Query 036338
Match_columns 408
No_of_seqs 348 out of 2423
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 11:40:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036338.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/036338hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 99.9 3.1E-24 6.8E-29 239.6 30.0 262 99-390 12-313 (2102)
2 PLN03200 cellulose synthase-in 99.9 1.5E-23 3.3E-28 234.1 29.6 259 99-389 445-764 (2102)
3 KOG0166 Karyopherin (importin) 99.9 3.1E-23 6.8E-28 205.0 22.9 261 99-388 108-393 (514)
4 KOG4224 Armadillo repeat prote 99.9 4E-22 8.6E-27 185.9 16.7 254 101-389 168-446 (550)
5 KOG0166 Karyopherin (importin) 99.9 4.7E-21 1E-25 189.6 23.3 260 102-389 68-351 (514)
6 KOG4224 Armadillo repeat prote 99.9 6.9E-22 1.5E-26 184.3 14.9 257 99-390 84-364 (550)
7 COG5064 SRP1 Karyopherin (impo 99.9 2.9E-21 6.2E-26 178.8 16.7 260 98-389 112-399 (526)
8 PF04564 U-box: U-box domain; 99.9 2.4E-22 5.1E-27 151.0 5.1 72 10-81 1-72 (73)
9 COG5064 SRP1 Karyopherin (impo 99.8 6E-20 1.3E-24 170.1 17.1 264 94-387 151-441 (526)
10 PF05804 KAP: Kinesin-associat 99.8 7.9E-18 1.7E-22 175.1 25.0 261 98-404 121-486 (708)
11 smart00504 Ubox Modified RING 99.8 1E-18 2.2E-23 127.9 5.3 63 13-76 1-63 (63)
12 PF05804 KAP: Kinesin-associat 99.7 5.5E-15 1.2E-19 154.0 25.1 196 119-349 269-464 (708)
13 KOG4199 Uncharacterized conser 99.6 4.7E-13 1E-17 124.5 24.8 261 99-387 144-442 (461)
14 KOG1048 Neural adherens juncti 99.5 3.1E-13 6.7E-18 138.4 17.1 205 98-325 231-452 (717)
15 PF15227 zf-C3HC4_4: zinc fing 99.5 8.7E-15 1.9E-19 97.0 3.3 39 16-54 1-42 (42)
16 PF04826 Arm_2: Armadillo-like 99.5 4.4E-12 9.6E-17 117.9 18.9 195 97-326 9-206 (254)
17 PF04826 Arm_2: Armadillo-like 99.4 3.6E-11 7.8E-16 111.9 19.5 178 137-349 8-186 (254)
18 KOG4199 Uncharacterized conser 99.4 3.1E-10 6.7E-15 106.0 24.2 245 116-389 124-403 (461)
19 PLN03208 E3 ubiquitin-protein 99.4 4.7E-13 1E-17 116.7 4.1 61 7-67 12-87 (193)
20 TIGR00599 rad18 DNA repair pro 99.3 9.1E-13 2E-17 128.4 6.2 73 8-81 21-93 (397)
21 KOG1048 Neural adherens juncti 99.3 8E-11 1.7E-15 120.9 17.6 186 144-346 235-425 (717)
22 KOG2122 Beta-catenin-binding p 99.3 3.8E-11 8.2E-16 128.4 15.3 225 116-370 368-602 (2195)
23 cd00020 ARM Armadillo/beta-cat 99.3 4.6E-11 1E-15 97.9 12.8 114 188-325 5-120 (120)
24 KOG1222 Kinesin associated pro 99.3 3.2E-11 6.9E-16 117.0 13.0 206 158-408 278-505 (791)
25 KOG2122 Beta-catenin-binding p 99.3 1.6E-10 3.5E-15 123.6 19.4 247 116-389 314-601 (2195)
26 PF13923 zf-C3HC4_2: Zinc fing 99.2 8.4E-12 1.8E-16 81.7 2.8 38 16-54 1-39 (39)
27 cd00020 ARM Armadillo/beta-cat 99.2 3.9E-10 8.5E-15 92.4 12.6 118 136-263 2-120 (120)
28 PF10508 Proteasom_PSMB: Prote 99.2 4.6E-08 1E-12 100.6 30.2 236 99-349 76-344 (503)
29 KOG4500 Rho/Rac GTPase guanine 99.1 1E-08 2.2E-13 98.8 21.2 255 102-389 225-519 (604)
30 PF13445 zf-RING_UBOX: RING-ty 99.1 3E-11 6.6E-16 79.9 2.1 36 16-52 1-43 (43)
31 KOG0287 Postreplication repair 99.1 4.9E-11 1.1E-15 110.4 2.8 69 11-80 21-89 (442)
32 PF00097 zf-C3HC4: Zinc finger 99.1 9.5E-11 2.1E-15 77.6 3.1 39 16-54 1-41 (41)
33 PF14835 zf-RING_6: zf-RING of 99.1 6.4E-11 1.4E-15 83.6 2.2 59 12-73 6-65 (65)
34 PF11789 zf-Nse: Zinc-finger o 99.0 9.1E-11 2E-15 82.9 1.8 45 11-55 9-55 (57)
35 PF10508 Proteasom_PSMB: Prote 99.0 2.3E-07 5E-12 95.5 25.6 210 105-349 43-254 (503)
36 KOG0946 ER-Golgi vesicle-tethe 99.0 2E-07 4.4E-12 95.6 23.8 247 99-374 21-330 (970)
37 PF13920 zf-C3HC4_3: Zinc fing 98.9 6E-10 1.3E-14 77.1 3.1 47 12-59 1-48 (50)
38 PRK09687 putative lyase; Provi 98.9 7.4E-08 1.6E-12 91.5 17.9 217 99-385 53-278 (280)
39 KOG2177 Predicted E3 ubiquitin 98.9 6.8E-10 1.5E-14 106.9 3.7 76 3-81 3-78 (386)
40 KOG0320 Predicted E3 ubiquitin 98.9 6.2E-10 1.3E-14 94.6 2.3 53 12-65 130-184 (187)
41 KOG0823 Predicted E3 ubiquitin 98.9 1.1E-09 2.4E-14 97.4 2.7 56 12-67 46-103 (230)
42 PHA02929 N1R/p28-like protein; 98.8 2.2E-09 4.8E-14 97.9 4.0 49 10-59 171-227 (238)
43 cd00162 RING RING-finger (Real 98.8 2.8E-09 6E-14 71.5 3.5 43 15-57 1-44 (45)
44 PF13639 zf-RING_2: Ring finge 98.8 1.4E-09 3E-14 73.2 1.9 40 15-55 2-44 (44)
45 COG5432 RAD18 RING-finger-cont 98.8 1.9E-09 4.1E-14 98.0 3.2 70 11-81 23-92 (391)
46 KOG4500 Rho/Rac GTPase guanine 98.8 6.1E-07 1.3E-11 86.7 19.9 261 99-389 86-431 (604)
47 KOG1222 Kinesin associated pro 98.8 8.4E-08 1.8E-12 93.6 13.2 260 99-372 303-603 (791)
48 PF03224 V-ATPase_H_N: V-ATPas 98.8 1.6E-07 3.6E-12 90.8 15.4 203 104-335 62-281 (312)
49 smart00184 RING Ring finger. E 98.8 7.7E-09 1.7E-13 66.9 3.4 39 16-54 1-39 (39)
50 KOG0317 Predicted E3 ubiquitin 98.7 6.9E-09 1.5E-13 95.0 3.7 52 11-63 237-288 (293)
51 TIGR00570 cdk7 CDK-activating 98.7 2.3E-08 4.9E-13 93.9 5.6 96 12-112 2-112 (309)
52 PF03224 V-ATPase_H_N: V-ATPas 98.7 1.4E-06 3E-11 84.4 18.2 176 101-285 106-293 (312)
53 PF14634 zf-RING_5: zinc-RING 98.6 3.3E-08 7.1E-13 66.3 3.0 41 15-56 1-44 (44)
54 PRK09687 putative lyase; Provi 98.6 3.8E-06 8.3E-11 79.8 17.9 213 101-387 24-248 (280)
55 PHA02926 zinc finger-like prot 98.6 3.4E-08 7.5E-13 87.2 3.3 51 9-59 166-230 (242)
56 cd00256 VATPase_H VATPase_H, r 98.5 4.9E-05 1.1E-09 75.7 24.8 222 99-349 52-287 (429)
57 KOG0311 Predicted E3 ubiquitin 98.5 1.4E-08 3E-13 95.2 -0.4 69 9-77 39-109 (381)
