Query 036337
Match_columns 197
No_of_seqs 150 out of 834
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 20:06:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036337.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/036337hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2h8pc1 f.14.1.1 (C:22-78) Pot 23.0 61 0.0044 19.4 4.3 51 141-191 4-54 (57)
2 d1nekd_ f.21.2.2 (D:) Succinat 14.9 52 0.0038 21.8 2.8 21 167-187 14-34 (113)
3 d1jb0i_ f.23.17.1 (I:) Subunit 11.3 85 0.0062 17.2 2.4 17 175-191 12-28 (38)
4 d1v54g_ f.23.2.1 (G:) Mitochon 8.5 2.4E+02 0.018 17.9 4.4 23 47-69 14-37 (84)
5 d1nofa2 c.1.8.3 (A:44-320) Gly 5.2 99 0.0072 23.4 1.0 10 81-90 67-76 (277)
6 d2epqa1 g.37.1.1 (A:380-411) P 5.1 1E+02 0.0074 16.1 0.7 13 33-45 10-22 (32)
7 d1jb0x_ f.23.20.1 (X:) Subunit 5.0 1.9E+02 0.014 14.6 1.8 12 87-98 1-12 (29)
8 d3deoa1 b.34.13.2 (A:85-128) C 5.0 37 0.0027 19.4 -1.3 14 77-90 23-36 (44)
9 d1q90r_ f.23.12.1 (R:) ISP sub 4.1 3.5E+02 0.025 14.7 3.5 12 44-55 7-18 (39)
10 d1c99a_ f.17.1.1 (A:) F1F0 ATP 3.8 3.3E+02 0.024 17.0 2.7 22 145-166 55-76 (79)
No 1
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=23.01 E-value=61 Score=19.35 Aligned_cols=51 Identities=20% Similarity=0.098 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhHHHHHHHHHHHHH
Q 036337 141 HLGAYWAGLVVSTALSGSLVWYCRVVEEVNPIAGDLMKPCVAWAALLSLVN 191 (197)
Q Consensus 141 ~~~~~~lali~il~l~~~~~~~~~~f~~i~~~Ag~Ll~PYl~W~~fAt~LN 191 (197)
+.|.++.+++.++.+......+++..-+-.+....--+|=..|=++.|..+
T Consensus 4 ~~R~~~~~~~~~~i~i~~~s~~~y~~E~~~~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 4 HWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccchhhhhheeeeec
Confidence 456777777666666665555555555544555555678888887777644
No 2
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=14.88 E-value=52 Score=21.84 Aligned_cols=21 Identities=0% Similarity=-0.094 Sum_probs=16.0
Q ss_pred HhhhhhHHHHhhHHHHHHHHH
Q 036337 167 EEVNPIAGDLMKPCVAWAALL 187 (197)
Q Consensus 167 ~~i~~~Ag~Ll~PYl~W~~fA 187 (197)
+-..|..|.+++||..|..+.
T Consensus 14 W~~qRvSAv~l~~l~~~~~~~ 34 (113)
T d1nekd_ 14 FILVRATAIVLTLYIIYMVGF 34 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345578888899999997764
No 3
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=11.27 E-value=85 Score=17.22 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=13.0
Q ss_pred HHhhHHHHHHHHHHHHH
Q 036337 175 DLMKPCVAWAALLSLVN 191 (197)
Q Consensus 175 ~Ll~PYl~W~~fAt~LN 191 (197)
+.++|..+|+..+....
