BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 036337
(197 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O82245|TSPO_ARATH Translocator protein homolog OS=Arabidopsis thaliana GN=TSPO PE=1
SV=1
Length = 196
Score = 171 bits (433), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/198 (45%), Positives = 128/198 (64%), Gaps = 3/198 (1%)
Query: 1 MATENLKKRTRDDRNDSDDTANVDKDNEVIKGGKRNNHQRKMVMAKRGLKSLSMAVALPL 60
M +++++ R DDR D+ TA + + + K Q++ MAKRGLKSL++AVA P+
Sbjct: 1 MDSQDIRYRGGDDR-DAATTAMAETERKSADDNKGKRDQKR-AMAKRGLKSLTVAVAAPV 58
Query: 61 SLTLLNIYFNGSSDRYVKQEKPF-WFPSLLVLHTASLASTFLMGLSSWLVWAEGGFHKKP 119
+TL YF G+SD Y + K W P L +LHT LAS+ LMGL++WLVW +GGFHKKP
Sbjct: 59 LVTLFATYFLGTSDGYGNRAKSSSWIPPLWLLHTTCLASSGLMGLAAWLVWVDGGFHKKP 118
Query: 120 TVLYLCLAQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKP 179
LYL LAQ L L WDP+ F +G+ AGL V S +L + E++P+AG+L+KP
Sbjct: 119 NALYLYLAQFLLCLVWDPVTFRVGSGVAGLAVWLGQSAALFGCYKAFNEISPVAGNLVKP 178
Query: 180 CVAWAALLSLVNLKLVFS 197
C+AWAA ++ VN+KL +
Sbjct: 179 CLAWAAFVAAVNVKLAVA 196
>sp|P30536|TSPOA_HUMAN Translocator protein OS=Homo sapiens GN=TSPO PE=1 SV=3
Length = 169
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 74/158 (46%), Gaps = 17/158 (10%)
Query: 44 MAKRGLKSLSMAVALPLSLTLLNIYFNGSSDR-YVKQEKPFWFPSLLVLHTASLASTFLM 102
MA + ++ +A L + + + +G R Y +KP W P VL M
Sbjct: 1 MAPPWVPAMGFTLAPSLGCFVGSRFVHGEGLRWYAGLQKPSWHPPHWVLGPVWGTLYSAM 60
Query: 103 GLSSWLVWAE-GGFHKKPTV-LYLCLAQLGLSLAWDPIVFHLGAYWAG-------LVVST 153
G S+LVW E GGF +K V L L QL L+ AW PI F GA G LV
Sbjct: 61 GYGSYLVWKELGGFTEKAVVPLGLYTGQLALNWAWPPIFF--GARQMGWALVDLLLVSGA 118
Query: 154 ALSGSLVWYCRVVEEVNPIAGDLMKPCVAWAALLSLVN 191
A + ++ WY +V+P+A L+ P +AW A + +N
Sbjct: 119 AAATTVAWY-----QVSPLAARLLYPYLAWLAFTTTLN 151
>sp|P16257|TSPO_RAT Translocator protein OS=Rattus norvegicus GN=Tspo PE=1 SV=1
Length = 169
Score = 47.8 bits (112), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 64/139 (46%), Gaps = 18/139 (12%)
Query: 64 LLNIYF-NGSSDR-YVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAE-GGFHKKPT 120
+ YF G R Y +KP W P L MG S+++W E GGF ++
Sbjct: 20 FMGAYFVRGEGLRWYASLQKPSWHPPRWTLAPIWGTLYSAMGYGSYIIWKELGGFTEEAM 79
Query: 121 V-LYLCLAQLGLSLAWDPIVF---HLGAYWA----GLVVSTALSGSLVWYCRVVEEVNPI 172
V L L QL L+ AW PI F +G WA LV A + +L W+ V+P
Sbjct: 80 VPLGLYTGQLALNWAWPPIFFGARQMG--WALVDLMLVSGVATATTLAWH-----RVSPP 132
Query: 173 AGDLMKPCVAWAALLSLVN 191
A L+ P +AW A +++N
Sbjct: 133 AARLLYPYLAWLAFATMLN 151
>sp|Q9GMC9|TSPO_SHEEP Translocator protein OS=Ovis aries GN=TSPO PE=1 SV=1
Length = 169
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 68 YFNGSSDR-YVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAE-GGFHKKPTV-LYL 124
Y G R Y +KP W P +L MG S+L+W E GGF K+ V L L
Sbjct: 25 YIRGEGFRWYASLQKPPWHPPRWILAPIWGTLYSAMGYGSYLIWKELGGFSKEAVVPLGL 84
Query: 125 CLAQLGLSLAWDPIVF---HLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKPCV 181
QL L+ AW P+ F +G + L+++ ++ + R +V+P A L+ P +
Sbjct: 85 YAGQLALNWAWPPLFFGARQMGWAFVDLLLTGGMAAATAMAWR---QVSPPAACLLYPYL 141
Query: 182 AWAALLSLVNLKL 194
AW A +++N ++
Sbjct: 142 AWLAFAAMLNYRM 154
>sp|P50637|TSPO_MOUSE Translocator protein OS=Mus musculus GN=Tspo PE=2 SV=1
Length = 169
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 62/139 (44%), Gaps = 18/139 (12%)
Query: 64 LLNIYF-NGSSDR-YVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAE-GGFHKKPT 120