58 KOG4642 Chaperone-dependent E3 98.5 6.6E-08 1.4E-12 86.8 3.8 76 6-81 204-279 (284)
59 KOG0168 Putative ubiquitin fus 98.5 1E-05 2.2E-10 84.1 19.8 234 99-368 166-408 (1051)
60 COG5222 Uncharacterized conser 98.5 1.2E-07 2.6E-12 86.7 4.9 70 14-83 275-346 (427)
61 KOG2160 Armadillo/beta-catenin 98.5 3.7E-05 8E-10 73.4 20.5 166 156-349 96-263 (342)
62 KOG2160 Armadillo/beta-catenin 98.4 3.4E-05 7.3E-10 73.7 19.4 183 112-325 95-282 (342)
63 KOG2660 Locus-specific chromos 98.4 1.2E-07 2.6E-12 88.6 2.1 67 9-76 11-82 (331)
64 KOG2164 Predicted E3 ubiquitin 98.4 1.8E-07 3.9E-12 92.2 3.4 69 13-81 186-262 (513)
65 KOG4646 Uncharacterized conser 98.4 3.2E-06 6.9E-11 69.6 9.5 132 190-349 16-148 (173)
66 KOG0978 E3 ubiquitin ligase in 98.3 1.5E-07 3.3E-12 97.0 1.3 56 10-65 640-695 (698)
67 COG5574 PEX10 RING-finger-cont 98.3 2.5E-07 5.5E-12 83.8 2.4 52 11-62 213-265 (271)
68 KOG0168 Putative ubiquitin fus 98.3 0.00019 4.2E-09 74.9 22.3 215 99-345 210-433 (1051)
69 cd00256 VATPase_H VATPase_H, r 98.3 0.00023 4.9E-09 71.0 21.8 224 142-390 53-309 (429)
70 PRK13800 putative oxidoreducta 98.2 0.00046 1E-08 76.2 25.9 133 101-263 622-771 (897)
71 PF12678 zf-rbx1: RING-H2 zinc 98.2 1.1E-06 2.3E-11 65.8 3.5 40 15-55 21-73 (73)
72 PRK13800 putative oxidoreducta 98.2 0.00017 3.6E-09 79.7 21.2 199 142-387 621-865 (897)
73 KOG0297 TNF receptor-associate 98.1 1.8E-06 3.8E-11 85.8 4.3 68 9-77 17-86 (391)
74 PF05536 Neurochondrin: Neuroc 98.1 0.0003 6.6E-09 72.9 18.8 154 143-326 6-169 (543)
75 KOG2042 Ubiquitin fusion degra 98.0 5.4E-06 1.2E-10 88.2 5.5 74 7-81 864-938 (943)
76 PF00514 Arm: Armadillo/beta-c 98.0 7.7E-06 1.7E-10 53.8 4.3 41 221-263 1-41 (41)
77 KOG0289 mRNA splicing factor [ 98.0 1.3E-05 2.8E-10 77.4 7.5 51 14-65 1-52 (506)
78 KOG4159 Predicted E3 ubiquitin 98.0 3.6E-06 7.8E-11 82.6 3.7 72 7-79 78-154 (398)
79 PF00514 Arm: Armadillo/beta-c 98.0 9.4E-06 2E-10 53.4 4.2 41 264-325 1-41 (41)
80 KOG2171 Karyopherin (importin) 98.0 0.00057 1.2E-08 73.8 19.5 211 100-336 348-559 (1075)
81 KOG0824 Predicted E3 ubiquitin 97.9 4.6E-06 1E-10 77.0 2.0 47 15-61 9-55 (324)
82 KOG4646 Uncharacterized conser 97.9 0.00012 2.6E-09 60.4 10.0 131 142-285 16-147 (173)
83 PF13646 HEAT_2: HEAT repeats; 97.8 0.00012 2.6E-09 56.5 8.4 87 192-321 1-88 (88)
84 KOG0946 ER-Golgi vesicle-tethe 97.8 0.0035 7.6E-08 65.4 20.6 234 101-349 62-326 (970)
85 COG5152 Uncharacterized conser 97.8 1E-05 2.2E-10 70.0 2.0 44 14-58 197-240 (259)
86 KOG1813 Predicted E3 ubiquitin 97.8 1.3E-05 2.7E-10 74.0 2.6 55 14-70 242-296 (313)
87 COG5369 Uncharacterized conser 97.8 0.0014 3E-08 65.6 16.4 240 118-388 408-740 (743)
88 PF05536 Neurochondrin: Neuroc 97.8 0.0017 3.6E-08 67.5 18.0 156 99-266 4-171 (543)
89 KOG1293 Proteins containing ar 97.7 0.0024 5.2E-08 65.3 17.9 120 188-331 417-540 (678)
90 PF12861 zf-Apc11: Anaphase-pr 97.7 3.5E-05 7.6E-10 58.4 3.6 46 14-59 33-82 (85)
91 KOG2973 Uncharacterized conser 97.7 0.0079 1.7E-07 56.6 19.3 256 101-389 4-315 (353)
92 COG5113 UFD2 Ubiquitin fusion 97.7 5.6E-05 1.2E-09 76.2 5.5 75 6-81 847-922 (929)
93 PF01602 Adaptin_N: Adaptin N 97.7 0.0035 7.5E-08 65.0 19.2 210 64-328 53-263 (526)
94 KOG1293 Proteins containing ar 97.6 0.0033 7.2E-08 64.4 17.1 148 116-272 394-543 (678)
95 KOG2171 Karyopherin (importin) 97.6 0.0039 8.5E-08 67.6 18.5 211 144-389 350-569 (1075)
96 KOG3678 SARM protein (with ste 97.6 0.0039 8.5E-08 61.5 16.8 183 132-348 171-357 (832)
97 KOG4628 Predicted E3 ubiquitin 97.6 4.4E-05 9.5E-10 73.2 2.9 46 14-59 230-278 (348)
98 KOG2879 Predicted E3 ubiquitin 97.5 8.3E-05 1.8E-09 67.9 4.0 48 11-58 237-286 (298)
99 PTZ00429 beta-adaptin; Provisi 97.5 0.033 7.3E-07 59.8 24.0 177 99-325 31-208 (746)
100 KOG3039 Uncharacterized conser 97.5 6.8E-05 1.5E-09 67.3 3.1 53 12-65 220-276 (303)
101 PF13646 HEAT_2: HEAT repeats; 97.5 0.00062 1.4E-08 52.3 8.0 88 144-259 1-88 (88)
102 KOG0802 E3 ubiquitin ligase [P 97.5 4.3E-05 9.4E-10 79.4 1.6 44 13-57 291-339 (543)
103 KOG2759 Vacuolar H+-ATPase V1 97.4 0.042 9.2E-07 53.8 21.3 221 99-349 64-300 (442)
104 KOG1002 Nucleotide excision re 97.4 7E-05 1.5E-09 74.0 2.2 51 11-61 534-588 (791)
105 KOG2023 Nuclear transport rece 97.4 0.0072 1.6E-07 62.1 16.2 176 141-346 127-307 (885)
106 KOG0804 Cytoplasmic Zn-finger 97.4 7.7E-05 1.7E-09 72.5 2.0 48 7-57 169-220 (493)
107 PF04641 Rtf2: Rtf2 RING-finge 97.4 0.00014 2.9E-09 68.5 3.6 54 10-65 110-167 (260)
108 PF14664 RICTOR_N: Rapamycin-i 97.4 0.03 6.5E-07 55.4 19.9 165 108-286 33-199 (371)
109 smart00185 ARM Armadillo/beta- 97.3 0.00039 8.4E-09 45.2 4.5 40 222-263 2-41 (41)
110 PF01602 Adaptin_N: Adaptin N 97.3 0.022 4.8E-07 58.9 19.9 235 103-389 45-296 (526)
111 KOG2734 Uncharacterized conser 97.3 0.068 1.5E-06 52.7 20.9 221 99-349 124-372 (536)
112 COG5243 HRD1 HRD ubiquitin lig 97.3 0.00017 3.7E-09 68.5 2.7 47 11-58 285-344 (491)
113 KOG4367 Predicted Zn-finger pr 97.2 0.0001 2.3E-09 71.1 1.1 35 11-45 2-36 (699)
114 smart00185 ARM Armadillo/beta- 97.2 0.00075 1.6E-08 43.8 4.7 40 265-325 2-41 (41)
115 KOG1789 Endocytosis protein RM 97.1 0.034 7.4E-07 60.0 18.2 138 117-264 1743-1884(2235)
116 COG5540 RING-finger-containing 97.1 0.00027 5.9E-09 65.4 2.6 46 15-60 325-373 (374)
