BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 036338
         (408 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
          An Armadillo Repeat Containing Protein From Arabidopsis
          Thaliana
          Length = 78

 Score = 88.6 bits (218), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 35/69 (50%), Positives = 49/69 (71%)

Query: 11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQ 70
          P +FRCPISL++MK PV + TG TY+R+SIQ+WLD+G+ TCP + + L      PN  L+
Sbjct: 6  PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 65

Query: 71 RLIQIWSDS 79
           LI +W +S
Sbjct: 66 SLIALWCES 74


>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
 pdb|2C2V|T Chain T, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
 pdb|2C2V|U Chain U, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
 pdb|2C2V|V Chain V, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
          Length = 78

 Score = 41.6 bits (96), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 33/64 (51%)

Query: 10 VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTL 69
          +P +    IS ++M+ P    +G+TYDR  I+  L    +  P T   L  ++ +PN  +
Sbjct: 2  IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 61

Query: 70 QRLI 73
          + +I
Sbjct: 62 KEVI 65


>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
 pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
 pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
 pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
          Length = 281

 Score = 41.2 bits (95), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 33/64 (51%)

Query: 10  VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTL 69
           +P +    IS ++M+ P    +G+TYDR  I+  L    +  P T   L  ++ +PN  +
Sbjct: 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 264

Query: 70  QRLI 73
           + +I
Sbjct: 265 KEVI 268


>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
           Hsp70 Interacting Protein
          Length = 179

 Score = 41.2 bits (95), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 32/64 (50%)

Query: 10  VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTL 69
           +P +    IS ++M+ P    +G+TYDR  I+  L    +  P T   L   + +PN  +
Sbjct: 103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAM 162

Query: 70  QRLI 73
           + +I
Sbjct: 163 KEVI 166


>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex
 pdb|2OXQ|D Chain D, Structure Of The Ubch5 :chip U-Box Complex
          Length = 80

 Score = 39.3 bits (90), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%)

Query: 10 VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTL 69
          +P +    IS ++M  P    +G+TYDR  I+  L    +  P T   L   + +PN  +
Sbjct: 10 IPDYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAM 69

Query: 70 QRLI 73
          + +I
Sbjct: 70 KEVI 73


>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
          Finger) Domain Of Tripartite Motif-Containing Protein 5
          Length = 85

 Score = 37.4 bits (85), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 16 CPISLDVMKSPVSLCTGVTYDRASI-----QRWLDSGNNTCPATMQVLQSKEFVPNRTLQ 70
          CPI L+++  P+SL  G ++ +A +     +  LD G ++CP      Q +   PNR + 
Sbjct: 22 CPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVA 81

Query: 71 RLIQ 74
           +++
Sbjct: 82 NIVE 85


>pdb|2KRE|A Chain A, Solution Structure Of E4bUFD2A U-Box Domain
 pdb|3L1X|A Chain A, Crystal Structure Of U-Box Domain Of Human E4b Ubiquitin
          Ligase
 pdb|3L1Z|B Chain B, Crystal Structure Of The U-Box Domain Of Human E4b
          Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
          Conjugating Enzyme
          Length = 100

 Score = 35.8 bits (81), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 7  YITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPN 66
          Y   P  FR P+   +M  PV L +G   DR+ I R L   + T P   Q L      P 
Sbjct: 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHL-LNSPTDPFNRQTLTESMLEPV 81

Query: 67 RTLQRLIQIW 76
            L+  IQ W
Sbjct: 82 PELKEQIQAW 91


>pdb|2KR4|A Chain A, U-Box Domain Of The E3 Ubiquitin Ligase E4b
          Length = 85

 Score = 35.0 bits (79), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 7  YITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPN 66
          Y   P  FR P+   +M  PV L +G   DR+ I R L   + T P   Q+L      P 
Sbjct: 8  YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHL-LNSPTDPFNRQMLTESMLEPV 66

Query: 67 RTLQRLIQIW 76
            L+  IQ W
Sbjct: 67 PELKEQIQAW 76


>pdb|4HVZ|A Chain A, Crystal Structure Of Brucella Abortus Immunogenic Bp26
           Protein
 pdb|4HVZ|B Chain B, Crystal Structure Of Brucella Abortus Immunogenic Bp26
           Protein
 pdb|4HVZ|C Chain C, Crystal Structure Of Brucella Abortus Immunogenic Bp26
           Protein
 pdb|4HVZ|D Chain D, Crystal Structure Of Brucella Abortus Immunogenic Bp26
           Protein
          Length = 224

 Score = 32.3 bits (72), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 323 LSTTKQGRMEICQDAALLNGVVQKMLKTAQEAVSSSN-VLTKILLLMQ 369
           ++ T +G M    D A+LN  V +  KTA+EA++++N  +TK+L  M+
Sbjct: 14  IAVTGEGMMTASPDMAILNLSVLRQAKTAREAMTANNEAMTKVLDAMK 61


