Query 036337
Match_columns 197
No_of_seqs 150 out of 834
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 20:06:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036337.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036337hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rfr_C PMOC; membrane, oxidore 59.7 7.9 0.00027 32.6 3.8 48 66-113 122-171 (256)
2 1yew_C Particulate methane mon 40.5 18 0.0006 31.0 2.9 48 66-113 149-198 (289)
3 4hkr_A Calcium release-activat 14.3 4.1E+02 0.014 21.6 6.3 37 152-188 125-166 (214)
4 4ain_A Glycine betaine transpo 13.4 2.5E+02 0.0085 26.0 5.3 60 89-164 149-212 (539)
5 2od5_A Hypothetical protein; m 11.5 37 0.0013 24.7 -0.7 12 1-12 11-22 (116)
6 4f02_C Eukaryotic translation 10.1 73 0.0025 17.4 0.3 7 28-34 18-24 (27)
7 3brd_D Protein LIN-12; protein 9.2 97 0.0033 17.4 0.6 8 80-87 13-20 (29)
8 3d31_C Sulfate/molybdate ABC t 7.6 2.6E+02 0.0088 22.6 2.9 15 53-67 49-63 (295)
9 2wsw_A BCCT family betaine/car 6.5 8.7E+02 0.03 22.1 6.1 23 89-113 147-170 (509)
10 1tac_A TAT protein; transcript 6.1 1.6E+02 0.0054 20.7 0.7 14 30-43 45-58 (86)
No 1
>3rfr_C PMOC; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_C
Probab=59.70 E-value=7.9 Score=32.63 Aligned_cols=48 Identities=8% Similarity=0.093 Sum_probs=35.0
Q ss_pred HHHHc-CCccccCCCC-CCCCCCCchhHHHHHHHHHHHHHHHHHHHhhcC
Q 036337 66 NIYFN-GSSDRYVKQE-KPFWFPSLLVLHTASLASTFLMGLSSWLVWAEG 113 (197)
Q Consensus 66 ~~~~~-~~~~wY~~L~-KP~w~PP~~vF~ivW~ilY~lmg~A~~lv~~~~ 113 (197)
+++++ .+++|.++.. --+|+|.+.+---.---+|+.||.++++.-+.+
T Consensus 122 aSfFtEQDgsWHQtviRDT~FTPSHIi~FY~s~PiyIi~g~~~~~YarTR 171 (256)
T 3rfr_C 122 ASFFTEQDGAWHMTVIRDTDFTPSHIIEFYMSYPIYSVIAVGAFFYAKTR 171 (256)
T ss_dssp HTHHHHHHHHHTTTCCCSSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccccCCceeeEEeecCCCChHHHHHHHHhchHHHHHhHHHHhheecc
Confidence 45555 4568877654 678999998654545678999999999876644
No 2
>1yew_C Particulate methane monooxygenase subunit C2; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_C
Probab=40.52 E-value=18 Score=30.98 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=35.0
Q ss_pred HHHHc-CCccccCCC-CCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhcC
Q 036337 66 NIYFN-GSSDRYVKQ-EKPFWFPSLLVLHTASLASTFLMGLSSWLVWAEG 113 (197)
Q Consensus 66 ~~~~~-~~~~wY~~L-~KP~w~PP~~vF~ivW~ilY~lmg~A~~lv~~~~ 113 (197)
+++++ .+++|.++. +--+|+|.+.+---.---+|+.||+++++.-+.+
T Consensus 149 aSfFtEQDgsWHQtviRDT~FTPSHIi~FY~s~PiyIi~Gv~~~lYArTR 198 (289)
T 1yew_C 149 ASYFTEQDGTWHQTIVRDTDFTPSHIIEFYLSYPIYIITGFAAFIYAKTR 198 (289)
T ss_dssp HTHHHHHHHHHHHHSCCSSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred heeeecccCceeeeeeecCCCChhHHHHHHHhccHHHHHHHHHHHHhhhc
Confidence 45665 466886664 4678999998655556678999999998877643
No 3
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=14.29 E-value=4.1e+02 Score=21.62 Aligned_cols=37 Identities=11% Similarity=-0.006 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHH----hhH-HHHHHHHHH
Q 036337 152 STALSGSLVWYCRVVEEVNPIAGDL----MKP-CVAWAALLS 188 (197)
Q Consensus 152 il~l~~~~~~~~~~f~~i~~~Ag~L----l~P-Yl~W~~fAt 188 (197)
.+.|.-.++.|...|+.++..|++- ++| .++.+.||.
T Consensus 125 ~LFL~evall~WVKF~~~~~~aa~~~t~vliPv~i~F~~Fa~ 166 (214)
T 4hkr_A 125 ILFLLEIAILCWVKFYDLSRRAAWSATVVLIPVMIIFMAFAI 166 (214)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhheEEeecCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777889999999877663 677 445555553
No 4
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=13.40 E-value=2.5e+02 Score=26.00 Aligned_cols=60 Identities=13% Similarity=0.188 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHhhcCCCCcchhHHHHHHHHHHhhhhhhHHHHhhh---HHHHHHHHHHHHHHHHHHHHH
Q 036337 89 LVLHTASLASTFLMGLS-SWLVWAEGGFHKKPTVLYLCLAQLGLSLAWDPIVFHLG---AYWAGLVVSTALSGSLVWYCR 164 (197)
Q Consensus 89 ~vF~ivW~ilY~lmg~A-~~lv~~~~~~~~~~~al~ly~~ql~LN~~W~~lfF~~~---~~~lali~il~l~~~~~~~~~ 164 (197)
|=+++ |. +|.+.|++ +|..++++....-+.+ --|++ +.| -..--++|++++++++..++.