117 KOG0826 Predicted E3 ubiquitin 97.1 0.00032 6.9E-09 65.8 3.0 53 6-59 293-346 (357)
118 KOG3039 Uncharacterized conser 97.1 0.00031 6.6E-09 63.2 2.4 36 10-45 40-75 (303)
119 PF13513 HEAT_EZ: HEAT-like re 97.0 0.0013 2.9E-08 46.0 4.9 55 205-261 1-55 (55)
120 KOG3036 Protein involved in ce 97.0 0.024 5.2E-07 51.7 13.9 149 117-272 97-256 (293)
121 KOG2973 Uncharacterized conser 97.0 0.0058 1.3E-07 57.4 9.8 115 193-334 6-120 (353)
122 KOG3678 SARM protein (with ste 97.0 0.013 2.9E-07 57.9 12.6 174 100-285 180-361 (832)
123 PF12348 CLASP_N: CLASP N term 97.0 0.0096 2.1E-07 54.6 11.3 175 116-326 24-207 (228)
124 PF14664 RICTOR_N: Rapamycin-i 97.0 0.048 1E-06 54.0 16.8 229 122-386 6-266 (371)
125 TIGR02270 conserved hypothetic 96.8 0.51 1.1E-05 47.3 23.1 88 144-263 88-176 (410)
126 KOG2979 Protein involved in DN 96.8 0.0012 2.6E-08 60.2 3.5 63 13-75 176-244 (262)
127 KOG2817 Predicted E3 ubiquitin 96.7 0.00092 2E-08 64.6 2.7 43 13-55 334-381 (394)
128 KOG1645 RING-finger-containing 96.7 0.00081 1.8E-08 64.8 1.8 60 13-72 4-69 (463)
129 PF04078 Rcd1: Cell differenti 96.7 0.057 1.2E-06 50.1 13.7 150 117-273 68-228 (262)
130 KOG1734 Predicted RING-contain 96.6 0.0013 2.8E-08 60.1 2.6 50 12-61 223-283 (328)
131 KOG1517 Guanine nucleotide bin 96.6 0.32 7E-06 52.8 20.3 237 116-392 487-735 (1387)
132 PF13513 HEAT_EZ: HEAT-like re 96.6 0.0051 1.1E-07 42.9 4.9 55 248-323 1-55 (55)
133 KOG3113 Uncharacterized conser 96.5 0.0018 3.9E-08 58.6 2.7 52 11-65 109-164 (293)
134 KOG1789 Endocytosis protein RM 96.5 0.043 9.4E-07 59.2 12.9 140 160-325 1742-1883(2235)
135 PTZ00429 beta-adaptin; Provisi 96.4 1.4 3.1E-05 47.6 24.5 179 101-325 106-285 (746)
136 TIGR02270 conserved hypothetic 96.4 0.22 4.8E-06 49.9 17.3 90 142-260 54-143 (410)
137 PF10165 Ric8: Guanine nucleot 96.4 0.26 5.6E-06 50.1 18.1 248 116-389 49-337 (446)
138 PF11841 DUF3361: Domain of un 96.4 0.13 2.8E-06 44.3 13.3 129 181-335 5-143 (160)
139 COG5194 APC11 Component of SCF 96.4 0.0029 6.3E-08 46.8 2.8 44 15-59 33-81 (88)
140 PF11841 DUF3361: Domain of un 96.2 0.084 1.8E-06 45.4 11.1 129 232-381 10-143 (160)
141 PF02891 zf-MIZ: MIZ/SP-RING z 96.2 0.0046 9.9E-08 42.4 2.8 45 13-57 2-50 (50)
142 PF09759 Atx10homo_assoc: Spin 96.1 0.028 6E-07 44.7 7.4 66 251-335 3-70 (102)
143 KOG4185 Predicted E3 ubiquitin 96.1 0.0051 1.1E-07 59.0 3.6 63 14-76 4-77 (296)
144 PF14570 zf-RING_4: RING/Ubox 96.0 0.0056 1.2E-07 41.3 2.4 43 16-58 1-47 (48)
145 KOG2734 Uncharacterized conser 96.0 1.6 3.5E-05 43.4 20.0 210 118-349 103-328 (536)
146 KOG0825 PHD Zn-finger protein 95.9 0.0016 3.4E-08 67.5 -1.0 46 14-60 124-172 (1134)
147 KOG3800 Predicted E3 ubiquitin 95.9 0.0055 1.2E-07 56.8 2.6 46 15-60 2-52 (300)
148 KOG1039 Predicted E3 ubiquitin 95.8 0.0049 1.1E-07 59.6 2.3 48 11-58 159-220 (344)
149 KOG1001 Helicase-like transcri 95.8 0.0019 4.2E-08 68.2 -0.8 46 14-60 455-501 (674)
150 KOG4172 Predicted E3 ubiquitin 95.7 0.0027 5.8E-08 43.4 0.0 44 15-58 9-53 (62)
151 PF12348 CLASP_N: CLASP N term 95.6 0.13 2.8E-06 47.0 10.9 139 116-269 70-212 (228)
152 smart00744 RINGv The RING-vari 95.6 0.013 2.8E-07 40.0 3.0 41 15-55 1-49 (49)
153 COG1413 FOG: HEAT repeat [Ener 95.6 0.31 6.8E-06 47.3 14.1 64 232-325 179-242 (335)
154 COG5096 Vesicle coat complex, 95.5 0.7 1.5E-05 49.4 16.9 167 109-325 28-195 (757)
155 KOG1242 Protein containing ada 95.5 2 4.3E-05 44.3 19.5 185 159-380 270-494 (569)
156 PF11793 FANCL_C: FANCL C-term 95.5 0.0045 9.7E-08 45.8 0.4 47 13-59 2-66 (70)
157 KOG2759 Vacuolar H+-ATPase V1 95.5 1 2.2E-05 44.5 16.4 132 147-286 161-300 (442)
158 KOG0827 Predicted E3 ubiquitin 95.5 0.01 2.2E-07 57.0 2.8 48 13-60 4-57 (465)
159 COG5109 Uncharacterized conser 95.4 0.0094 2E-07 55.7 2.3 44 12-55 335-383 (396)
160 KOG2259 Uncharacterized conser 95.4 0.075 1.6E-06 54.9 8.8 184 102-326 200-440 (823)
161 PF14447 Prok-RING_4: Prokaryo 95.3 0.011 2.4E-07 40.8 1.9 47 13-62 7-53 (55)
162 KOG1059 Vesicle coat complex A 95.2 1.7 3.6E-05 45.8 17.9 187 102-335 183-374 (877)
163 PF05004 IFRD: Interferon-rela 95.2 2.7 5.9E-05 40.6 18.8 193 101-323 44-255 (309)
164 KOG1785 Tyrosine kinase negati 95.2 0.0092 2E-07 57.5 1.6 47 15-61 371-418 (563)
165 KOG1242 Protein containing ada 95.2 1.3 2.8E-05 45.7 16.8 90 192-287 256-345 (569)
166 KOG1517 Guanine nucleotide bin 95.1 0.65 1.4E-05 50.6 15.1 158 99-264 511-672 (1387)
167 PF10165 Ric8: Guanine nucleot 95.1 0.39 8.5E-06 48.8 13.2 121 212-349 2-133 (446)
168 KOG0212 Uncharacterized conser 95.1 0.23 4.9E-06 50.6 10.9 192 99-325 249-444 (675)
169 KOG1493 Anaphase-promoting com 95.0 0.0074 1.6E-07 44.3 0.3 49 11-59 29-81 (84)
170 PF09759 Atx10homo_assoc: Spin 95.0 0.12 2.6E-06 41.1 7.2 66 116-185 3-69 (102)
171 KOG1571 Predicted E3 ubiquitin 94.9 0.016 3.5E-07 55.5 2.3 48 7-58 299-346 (355)
172 COG5369 Uncharacterized conser 94.9 0.19 4.1E-06 50.9 9.7 174 103-285 434-618 (743)
173 KOG1824 TATA-binding protein-i 94.9 1.2 2.6E-05 48.2 16.0 231 104-399 861-1102(1233)
174 PF12755 Vac14_Fab1_bd: Vacuol 94.8 0.24 5.2E-06 39.1 8.5 53 232-287 26-80 (97)
175 COG5627 MMS21 DNA repair prote 94.8 0.017 3.6E-07 51.9 2.1 56 14-69 190-249 (275)
176 KOG1241 Karyopherin (importin) 94.8 0.27 5.9E-06 51.7 10.9 151 142-325 319-477 (859)
