIIDRLDHF 43 (122)
Q Consensus 13 FNiP~Y~ps~eEv~~~Ie~eGsF~I~~le~~ 43 (122)
-||| +.-+.++|+++..+-|. |..+.+.
T Consensus 21 ~nLp-~~~t~~~l~~~F~~~G~--i~~~~i~ 48 (108)
T 1x4c_A 21 SGLP-PSGSWQDLKDHMREAGD--VCYADVY 48 (108)
T ss_dssp ESCC-SSCCHHHHHHHHGGGSC--EEEEEEE
T ss_pred eCCC-CCCCHHHHHHHHHhcCC--EeEEEEe
Confidence 4788 67799999999999884 6555543
No 27
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=24.84 E-value=39 Score=16.64 Aligned_cols=13 Identities=23% Similarity=0.309 Sum_probs=10.6
Q ss_pred CHHHHHHHHHhcC
Q 036335 21 CPEELKMEIQKEG 33 (122)
Q Consensus 21 s~eEv~~~Ie~eG 33 (122)
+..||++.++++|
T Consensus 12 ~~~~Vk~fvR~~g 24 (25)
T 3ewt_E 12 TLSQVKGFVRKNG 24 (26)
T ss_pred hHHHHHHHHHHcC
Confidence 4578899999888
No 28
>4efd_A Aminopeptidase; structural genomics, structural genomics consortium, SGC, hydrolase; 2.45A {Trypanosoma brucei brucei}
Probab=24.70 E-value=69 Score=26.87 Aligned_cols=61 Identities=18% Similarity=0.267 Sum_probs=39.7
Q ss_pred CCccccCccCCCHHHHHHHHHhcCcee-------------EeeeeeeeccCCCCcccccccCCcchhhHHHHHHHHHHHH
Q 036335 10 LDSFNAPYYGPCPEELKMEIQKEGSFI-------------IDRLDHFEIDWDGGVEELTSTMSLPLARGQRVAKTIRAVV 76 (122)
Q Consensus 10 lDsFNiP~Y~ps~eEv~~~Ie~eGsF~-------------I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~RAv~ 76 (122)
|.+ +|+|+|-.+|--+.+..-.+|. ..++-+..++-... -.+.+.++..+++.+|+..
T Consensus 62 ~~~--~p~~~~~v~~a~~~v~~~~~~~~l~~~~~~~g~~~~~~v~v~~lP~~~S-------RhN~p~r~~~i~~~v~~~~ 132 (522)
T 4efd_A 62 VQR--LPFYNPAVAEAIERVKEGGTYGVLVEGLANAAGSKFVRVVVGEVPTKAS-------RNNCPARPDVVTALVTAAL 132 (522)
T ss_dssp HHT--STTCCHHHHHHHHHCCBTCEEEEEEETCCBTTCCSEEEEEEEEECCCCC-------TTSCTTCHHHHHHHHHHHG
T ss_pred hhc--CCCCCHHHHHHHHHhhcCCccceeeeehhccCCCCceEEEEEecCCccc-------cCCCCCChHHHHHHHHhhc
Confidence 555 9999999988888888767772 22333333331110 1234578999999999988
Q ss_pred HHH
Q 036335 77 ESM 79 (122)
Q Consensus 77 Epl 79 (122)
.+.
T Consensus 133 ~~~ 135 (522)
T 4efd_A 133 DEV 135 (522)
T ss_dssp GGC
T ss_pred ccc
Confidence 654
No 29
>1x9t_B N-terminl peptide of fiber protein; jellyroll domain, insertion domain, anti-parallel beta sheets, virus like particle/peptide complex; HET: C15; 3.50A {Human adenovirus 2}
Probab=24.49 E-value=21 Score=17.86 Aligned_cols=7 Identities=71% Similarity=1.488 Sum_probs=3.8
Q ss_pred CccccCcc
Q 036335 11 DSFNAPYY 18 (122)
Q Consensus 11 DsFNiP~Y 18 (122)
|+|| |+|
T Consensus 9 ddFn-PVY 15 (26)
T 1x9t_B 9 DTFN-PVY 15 (26)
T ss_pred ccCc-ccc
Confidence 5666 444
No 30
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=23.87 E-value=76 Score=21.47 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=26.2
Q ss_pred ccccCccCCCHHHHHHHHHhcCceeEeeeeeee
Q 036335 12 SFNAPYYGPCPEELKMEIQKEGSFIIDRLDHFE 44 (122)
Q Consensus 12 sFNiP~Y~ps~eEv~~~Ie~eGsF~I~~le~~~ 44 (122)
.+.-.....+.+++++++++.|.|++..++...
