Query 036337
Match_columns 197
No_of_seqs 150 out of 834
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 11:39:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036337.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036337hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03073 TspO_MBR: TspO/MBR fa 100.0 1.8E-40 4E-45 264.8 14.6 143 54-196 2-147 (148)
2 COG3476 Tryptophan-rich sensor 100.0 2.2E-39 4.8E-44 261.4 16.9 147 50-196 6-155 (161)
3 PHA02980 hypothetical protein; 100.0 3.7E-39 8.1E-44 260.5 15.0 120 75-196 32-151 (160)
4 KOG3797 Peripheral-type benzod 100.0 1.1E-37 2.3E-42 247.6 0.1 147 50-196 11-160 (168)
5 COG4709 Predicted membrane pro 82.4 27 0.00059 29.5 10.8 33 134-166 146-178 (195)
6 PF02322 Cyto_ox_2: Cytochrome 75.7 60 0.0013 29.1 13.1 62 52-114 119-185 (328)
7 TIGR02230 ATPase_gene1 F0F1-AT 72.5 4.3 9.2E-05 30.8 3.0 38 54-106 50-87 (100)
8 PLN02953 phosphatidate cytidyl 72.2 87 0.0019 29.4 13.7 28 19-48 75-102 (403)
9 PF08248 Tryp_FSAP: Tryptophyl 70.3 2.5 5.4E-05 20.0 0.8 10 80-89 1-10 (12)
10 COG4603 ABC-type uncharacteriz 67.9 1E+02 0.0022 28.4 12.9 135 48-182 14-155 (356)
11 COG1294 AppB Cytochrome bd-typ 63.5 1.2E+02 0.0026 27.8 14.1 64 50-114 124-193 (346)
12 PF03733 DUF307: Domain of unk 58.4 51 0.0011 21.9 5.8 13 130-143 2-14 (53)
13 PF06024 DUF912: Nucleopolyhed 57.1 14 0.00031 27.6 3.3 46 39-85 55-101 (101)
14 TIGR00203 cydB cytochrome d ox 51.1 2.1E+02 0.0045 26.5 14.8 63 51-114 123-194 (378)
15 PRK15003 cytochrome d ubiquino 48.4 2.3E+02 0.005 26.3 13.9 63 51-114 123-194 (379)
16 PF04896 AmoC: Ammonia monooxy 47.7 29 0.00064 30.3 4.1 48 66-113 119-168 (251)
17 PF04235 DUF418: Protein of un 45.7 1.5E+02 0.0031 23.3 8.0 16 119-134 92-107 (163)
18 PF07423 DUF1510: Protein of u 44.8 29 0.00062 29.8 3.6 26 47-72 13-38 (217)
19 PF06072 Herpes_US9: Alphaherp 43.0 27 0.00059 24.1 2.6 14 55-68 42-55 (60)
20 PF12976 DUF3860: Domain of Un 39.8 11 0.00023 27.6 0.2 12 1-12 1-12 (92)
21 PF11947 DUF3464: Protein of u 36.3 31 0.00067 28.1 2.4 24 45-68 58-81 (153)
22 TIGR03078 CH4_NH3mon_ox_C meth 36.2 58 0.0013 28.0 4.1 48 66-113 107-156 (229)
23 PF15284 PAGK: Phage-encoded v 36.1 71 0.0015 22.1 3.8 21 75-95 33-56 (61)
24 PF10958 DUF2759: Protein of u 33.3 1.5E+02 0.0033 19.9 5.6 38 156-193 7-47 (52)
25 PRK15028 cytochrome bd-II oxid 31.8 4.2E+02 0.0091 24.5 14.8 61 53-114 125-194 (378)
26 PRK10927 essential cell divisi 31.4 45 0.00098 30.3 2.9 23 48-70 31-53 (319)
27 PF02487 CLN3: CLN3 protein; 30.5 4.5E+02 0.0098 24.5 13.2 50 48-100 241-291 (402)
28 PF07062 Clc-like: Clc-like; 28.5 2.1E+02 0.0046 24.4 6.3 54 136-192 97-150 (211)
29 PF09586 YfhO: Bacterial membr 27.7 6.2E+02 0.013 25.1 16.4 18 77-94 329-346 (843)
30 TIGR01165 cbiN cobalt transpor 26.4 91 0.002 23.3 3.3 13 76-88 51-63 (91)
31 PF14362 DUF4407: Domain of un 25.2 4.5E+02 0.0098 22.8 11.8 63 86-168 46-108 (301)
32 PF15012 DUF4519: Domain of un 24.4 44 0.00095 22.8 1.2 31 33-65 12-42 (56)
33 COG0798 ACR3 Arsenite efflux p 24.2 53 0.0012 30.1 2.0 38 49-86 178-218 (342)
34 TIGR00776 RhaT RhaT L-rhamnose 24.2 4.6E+02 0.0099 22.6 7.9 25 120-144 87-112 (290)
35 COG0534 NorM Na+-driven multid 23.2 6E+02 0.013 23.5 11.9 53 118-170 165-222 (455)
36 PF06796 NapE: Periplasmic nit 22.9 1.9E+02 0.0042 19.6 4.1 22 48-69 20-41 (56)
37 COG1863 MnhE Multisubunit Na+/ 22.7 4.2E+02 0.0091 21.5 7.9 64 127-190 7-73 (158)
38 COG3763 Uncharacterized protei 22.3 1.3E+02 0.0029 21.4 3.3 20 52-71 6-25 (71)
39 COG0670 Integral membrane prot 21.8 5.1E+02 0.011 22.2 17.1 46 123-168 91-140 (233)
40 PRK10913 dipeptide transporter 21.8 1.9E+02 0.004 25.4 5.0 12 27-38 7-18 (300)
41 KOG4740 Uncharacterized conser 21.2 6.6E+02 0.014 24.8 8.8 81 91-171 297-404 (564)
42 PF05297 Herpes_LMP1: Herpesvi 20.0 35 0.00076 30.9 0.0 12 80-91 13-24 (381)
No 1
>PF03073 TspO_MBR: TspO/MBR family; InterPro: IPR004307 Members of this group are involved in transmembrane signalling. In both prokaryotes and mitochondria they are localized to the outer membrane, and have been shown to bind and transport dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway [, ]. They are associated with the major outer membrane porins (in prokaryotes) and with the voltage-dependent anion channel (in mitochondria) []. Rhodobacter sphaeroides TspO (previously CrtK) is involved in signal transduction, functioning as a negative regulator of the expression of some photosynthesis genes (PpsR/AppA repressor/antirepressor regulon). This down-regulation is believed to be in response to oxygen levels. TspO works through (or modulates) the PpsR/AppA system and acts upstream of the site of action of these regulatory proteins []. It has been suggested that the TspO regulatory pathway works by regulating the efflux of certain tetrapyrrole intermediates of the haem/bacteriochlorophyll biosynthetic pathways in response to the availability of molecular oxygen, thereby causing the accumulation of a biosynthetic intermediate that serves as a corepressor for the regulated genes []. A homologue of the TspO protein in Rhizobium meliloti (Sinorhizobium meliloti) is involved in regulating expression of the ndi locus in response to stress conditions []. There is evidence that the S. meliloti TspO acts through, or in addition to, the FixL regulatory system. In animals, the peripheral-type benzodiazepine receptor (PBR, MBR) is a mitochondrial protein (located in the outer mitochondrial membrane) characterised by its ability to bind with nanomolar affinity to a variety of benzodiazepine-like drugs, as well as to dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway. Depending upon the tissue, it was shown to be involved in steroidogenesis, haem biosynthesis, apoptosis, cell growth and differentiation, mitochondrial respiratory control, and immune and stress response, but the precise function of the PBR remains unclear. The role of PBR in the regulation of cholesterol transport from the outer to the inner mitochondrial membrane, the rate-determining step in steroid biosynthesis, has been studied in detail. PBR is required for the binding, uptake and release, upon ligand activation, of the substrate cholesterol []. PBR forms a multimeric complex with the voltage-dependent anion channel (VDAC) [] and adenine nucleotide carrier []. Molecular modeling of PBR suggested that it might function as a channel for cholesterol. Indeed, cholesterol uptake and transport by bacterial cells was induced upon PBR expression. Mutagenesis studies identified a cholesterol recognition/interaction motif (CRAC) in the cytoplasmic C terminus of PBR [, ]. In complementation experiments, rat PBR (pk18) functionally substitutes for its homologue TspO in R. sphaeroides, negatively affecting transcription of specific photosynthesis genes []. This suggests that PBR may function as an oxygen sensor, transducing an oxygen-triggered signal leading to an adaptive cellular response. These observations suggest that fundamental aspects of this receptor and the downstream signal transduction pathway are conserved in bacteria and higher eukaryotic mitochondria. The alpha-3 subdivision of the purple bacteria is considered to be a likely source of the endosymbiont that ultimately gave rise to the mitochondrion. Therefore, it is possible that the mammalian PBR remains both evolutionarily and functionally related to the TspO of R. sphaeroides.; GO: 0016021 integral to membrane
Probab=100.00 E-value=1.8e-40 Score=264.78 Aligned_cols=143 Identities=31% Similarity=0.516 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHcCC--ccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhcC-CCCcchhHHHHHHHHHH
Q 036337 54 MAVALPLSLTLLNIYFNGS--SDRYVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEG-GFHKKPTVLYLCLAQLG 130 (197)
Q Consensus 54 ~~i~~p~~~g~~~~~~~~~--~~wY~~L~KP~w~PP~~vF~ivW~ilY~lmg~A~~lv~~~~-~~~~~~~al~ly~~ql~ 130 (197)
+++++|.++|.++++++++ ++||++|+||+|+||+|+|+++|+++|++||+|+|++|+++ +.++++.++.+|.+|++
T Consensus 2 i~~~~~~~~~~~~~~~~~~~~~~wy~~L~kP~~~Pp~~~f~~vW~~ly~l~g~a~~~v~~~~~~~~~~~~~l~l~~~~l~ 81 (148)
T PF03073_consen 2 IFIAAPLVVGFLSGYLTPTDVSEWYDSLKKPSWTPPGWVFGPVWTILYILMGIASYLVWRKGGGSPRRRRALALYAIQLA 81 (148)
T ss_pred eeeHHHHHHHHHHHHHcCCcchHHHhhccCCCCCCcccHHHHHHHHHHHHHHHHHHhhHhcccCcchhHHHHHHHHHHHH
Confidence 5678899999999999865 47899999999999999999999999999999999999987 44556789999999999
Q ss_pred hhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHhhh
Q 036337 131 LSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKPCVAWAALLSLVNLKLVF 196 (197)
Q Consensus 131 LN~~W~~lfF~~~~~~lali~il~l~~~~~~~~~~f~~i~~~Ag~Ll~PYl~W~~fAt~LN~~i~~ 196 (197)
+|.+|+++||+.|++++|+++++++++++..++..++++||.||++++||++|++|||++|+++|+
T Consensus 82 ln~~W~~ifF~~~~~~la~~~~~~l~~~~~~~~~~~~~~~~~a~~l~~Pyl~W~~fAt~Ln~~i~~ 147 (148)
T PF03073_consen 82 LNFAWSPIFFGLRSLGLALIIILALLGLLAALIFAFWKISRTAGLLLIPYLAWLSFATYLNFSIWR 147 (148)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999986
No 2
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-39 Score=261.43 Aligned_cols=147 Identities=26% Similarity=0.448 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcC-Cc-cccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCc-chhHHHHHH
Q 036337 50 KSLSMAVALPLSLTLLNIYFNG-SS-DRYVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEGGFHK-KPTVLYLCL 126 (197)
Q Consensus 50 ~~l~~~i~~p~~~g~~~~~~~~-~~-~wY~~L~KP~w~PP~~vF~ivW~ilY~lmg~A~~lv~~~~~~~~-~~~al~ly~ 126 (197)
.++..++++..+.+.+++++.. .+ +||++|+||+|.||+|+||+||+++|++||+|+|++|+++..++ .+..+.+|+
T Consensus 6 ~~~~~~i~~~~~~~a~gs~~~~~~~~~wy~~L~kP~w~pp~~~f~~vWtvLy~l~~iSa~lvW~~~~~~~~~~~~~~ly~ 85 (161)
T COG3476 6 KPLWLSILLVALAVALGSFFISSRDPNWYNNLKKPFWLPPEWAFPPVWTVLYALIGISAYLVWEKGPGQGTSWLLMFLYL 85 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHhccCCCCCChHHHhhHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 3455566666666666666653 33 58999999999999999999999999999999999999885444 578899999
Q ss_pred HHHHhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHhhh
Q 036337 127 AQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKPCVAWAALLSLVNLKLVF 196 (197)
Q Consensus 127 ~ql~LN~~W~~lfF~~~~~~lali~il~l~~~~~~~~~~f~~i~~~Ag~Ll~PYl~W~~fAt~LN~~i~~ 196 (197)
+|+++|++|+|+||++|++++|+++++.++++++.++..++|+|++|++|++||++|++||||||+.|++
T Consensus 86 ~ql~ln~awspiff~l~~l~~a~i~~lll~~~vl~l~i~~~~~s~~As~LLiPYllW~~fat~L~~~i~~ 155 (161)
T COG3476 86 LQLILNFAWSPIFFGLRSLGAALIIILLLWIAVLVLTIIVWPISKTASLLLIPYLLWSPFATYLNFSIWQ 155 (161)
T ss_pred HHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985
No 3
>PHA02980 hypothetical protein; Provisional
Probab=100.00 E-value=3.7e-39 Score=260.55 Aligned_cols=120 Identities=18% Similarity=0.267 Sum_probs=114.9
Q ss_pred ccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHH
Q 036337 75 RYVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEGGFHKKPTVLYLCLAQLGLSLAWDPIVFHLGAYWAGLVVSTA 154 (197)
Q Consensus 75 wY~~L~KP~w~PP~~vF~ivW~ilY~lmg~A~~lv~~~~~~~~~~~al~ly~~ql~LN~~W~~lfF~~~~~~lali~il~ 154 (197)
.|++|+||+|+||+|+||+||+++|++||+|+|++|++++ +.+.++.+|++|+++|++|+++||++|++++|++++++
T Consensus 32 ~Y~~L~KP~~~PP~wvF~pVWtiLY~lMgiA~~lvw~~~~--~~~~al~ly~~QL~LN~~WS~iFF~~~~~~lAli~ill 109 (160)