>pdb|2H4M|A Chain A, Karyopherin Beta2TRANSPORTIN-M9nls
 pdb|2H4M|B Chain B, Karyopherin Beta2TRANSPORTIN-M9nls
          Length = 865

 Score = 31.2 bits (69), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 339 LLNGVVQKMLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQMS----ADLLKIFRVNYKSC 394
           LL+G+ + +    ++ V+ SN+LT +   MQ    P VRQ S     DL K    + K C
Sbjct: 622 LLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLGDLTKACFQHVKPC 680

Query: 395 LASY 398
           +A +
Sbjct: 681 IADF 684


>pdb|2OT8|A Chain A, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
 pdb|2OT8|B Chain B, Karyopherin Beta2TRANSPORTIN-Hnrnpm Nls Complex
 pdb|4FDD|A Chain A, Crystal Structure Of Kap Beta2-Py-Nls
 pdb|4H1K|A Chain A, Crystal Structure Of Human Kap-Beta2 Bound To The Nls Of
           Saccharomyces Cerevisiae Nab2
          Length = 852

 Score = 31.2 bits (69), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 339 LLNGVVQKMLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQMS----ADLLKIFRVNYKSC 394
           LL+G+ + +    ++ V+ SN+LT +   MQ    P VRQ S     DL K    + K C
Sbjct: 609 LLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLGDLTKACFQHVKPC 667

Query: 395 LASY 398
           +A +
Sbjct: 668 IADF 671


>pdb|2QMR|A Chain A, Karyopherin Beta2TRANSPORTIN
 pdb|2QMR|B Chain B, Karyopherin Beta2TRANSPORTIN
 pdb|2QMR|C Chain C, Karyopherin Beta2TRANSPORTIN
 pdb|2QMR|D Chain D, Karyopherin Beta2TRANSPORTIN
 pdb|2Z5J|A Chain A, Free Transportin 1
 pdb|2Z5K|A Chain A, Complex Of Transportin 1 With Tap Nls
 pdb|2Z5M|A Chain A, Complex Of Transportin 1 With Tap Nls, Crystal Form 2
 pdb|2Z5N|A Chain A, Complex Of Transportin 1 With Hnrnp D Nls
 pdb|2Z5O|A Chain A, Complex Of Transportin 1 With Jktbp Nls
          Length = 890

 Score = 31.2 bits (69), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 339 LLNGVVQKMLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQMS----ADLLKIFRVNYKSC 394
           LL+G+ + +    ++ V+ SN+LT +   MQ    P VRQ S     DL K    + K C
Sbjct: 647 LLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLGDLTKACFQHVKPC 705

Query: 395 LASY 398
           +A +
Sbjct: 706 IADF 709


>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
          Receptor-Associated Factor 6 Protein
          Length = 86

 Score = 31.2 bits (69), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 12 SFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQR 71
          S + CPI L  ++  V    G  + +A I + +    + CP   ++L   +  P+   +R
Sbjct: 24 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKR 83

Query: 72 LI 73
           I
Sbjct: 84 EI 85


>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
          P1 Space Group
 pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The
          C2 Space Group
 pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The
          C2 Space Group
          Length = 118

 Score = 31.2 bits (69), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 12 SFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQR 71
          S + CPI L  ++  V    G  + +A I + +    + CP   ++L   +  P+   +R
Sbjct: 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKR 76

Query: 72 LI 73
           I
Sbjct: 77 EI 78


>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
 pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
          Length = 170

 Score = 30.4 bits (67), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/62 (24%), Positives = 28/62 (45%)

Query: 12 SFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQR 71
          S + CPI L  ++  V    G  + +A I + +    + CP   ++L   +  P+   +R
Sbjct: 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKR 76

Query: 72 LI 73
           I
Sbjct: 77 EI 78


>pdb|2YU4|A Chain A, Solution Structure Of The Sp-Ring Domain In Non-Smc
          Element 2 Homolog (Mms21, S. Cerevisiae)
          Length = 94

 Score = 29.6 bits (65), Expect = 2.8,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 12/91 (13%)

Query: 12 SFFRCPISLDVMKSPV--SLCTGVTYDRASIQRWLDSGNNT-----CP---ATMQVLQSK 61
          S F CPI+ + MK PV   +C G TY+  +I R ++S         CP    +   ++  
Sbjct: 6  SGFTCPITKEEMKKPVKNKVC-GHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64

Query: 62 EFVPNRTLQRLIQIWSDSVQHRVDSSESATG 92
          + + +  L+R I+   +  +HR   S  ++G
Sbjct: 65 DLIQDEALRRAIEN-HNKKRHRHSESGPSSG 94


>pdb|2QIZ|A Chain A, Structure Of The Yeast U-Box-Containing Ubiquitin Ligase
           Ufd2p
          Length = 982

 Score = 29.6 bits (65), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 7   YITVPSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVP 65
           Y  VP  F  P+   +MK PV L  + +  DR++I+  L S ++T P     L+ ++  P
Sbjct: 899 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTP 957