T Consensus 151 ~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~ 183 (211)
T 3e23_A 151 KLARYYNYPSEEWLRARYAEAGTWASVAVESSE 183 (211)
T ss_dssp TTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEE
T ss_pred ccchhccCCCHHHHHHHHHhCCCcEEEEEEecc
Confidence 344445667999999999999989998888654
No 31
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=23.77 E-value=72 Score=22.85 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=23.8
Q ss_pred CccCCCHHHHHHHHHhcCceeEeeeeeeecc
Q 036335 16 PYYGPCPEELKMEIQKEGSFIIDRLDHFEID 46 (122)
Q Consensus 16 P~Y~ps~eEv~~~Ie~eGsF~I~~le~~~~~ 46 (122)
|.+..+++++++++++.| |+|.+.+.+...
T Consensus 206 ~~~~~~~~~l~~~l~~aG-f~v~~~~~~~~~ 235 (285)
T 4htf_A 206 PDYPRDPTQVYLWLEEAG-WQIMGKTGVRVF 235 (285)
T ss_dssp CSCCBCHHHHHHHHHHTT-CEEEEEEEESSS
T ss_pred CCCCCCHHHHHHHHHHCC-CceeeeeeEEEe
Confidence 456679999999999987 888888776533
No 32
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=23.70 E-value=93 Score=21.46 Aligned_cols=31 Identities=13% Similarity=0.103 Sum_probs=25.0
Q ss_pred ccCccCCCHHHHHHHHHhcCceeEeeeeeeec
Q 036335 14 NAPYYGPCPEELKMEIQKEGSFIIDRLDHFEI 45 (122)
Q Consensus 14 NiP~Y~ps~eEv~~~Ie~eGsF~I~~le~~~~ 45 (122)
.-|.|..+.+++++++++.| |++..++....
T Consensus 179 ~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~ 209 (235)
T 3lcc_A 179 GGPPYKVDVSTFEEVLVPIG-FKAVSVEENPH 209 (235)
T ss_dssp SCSSCCCCHHHHHHHHGGGT-EEEEEEEECTT
T ss_pred CCCCccCCHHHHHHHHHHcC-CeEEEEEecCC
Confidence 34667789999999999888 88888886643
No 33
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=23.63 E-value=86 Score=22.73 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=22.4
Q ss_pred CccCCCHHHHHHHHHhcCceeEeeeeeee
Q 036335 16 PYYGPCPEELKMEIQKEGSFIIDRLDHFE 44 (122)
Q Consensus 16 P~Y~ps~eEv~~~Ie~eGsF~I~~le~~~ 44 (122)
|.|..+++|+++++.. + |+|..++...
T Consensus 202 ~~~~~~~~el~~~l~~-~-f~v~~~~~~~ 228 (252)
T 2gb4_A 202 PPFYVPSAELKRLFGT-K-CSMQCLEEVD 228 (252)
T ss_dssp SSCCCCHHHHHHHHTT-T-EEEEEEEEEE
T ss_pred CCCCCCHHHHHHHhhC-C-eEEEEEeccc
Confidence 5566799999999987 5 9999998664
No 34
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=23.24 E-value=85 Score=22.45 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=22.9
Q ss_pred CccCCCHHHHHHHHHhcCceeEeeeeeee
Q 036335 16 PYYGPCPEELKMEIQKEGSFIIDRLDHFE 44 (122)
Q Consensus 16 P~Y~ps~eEv~~~Ie~eGsF~I~~le~~~ 44 (122)
+.|.-+.+|+++.+++.| |+|.+++...