T PHA02980 32 NYTKSNKHLIFPPYYVRFSLYIISYIFMGHGMYLIHTRRR--DSNELIAYYILQLSINLSWFIVFYEMHMLRLSIAISTF 109 (160)
T ss_pred CCccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Confidence 4999999999999999999999999999999999997732 25788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHhhh
Q 036337 155 LSGSLVWYCRVVEEVNPIAGDLMKPCVAWAALLSLVNLKLVF 196 (197)
Q Consensus 155 l~~~~~~~~~~f~~i~~~Ag~Ll~PYl~W~~fAt~LN~~i~~ 196 (197)
++++++.++..|+++|+.||+|++||++|++|||+||+++|+
T Consensus 110 L~~lv~~~~~~f~~i~~~Aa~LliPYl~Wv~FAt~LN~~I~~ 151 (160)
T PHA02980 110 SICLSVYNIYLWRFETDIIDKYVLPYLVTSYINLLLNYYIIR 151 (160)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999986
No 4
>KOG3797 consensus Peripheral-type benzodiazepine receptor and related proteins [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-37 Score=247.60 Aligned_cols=147 Identities=29% Similarity=0.310 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCC-CC--cchhHHHHHH
Q 036337 50 KSLSMAVALPLSLTLLNIYFNGSSDRYVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEGG-FH--KKPTVLYLCL 126 (197)
Q Consensus 50 ~~l~~~i~~p~~~g~~~~~~~~~~~wY~~L~KP~w~PP~~vF~ivW~ilY~lmg~A~~lv~~~~~-~~--~~~~al~ly~ 126 (197)
++...++..|.++|..++-..+..+||+.|+||+|.||++||+++|+.+|..||+++|+||+++| +. ..+.++++|.
T Consensus 11 ~~~~~~~l~p~~~~~f~~~~q~~~~wya~lKkPs~~Pp~~vf~pvw~llys~mGYaSyLvyK~gggf~~naakl~lglYg 90 (168)
T KOG3797|consen 11 ISKNGASLVPVLGGWFIGNSQKPRKWYANLKKPSFHPPASVFGPVWTLLYSTMGYASYLVYKAGGGFITNAAKLPLGLYG 90 (168)
T ss_pred hhhcceeecccceeEEecCCcchHHHHHhccCCCCCCccccccHHHHHHHcccccceeEEEecCCCcccccccchhHHHH
Confidence 33444777788888777622223479999999999999999999999999999999999999985 43 3478899999
Q ss_pred HHHHhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHHHhhh
Q 036337 127 AQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKPCVAWAALLSLVNLKLVF 196 (197)
Q Consensus 127 ~ql~LN~~W~~lfF~~~~~~lali~il~l~~~~~~~~~~f~~i~~~Ag~Ll~PYl~W~~fAt~LN~~i~~ 196 (197)
.|+.+|++|+|+||+.++++++++++.++.+++.++...||+++|+||.|++||++|+.|||+||+.||.
T Consensus 91 aqlaln~Aw~Pif~g~~~~g~~l~dl~~ls~aaaa~~~a~y~v~~tAglllvPylaWlafatyL~y~v~k 160 (168)
T KOG3797|consen 91 AQLALNWAWMPIFFGLAKPGLALADLGILSGAAAALAVAWYPVAPTAGLLLVPYLAWLAFATYLNYNVWK 160 (168)
T ss_pred HHHHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHHhheeecCcccceeehHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999984
No 5
>COG4709 Predicted membrane protein [Function unknown]
Probab=82.43 E-value=27 Score=29.49 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=19.5
Q ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 036337 134 AWDPIVFHLGAYWAGLVVSTALSGSLVWYCRVV 166 (197)
Q Consensus 134 ~W~~lfF~~~~~~lali~il~l~~~~~~~~~~f 166 (197)
.-+-.|++..+..+++..+.+.+..+-+.++.+
T Consensus 146 ~i~a~f~~IGs~lLgl~~~~~if~iv~~~~rl~ 178 (195)
T COG4709 146 SISAFFIGIGSLLLGLGLGIVIFAIVKYASRLT 178 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334446666777777776666665555544433
No 6
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=75.72 E-value=60 Score=29.14 Aligned_cols=62 Identities=19% Similarity=0.107 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHc-CC--c--cccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCC
Q 036337 52 LSMAVALPLSLTLLNIYFN-GS--S--DRYVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEGG 114 (197)
Q Consensus 52 l~~~i~~p~~~g~~~~~~~-~~--~--~wY~~L~KP~w~PP~~vF~ivW~ilY~lmg~A~~lv~~~~~ 114 (197)
.+.+++.|+..|..-+-+. +- + ..|..---+.++|...+.++.=..+|...|. .|+.++..+
T Consensus 119 ~~gSll~~~~~G~~~g~~~~G~p~~~~~~~~g~~~~~l~pf~ll~Gl~~v~~~~~~GA-~~l~~kt~g 185 (328)
T PF02322_consen 119 FIGSLLPPFLLGVALGNLVSGLPIDANGNYTGGFFDLLSPFSLLGGLAVVALFALHGA-VFLALKTEG 185 (328)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCcccccccccCchHHhccHHHHHHHHHHHHHHHHHHH-HHHHhhccH
Confidence 3455777777776654433 21 1 2254433455788888888877777777774 688887765
No 7
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=72.46 E-value=4.3 Score=30.76 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 036337 54 MAVALPLSLTLLNIYFNGSSDRYVKQEKPFWFPSLLVLHTASLASTFLMGLSS 106 (197)
Q Consensus 54 ~~i~~p~~~g~~~~~~~~~~~wY~~L~KP~w~PP~~vF~ivW~ilY~lmg~A~ 106 (197)
..+++|.++|+..|.-. +++|.+ +|+ |+++++++|+++
T Consensus 50 ~~~v~pil~G~~lG~WL--D~~~~t--~~~-----------~tl~~lllGv~~ 87 (100)
T TIGR02230 50 WSVAIPTLLGVAVGIWL--DRHYPS--PFS-----------WTLTMLIVGVVI 87 (100)
T ss_pred HHHHHHHHHHHHHHHHH--HhhcCC--CcH-----------HHHHHHHHHHHH
Confidence 34555655555544432 334543 333 666666776654
No 8
>PLN02953 phosphatidate cytidylyltransferase
Probab=72.21 E-value=87 Score=29.37 Aligned_cols=28 Identities=11% Similarity=0.229 Sum_probs=12.2
Q ss_pred CCcccccchhhhcCCccchhhhhhhhhhhh
Q 036337 19 DTANVDKDNEVIKGGKRNNHQRKMVMAKRG 48 (197)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~ 48 (197)
..+.+|+-+|.-++.+ |.||++++.+|-
T Consensus 75 ~~~~~~~~~~~~~~~~--~~~~~~~l~~RI 102 (403)
T PLN02953 75 HAKEIDRIHDLQNVED--KQKKASQLKKRV 102 (403)
T ss_pred ccchhhhhcccccccc--cccccccHHHHH
Confidence 3344444444444443 334555555443
No 9
>PF08248 Tryp_FSAP: Tryptophyllin-3 skin active peptide; InterPro: IPR013266 PdT-3 or Tryptophyllin-3 peptide is a subfamily of the family Tryptophyllin and of the superfamily FSAP (Frog Skin Active Peptide). Originally identified in skin extracts of Neotropical leaf frogs, Phyllomedusa sp. This subfamily has an average length of 13 amino acids. The pharmacological activity of the tryptophyllins remains to be established [] but it seems that these peptides possess an action on liver protein synthesis and body weight []. It is thought to possesses insulin-releasing activity [].