177 PF04063 DUF383: Domain of unk 94.8 0.37 7.9E-06 43.1 10.5 121 161-285 13-157 (192)
178 KOG4413 26S proteasome regulat 94.5 2.9 6.3E-05 40.2 16.1 219 99-349 127-355 (524)
179 PF13764 E3_UbLigase_R4: E3 ub 94.4 8.7 0.00019 41.9 21.6 262 100-380 117-429 (802)
180 KOG3161 Predicted E3 ubiquitin 94.3 0.016 3.5E-07 59.0 0.9 62 9-73 7-76 (861)
181 COG5240 SEC21 Vesicle coat com 94.0 8.7 0.00019 39.7 20.4 51 116-172 281-332 (898)
182 KOG4413 26S proteasome regulat 94.0 6.2 0.00013 38.0 19.2 181 116-325 99-286 (524)
183 KOG4692 Predicted E3 ubiquitin 93.8 0.036 7.9E-07 52.7 2.2 46 12-58 421-466 (489)
184 PF14668 RICTOR_V: Rapamycin-i 93.8 0.47 1E-05 35.3 7.6 66 250-335 3-68 (73)
185 PF07814 WAPL: Wings apart-lik 93.8 4.5 9.8E-05 39.9 17.1 229 99-349 20-277 (361)
186 PF02985 HEAT: HEAT repeat; I 93.7 0.1 2.2E-06 31.7 3.4 29 234-263 1-29 (31)
187 KOG2023 Nuclear transport rece 93.6 2.2 4.7E-05 44.6 14.5 176 99-284 127-308 (885)
188 KOG0213 Splicing factor 3b, su 93.6 1.6 3.4E-05 46.2 13.5 172 125-325 724-912 (1172)
189 COG5219 Uncharacterized conser 93.6 0.026 5.6E-07 60.0 0.8 46 13-58 1469-1522(1525)
190 KOG1241 Karyopherin (importin) 93.5 4.3 9.3E-05 43.1 16.6 147 99-263 318-477 (859)
191 PF04063 DUF383: Domain of unk 93.5 0.53 1.1E-05 42.1 8.9 118 208-346 12-155 (192)
192 COG5209 RCD1 Uncharacterized p 93.5 0.58 1.3E-05 42.4 9.0 148 117-272 118-277 (315)
193 PF06025 DUF913: Domain of Unk 93.4 9 0.00019 38.1 22.6 99 189-287 105-208 (379)
194 KOG2611 Neurochondrin/leucine- 93.4 1.1 2.4E-05 45.0 11.7 133 195-346 16-160 (698)
195 COG1413 FOG: HEAT repeat [Ener 93.2 6.2 0.00013 38.2 16.9 78 188-286 178-255 (335)
196 PF11701 UNC45-central: Myosin 93.2 1.6 3.4E-05 37.7 11.2 144 104-260 7-156 (157)
197 COG5175 MOT2 Transcriptional r 93.1 0.063 1.4E-06 50.8 2.4 48 15-62 16-67 (480)
198 KOG1062 Vesicle coat complex A 93.0 8.9 0.00019 41.0 18.0 170 113-333 247-424 (866)
199 KOG0828 Predicted E3 ubiquitin 93.0 0.047 1E-06 54.2 1.5 50 11-60 569-635 (636)
200 PF11698 V-ATPase_H_C: V-ATPas 93.0 0.34 7.3E-06 39.6 6.2 73 189-263 42-115 (119)
201 PF12755 Vac14_Fab1_bd: Vacuol 92.9 0.38 8.1E-06 38.0 6.3 68 190-261 27-94 (97)
202 KOG2999 Regulator of Rac1, req 92.9 3.4 7.4E-05 42.3 14.2 135 193-348 86-223 (713)
203 COG5096 Vesicle coat complex, 92.8 3 6.4E-05 44.8 14.5 103 144-264 94-196 (757)
204 PF08045 CDC14: Cell division 92.8 1.5 3.2E-05 41.0 10.9 98 207-324 107-206 (257)
205 KOG2025 Chromosome condensatio 92.6 16 0.00035 38.8 20.7 91 189-286 84-174 (892)
206 PF12460 MMS19_C: RNAPII trans 92.5 13 0.00028 37.5 19.3 110 191-327 272-396 (415)
207 PF12719 Cnd3: Nuclear condens 92.5 2.9 6.4E-05 40.0 13.2 161 149-345 34-204 (298)
208 KOG3036 Protein involved in ce 91.9 5.6 0.00012 36.7 13.2 108 209-338 97-210 (293)
209 PF02985 HEAT: HEAT repeat; I 91.9 0.31 6.8E-06 29.5 3.7 28 192-220 2-29 (31)
210 KOG0212 Uncharacterized conser 91.6 3.6 7.9E-05 42.2 12.8 196 99-330 207-411 (675)
211 PF12717 Cnd1: non-SMC mitotic 91.5 6.2 0.00013 34.6 13.2 136 116-272 5-148 (178)
212 KOG4275 Predicted E3 ubiquitin 91.4 0.047 1E-06 50.7 -0.5 39 13-58 300-341 (350)
213 PF06371 Drf_GBD: Diaphanous G 91.2 3.2 7E-05 36.4 11.2 113 99-219 65-186 (187)
214 KOG4362 Transcriptional regula 91.1 0.083 1.8E-06 55.2 0.9 66 11-76 19-86 (684)
215 COG5181 HSH155 U2 snRNP splice 91.0 4.9 0.00011 41.8 13.1 92 190-286 604-699 (975)
216 KOG1062 Vesicle coat complex A 91.0 25 0.00055 37.8 19.3 71 193-267 255-327 (866)
217 PF04078 Rcd1: Cell differenti 90.8 11 0.00025 35.1 14.3 196 113-336 8-229 (262)
218 PF11698 V-ATPase_H_C: V-ATPas 90.7 0.61 1.3E-05 38.1 5.4 72 142-219 43-114 (119)
219 PF11701 UNC45-central: Myosin 90.7 3.3 7.1E-05 35.7 10.3 107 193-322 46-156 (157)
220 PF05004 IFRD: Interferon-rela 90.2 11 0.00024 36.4 14.6 148 102-261 88-255 (309)
221 PF08167 RIX1: rRNA processing 90.1 2.2 4.8E-05 37.1 8.8 111 190-325 25-143 (165)
222 PF05290 Baculo_IE-1: Baculovi 89.9 0.29 6.2E-06 40.3 2.8 49 12-60 79-133 (140)
223 KOG2930 SCF ubiquitin ligase, 89.9 0.2 4.3E-06 39.2 1.8 27 30-57 80-106 (114)
224 KOG1940 Zn-finger protein [Gen 89.6 0.2 4.2E-06 47.0 1.8 43 13-56 158-204 (276)
225 KOG1061 Vesicle coat complex A 89.5 13 0.00028 39.6 15.1 177 99-326 12-190 (734)
226 KOG0298 DEAD box-containing he 89.5 0.09 2E-06 58.1 -0.5 46 10-56 1150-1196(1394)
227 PF12717 Cnd1: non-SMC mitotic 89.2 2.6 5.7E-05 37.0 8.7 93 204-326 1-93 (178)
228 PF06025 DUF913: Domain of Unk 89.0 26 0.00056 34.9 19.8 126 142-273 106-243 (379)
229 KOG2114 Vacuolar assembly/sort 88.7 0.23 4.9E-06 52.8 1.8 40 13-56 840-880 (933)
230 KOG0883 Cyclophilin type, U bo 88.6 0.32 7E-06 47.1 2.5 51 13-64 40-90 (518)
231 KOG1991 Nuclear transport rece 88.5 37 0.00079 37.5 17.8 141 116-268 389-537 (1010)
232 PF06371 Drf_GBD: Diaphanous G 88.4 1.9 4.1E-05 37.9 7.3 74 188-262 105-186 (187)
233 PF08324 PUL: PUL domain; Int 88.3 9.4 0.0002 35.7 12.5 168 144-336 65-242 (268)
234 PF13764 E3_UbLigase_R4: E3 ub 88.2 44 0.00096 36.6 20.9 126 137-270 113-265 (802)
235 COG5231 VMA13 Vacuolar H+-ATPa 87.7 18 0.0004 34.8 13.4 131 197-349 156-290 (432)
236 PF08045 CDC14: Cell division 87.7 5.9 0.00013 37.0 10.2 95 116-216 108-203 (257)
237 PF12460 MMS19_C: RNAPII trans 87.7 18 0.00039 36.4 14.7 113 143-265 272-396 (415)