T Consensus 212 ~~~~~~~~~l~~~l~~aG-F~i~~~~~~~ 239 (263)
T 2a14_A 212 SCVALEKGEVEQAVLDAG-FDIEQLLHSP 239 (263)
T ss_dssp ECCCCCHHHHHHHHHHTT-EEEEEEEEEC
T ss_pred eccccCHHHHHHHHHHCC-CEEEEEeecc
Confidence 445569999999999999 9998888664
No 35
>3m5g_A Hemagglutinin; influenza virus, envelope protein, fusion Pro HOST cell membrane, HOST membrane, membrane, transmembrane, viral protein; HET: NAG; 2.60A {Influenza a virus} SCOP: b.19.1.2 PDB: 3m5h_A* 3m5i_A* 3m5j_A* 4dj6_A* 4dj7_A* 4dj8_A* 4fqv_A 1ti8_A*
Probab=23.11 E-value=63 Score=25.38 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=25.0
Q ss_pred cccccCCccccCccCCCHHHHHHHHHhcCceeE
Q 036335 5 IEEEKLDSFNAPYYGPCPEELKMEIQKEGSFII 37 (122)
Q Consensus 5 I~eeklDsFNiP~Y~ps~eEv~~~Ie~eGsF~I 37 (122)
|++..-++--.|-..+.-||||+++..-|+|+|
T Consensus 82 VEr~~ang~CYPG~~~d~eeLR~l~ss~~~~e~ 114 (317)
T 3m5g_A 82 IERREGTDICYPGRFTNEESLRQILRRSGGIGK 114 (317)
T ss_dssp EECTTCBSCSSSCCBTTHHHHHHHHHTSCEEEE
T ss_pred EEccCCCCCcCCCccCCHHHHHHHHhcCCceEe
Confidence 343333444568888999999999999999864
No 36
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=23.06 E-value=67 Score=20.73 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHhhhh
Q 036335 64 RGQRVAKTIRAVVESMFELHFG--RGIMDLLFTRYAQIVDGYL 104 (122)
Q Consensus 64 ~~~~~a~~~RAv~Epll~~HFG--~~i~deLF~r~~~~v~~~~ 104 (122)
+-..+|+..- |..+.|=.||+ ++++..+++++...+.+.+
T Consensus 32 t~~~IA~~ag-vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~ 73 (191)
T 3on4_A 32 SFKDIATAIN-IKTASIHYHFPSKEDLGVAVISWHTDKIAAVL 73 (191)
T ss_dssp CHHHHHHHHT-CCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC-CCcchhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445555443 56788899999 5777777777766665544
No 37
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}
Probab=22.64 E-value=2e+02 Score=20.08 Aligned_cols=25 Identities=8% Similarity=-0.043 Sum_probs=21.6
Q ss_pred cCCCHHHHHHHHHhcCceeEeeeeee
Q 036335 18 YGPCPEELKMEIQKEGSFIIDRLDHF 43 (122)
Q Consensus 18 Y~ps~eEv~~~Ie~eGsF~I~~le~~ 43 (122)
..+|.+++++++++.| |++.+.+.+
T Consensus 195 ~~~s~~~l~~~l~~aG-f~~~~~~~~ 219 (275)
T 3bkx_A 195 TLITPDTLAQIAHDNT-WTYTAGTIV 219 (275)
T ss_dssp CCCCHHHHHHHHHHHT-CEEEECCCB
T ss_pred ccCCHHHHHHHHHHCC-CeeEEEEEe
Confidence 5689999999999988 888877766
No 38
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=22.44 E-value=70 Score=20.62 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=17.3
Q ss_pred HHHHHHHHhhh--hhhHHHHHHHHHHHHhh
Q 036335 75 VVESMFELHFG--RGIMDLLFTRYAQIVDG 102 (122)
Q Consensus 75 v~Epll~~HFG--~~i~deLF~r~~~~v~~ 102 (122)
|..+.|=.||+ ++++.+++.++...+.+
T Consensus 40 vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~ 69 (194)
T 2g7s_A 40 IRNASIHHHFPSKSDLVCKLVSQYRQEAEA 69 (194)
T ss_dssp CCHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 45667777887 45666666665554443
No 39
>3hpw_C Protein CCDA; alpha+beta, SH3 domain, intrinsically disordered, toxin/toxin repressor complex; 1.45A {Escherichia coli} PDB: 3g7z_C 3tcj_T
Probab=22.34 E-value=39 Score=17.95 Aligned_cols=15 Identities=33% Similarity=0.383 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCcee
Q 036335 22 PEELKMEIQKEGSFI 36 (122)
Q Consensus 22 ~eEv~~~Ie~eGsF~ 36 (122)
.++.-..|+++|+|.