Probab=70.33 E-value=2.5 Score=19.99 Aligned_cols=10 Identities=60% Similarity=1.418 Sum_probs=8.1
Q ss_pred CCCCCCCCch
Q 036337 80 EKPFWFPSLL 89 (197)
Q Consensus 80 ~KP~w~PP~~ 89 (197)
+||.|-||-+
T Consensus 1 ekpfw~ppiy 10 (12)
T PF08248_consen 1 EKPFWPPPIY 10 (12)
T ss_pred CCccCCCCcc
Confidence 5899999954
No 10
>COG4603 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=67.92 E-value=1e+02 Score=28.38 Aligned_cols=135 Identities=18% Similarity=0.058 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCc-c-ccCCCCCCCCCCCc-hhHHHHHHHHHHHHHHHHHHHhhcCCCC--cch-hH
Q 036337 48 GLKSLSMAVALPLSLTLLNIYFNGSS-D-RYVKQEKPFWFPSL-LVLHTASLASTFLMGLSSWLVWAEGGFH--KKP-TV 121 (197)
Q Consensus 48 ~~~~l~~~i~~p~~~g~~~~~~~~~~-~-wY~~L~KP~w~PP~-~vF~ivW~ilY~lmg~A~~lv~~~~~~~--~~~-~a 121 (197)
+.....+++++.++.+.+--.+.+.+ . -|..+-+.++..+. .-....=...++++|++.-+..+.+-++ .+. ..
T Consensus 14 ~~~~pl~ai~l~~~~~a~~~~~~G~~p~~~~~~lf~~~f~~~~~i~~~l~~~~pliltgL~~ava~raGlfNIG~EGQ~~ 93 (356)
T COG4603 14 SILSPLIAILLALIVGALLLLLLGYDPLAAYSALFVGAFGSPWSIGELLVKAAPLILTGLGVAVAFRAGLFNIGAEGQFY 93 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeeChHHHHH
Confidence 44444455555555544444444544 2 38777655555553 5555566688889999888777776432 122 22
Q ss_pred HHHHHHHHHhhhhhh-HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhHHHH
Q 036337 122 LYLCLAQLGLSLAWD-PIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKPCVA 182 (197)
Q Consensus 122 l~ly~~ql~LN~~W~-~lfF~~~~~~lali~il~l~~~~~~~~~~f~~i~~~Ag~Ll~PYl~ 182 (197)
++...+-++...... |-++...-..++-..-.++++.+....+.+..+|..-.-+|+=|.+
T Consensus 94 ~Gai~a~~~~~~~~~~p~~l~~p~a~l~g~~~G~~wa~ipg~Lka~f~~nEVIttiMlNyIa 155 (356)
T COG4603 94 AGAIAAALVALLFPDLPSWLALPLALLAGAAGGGLWALIPGLLKARFGVNEVITTIMLNYIA 155 (356)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 233333332222222 3344444444455556677888888889999999988877777664
No 11
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=63.47 E-value=1.2e+02 Score=27.77 Aligned_cols=64 Identities=19% Similarity=0.183 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHcCC----ccccCCCCCCC-CCCCchhHHHHHHHHHHHHHHHHHHHhhcCC
Q 036337 50 KSLSMAVALPLSLTLLNI-YFNGS----SDRYVKQEKPF-WFPSLLVLHTASLASTFLMGLSSWLVWAEGG 114 (197)
Q Consensus 50 ~~l~~~i~~p~~~g~~~~-~~~~~----~~wY~~L~KP~-w~PP~~vF~ivW~ilY~lmg~A~~lv~~~~~ 114 (197)
..-+.+.+.|+..|..-+ ++.+- ++.|..+.-+. .+||.-.=+++-..+|.+.|. +|++.+..+
T Consensus 124 ~~~igs~~~~~~~Gvalg~~~~G~pi~~~~~~~g~~~~~l~~pf~~l~gl~~~~~~~l~Ga-~~l~~kT~g 193 (346)
T COG1294 124 AFFIGSFLPPLLLGVALGNLLQGVPIELNGGYAGLSFDQLLNPFALLCGLGLVLMYVLHGA-AWLLLKTEG 193 (346)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCceeccCCCcccccHHHHhCcHHHHHHHHHHHHHHHHHH-HHHHHHhcc
Confidence 344556777888877766 43331 23366555444 458888888888889988886 577665544
No 12
>PF03733 DUF307: Domain of unknown function (DUF307); InterPro: IPR005185 This proteins contain a domain which occurs as one or more copies in a small family of putative membrane proteins.
Probab=58.37 E-value=51 Score=21.90 Aligned_cols=13 Identities=15% Similarity=0.071 Sum_probs=9.3
Q ss_pred HhhhhhhHHHHhhh
Q 036337 130 GLSLAWDPIVFHLG 143 (197)
Q Consensus 130 ~LN~~W~~lfF~~~ 143 (197)
+.|..|... |+.-
T Consensus 2 l~NilW~i~-~G~~ 14 (53)
T PF03733_consen 2 LGNILWFIF-FGWW 14 (53)
T ss_pred hHHHHHHHH-HHHH
Confidence 579999984 4643
No 13
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=57.14 E-value=14 Score=27.61 Aligned_cols=46 Identities=20% Similarity=0.104 Sum_probs=22.7
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHc-CCccccCCCCCCCCC
Q 036337 39 QRKMVMAKRGLKSLSMAVALPLSLTLLNIYFN-GSSDRYVKQEKPFWF 85 (197)
Q Consensus 39 ~~~~~m~~~~~~~l~~~i~~p~~~g~~~~~~~-~~~~wY~~L~KP~w~ 85 (197)
.+++++.-..+..++.++.+.+++-. .-|+. -+.+.+...++|+++
T Consensus 55 ~~~~~~~~iili~lls~v~IlVily~-IyYFVILRer~~~~~~~p~~~ 101 (101)
T PF06024_consen 55 ASKQNNGNIILISLLSFVCILVILYA-IYYFVILRERQKSIRNQPSFM 101 (101)
T ss_pred ccccccccchHHHHHHHHHHHHHHhh-heEEEEEecccccccCCCCcC
Confidence 34455544555555555554444433 23333 334444445778763
No 14
>TIGR00203 cydB cytochrome d oxidase, subunit II (cydB). part of a two component cytochrome D terminal complex. Terminal reaction in the aerobic respiratory chain.