238 KOG0396 Uncharacterized conser 87.7 0.42 9E-06 46.2 2.7 49 12-60 329-380 (389)
239 KOG2259 Uncharacterized conser 87.6 6.2 0.00013 41.4 11.0 87 188-286 371-457 (823)
240 KOG1814 Predicted E3 ubiquitin 87.6 0.58 1.3E-05 45.8 3.6 45 12-56 183-237 (445)
241 KOG0825 PHD Zn-finger protein 87.5 0.44 9.5E-06 50.2 2.9 52 5-56 88-151 (1134)
242 KOG4739 Uncharacterized protei 87.1 0.21 4.5E-06 45.5 0.3 49 24-77 15-64 (233)
243 KOG1060 Vesicle coat complex A 87.0 27 0.00058 37.6 15.4 161 108-325 295-458 (968)
244 KOG1077 Vesicle coat complex A 87.0 46 0.001 35.5 17.6 101 104-221 115-217 (938)
245 PF10367 Vps39_2: Vacuolar sor 86.7 0.28 6E-06 39.2 0.8 34 8-41 73-108 (109)
246 KOG4265 Predicted E3 ubiquitin 86.6 0.4 8.7E-06 46.1 1.9 45 14-59 291-336 (349)
247 COG5220 TFB3 Cdk activating ki 86.4 0.22 4.9E-06 44.9 0.2 47 12-58 9-63 (314)
248 KOG3002 Zn finger protein [Gen 86.4 0.69 1.5E-05 44.2 3.4 59 11-76 46-105 (299)
249 KOG4535 HEAT and armadillo rep 86.4 6.4 0.00014 39.8 10.0 156 142-325 433-603 (728)
250 PF14569 zf-UDP: Zinc-binding 86.3 0.74 1.6E-05 34.2 2.7 46 14-59 10-62 (80)
251 PF05918 API5: Apoptosis inhib 86.2 18 0.00039 37.7 13.7 95 99-216 58-158 (556)
252 KOG1824 TATA-binding protein-i 86.2 17 0.00038 39.8 13.7 173 100-287 568-746 (1233)
253 PF14668 RICTOR_V: Rapamycin-i 86.2 3.4 7.4E-05 30.7 6.3 67 208-275 4-70 (73)
254 PF07191 zinc-ribbons_6: zinc- 85.9 0.094 2E-06 38.3 -2.0 41 13-59 1-41 (70)
255 PF12031 DUF3518: Domain of un 85.9 4.1 8.9E-05 37.5 7.9 80 249-348 139-226 (257)
256 PF12031 DUF3518: Domain of un 85.7 2.8 6.1E-05 38.5 6.8 83 204-286 137-227 (257)
257 PLN02195 cellulose synthase A 85.6 0.72 1.6E-05 50.4 3.4 45 15-59 8-59 (977)
258 KOG1812 Predicted E3 ubiquitin 85.3 0.63 1.4E-05 46.3 2.7 42 13-54 146-196 (384)
259 PF08324 PUL: PUL domain; Int 84.9 17 0.00037 34.0 12.2 172 101-280 64-249 (268)
260 KOG1077 Vesicle coat complex A 84.8 30 0.00066 36.8 14.4 87 190-286 329-415 (938)
261 PLN02189 cellulose synthase 84.8 0.7 1.5E-05 50.8 2.9 46 14-59 35-87 (1040)
262 KOG1248 Uncharacterized conser 84.7 32 0.0007 38.6 15.2 177 116-325 714-898 (1176)
263 KOG4151 Myosin assembly protei 84.6 15 0.00032 39.4 12.3 155 142-324 541-698 (748)
264 KOG4151 Myosin assembly protei 84.2 51 0.0011 35.5 16.0 142 129-285 492-637 (748)
265 KOG1061 Vesicle coat complex A 83.1 26 0.00056 37.5 13.3 169 101-286 122-291 (734)
266 KOG2999 Regulator of Rac1, req 82.7 42 0.00092 34.7 14.1 153 100-261 83-240 (713)
267 KOG0213 Splicing factor 3b, su 82.3 78 0.0017 34.2 17.5 153 100-263 799-954 (1172)
268 KOG1060 Vesicle coat complex A 82.1 47 0.001 35.9 14.6 169 104-325 39-209 (968)
269 KOG2611 Neurochondrin/leucine- 82.1 36 0.00079 34.6 13.2 130 105-243 16-162 (698)
270 PLN02436 cellulose synthase A 82.0 1.1 2.3E-05 49.5 3.0 46 14-59 37-89 (1094)
271 PLN02638 cellulose synthase A 81.7 0.97 2.1E-05 49.9 2.5 46 14-59 18-70 (1079)
272 KOG0567 HEAT repeat-containing 81.6 20 0.00044 33.5 10.6 105 116-261 173-278 (289)
273 PF05605 zf-Di19: Drought indu 81.6 0.67 1.5E-05 32.1 0.9 38 12-56 1-39 (54)
274 PF04641 Rtf2: Rtf2 RING-finge 81.1 1.2 2.7E-05 41.8 2.7 34 13-46 34-68 (260)
275 KOG1943 Beta-tubulin folding c 80.6 62 0.0013 36.2 15.3 192 102-325 343-573 (1133)
276 PF01347 Vitellogenin_N: Lipop 80.4 39 0.00084 35.8 14.2 80 189-287 485-570 (618)
277 KOG0301 Phospholipase A2-activ 80.1 75 0.0016 33.7 15.1 162 116-286 561-727 (745)
278 COG5209 RCD1 Uncharacterized p 79.8 29 0.00063 31.8 10.7 137 209-368 118-260 (315)
279 PF14353 CpXC: CpXC protein 79.5 1 2.2E-05 37.3 1.5 45 13-58 1-48 (128)
280 KOG1820 Microtubule-associated 78.9 65 0.0014 35.4 15.0 180 107-324 260-442 (815)
281 cd03569 VHS_Hrs_Vps27p VHS dom 78.9 8.4 0.00018 32.6 6.9 73 190-264 41-115 (142)
282 PLN02915 cellulose synthase A 78.2 1.4 3.1E-05 48.5 2.4 47 13-59 15-68 (1044)
283 COG3813 Uncharacterized protei 78.2 1.9 4.1E-05 31.4 2.3 36 31-69 27-62 (84)
284 PHA03096 p28-like protein; Pro 77.3 1.4 3E-05 41.9 1.7 43 14-56 179-231 (284)
285 KOG1967 DNA repair/transcripti 77.2 13 0.00027 40.6 8.8 137 142-287 867-1007(1030)
286 KOG3579 Predicted E3 ubiquitin 76.7 1.5 3.3E-05 40.7 1.8 43 11-53 266-316 (352)
287 PF03854 zf-P11: P-11 zinc fin 76.2 0.99 2.2E-05 30.1 0.3 37 23-60 10-47 (50)
288 KOG0301 Phospholipase A2-activ 76.1 70 0.0015 33.9 13.5 134 190-346 589-724 (745)
289 COG5218 YCG1 Chromosome conden 75.9 1.1E+02 0.0024 32.2 16.6 87 189-286 90-180 (885)
290 PF08569 Mo25: Mo25-like; Int 75.9 82 0.0018 30.8 15.6 192 103-326 79-284 (335)
291 PF10571 UPF0547: Uncharacteri 75.8 1.5 3.3E-05 25.5 1.0 22 15-36 2-25 (26)
292 PF14726 RTTN_N: Rotatin, an a 75.7 29 0.00062 27.4 8.5 79 206-285 2-81 (98)
293 KOG1941 Acetylcholine receptor 75.3 1.4 3E-05 42.9 1.2 44 13-56 365-413 (518)
294 PHA02862 5L protein; Provision 75.3 2.9 6.2E-05 35.1 2.9 57 15-78 4-66 (156)
295 PRK14707 hypothetical protein; 75.1 2.1E+02 0.0045 35.0 19.6 216 101-349 164-384 (2710)
296 cd03568 VHS_STAM VHS domain fa 74.8 16 0.00034 31.0 7.4 92 190-286 37-130 (144)
297 PF06416 DUF1076: Protein of u 74.8 3.2 7E-05 33.1 2.9 54 9-63 36-95 (113)
298 KOG1240 Protein kinase contain 74.6 51 0.0011 37.4 12.7 194 102-331 464-691 (1431)