T Consensus 16 i~~~N~~ve~~Gl~~ 30 (36)
T 3hpw_C 16 MAEVARFIEMNGSFA 30 (36)
T ss_dssp HHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHcCCCH
Confidence 456778899999883
No 40
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=22.29 E-value=62 Score=23.03 Aligned_cols=28 Identities=11% Similarity=-0.036 Sum_probs=22.3
Q ss_pred CccCCCHHHHHHHHHhcCceeEeeeeeee
Q 036335 16 PYYGPCPEELKMEIQKEGSFIIDRLDHFE 44 (122)
Q Consensus 16 P~Y~ps~eEv~~~Ie~eGsF~I~~le~~~ 44 (122)
|.+..+++++++++++.| |++.+.+.+.
T Consensus 224 ~~~~~~~~~l~~ll~~aG-f~~v~~~~~~ 251 (298)
T 1ri5_A 224 IEYFVDFTRMVDGFKRLG-LSLVERKGFI 251 (298)
T ss_dssp EEECCCHHHHHHHHHTTT-EEEEEEEEHH
T ss_pred cccccCHHHHHHHHHHcC-CEEEEecCHH
Confidence 346678999999999988 8887776653
No 41
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=22.18 E-value=76 Score=20.56 Aligned_cols=38 Identities=8% Similarity=0.030 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHhhh
Q 036335 65 GQRVAKTIRAVVESMFELHFG--RGIMDLLFTRYAQIVDGY 103 (122)
Q Consensus 65 ~~~~a~~~RAv~Epll~~HFG--~~i~deLF~r~~~~v~~~ 103 (122)
-+.+|+..- +..+.|=.||+ ++++.+++.++...+.+.
T Consensus 25 i~~Ia~~ag-vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 64 (194)
T 3bqz_B 25 TGEIVKLSE-SSKGNLYYHFKTKENLFLEILNIEESKWQEQ 64 (194)
T ss_dssp HHHHHHHTT-CCHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCchhHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 334444332 45677888888 566666666666555443
No 42
>1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase, antibioti; 1.75A {Streptomyces clavuligerus} SCOP: c.42.1.1 PDB: 1gq7_A
Probab=21.94 E-value=2.5e+02 Score=21.00 Aligned_cols=54 Identities=13% Similarity=0.076 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHhcCceeEeeeeeeecc--CCCCcccccccCCcchhhHHHHHHHHHHHHHHHHHHh
Q 036335 19 GPCPEELKMEIQKEGSFIIDRLDHFEID--WDGGVEELTSTMSLPLARGQRVAKTIRAVVESMFELH 83 (122)
Q Consensus 19 ~ps~eEv~~~Ie~eGsF~I~~le~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~RAv~Epll~~H 83 (122)
+.+..|+..+++.=....|--+.+.|.+ +|+ . ...+...|+.++.++..+...+
T Consensus 254 Glt~~e~~~~l~~l~~~~vvg~DivE~~P~~D~-~----------~~Ta~~aa~li~~~l~~~~~~~ 309 (313)
T 1gq6_A 254 GLLSREVLALLRCVGDLKPVGFDVMEVSPLYDH-G----------GITSILATEIGAELLYQYARAH 309 (313)
T ss_dssp CBCHHHHHHHGGGGGGSEEEEEEEECBCGGGCS-T----------THHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHccCCeEEEEEEEECCCcCC-C----------ChHHHHHHHHHHHHHHHHHHHh
Confidence 3488999999985433578788877754 332 1 1467778888887777665444
No 43
>3o59_X DNA polymerase II large subunit; alpha helical structure, transferase; HET: DNA; 2.20A {Pyrococcus horikoshii}
Probab=21.73 E-value=47 Score=25.81 Aligned_cols=17 Identities=29% Similarity=0.673 Sum_probs=14.4
Q ss_pred CccCCCHHHHHHHHHhc
Q 036335 16 PYYGPCPEELKMEIQKE 32 (122)
Q Consensus 16 P~Y~ps~eEv~~~Ie~e 32 (122)
=.|.||++|++-+++..