Probab=51.06 E-value=2.1e+02 Score=26.54 Aligned_cols=63 Identities=19% Similarity=0.156 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHc-CCc--c------ccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCC
Q 036337 51 SLSMAVALPLSLTLLNIYFN-GSS--D------RYVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEGG 114 (197)
Q Consensus 51 ~l~~~i~~p~~~g~~~~~~~-~~~--~------wY~~L~KP~w~PP~~vF~ivW~ilY~lmg~A~~lv~~~~~ 114 (197)
-.+.+++.|+..|..-+-+. +-. + .|..---...+|..++.+..=..+|...|. .|+..+..|
T Consensus 123 f~vgSll~p~~lGv~~g~~~~G~~~~~~~~~~~~~~g~~~~ll~Pfsll~Gl~~v~~~~~~GA-~~L~~kt~g 194 (378)
T TIGR00203 123 LFIGSLVPPLVFGVAFGNLLQGVPFDFDENLRVHYTGSFFQLLNPFSLLCGVTSLGMCITHGA-MWLQLRTVG 194 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCeeccccccccccccccHHhhcCHHHHHHHHHHHHHHHHHHH-HHHHHhhcc
Confidence 34566778888777755443 211 1 232111234678888888888888888885 688887765
No 15
>PRK15003 cytochrome d ubiquinol oxidase subunit 2; Provisional
Probab=48.38 E-value=2.3e+02 Score=26.32 Aligned_cols=63 Identities=16% Similarity=0.119 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHc-CC----cc----ccCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhcCC
Q 036337 51 SLSMAVALPLSLTLLNIYFN-GS----SD----RYVKQEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEGG 114 (197)
Q Consensus 51 ~l~~~i~~p~~~g~~~~~~~-~~----~~----wY~~L~KP~w~PP~~vF~ivW~ilY~lmg~A~~lv~~~~~ 114 (197)
-.+.+++.|+..|.+-|-+. +- ++ .|..---+.++|..-+-+++=..+|.+.|. .|++.+..|
T Consensus 123 f~igSll~~f~~Gv~lg~~v~G~p~~~d~~~~~~~~g~~~~~l~Pfsll~Gl~~v~~~~~~GA-~~L~~KT~g 194 (379)
T PRK15003 123 IFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGA-TYLQMRTVG 194 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccccccccccccchHhhccHHHHHHHHHHHHHHHHHHH-HHHHHHcch
Confidence 34566777887777654443 32 11 243333456788888889888899999996 688888765
No 16
>PF04896 AmoC: Ammonia monooxygenase/methane monooxygenase, subunit C; InterPro: IPR006980 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The C subunit from Methylococcus capsulatus str. Bath resides primarily in the membrane and consists of five transmembrane helices. Several conserved residues contribute to a metal binding centre [].; PDB: 1YEW_G 3RFR_K 3RGB_G 3CHX_C.
Probab=47.69 E-value=29 Score=30.32 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=33.7
Q ss_pred HHHHc-CCccccCCC-CCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhcC
Q 036337 66 NIYFN-GSSDRYVKQ-EKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEG 113 (197)
Q Consensus 66 ~~~~~-~~~~wY~~L-~KP~w~PP~~vF~ivW~ilY~lmg~A~~lv~~~~ 113 (197)
+++++ .+++|.++. +--+|+|.+++---.---+|+.||.++++..+.+
T Consensus 119 aSfFtEQDgsWHQt~iRDT~FTPSHii~FY~s~Pi~i~~g~g~~~ya~TR 168 (251)
T PF04896_consen 119 ASFFTEQDGSWHQTVIRDTDFTPSHIIEFYLSYPIYIIMGVGSFLYARTR 168 (251)
T ss_dssp HTHHHHHHHHHHCCS--SSSTSHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred hheeeccCCceeeeeeecCCCChHHHHHHHHhhhHHHHHHHHHHhhhhcc
Confidence 45555 456886664 4678999998543334467899999999987665
No 17
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=45.68 E-value=1.5e+02 Score=23.25 Aligned_cols=16 Identities=13% Similarity=-0.089 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHhhhh
Q 036337 119 PTVLYLCLAQLGLSLA 134 (197)
Q Consensus 119 ~~al~ly~~ql~LN~~ 134 (197)
+.+++.|+.|.++...
T Consensus 92 rmaLT~Yi~qsii~~~ 107 (163)
T PF04235_consen 92 RMALTNYILQSIIGTL 107 (163)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3568899999776654
No 18
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=44.84 E-value=29 Score=29.79 Aligned_cols=26 Identities=12% Similarity=0.247 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCC
Q 036337 47 RGLKSLSMAVALPLSLTLLNIYFNGS 72 (197)
Q Consensus 47 ~~~~~l~~~i~~p~~~g~~~~~~~~~ 72 (197)
++++-+++.|++.+++.++..+|++.
T Consensus 13 N~iLNiaI~IV~lLIiiva~~lf~~~ 38 (217)
T PF07423_consen 13 NKILNIAIGIVSLLIIIVAYQLFFGG 38 (217)
T ss_pred hhhHHHHHHHHHHHHHHHhhhheecC
Confidence 36666777777666655554555543
No 19
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=42.96 E-value=27 Score=24.07 Aligned_cols=14 Identities=29% Similarity=0.062 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 036337 55 AVALPLSLTLLNIY 68 (197)
Q Consensus 55 ~i~~p~~~g~~~~~ 68 (197)
+++++.+.+.+|.+
T Consensus 42 ~~~~c~~S~~lG~~ 55 (60)
T PF06072_consen 42 VVALCVLSGGLGAL 55 (60)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 20
>PF12976 DUF3860: Domain of Unknown Function with PDB structure (DUF3860); InterPro: IPR024619 This protein family includes hypothetical protein (JCVI_PEP_1096688149193) whose crystal structure has been solved PDB:2OD5. The hypothetical protein is from an environmental metagenome (unidentified marine microbe).