299 KOG1086 Cytosolic sorting prot 74.4 58 0.0013 32.6 11.9 123 101-225 46-207 (594)
300 cd03569 VHS_Hrs_Vps27p VHS dom 74.3 20 0.00044 30.3 8.0 72 99-171 40-113 (142)
301 PHA02825 LAP/PHD finger-like p 74.0 3.4 7.4E-05 35.3 3.1 48 12-60 7-60 (162)
302 PF05918 API5: Apoptosis inhib 73.8 36 0.00078 35.6 11.0 134 99-259 22-158 (556)
303 COG5215 KAP95 Karyopherin (imp 73.4 1.2E+02 0.0027 31.7 15.7 148 99-264 320-480 (858)
304 KOG2062 26S proteasome regulat 73.1 32 0.00069 36.8 10.3 63 191-261 589-651 (929)
305 PF10272 Tmpp129: Putative tra 72.9 2.6 5.5E-05 41.3 2.4 34 29-62 304-354 (358)
306 KOG0915 Uncharacterized conser 72.4 2E+02 0.0043 33.8 16.7 197 116-346 974-1180(1702)
307 smart00638 LPD_N Lipoprotein N 72.3 1E+02 0.0022 32.4 14.5 78 191-287 443-526 (574)
308 PF11791 Aconitase_B_N: Aconit 72.1 21 0.00046 30.4 7.4 100 99-220 21-123 (154)
309 KOG1059 Vesicle coat complex A 71.9 23 0.0005 37.7 9.0 81 193-285 147-228 (877)
310 PF11865 DUF3385: Domain of un 71.7 28 0.00062 30.0 8.5 131 141-287 9-140 (160)
311 PLN02400 cellulose synthase 71.7 2.4 5.1E-05 47.0 2.0 45 15-59 38-89 (1085)
312 cd03561 VHS VHS domain family; 71.6 24 0.00053 29.3 7.8 74 190-265 37-114 (133)
313 PF08569 Mo25: Mo25-like; Int 71.3 86 0.0019 30.6 12.5 144 114-265 137-285 (335)
314 KOG2025 Chromosome condensatio 71.3 1E+02 0.0022 33.1 13.4 110 102-228 87-198 (892)
315 PRK11088 rrmA 23S rRNA methylt 71.2 2.1 4.6E-05 40.3 1.4 26 13-38 2-30 (272)
316 smart00288 VHS Domain present 71.1 28 0.0006 29.0 8.0 72 99-171 36-110 (133)
317 PF11707 Npa1: Ribosome 60S bi 71.1 1E+02 0.0023 29.9 17.7 160 102-267 58-241 (330)
318 PF12719 Cnd3: Nuclear condens 71.0 98 0.0021 29.5 16.0 173 102-287 28-209 (298)
319 PF06844 DUF1244: Protein of u 71.0 2.4 5.1E-05 30.5 1.2 12 35-46 12-23 (68)
320 cd00350 rubredoxin_like Rubred 70.7 2.4 5.3E-05 26.1 1.1 20 31-57 7-26 (33)
321 smart00288 VHS Domain present 70.6 18 0.00039 30.1 6.8 73 190-264 37-112 (133)
322 PF12906 RINGv: RING-variant d 70.6 3.5 7.7E-05 27.7 2.0 39 16-54 1-47 (47)
323 COG5181 HSH155 U2 snRNP splice 70.0 1.5E+02 0.0033 31.3 16.3 177 99-326 687-871 (975)
324 PF08746 zf-RING-like: RING-li 69.7 5.9 0.00013 26.1 2.9 39 16-54 1-43 (43)
325 PF14446 Prok-RING_1: Prokaryo 69.7 4 8.6E-05 28.3 2.1 27 13-39 5-35 (54)
326 COG5116 RPN2 26S proteasome re 69.6 15 0.00032 38.0 6.9 67 190-266 551-618 (926)
327 KOG1058 Vesicle coat complex C 69.6 1.7E+02 0.0037 31.7 16.7 105 143-265 244-348 (948)
328 cd03561 VHS VHS domain family; 69.6 32 0.0007 28.5 8.1 72 99-171 36-111 (133)
329 KOG1967 DNA repair/transcripti 68.9 67 0.0015 35.3 11.8 120 189-330 866-988 (1030)
330 PF09538 FYDLN_acid: Protein o 68.9 3.5 7.5E-05 33.2 2.0 14 12-25 8-21 (108)
331 KOG3665 ZYG-1-like serine/thre 67.9 58 0.0013 35.2 11.5 157 122-285 494-677 (699)
332 PF00790 VHS: VHS domain; Int 67.9 28 0.0006 29.2 7.4 72 99-171 41-117 (140)
333 PF08167 RIX1: rRNA processing 67.4 37 0.0008 29.4 8.3 71 233-325 25-97 (165)
334 cd03568 VHS_STAM VHS domain fa 65.9 40 0.00087 28.6 8.0 72 99-171 36-109 (144)
335 COG5215 KAP95 Karyopherin (imp 65.5 40 0.00087 35.1 9.0 114 191-325 598-711 (858)
336 COG5236 Uncharacterized conser 65.4 4.4 9.5E-05 38.9 2.2 47 11-57 59-106 (493)
337 KOG2137 Protein kinase [Signal 65.2 1.3E+02 0.0027 32.3 12.8 131 142-286 389-519 (700)
338 COG4530 Uncharacterized protei 65.0 5.6 0.00012 31.6 2.4 34 9-42 5-43 (129)
339 KOG0883 Cyclophilin type, U bo 64.9 3.3 7.2E-05 40.4 1.3 53 11-63 99-156 (518)
340 KOG1020 Sister chromatid cohes 64.7 1.3E+02 0.0029 35.1 13.5 151 134-324 808-959 (1692)
341 KOG4535 HEAT and armadillo rep 64.5 16 0.00034 37.1 5.8 101 157-263 498-603 (728)
342 KOG0314 Predicted E3 ubiquitin 64.4 3.7 8E-05 41.2 1.6 70 9-80 215-288 (448)
343 KOG4718 Non-SMC (structural ma 64.2 4.2 9.1E-05 36.4 1.7 45 14-59 182-227 (235)
344 PF10363 DUF2435: Protein of u 63.2 32 0.0007 26.7 6.4 82 194-286 7-88 (92)
345 KOG0414 Chromosome condensatio 63.2 80 0.0017 35.7 11.3 130 113-265 936-1066(1251)
346 KOG2062 26S proteasome regulat 63.1 19 0.00041 38.4 6.4 15 100-114 413-427 (929)
347 KOG3268 Predicted E3 ubiquitin 63.0 5.2 0.00011 34.7 2.0 45 15-59 167-228 (234)
348 COG5240 SEC21 Vesicle coat com 63.0 1.2E+02 0.0026 31.8 11.8 77 204-285 500-579 (898)
349 PF05883 Baculo_RING: Baculovi 62.9 3.6 7.8E-05 34.2 1.0 43 13-56 26-77 (134)
350 KOG3899 Uncharacterized conser 62.7 3.9 8.5E-05 38.3 1.3 28 35-62 329-368 (381)
351 PF14205 Cys_rich_KTR: Cystein 62.6 5.6 0.00012 27.5 1.7 9 49-57 29-37 (55)
352 PF06906 DUF1272: Protein of u 62.5 7.6 0.00017 27.0 2.3 26 33-61 29-54 (57)
353 cd03567 VHS_GGA VHS domain fam 62.4 37 0.0008 28.6 7.1 72 190-263 38-116 (139)
354 PRK14707 hypothetical protein; 62.4 3.7E+02 0.0081 33.0 21.1 218 99-349 204-426 (2710)
355 KOG2274 Predicted importin 9 [ 62.4 1.4E+02 0.0031 32.9 12.7 161 204-389 504-689 (1005)
356 smart00531 TFIIE Transcription 62.1 4.7 0.0001 34.3 1.6 14 47-60 122-135 (147)
357 KOG0414 Chromosome condensatio 61.3 54 0.0012 37.0 9.7 141 143-324 920-1063(1251)
358 TIGR02300 FYDLN_acid conserved 61.2 5.4 0.00012 32.8 1.7 16 10-25 6-21 (129)
359 KOG4653 Uncharacterized conser 60.9 2.6E+02 0.0057 30.8 17.7 161 99-266 726-921 (982)
360 COG5231 VMA13 Vacuolar H+-ATPa 60.5 54 0.0012 31.7 8.4 120 161-286 167-290 (432)