T Consensus 12 wI~iPvv~wl~p~vvMg 28 (38)
T d1jb0i_ 12 WIFIPVVCWLMPTVVMG 28 (38)
T ss_dssp HHHHHHHHTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 45899999998875543
No 4
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.46 E-value=2.4e+02 Score=17.86 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHHH-HHHHH
Q 036337 47 RGLKSLSMAVALPLSLTL-LNIYF 69 (197)
Q Consensus 47 ~~~~~l~~~i~~p~~~g~-~~~~~ 69 (197)
+.|+++..++++|.++-+ +..++
T Consensus 14 ~lWkkis~~va~P~i~l~~~n~~~ 37 (84)
T d1v54g_ 14 RTWRFLTFGLALPSVALCTLNSWL 37 (84)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478888888888877643 44443
No 5
>d1nofa2 c.1.8.3 (A:44-320) Glycosyl hydrolase family 5 xylanase, catalytic domain {Erwinia chrysanthemi [TaxId: 556]}
Probab=5.16 E-value=99 Score=23.40 Aligned_cols=10 Identities=20% Similarity=0.524 Sum_probs=7.6
Q ss_pred CCCCCCCchh
Q 036337 81 KPFWFPSLLV 90 (197)
Q Consensus 81 KP~w~PP~~v 90 (197)
--+|.||.|+
T Consensus 67 ~spWSpP~wM 76 (277)
T d1nofa2 67 ATPWSPPAYM 76 (277)
T ss_dssp EECSCCCGGG
T ss_pred EcCCCCcHHH
Confidence 3569999985
No 6
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.11 E-value=1e+02 Score=16.13 Aligned_cols=13 Identities=23% Similarity=0.353 Sum_probs=9.4
Q ss_pred Cccchhhhhhhhh
Q 036337 33 GKRNNHQRKMVMA 45 (197)
Q Consensus 33 ~~~~~~~~~~~m~ 45 (197)
+.|+||+-+|.--
T Consensus 10 ~qrfkrkdrmsyh 22 (32)
T d2epqa1 10 GLRFKRKDRMSYH 22 (32)
T ss_dssp TEECSCHHHHHHH
T ss_pred HHHhhccccceEe
Confidence 4678888888743
No 7
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=5.01 E-value=1.9e+02 Score=14.57 Aligned_cols=12 Identities=8% Similarity=-0.122 Sum_probs=8.3
Q ss_pred CchhHHHHHHHH
Q 036337 87 SLLVLHTASLAS 98 (197)
Q Consensus 87 P~~vF~ivW~il 98 (197)
|.++|.--|-++
T Consensus 1 pty~frt~wa~l 12 (29)
T d1jb0x_ 1 PTYAFRTFWAVL 12 (29)
T ss_dssp CCCCHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 456777777766
No 8
>d3deoa1 b.34.13.2 (A:85-128) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=4.97 E-value=37 Score=19.45 Aligned_cols=14 Identities=29% Similarity=0.672 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCchh
Q 036337 77 VKQEKPFWFPSLLV 90 (197)
Q Consensus 77 ~~L~KP~w~PP~~v 90 (197)
+.=.-|+|.|++.+
T Consensus 23 kD~h~pSWvP~~~I 36 (44)
T d3deoa1 23 KDGHSPSWVPSSYI 36 (44)
T ss_dssp TTCCCCEEEEGGGS
T ss_pred ccCCCCCcCCHHHH
Confidence 44467899998864
No 9
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.06 E-value=3.5e+02 Score=14.72 Aligned_cols=12 Identities=42% Similarity=0.612 Sum_probs=6.6
Q ss_pred hhhhhhHHHHHH
Q 036337 44 MAKRGLKSLSMA 55 (197)
Q Consensus 44 m~~~~~~~l~~~ 55 (197)
|.||.+..++++
T Consensus 7 MgrR~~MNLll~ 18 (39)
T d1q90r_ 7 MNKRNIMNLILA 18 (39)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 555566555544
No 10
>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]}
Probab=3.84 E-value=3.3e+02 Score=16.95 Aligned_cols=22 Identities=14% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 036337 145 YWAGLVVSTALSGSLVWYCRVV 166 (197)
Q Consensus 145 ~~lali~il~l~~~~~~~~~~f 166 (197)
++.|+++.+.+.+.++.++..|
T Consensus 55 ig~al~Ea~~i~~lvialillF 76 (79)
T d1c99a_ 55 IVMGLVDAIPMIAVGLGLYVMF 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Done!