T Consensus 201 lQY~P~~~Eir~iv~n~ 217 (300)
T 3o59_X 201 LQYHPSPEEVRLAMRNI 217 (300)
T ss_dssp CSSCCCHHHHHHHHHHC
T ss_pred cccCCCHHHHHHHHHcC
Confidence 37999999999998753
No 44
>3eyk_A Hemagglutinin HA1 chain; inhibitor, envelope protein, fusion protein, glycoprotein, lipoprotein, membrane, palmitate, transmembrane, virion; HET: EYK; 2.50A {Influenza a virus} SCOP: b.19.1.2 PDB: 3eyj_A*
Probab=21.40 E-value=53 Score=25.88 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=26.1
Q ss_pred cccccCCccccCccCCCHHHHHHHHHhcCceeE
Q 036335 5 IEEEKLDSFNAPYYGPCPEELKMEIQKEGSFII 37 (122)
Q Consensus 5 I~eeklDsFNiP~Y~ps~eEv~~~Ie~eGsF~I 37 (122)
||...-.+--.|-..+.-||||+++..-|+|+|
T Consensus 80 VEr~~a~g~CYPG~~~d~eeLR~l~ss~~s~e~ 112 (323)
T 3eyk_A 80 IERPTAVDTCYPFDVPDYQSLRSILASSGSLEF 112 (323)
T ss_dssp EECTTCCCCSSCEECTTHHHHHHHHHHHTBCCE
T ss_pred EECCCCCCccCCCccCCHHHHHHHHhcCCceee
Confidence 444444455678888999999999999999875
No 45
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=21.20 E-value=77 Score=20.41 Aligned_cols=37 Identities=11% Similarity=0.115 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHhhh
Q 036335 66 QRVAKTIRAVVESMFELHFG--RGIMDLLFTRYAQIVDGY 103 (122)
Q Consensus 66 ~~~a~~~RAv~Epll~~HFG--~~i~deLF~r~~~~v~~~ 103 (122)
..+|+..- |..+.|=.||+ ++++..++.++...+.+.