361 KOG1991 Nuclear transport rece 59.8 2.9E+02 0.0063 30.9 17.0 133 189-349 409-554 (1010)
362 KOG1815 Predicted E3 ubiquitin 59.2 6.4 0.00014 40.1 2.3 36 11-46 68-104 (444)
363 PRK14559 putative protein seri 59.2 7.9 0.00017 41.2 3.0 8 50-57 43-50 (645)
364 PF07814 WAPL: Wings apart-lik 58.4 60 0.0013 32.1 8.9 93 192-285 23-116 (361)
365 cd00729 rubredoxin_SM Rubredox 58.0 5.8 0.00012 24.7 1.1 9 49-57 19-27 (34)
366 KOG2137 Protein kinase [Signal 57.7 2.2E+02 0.0047 30.6 13.0 132 189-349 388-519 (700)
367 KOG2933 Uncharacterized conser 57.2 59 0.0013 31.3 8.0 109 193-326 91-200 (334)
368 cd03567 VHS_GGA VHS domain fam 57.1 76 0.0016 26.7 8.1 72 99-171 37-115 (139)
369 PF10497 zf-4CXXC_R1: Zinc-fin 56.9 10 0.00022 30.3 2.7 43 14-56 8-69 (105)
370 KOG4231 Intracellular membrane 56.7 15 0.00032 37.5 4.1 70 235-325 329-399 (763)
371 PF00790 VHS: VHS domain; Int 54.8 1.3E+02 0.0027 25.2 11.5 73 144-221 44-119 (140)
372 COG4306 Uncharacterized protei 54.6 70 0.0015 26.2 6.9 87 34-133 29-120 (160)
373 PF00096 zf-C2H2: Zinc finger, 54.5 4 8.6E-05 22.4 -0.1 13 14-26 1-13 (23)
374 PF09986 DUF2225: Uncharacteri 54.3 10 0.00022 34.5 2.5 53 11-63 3-63 (214)
375 PF04564 U-box: U-box domain; 53.3 9 0.00019 28.3 1.7 44 49-92 5-50 (73)
376 COG3492 Uncharacterized protei 52.7 6.3 0.00014 30.1 0.7 13 34-46 42-54 (104)
377 PF14500 MMS19_N: Dos2-interac 52.4 1.8E+02 0.0038 27.3 10.6 144 108-266 7-156 (262)
378 PF14225 MOR2-PAG1_C: Cell mor 52.1 2.1E+02 0.0045 26.9 13.8 133 101-261 112-252 (262)
379 cd00730 rubredoxin Rubredoxin; 51.2 6.4 0.00014 26.9 0.5 14 8-21 29-42 (50)
380 PF06676 DUF1178: Protein of u 51.2 14 0.00031 31.4 2.7 23 30-57 9-41 (148)
381 KOG0567 HEAT repeat-containing 51.0 2.2E+02 0.0048 26.9 16.1 29 142-170 67-96 (289)
382 PF11791 Aconitase_B_N: Aconit 49.7 57 0.0012 27.9 6.0 50 205-266 77-126 (154)
383 PF14663 RasGEF_N_2: Rapamycin 48.5 49 0.0011 26.8 5.4 40 234-274 9-48 (115)
384 PF10915 DUF2709: Protein of u 47.8 15 0.00032 32.4 2.3 37 12-57 86-122 (238)
385 KOG1058 Vesicle coat complex C 47.8 4.1E+02 0.0088 29.0 15.7 63 101-169 135-198 (948)
386 PF00301 Rubredoxin: Rubredoxi 47.6 7.9 0.00017 26.1 0.5 15 7-21 28-42 (47)
387 PRK06266 transcription initiat 47.5 17 0.00038 32.0 2.8 52 11-78 115-167 (178)
388 PF12830 Nipped-B_C: Sister ch 47.5 2E+02 0.0043 25.3 10.6 152 144-326 10-168 (187)
389 KOG2462 C2H2-type Zn-finger pr 47.4 9.6 0.00021 35.6 1.2 50 11-60 159-227 (279)
390 PF07800 DUF1644: Protein of u 47.2 8.9 0.00019 32.8 0.9 21 12-32 1-21 (162)
391 PF12530 DUF3730: Protein of u 47.1 2.3E+02 0.005 25.9 12.3 138 145-324 3-150 (234)
392 COG5116 RPN2 26S proteasome re 46.9 51 0.0011 34.4 6.2 46 232-286 550-596 (926)
393 KOG2932 E3 ubiquitin ligase in 46.8 8.8 0.00019 36.4 0.9 43 13-58 90-133 (389)
394 PRK04023 DNA polymerase II lar 46.7 18 0.00038 40.1 3.2 46 12-60 625-675 (1121)
395 KOG3970 Predicted E3 ubiquitin 46.6 37 0.00081 30.7 4.7 61 14-74 51-123 (299)
396 KOG1020 Sister chromatid cohes 46.4 3.3E+02 0.0071 32.1 12.8 139 102-261 818-958 (1692)
397 PF14726 RTTN_N: Rotatin, an a 46.2 1.5E+02 0.0031 23.4 8.3 89 116-212 4-92 (98)
398 PF09723 Zn-ribbon_8: Zinc rib 45.4 5.2 0.00011 26.1 -0.6 25 30-56 10-34 (42)
399 KOG4185 Predicted E3 ubiquitin 45.0 3.7 7.9E-05 39.3 -2.0 44 14-57 208-265 (296)
400 KOG0915 Uncharacterized conser 44.7 1.6E+02 0.0036 34.4 10.2 132 188-349 954-1088(1702)
401 PF06012 DUF908: Domain of Unk 44.2 1.1E+02 0.0024 29.7 8.2 77 206-282 237-323 (329)
402 PF03130 HEAT_PBS: PBS lyase H 44.2 21 0.00045 20.7 1.9 26 250-285 1-26 (27)
403 PF08216 CTNNBL: Catenin-beta- 44.2 57 0.0012 26.2 5.0 39 249-287 61-99 (108)
404 TIGR02605 CxxC_CxxC_SSSS putat 43.8 7.9 0.00017 26.3 0.1 25 30-56 10-34 (52)
405 PLN03086 PRLI-interacting fact 43.1 25 0.00055 36.7 3.6 51 9-59 449-515 (567)
406 PF13894 zf-C2H2_4: C2H2-type 42.5 8.6 0.00019 20.8 0.1 11 15-25 2-12 (24)
407 PRK07758 hypothetical protein; 41.8 20 0.00044 27.9 2.0 31 30-67 11-42 (95)
408 KOG1240 Protein kinase contain 41.8 6.1E+02 0.013 29.4 17.2 109 145-263 425-537 (1431)
409 COG5330 Uncharacterized protei 41.4 3.6E+02 0.0078 26.6 13.3 81 192-277 9-90 (364)
410 TIGR01206 lysW lysine biosynth 41.2 14 0.0003 25.7 1.0 12 13-24 2-13 (54)
411 KOG1788 Uncharacterized conser 41.0 6.1E+02 0.013 29.1 15.8 203 99-325 719-982 (2799)
412 COG2176 PolC DNA polymerase II 40.9 26 0.00055 39.6 3.3 41 8-60 909-951 (1444)
413 TIGR00373 conserved hypothetic 40.9 31 0.00067 29.7 3.3 15 47-61 127-141 (158)
414 smart00834 CxxC_CXXC_SSSS Puta 40.7 8.6 0.00019 24.5 -0.1 11 48-58 26-36 (41)
415 COG1675 TFA1 Transcription ini 40.0 35 0.00077 29.9 3.5 52 11-78 111-163 (176)
416 KOG2462 C2H2-type Zn-finger pr 40.0 22 0.00047 33.4 2.3 46 14-59 188-254 (279)
417 PF04499 SAPS: SIT4 phosphatas 39.9 3.3E+02 0.0072 28.0 11.1 79 131-219 10-91 (475)
418 PF14311 DUF4379: Domain of un 39.7 19 0.00041 24.9 1.5 23 30-54 33-55 (55)
419 KOG2032 Uncharacterized conser 39.6 4E+02 0.0087 27.4 11.1 155 100-264 258-417 (533)
420 KOG2034 Vacuolar sorting prote 39.4 12 0.00026 40.5 0.6 35 11-45 815-851 (911)
421 KOG2274 Predicted importin 9 [ 39.1 5.9E+02 0.013 28.4 18.0 156 141-325 529-689 (1005)
422 PRK11595 DNA utilization prote 38.7 23 0.00049 32.5 2.3 39 15-59 7-45 (227)