+ YF G R Y +KP W P L MG S++VW E GGF +
Sbjct: 20 FMGAYFVRGEGLRWYASLQKPSWHPPRWTLAPIWGTLYSAMGYGSYIVWKELGGFTEDAM 79
Query: 121 V-LYLCLAQLGLSLAWDPIVFHLGAYWAG-------LVVSTALSGSLVWYCRVVEEVNPI 172
V L L QL L+ AW PI F GA G LV A + +L W+ V+P
Sbjct: 80 VPLGLYTGQLALNWAWPPIFF--GARQMGWALADLLLVSGVATATTLAWH-----RVSPP 132
Query: 173 AGDLMKPCVAWAALLSLVN 191
A L+ P +AW A +++N
Sbjct: 133 AARLLYPYLAWLAFATVLN 151
>sp|P30535|TSPO_BOVIN Translocator protein OS=Bos taurus GN=TSPO PE=2 SV=1
Length = 169
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 56/130 (43%), Gaps = 3/130 (2%)
Query: 68 YFNGSSDR-YVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAE-GGFHKKPTV-LYL 124
Y G R Y +KP W P +L MG S+++W E GGF K+ V L L
Sbjct: 25 YTRGEGFRWYASLQKPPWHPPRWILAPIWGTLYSAMGYGSYMIWKELGGFSKEAVVPLGL 84
Query: 125 CLAQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKPCVAWA 184
QL L+ AW P+ F LV G +V+P A L+ P +AW
Sbjct: 85 YAGQLALNWAWPPLFFGTRQMGWALVDLLLTGGMAAATAMAWHQVSPPAACLLYPYLAWL 144
Query: 185 ALLSLVNLKL 194
A ++N ++
Sbjct: 145 AFAGMLNYRM 154
>sp|Q6UN27|TSPO_PIG Translocator protein OS=Sus scrofa GN=TSPO PE=2 SV=1
Length = 169
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 16/125 (12%)
Query: 76 YVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAE-GGFHKKPTV-LYLCLAQLGLSL 133
Y +KP W P L MG S+++W E GGF ++ V L L QL L+
Sbjct: 34 YAGLQKPSWHPPHWTLAPIWGTLYSAMGYGSYMIWKELGGFSEEAVVPLGLYAGQLALNW 93
Query: 134 AWDPIVFHLGAYWAG-------LVVSTALSGSLVWYCRVVEEVNPIAGDLMKPCVAWAAL 186
AW P+ F GA G L A + ++ WY +V+P+A L+ P +AW A
Sbjct: 94 AWPPLFF--GARQMGWALVDLVLTGGVAAATAVAWY-----QVSPLAARLLYPYLAWLAF 146
Query: 187 LSLVN 191
+ +N
Sbjct: 147 AATLN 151
>sp|Q9CRZ8|TSPO2_MOUSE Translocator protein 2 OS=Mus musculus GN=Tspo2 PE=2 SV=2
Length = 162
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 60 LSLTLLNIYFNGSSDRYVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAE-GGFHKK 118
L L+ + + S R + K W P V+ + +MG +S+LVW E GG +
Sbjct: 14 LGPILICMLIHQPSSRCEDERKLPWCPPHKVILLVWVTIYSVMGYASYLVWKELGGGFRW 73
Query: 119 PTVLYLCLAQLGLSLAWDPIVFHLGA 144
P L L L L+L+W +V L A
Sbjct: 74 PLALPLGLYSFQLALSWTFLVLFLAA 99
>sp|C6KTB7|ALTH1_PLAF7 Putative E3 ubiquitin-protein ligase protein PFF1365c OS=Plasmodium
falciparum (isolate 3D7) GN=PFF1365c PE=3 SV=1
Length = 10287
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 4 ENLKKRTRDDRNDSDDTANVDKDNEVIKGGKRNNHQRKMV 43
+N K+ D ND +D N D DN ++ GGK++ +K++
Sbjct: 8240 DNYDKKDNYDTNDKNDKNNCD-DNIILSGGKKDKRNKKVM 8278
>sp|Q62682|CNTN3_RAT Contactin-3 OS=Rattus norvegicus GN=Cntn3 PE=1 SV=1
Length = 1028
Score = 32.0 bits (71), Expect = 3.0, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 115 FHKKPTVLYLCLAQ--LGLSLAWDPIVFHLGAYWAGLV--VSTALSGSLVWYCRVVEEVN 170
F ++ T Y C+A+ G ++A + ++ YW L+ V TA+ SL W CR +
Sbjct: 287 FQQEDTGSYECIAENSRGKNVARGRLTYYAKPYWVQLLKDVETAVEDSLYWECRASGKPK 346
Query: 171 P 171
P
Sbjct: 347 P 347
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,602,626
Number of Sequences: 539616
Number of extensions: 2761610
Number of successful extensions: 7488
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 7463
Number of HSP's gapped (non-prelim): 27
length of query: 197
length of database: 191,569,459
effective HSP length: 111
effective length of query: 86
effective length of database: 131,672,083
effective search space: 11323799138
effective search space used: 11323799138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)