T Consensus 32 ~~Ia~~ag-vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 70 (195)
T 3pas_A 32 GKIAKAAG-LSPATLYIYYEDKEQLLLATFYYVSDQVIDA 70 (195)
T ss_dssp HHHHHHHT-SCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCchHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 34444432 46677888998 566666666665555443
No 46
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=21.05 E-value=76 Score=20.96 Aligned_cols=39 Identities=8% Similarity=0.045 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHhhhh
Q 036335 65 GQRVAKTIRAVVESMFELHFG--RGIMDLLFTRYAQIVDGYL 104 (122)
Q Consensus 65 ~~~~a~~~RAv~Epll~~HFG--~~i~deLF~r~~~~v~~~~ 104 (122)
-..+|+..- |..+.|=.||+ ++++.+++.++...+.+.+
T Consensus 54 v~~Ia~~ag-vs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~ 94 (218)
T 3dcf_A 54 LDDIADRIG-FTKPAIYYYFKSKEDVLFAIVNSIVDEALERF 94 (218)
T ss_dssp HHHHHHHHT-CCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 334444442 56678889998 5677777777666555443
No 47
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=21.04 E-value=76 Score=20.65 Aligned_cols=39 Identities=13% Similarity=0.196 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHhhhh
Q 036335 65 GQRVAKTIRAVVESMFELHFG--RGIMDLLFTRYAQIVDGYL 104 (122)
Q Consensus 65 ~~~~a~~~RAv~Epll~~HFG--~~i~deLF~r~~~~v~~~~ 104 (122)
-..+|+..- |..+.|=.||| ++++..++.++...+.+.+
T Consensus 40 ~~~Ia~~ag-vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~ 80 (206)
T 3kz9_A 40 HADIAEIAQ-VSVATVFNYFPTREDLVDEVLNHVVRQFSNFL 80 (206)
T ss_dssp HHHHHHHHT-SCHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 334444332 45677888998 5677777777666555443
No 48
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=20.91 E-value=81 Score=21.27 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHhhh
Q 036335 65 GQRVAKTIRAVVESMFELHFG--RGIMDLLFTRYAQIVDGY 103 (122)
Q Consensus 65 ~~~~a~~~RAv~Epll~~HFG--~~i~deLF~r~~~~v~~~ 103 (122)
-..+|...- +..+.|=.||| ++++.++++++...+.+.
T Consensus 32 ~~~IA~~aG-vs~gtlY~yF~sKe~L~~a~~~~~~~~~~~~ 71 (209)
T 2gfn_A 32 TRAVAEESG-WSTGVLNHYFGSRHELLLAALRRAGDIQGDR 71 (209)
T ss_dssp HHHHHHHHS-SCHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCcchHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 334444332 57788999999 577777777776655443
No 49
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=20.78 E-value=79 Score=20.52 Aligned_cols=40 Identities=10% Similarity=0.081 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHhhhh
Q 036335 64 RGQRVAKTIRAVVESMFELHFG--RGIMDLLFTRYAQIVDGYL 104 (122)
Q Consensus 64 ~~~~~a~~~RAv~Epll~~HFG--~~i~deLF~r~~~~v~~~~ 104 (122)
+-..+|...- |..+.|=.||+ ++++.+++.++...+.+.+
T Consensus 34 t~~~Ia~~ag-vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~ 75 (190)
T 2v57_A 34 ALGDIAAAAG-VGRSTVHRYYPERTDLLRALARHVHDLSNAAI 75 (190)
T ss_dssp CHHHHHHHHT-CCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC-CCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443 56788889999 5777777777766665543
No 50
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=20.76 E-value=94 Score=21.05 Aligned_cols=29 Identities=21% Similarity=0.132 Sum_probs=23.3
Q ss_pred ccCCCHHHHHHHHHhcCceeEeeeeeeecc
Q 036335 17 YYGPCPEELKMEIQKEGSFIIDRLDHFEID 46 (122)
Q Consensus 17 ~Y~ps~eEv~~~Ie~eGsF~I~~le~~~~~ 46 (122)
.+..+.+|+++++++.| |++..++.....