T Consensus 149 WG~~~-WA-iYav~glalaY~~yrk~~pl~iss~-------------l~Pll-G~r~~~G~~G~~IDilav~atv~Gvat 212 (539)
T 4ain_A 149 WTLHP-WA-IYAIVGLAIAYSTFRVGRKQLLSSA-------------FVPLI-GEKGAEGWLGKLIDILAIIATVFGTAC 212 (539)
T ss_dssp HSHHH-HH-HHHHHHHHHHCCCCCTCCCSCTTGG-------------GHHHH-HHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred cChHH-HH-HHHHHHHHHHHHHhcCCCCCcHHHH-------------hHhhc-CCCccCCcchhhhHHHHHHHHHHHHhh
Confidence 33444 74 58888888 4666755431111222 12333 332 122236777777766665543
No 5
>2od5_A Hypothetical protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; HET: 1PE; 1.79A {Uncultured marine organism} SCOP: a.4.5.70
Probab=11.50 E-value=37 Score=24.72 Aligned_cols=12 Identities=17% Similarity=0.468 Sum_probs=10.4
Q ss_pred CCchhhhhhhcC
Q 036337 1 MATENLKKRTRD 12 (197)
Q Consensus 1 ~~~~~~~~~~~~ 12 (197)
|+||+|++++|+
T Consensus 11 M~t~rlR~kIkk 22 (116)
T 2od5_A 11 MKTVRIREKIKK 22 (116)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 789999998883
No 6
>4f02_C Eukaryotic translation initiation factor 4 gamma; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens}
Probab=10.09 E-value=73 Score=17.41 Aligned_cols=7 Identities=29% Similarity=0.909 Sum_probs=4.0
Q ss_pred hhhcCCc
Q 036337 28 EVIKGGK 34 (197)
Q Consensus 28 ~~~~~~~ 34 (197)
|+.|+++
T Consensus 18 eimsg~r 24 (27)
T 4f02_C 18 EIMSGAR 24 (27)
T ss_pred HHHhcCc
Confidence 5556654
No 7
>3brd_D Protein LIN-12; protein-DNA complex, signaling, transcription, notch; HET: DNA; 2.21A {Caenorhabditis elegans}
Probab=9.24 E-value=97 Score=17.36 Aligned_cols=8 Identities=25% Similarity=1.033 Sum_probs=4.9
Q ss_pred CCCCCCCC
Q 036337 80 EKPFWFPS 87 (197)
Q Consensus 80 ~KP~w~PP 87 (197)
+-|-|+||
T Consensus 13 ~A~vW~PP 20 (29)
T 3brd_D 13 NASVWMPP 20 (29)
T ss_pred cccccCCC
Confidence 45667666
No 8
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=7.61 E-value=2.6e+02 Score=22.56 Aligned_cols=15 Identities=20% Similarity=0.202 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 036337 53 SMAVALPLSLTLLNI 67 (197)
Q Consensus 53 ~~~i~~p~~~g~~~~ 67 (197)
+++++.|+...+..+
T Consensus 49 ~~~~~~P~~~~~~~s 63 (295)
T 3d31_C 49 FLFIFLTLSNMIFEQ 63 (295)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344556666554443
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=6.48 E-value=8.7e+02 Score=22.10 Aligned_cols=23 Identities=4% Similarity=0.092 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHH-HHHHhhcC
Q 036337 89 LVLHTASLASTFLMGLS-SWLVWAEG 113 (197)
Q Consensus 89 ~vF~ivW~ilY~lmg~A-~~lv~~~~ 113 (197)
|-|++ | .+|.+.|++ +|..++++
T Consensus 147 WG~~~-W-aiYal~~lalayf~y~r~ 170 (509)
T 2wsw_A 147 WGPLP-W-ATYSFLSVAFAYFFFVRK 170 (509)
T ss_dssp TSHHH-H-HTTHHHHHHHHHHHHTSC
T ss_pred hChHH-H-HHHHHHHHHHHHHHHHcC
Confidence 44444 6 456788877 46666333
No 10
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=6.12 E-value=1.6e+02 Score=20.73 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=0.0
Q ss_pred hcCCccchhhhhhh
Q 036337 30 IKGGKRNNHQRKMV 43 (197)
Q Consensus 30 ~~~~~~~~~~~~~~ 43 (197)
||++++++|++++.
T Consensus 45 IsYgRkkRr~RRr~ 58 (86)
T 1tac_A 45 ISYGRKKRRQRRRP 58 (86)
T ss_dssp SSSCCCSGGGSCTT
T ss_pred eEeccccccccCCC
Done!