Query: 66  NRTLQRLI 73
           N  L++ I
Sbjct: 958 NEELRQKI 965


>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
          Length = 63

 Score = 29.6 bits (65), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 25/55 (45%)

Query: 12 SFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPN 66
          S + CPI L  ++  V    G  + +A I + +    + CP   ++L   +  P+
Sbjct: 5  SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPD 59


>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
          Finger) Domain Tripartite Motif Protein 30
          Length = 85

 Score = 29.6 bits (65), Expect = 3.6,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)

Query: 16 CPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNT-----CP 52
          CPI L+++K PVS     ++ RA I    +S  NT     CP
Sbjct: 22 CPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCP 63


>pdb|3M62|A Chain A, Crystal Structure Of Ufd2 In Complex With The
           Ubiquitin-Like (Ubl) Domain Of Rad23
 pdb|3M63|A Chain A, Crystal Structure Of Ufd2 In Complex With The
           Ubiquitin-Like (Ubl) Domain Of Dsk2
          Length = 968

 Score = 29.3 bits (64), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 7   YITVPSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVP 65
           Y  VP  F  P+   +MK PV L  + +  DR++I+  L S ++T P     L+ ++  P
Sbjct: 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTP 943

Query: 66  NRTLQRLI 73
           N  L++ I
Sbjct: 944 NEELRQKI 951


>pdb|3NMW|A Chain A, Crytal Structure Of Armadillo Repeats Domain Of Apc
 pdb|3NMW|B Chain B, Crytal Structure Of Armadillo Repeats Domain Of Apc
          Length = 354

 Score = 28.5 bits (62), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 11/89 (12%)

Query: 120 LTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNML------KQVIRVLDLILNK 173
           L+ +   +    ENK  +   DG +  LV  L+  +  N L        ++R +  ++  
Sbjct: 192 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 251

Query: 174 IEDQQHLMNLILKRDQDCLNSLLLVLKQQ 202
            ED + ++     R+ +CL +LL  LK  
Sbjct: 252 NEDHRQIL-----RENNCLQTLLQHLKSH 275


>pdb|3NMX|A Chain A, Crystal Structure Of Apc Complexed With Asef
 pdb|3NMX|B Chain B, Crystal Structure Of Apc Complexed With Asef
 pdb|3NMX|C Chain C, Crystal Structure Of Apc Complexed With Asef
          Length = 354

 Score = 28.5 bits (62), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 17/128 (13%)

Query: 83  RVDSSESATGRPVVLSQDEVKDIIRVA--ISKNEDFSENLTKIVAFAKESDENKTFLAKF 140
           R D +   T R V      VK ++  A  + K       L+ +   +    ENK  +   
Sbjct: 157 RADVNSKKTLREV----GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAV 212

Query: 141 DGLVVMLVEILSNVNDVNML------KQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNS 194
           DG +  LV  L+  +  N L        ++R +  ++   ED + ++     R+ +CL +
Sbjct: 213 DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL-----RENNCLQT 267

Query: 195 LLLVLKQQ 202
           LL  LK  
Sbjct: 268 LLQHLKSH 275


>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
 pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
          Length = 458

 Score = 28.1 bits (61), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 17/128 (13%)

Query: 83  RVDSSESATGRPVVLSQDEVKDIIRVA--ISKNEDFSENLTKIVAFAKESDENKTFLAKF 140
           R D +   T R V      VK ++  A  + K       L+ +   +    ENK  +   
Sbjct: 273 RADVNSKKTLREV----GSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAV 328

Query: 141 DGLVVMLVEILSNVNDVNML------KQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNS 194
           DG +  LV  L+  +  N L        ++R +  ++   ED + ++     R+ +CL +
Sbjct: 329 DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQIL-----RENNCLQT 383

Query: 195 LLLVLKQQ 202
           LL  LK  
Sbjct: 384 LLQHLKSH 391


>pdb|3AU3|A Chain A, Crystal Structure Of Armadillo Repeat Domain Of Apc
          Length = 344

 Score = 28.1 bits (61), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 11/89 (12%)

Query: 120 LTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNML------KQVIRVLDLILNK 173
           L+ +   +    ENK  +   DG +  LV  L+  +  N L        ++R +  ++  
Sbjct: 201 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 260

Query: 174 IEDQQHLMNLILKRDQDCLNSLLLVLKQQ 202
            ED + ++     R+ +CL +LL  LK  
Sbjct: 261 NEDHRQIL-----RENNCLQTLLQHLKSH 284


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.132    0.360 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,178,002
Number of Sequences: 62578
Number of extensions: 305713
Number of successful extensions: 987
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 973
Number of HSP's gapped (non-prelim): 31
length of query: 408
length of database: 14,973,337
effective HSP length: 101
effective length of query: 307
effective length of database: 8,652,959
effective search space: 2656458413
effective search space used: 2656458413
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)