T Consensus 182 ~~~~~~~~l~~ll~~aG-f~~~~~~~~~~~ 210 (235)
T 3sm3_A 182 AHHFTEKELVFLLTDCR-FEIDYFRVKELE 210 (235)
T ss_dssp EECBCHHHHHHHHHTTT-EEEEEEEEEEEE
T ss_pred eEeCCHHHHHHHHHHcC-CEEEEEEeccee
Confidence 45779999999999887 888888866533
No 51
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=20.42 E-value=80 Score=20.79 Aligned_cols=40 Identities=23% Similarity=0.104 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHhhhh
Q 036335 64 RGQRVAKTIRAVVESMFELHFG--RGIMDLLFTRYAQIVDGYL 104 (122)
Q Consensus 64 ~~~~~a~~~RAv~Epll~~HFG--~~i~deLF~r~~~~v~~~~ 104 (122)
+-..+|... .|..+.|=.||+ ++++..++.++...+.+.+
T Consensus 36 ti~~IA~~a-gvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~ 77 (212)
T 3knw_A 36 GLQEILKTS-GVPKGSFYHYFESKEAFGCELLKHYISDYQIRL 77 (212)
T ss_dssp CHHHHHHHH-TCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHh-CCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344555544 256788889999 5777777777766655543
No 52
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=20.33 E-value=90 Score=20.45 Aligned_cols=30 Identities=17% Similarity=0.261 Sum_probs=22.0
Q ss_pred HHHHHHHHhhh--hhhHHHHHHHHHHHHhhhh
Q 036335 75 VVESMFELHFG--RGIMDLLFTRYAQIVDGYL 104 (122)
Q Consensus 75 v~Epll~~HFG--~~i~deLF~r~~~~v~~~~ 104 (122)
|..+.|=.||+ ++++.++++++...+.+.+
T Consensus 40 vs~~t~Y~~F~sK~~L~~a~~~~~~~~~~~~~ 71 (195)
T 3frq_A 40 LSRAALIQRFTNRDTLLVRMMERGVEQVRHYL 71 (195)
T ss_dssp CCHHHHHHHHCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 56688899999 5777777777766665544
No 53
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21
Probab=20.05 E-value=2.2e+02 Score=19.56 Aligned_cols=24 Identities=8% Similarity=-0.129 Sum_probs=18.7
Q ss_pred cCCCHHHHHHHHHhcCceeEeeeee
Q 036335 18 YGPCPEELKMEIQKEGSFIIDRLDH 42 (122)
Q Consensus 18 Y~ps~eEv~~~Ie~eGsF~I~~le~ 42 (122)
+.++.+++.+++++.| |++..+..
T Consensus 163 ~~~~~~~~~~~l~~aG-f~~~~~~~ 186 (256)
T 1nkv_A 163 DFLTLPGLVGAFDDLG-YDVVEMVL 186 (256)
T ss_dssp GSCCHHHHHHHHHTTT-BCCCEEEE
T ss_pred ccCCHHHHHHHHHHCC-CeeEEEEe
Confidence 5679999999999998 66655443
No 54
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=20.03 E-value=84 Score=19.66 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=21.4
Q ss_pred ccccCccCCCHHHHHHHHHhcCceeEeeeee
Q 036335 12 SFNAPYYGPCPEELKMEIQKEGSFIIDRLDH 42 (122)
Q Consensus 12 sFNiP~Y~ps~eEv~~~Ie~eGsF~I~~le~ 42 (122)
--||| |.-+.++|+++..+-|. |..+.+
T Consensus 21 V~nLp-~~~t~~~l~~~F~~~G~--v~~~~i 48 (115)
T 3beg_B 21 VSGLP-PSGSWQDLKDHMREAGD--VCYADV 48 (115)
T ss_dssp EEECC-SSCCTTHHHHHHGGGSC--EEEEEE
T ss_pred EeCCC-CCCCHHHHHHHHHhcCC--eEEEEE
Confidence 34888 66799999999999884 555554
No 55
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=20.00 E-value=82 Score=20.98 Aligned_cols=37 Identities=16% Similarity=0.140 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHhhh--hhhHHHHHHHHHHHHhhh
Q 036335 66 QRVAKTIRAVVESMFELHFG--RGIMDLLFTRYAQIVDGY 103 (122)
Q Consensus 66 ~~~a~~~RAv~Epll~~HFG--~~i~deLF~r~~~~v~~~ 103 (122)
..+|+.. .+..+.|=.||+ ++++..++.++...+.+.
T Consensus 54 ~~IA~~a-Gvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 92 (222)
T 3bru_A 54 DEILKAA-RVPKGSFYHYFRNKADFGLALIEAYDTYFARL 92 (222)
T ss_dssp HHHHHHH-TCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-CCCcchhhhhCCCHHHHHHHHHHHHHHHHHHH
Confidence 3444433 245677888998 567777777666655443
Done!