Probab=39.79 E-value=11 Score=27.63 Aligned_cols=12 Identities=33% Similarity=0.620 Sum_probs=10.9
Q ss_pred CCchhhhhhhcC
Q 036337 1 MATENLKKRTRD 12 (197)
Q Consensus 1 ~~~~~~~~~~~~ 12 (197)
|+||||+|.+|+
T Consensus 1 M~s~~LR~~Ir~ 12 (92)
T PF12976_consen 1 MDSQNLRDLIRN 12 (92)
T ss_pred CchhHHHHHHHH
Confidence 999999999884
No 21
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=36.29 E-value=31 Score=28.06 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=20.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Q 036337 45 AKRGLKSLSMAVALPLSLTLLNIY 68 (197)
Q Consensus 45 ~~~~~~~l~~~i~~p~~~g~~~~~ 68 (197)
..|..+..++++.+|.++|+..-.
T Consensus 58 s~RM~rRm~~~~GiP~~lG~~~f~ 81 (153)
T PF11947_consen 58 SNRMLRRMAVFVGIPTALGVAVFV 81 (153)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHH
Confidence 558999999999999999976533
No 22
>TIGR03078 CH4_NH3mon_ox_C methane monooxygenase/ammonia monooxygenase, subunit C. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit C of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=36.16 E-value=58 Score=27.97 Aligned_cols=48 Identities=15% Similarity=0.220 Sum_probs=34.8
Q ss_pred HHHHc-CCccccCC-CCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhcC
Q 036337 66 NIYFN-GSSDRYVK-QEKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEG 113 (197)
Q Consensus 66 ~~~~~-~~~~wY~~-L~KP~w~PP~~vF~ivW~ilY~lmg~A~~lv~~~~ 113 (197)
+++++ .+++|.++ .+-.+|+|.++.---.---+|+.+|+++++..+.+
T Consensus 107 aSfFtEQDgswHqt~iRDt~FTPsHi~~fy~s~Piyii~G~~~~~ya~TR 156 (229)
T TIGR03078 107 ASFFTEQDGSWHQTIVRDTDFTPSHIIEFYGSYPIYIIMGIASFIYAKTR 156 (229)
T ss_pred hhheeeccCceeeeeeecCCCChHHHHHHHhhccHHhhhhhhheeeeecc
Confidence 45666 56788665 45678999998554556678999999988776543
No 23
>PF15284 PAGK: Phage-encoded virulence factor
Probab=36.09 E-value=71 Score=22.11 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=12.2
Q ss_pred ccCCCCCCCCC---CCchhHHHHH
Q 036337 75 RYVKQEKPFWF---PSLLVLHTAS 95 (197)
Q Consensus 75 wY~~L~KP~w~---PP~~vF~ivW 95 (197)
...+-.+|.|+ |++--||.-|
T Consensus 33 ~~~~~~~P~wC~lwP~g~~iP~~~ 56 (61)
T PF15284_consen 33 RKPANIKPVWCDLWPAGIPIPEDW 56 (61)
T ss_pred CCCcCCCChHHhcCCCCCCCCchH
Confidence 36666788432 6665565544
No 24
>PF10958 DUF2759: Protein of unknown function (DUF2759); InterPro: IPR024490 This family of proteins with unknown function appear to be restricted to Bacillales.
Probab=33.26 E-value=1.5e+02 Score=19.87 Aligned_cols=38 Identities=8% Similarity=0.147 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhhhhH---HHHhhHHHHHHHHHHHHHHH
Q 036337 156 SGSLVWYCRVVEEVNPIA---GDLMKPCVAWAALLSLVNLK 193 (197)
Q Consensus 156 ~~~~~~~~~~f~~i~~~A---g~Ll~PYl~W~~fAt~LN~~ 193 (197)
+..+..+.+.+++.|..+ |..-.--++|-+++|+++.+
T Consensus 7 lla~~g~~rslK~KN~l~i~F~~~t~~VFGwFtimTii~~g 47 (52)
T PF10958_consen 7 LLAAFGVLRSLKNKNFLGIGFALVTVAVFGWFTIMTIIHSG 47 (52)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 345566777788888766 44456689999999999865
No 25
>PRK15028 cytochrome bd-II oxidase subunit 2; Provisional
Probab=31.83 E-value=4.2e+02 Score=24.54 Aligned_cols=61 Identities=20% Similarity=0.166 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHc-CCc---ccc-C-CCCCCC---CCCCchhHHHHHHHHHHHHHHHHHHHhhcCC
Q 036337 53 SMAVALPLSLTLLNIYFN-GSS---DRY-V-KQEKPF---WFPSLLVLHTASLASTFLMGLSSWLVWAEGG 114 (197)
Q Consensus 53 ~~~i~~p~~~g~~~~~~~-~~~---~wY-~-~L~KP~---w~PP~~vF~ivW~ilY~lmg~A~~lv~~~~~ 114 (197)
+.+++.|+..|..-|-.. +-. +.. . +..-+. ++|..-+-++.=..+|.+.|. .|++.+..|
T Consensus 125 vgS~l~~f~~Gv~~g~~v~G~p~~~d~~~~~~~~G~~~~~l~Pf~ll~Gl~~v~l~~l~Ga-~~L~~KT~g 194 (378)
T PRK15028 125 IGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGG-VWLQLKTVG 194 (378)
T ss_pred HHHHHHHHHHHHHHHHHHcCceecccccccccccccHHhhccHHHHHHHHHHHHHHHHHHH-HHHHHHcch
Confidence 556777777777654433 311 111 1 111222 678888888888899999996 689888765
No 26
>PRK10927 essential cell division protein FtsN; Provisional
Probab=31.41 E-value=45 Score=30.25 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHc
Q 036337 48 GLKSLSMAVALPLSLTLLNIYFN 70 (197)
Q Consensus 48 ~~~~l~~~i~~p~~~g~~~~~~~ 70 (197)
+..+..+++++.+++.++||+++
T Consensus 31 ~~~~~m~alAvavlv~fiGGLyF 53 (319)
T PRK10927 31 AVSPAMVAIAAAVLVTFIGGLYF 53 (319)
T ss_pred CcchHHHHHHHHHHHHHhhheEE
Confidence 45555666666666777777765
No 27
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=30.53 E-value=4.5e+02 Score=24.50 Aligned_cols=50 Identities=18% Similarity=0.051 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCccccCCCC-CCCCCCCchhHHHHHHHHHH
Q 036337 48 GLKSLSMAVALPLSLTLLNIYFNGSSDRYVKQE-KPFWFPSLLVLHTASLASTF 100 (197)
Q Consensus 48 ~~~~l~~~i~~p~~~g~~~~~~~~~~~wY~~L~-KP~w~PP~~vF~ivW~ilY~ 100 (197)
..+++.. ..+|+....+.-|+...+- .+++- +..+..|.--++. +..+|-
T Consensus 241 ~~k~Ll~-ymiPL~lVY~aEY~InqGv-~~tl~fp~~~~~~r~~Y~~-Y~~~YQ 291 (402)
T PF02487_consen 241 RLKPLLW-YMIPLFLVYFAEYFINQGV-APTLLFPNSFFSPRDQYRW-YQLLYQ 291 (402)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhch-HHHhcCCccCCCHHHHHHH-HHHHHH
Confidence 4444544 7789998888888653221 22222 2224444444443 677774
No 28
>PF07062 Clc-like: Clc-like; InterPro: IPR010761 Clc proteins are a nine-member gene family of chloride channels that have diverse roles in the plasma membrane and in intracellular organelles, especially membrane excitability and the maintenance of osmotic balance [, ]. This family contains a number of Clc-like proteins that are approximately 250 residues long and their homologues. ; GO: 0016021 integral to membrane
Probab=28.46 E-value=2.1e+02 Score=24.35 Aligned_cols=54 Identities=13% Similarity=0.034 Sum_probs=35.3
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHHH
Q 036337 136 DPIVFHLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKPCVAWAALLSLVNL 192 (197)
Q Consensus 136 ~~lfF~~~~~~lali~il~l~~~~~~~~~~f~~i~~~Ag~Ll~PYl~W~~fAt~LN~ 192 (197)
.+.||+.|.-.+.++....+++.+..+....-+..|..+ +-|-+++.+|+.++.
T Consensus 97 ~h~F~gWh~AvLil~~~s~lf~~lsi~~~iCa~c~~~~a---i~~~v~~~ia~l~S~ 150 (211)
T PF07062_consen 97 THCFFGWHKAVLILISFSMLFALLSICFGICAPCHPSFA---IFYTVLVFIAALLSL 150 (211)
T ss_pred cceehhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcHH---HHHHHHHHHHHHHHH
Confidence 456777777777777777777666666655555555555 556666666666654
No 29
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=27.66 E-value=6.2e+02 Score=25.14 Aligned_cols=18 Identities=17% Similarity=-0.029 Sum_probs=13.1
Q ss_pred CCCCCCCCCCCchhHHHH
Q 036337 77 VKQEKPFWFPSLLVLHTA 94 (197)
Q Consensus 77 ~~L~KP~w~PP~~vF~iv 94 (197)
.....|.|.|..|.|-++
T Consensus 329 ~gf~~p~~~~~R~~fi~~ 346 (843)
T PF09586_consen 329 NGFSYPNGFPYRWSFIFI 346 (843)
T ss_pred hCCccccccchHHHHHHH
Confidence 345778888888887763
No 30
>TIGR01165 cbiN cobalt transport protein. This model describes the cobalt transporter in bacteria and its equivalents in archaea. It principally functions in the ion uptake mechanism. It is a multisubunit transporter with two integral membrane proteins and two closely associated cytoplasmic subunits. This transporter belongs to the ABC transporter superfamily (ATP stands for ATP Binding Cassette). This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=26.43 E-value=91 Score=23.27 Aligned_cols=13 Identities=31% Similarity=0.636 Sum_probs=10.2
Q ss_pred cCCCCCCCCCCCc
Q 036337 76 YVKQEKPFWFPSL 88 (197)
Q Consensus 76 Y~~L~KP~w~PP~ 88 (197)
|+---+|-|.||+
T Consensus 51 Y~PWf~PlwEPps 63 (91)
T TIGR01165 51 YKPWFSPLWEPPS 63 (91)
T ss_pred CcccccccccCCc
Confidence 7777788888884
No 31
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=25.19 E-value=4.5e+02 Score=22.77 Aligned_cols=63 Identities=11% Similarity=-0.073 Sum_probs=32.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 036337 86 PSLLVLHTASLASTFLMGLSSWLVWAEGGFHKKPTVLYLCLAQLGLSLAWDPIVFHLGAYWAGLVVSTALSGSLVWYCRV 165 (197)
Q Consensus 86 PP~~vF~ivW~ilY~lmg~A~~lv~~~~~~~~~~~al~ly~~ql~LN~~W~~lfF~~~~~~lali~il~l~~~~~~~~~~ 165 (197)
|....|+++|.++-+.+ =-|+|-...+... .|.- |..-.+.+.+..+++..++-......
T Consensus 46 ~~ai~~glvwgl~I~~l--DR~ivss~~~~~~----------------~~~~--~~~~~~R~~lAvliaivIs~pl~l~i 105 (301)
T PF14362_consen 46 WAAIPFGLVWGLVIFNL--DRFIVSSIRKSDG----------------SRKR--LLQALPRLLLAVLIAIVISEPLELKI 105 (301)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHhccccccc----------------hHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667888888773333 2455554433211 0111 12234445555556666666666666
Q ss_pred HHh
Q 036337 166 VEE 168 (197)
Q Consensus 166 f~~ 168 (197)
|.+
T Consensus 106 F~~ 108 (301)
T PF14362_consen 106 FEK 108 (301)
T ss_pred HHH
Confidence 653
No 32
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=24.38 E-value=44 Score=22.77 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=16.0
Q ss_pred CccchhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 036337 33 GKRNNHQRKMVMAKRGLKSLSMAVALPLSLTLL 65 (197)
Q Consensus 33 ~~~~~~~~~~~m~~~~~~~l~~~i~~p~~~g~~ 65 (197)
+++.|+|+|-.|. ....=+..+++|.+++++
T Consensus 12 T~K~K~ERk~~~~--e~~~kv~tVVlP~l~~~~ 42 (56)
T PF15012_consen 12 TRKQKKERKKEMQ--EAQQKVFTVVLPTLAAVF 42 (56)
T ss_pred hHHHHHHHHHHHH--HHHHhheeEehhHHHHHH
Confidence 4555667776664 223333445555555443
No 33
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=24.19 E-value=53 Score=30.10 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHc---CCccccCCCCCCCCCC
Q 036337 49 LKSLSMAVALPLSLTLLNIYFN---GSSDRYVKQEKPFWFP 86 (197)
Q Consensus 49 ~~~l~~~i~~p~~~g~~~~~~~---~~~~wY~~L~KP~w~P 86 (197)
..+..+.+++|++.|.+.-+.. +..+||++..+|...|
T Consensus 178 ~~Sv~lyl~iPli~G~lTR~i~~k~kg~~~~~~~f~p~isp 218 (342)
T COG0798 178 AKSVLLYLGIPLIAGVLTRYILIKKKGREWYESRFLPKISP 218 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcCh
Confidence 4567788888888888876654 2347899998887544
No 34
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=24.18 E-value=4.6e+02 Score=22.65 Aligned_cols=25 Identities=20% Similarity=0.022 Sum_probs=18.8
Q ss_pred hHHHH-HHHHHHhhhhhhHHHHhhhH
Q 036337 120 TVLYL-CLAQLGLSLAWDPIVFHLGA 144 (197)
Q Consensus 120 ~al~l-y~~ql~LN~~W~~lfF~~~~ 144 (197)
.+..+ +..|.+.+..|.+++|+.+.
T Consensus 87 ~a~~i~~~~~~v~~~l~~~~~f~e~~ 112 (290)
T TIGR00776 87 KTMPISTGFQLVGGTLFGVIVFGEWS 112 (290)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34444 44888999999999998764
No 35
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=23.16 E-value=6e+02 Score=23.48 Aligned_cols=53 Identities=19% Similarity=0.121 Sum_probs=32.4
Q ss_pred chhHHHHHHHHHHhhhhhhHH----HHh-hhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 036337 118 KPTVLYLCLAQLGLSLAWDPI----VFH-LGAYWAGLVVSTALSGSLVWYCRVVEEVN 170 (197)
Q Consensus 118 ~~~al~ly~~ql~LN~~W~~l----fF~-~~~~~lali~il~l~~~~~~~~~~f~~i~ 170 (197)
.+.++..-.+-.++|..=.++ +|+ ++-.+.|....++-++..+.+...+.+.+
T Consensus 165 ~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 165 TKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK 222 (455)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 355555555545555544444 345 66677777777777777777776666554
No 36
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=22.88 E-value=1.9e+02 Score=19.60 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 036337 48 GLKSLSMAVALPLSLTLLNIYF 69 (197)
Q Consensus 48 ~~~~l~~~i~~p~~~g~~~~~~ 69 (197)
.+.-++..+.=.+.++++++|-
T Consensus 20 ~flfl~~~l~PiL~v~~Vg~YG 41 (56)
T PF06796_consen 20 AFLFLAVVLFPILAVAFVGGYG 41 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3443433333334455566653
No 37
>COG1863 MnhE Multisubunit Na+/H+ antiporter, MnhE subunit [Inorganic ion transport and metabolism]
Probab=22.70 E-value=4.2e+02 Score=21.49 Aligned_cols=64 Identities=11% Similarity=0.069 Sum_probs=34.4
Q ss_pred HHHHhhhhhhHHH--HhhhHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhHHHHhhHHHHHHHHHHHH
Q 036337 127 AQLGLSLAWDPIV--FHLGAYWAGLVVSTALSGSLVWYC-RVVEEVNPIAGDLMKPCVAWAALLSLV 190 (197)
Q Consensus 127 ~ql~LN~~W~~lf--F~~~~~~lali~il~l~~~~~~~~-~~f~~i~~~Ag~Ll~PYl~W~~fAt~L 190 (197)
.++++-+.|..+- |...++.+|++...+.....--.. ...+.........++||+.|-...+-+
T Consensus 7 l~i~l~~~Wlll~~s~s~~~~i~G~ivg~iv~~~~~~~~~~~~~~~r~~~~i~~~~~~~~ei~~ani 73 (158)
T COG1863 7 LNILLALFWLLLTGSFSPANLILGFIVGAIVLLLLRRFLPARLYPRRLLRAIKLILVFLKELIKANI 73 (158)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566654 456666677665443332222222 233344455566678888887665543
No 38
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.28 E-value=1.3e+02 Score=21.39 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHcC
Q 036337 52 LSMAVALPLSLTLLNIYFNG 71 (197)
Q Consensus 52 l~~~i~~p~~~g~~~~~~~~ 71 (197)
.++.+++++++|+++|++..
T Consensus 6 ail~ivl~ll~G~~~G~fia 25 (71)
T COG3763 6 AILLIVLALLAGLIGGFFIA 25 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34778888999999998763
No 39
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=21.85 E-value=5.1e+02 Score=22.19 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=27.9
Q ss_pred HHHHHHHHhhhhhhHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHh
Q 036337 123 YLCLAQLGLSLAWDPIVFHLGA----YWAGLVVSTALSGSLVWYCRVVEE 168 (197)
Q Consensus 123 ~ly~~ql~LN~~W~~lfF~~~~----~~lali~il~l~~~~~~~~~~f~~ 168 (197)
..|..-..+-.+.....+-... ...++....+.++......+...+
T Consensus 91 ~~~t~l~G~tL~~i~~~Y~~~~~~~~i~~af~~t~~~F~~ls~~g~~tk~ 140 (233)
T COG0670 91 FVYTALVGLTLSPILLVYAAISGGDAIAAAFGITALVFGALSLYGYTTKR 140 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466666666666666555555 666666666666666666555544
No 40
>PRK10913 dipeptide transporter; Provisional
Probab=21.84 E-value=1.9e+02 Score=25.45 Aligned_cols=12 Identities=25% Similarity=0.169 Sum_probs=6.7
Q ss_pred hhhhcCCccchh
Q 036337 27 NEVIKGGKRNNH 38 (197)
Q Consensus 27 ~~~~~~~~~~~~ 38 (197)
||+++.+.+.+.
T Consensus 7 ~~~~~~~~~~~~ 18 (300)
T PRK10913 7 NKVISAPVPMTP 18 (300)
T ss_pred cccccccccccH
Confidence 455666666443
No 41
>KOG4740 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.24 E-value=6.6e+02 Score=24.75 Aligned_cols=81 Identities=16% Similarity=0.127 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhcCCC-C------cc---------hhHHHHHHHHHHhhhhhhHH--HH---h-----hh
Q 036337 91 LHTASLASTFLMGLSS-WLVWAEGGF-H------KK---------PTVLYLCLAQLGLSLAWDPI--VF---H-----LG 143 (197)
Q Consensus 91 F~ivW~ilY~lmg~A~-~lv~~~~~~-~------~~---------~~al~ly~~ql~LN~~W~~l--fF---~-----~~ 143 (197)
|-...++-|.|||.|. +.+|+..+. + ++ +...++|..-+.+-.+-..+ |+ . .-
T Consensus 297 flltciVEySLI~Aai~fiiWk~i~~~~~~~~~~kkK~~~R~DCs~t~~GlF~Gi~~li~s~Isi~~~~il~~~~~~~~A 376 (564)
T KOG4740|consen 297 FLLTCIVEYSLIAAAILFIIWKNIGRNPGESSKDKKKHHIRFDCSGTSVGLFLGIALLIGSFISIALFNILCSEDNPRAA 376 (564)
T ss_pred HHHHHHHHHHHHHHHHHhheeeeccCCcccccchhhcCccceecCCcchHHHHHHHHHHHHHHHHHHHHHHHcCCCchhh
Confidence 3345778899998875 556765431 0 00 12345666555555444433 11 1 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 036337 144 AYWAGLVVSTALSGSLVWYCRVVEEVNP 171 (197)
Q Consensus 144 ~~~lali~il~l~~~~~~~~~~f~~i~~ 171 (197)
....+..+++....+.+++...|+++.+
T Consensus 377 ~~v~~~~~l~~f~~a~la~l~~f~~mr~ 404 (564)
T KOG4740|consen 377 DYVVGITDLLLFVVALLACLFAFIRMRK 404 (564)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556677777777788888877664
No 42
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=20.01 E-value=35 Score=30.94 Aligned_cols=12 Identities=17% Similarity=0.171 Sum_probs=0.0
Q ss_pred CCCCCCCCchhH
Q 036337 80 EKPFWFPSLLVL 91 (197)
Q Consensus 80 ~KP~w~PP~~vF 91 (197)
++|+=+||.-.|
T Consensus 13 ~r~pr~p~~~a~ 24 (381)
T PF05297_consen 13 RRPPRCPQPHAS 24 (381)
T ss_dssp ------------
T ss_pred CCCCCCCCcchh
Confidence 456666665443
Done!