423 KOG0211 Protein phosphatase 2A 38.4 5.7E+02 0.012 28.1 13.5 99 199-325 527-625 (759)
424 PF12773 DZR: Double zinc ribb 38.3 27 0.00059 23.3 2.1 11 49-59 30-40 (50)
425 PF13251 DUF4042: Domain of un 38.2 2.8E+02 0.0061 24.5 10.0 73 234-326 102-175 (182)
426 PF06685 DUF1186: Protein of u 38.2 3.4E+02 0.0073 25.3 10.4 81 188-273 71-153 (249)
427 PF08506 Cse1: Cse1; InterPro 37.9 4.1E+02 0.009 26.3 12.1 136 108-258 218-370 (370)
428 KOG1248 Uncharacterized conser 37.8 6.8E+02 0.015 28.7 18.6 195 116-346 671-877 (1176)
429 PRK14892 putative transcriptio 37.7 20 0.00042 28.4 1.4 37 8-58 16-52 (99)
430 PF08389 Xpo1: Exportin 1-like 37.3 2.3E+02 0.0049 23.1 8.2 110 141-258 25-148 (148)
431 PF14225 MOR2-PAG1_C: Cell mor 36.7 3.6E+02 0.0079 25.3 13.8 52 233-286 188-239 (262)
432 PF10363 DUF2435: Protein of u 36.7 1.2E+02 0.0027 23.4 5.8 68 235-325 5-72 (92)
433 COG1592 Rubrerythrin [Energy p 36.3 19 0.00041 31.3 1.2 19 31-57 140-158 (166)
434 PF04499 SAPS: SIT4 phosphatas 36.0 1.9E+02 0.0041 29.8 8.6 72 317-389 10-92 (475)
435 KOG1820 Microtubule-associated 35.9 6.5E+02 0.014 27.9 14.8 127 116-263 312-443 (815)
436 PF10083 DUF2321: Uncharacteri 35.4 47 0.001 28.4 3.4 25 33-61 28-52 (158)
437 PHA00626 hypothetical protein 35.0 32 0.00069 24.0 1.9 13 48-60 23-35 (59)
438 COG5218 YCG1 Chromosome conden 34.7 2.9E+02 0.0062 29.3 9.4 113 100-228 91-204 (885)
439 PF12874 zf-met: Zinc-finger o 34.3 13 0.00028 20.8 -0.1 15 14-28 1-15 (25)
440 PF04388 Hamartin: Hamartin pr 33.8 6.4E+02 0.014 27.3 13.0 159 100-287 4-164 (668)
441 PF09162 Tap-RNA_bind: Tap, RN 33.8 23 0.0005 27.3 1.2 25 27-54 10-34 (88)
442 PF02146 SIR2: Sir2 family; I 33.7 63 0.0014 28.1 4.2 44 30-74 110-159 (178)
443 smart00734 ZnF_Rad18 Rad18-lik 33.6 19 0.00041 20.8 0.6 8 51-58 4-11 (26)
444 smart00132 LIM Zinc-binding do 33.6 36 0.00079 20.7 2.0 35 15-58 1-37 (39)
445 KOG2933 Uncharacterized conser 33.4 4.5E+02 0.0098 25.4 13.2 142 99-261 87-232 (334)
446 COG5098 Chromosome condensatio 33.3 2.2E+02 0.0048 30.7 8.4 70 190-263 346-415 (1128)
447 PF08271 TF_Zn_Ribbon: TFIIB z 33.3 7.3 0.00016 25.5 -1.4 18 47-64 18-35 (43)
448 smart00638 LPD_N Lipoprotein N 33.3 4.2E+02 0.0091 27.7 11.1 50 204-261 493-543 (574)
449 KOG1943 Beta-tubulin folding c 33.2 2.8E+02 0.0061 31.3 9.6 117 190-325 341-457 (1133)
450 PF10521 DUF2454: Protein of u 32.6 1.6E+02 0.0034 27.9 7.0 73 190-263 119-203 (282)
451 PRK00420 hypothetical protein; 32.5 20 0.00044 28.9 0.8 12 47-58 39-50 (112)
452 PF04423 Rad50_zn_hook: Rad50 32.2 18 0.00039 24.9 0.4 11 50-60 22-32 (54)
453 PF12171 zf-C2H2_jaz: Zinc-fin 32.2 27 0.00058 20.0 1.1 14 14-27 2-15 (27)
454 PF09845 DUF2072: Zn-ribbon co 31.5 26 0.00057 29.0 1.3 23 29-56 5-27 (131)
455 KOG0309 Conserved WD40 repeat- 31.5 27 0.00059 37.3 1.7 43 13-56 1028-1073(1081)
456 PF07923 N1221: N1221-like pro 31.4 95 0.0021 29.6 5.3 54 232-286 59-127 (293)
457 KOG2272 Focal adhesion protein 31.1 27 0.00059 32.1 1.5 53 6-58 176-231 (332)
458 PF15616 TerY-C: TerY-C metal 31.0 26 0.00056 29.2 1.2 39 13-58 77-115 (131)
459 PF11707 Npa1: Ribosome 60S bi 31.0 5E+02 0.011 25.1 18.2 166 144-331 58-243 (330)
460 KOG2956 CLIP-associating prote 30.9 6E+02 0.013 26.1 14.2 59 204-263 419-477 (516)
461 PF00412 LIM: LIM domain; Int 30.8 42 0.0009 22.9 2.1 31 12-42 25-56 (58)
462 KOG1078 Vesicle coat complex C 30.7 5.1E+02 0.011 28.3 10.7 136 102-261 393-530 (865)
463 KOG2807 RNA polymerase II tran 30.6 13 0.00029 35.5 -0.6 35 26-60 323-357 (378)
464 PF10235 Cript: Microtubule-as 30.4 34 0.00074 26.5 1.7 37 14-60 45-81 (90)
465 KOG4653 Uncharacterized conser 30.3 7.1E+02 0.015 27.7 11.7 65 196-263 733-797 (982)
466 KOG3993 Transcription factor ( 30.2 9.3 0.0002 37.8 -1.8 42 11-59 265-306 (500)
467 smart00567 EZ_HEAT E-Z type HE 30.1 75 0.0016 18.4 2.9 28 206-244 2-29 (30)
468 PRK05978 hypothetical protein; 30.1 33 0.00071 29.2 1.7 10 49-58 53-62 (148)
469 PF11290 DUF3090: Protein of u 30.1 45 0.00097 29.1 2.5 18 44-61 150-167 (171)
470 PF08273 Prim_Zn_Ribbon: Zinc- 29.9 31 0.00067 22.4 1.1 23 15-39 5-32 (40)
471 PRK14714 DNA polymerase II lar 29.8 46 0.001 37.9 3.2 64 13-76 667-740 (1337)
472 TIGR03847 conserved hypothetic 29.5 46 0.001 29.0 2.5 18 43-60 151-168 (177)
473 PRK00398 rpoP DNA-directed RNA 29.5 20 0.00044 23.7 0.3 11 49-59 22-32 (46)
474 COG0068 HypF Hydrogenase matur 29.1 27 0.00058 37.2 1.2 48 10-57 98-182 (750)
475 PF07923 N1221: N1221-like pro 28.8 1.3E+02 0.0029 28.6 5.9 54 99-153 59-127 (293)
476 KOG4231 Intracellular membrane 28.6 97 0.0021 31.9 4.9 61 202-263 339-399 (763)
477 PF01347 Vitellogenin_N: Lipop 28.5 7.2E+02 0.016 26.2 12.7 182 99-325 346-553 (618)
478 PF04216 FdhE: Protein involve 28.4 11 0.00024 36.0 -1.6 44 13-57 172-220 (290)
479 PF11781 RRN7: RNA polymerase 28.3 31 0.00067 21.7 0.9 23 14-39 9-31 (36)
480 COG3364 Zn-ribbon containing p 28.2 31 0.00066 27.2 1.1 24 29-57 6-29 (112)
481 cd01413 SIR2_Af2 SIR2_Af2: Arc 27.9 95 0.0021 28.3 4.5 31 30-60 118-148 (222)
482 COG4098 comFA Superfamily II D 27.6 23 0.0005 34.5 0.4 31 11-41 37-68 (441)
483 PF08216 CTNNBL: Catenin-beta- 27.1 87 0.0019 25.2 3.5 37 117-155 64-100 (108)
484 KOG0211 Protein phosphatase 2A 26.9 5E+02 0.011 28.5 10.2 168 99-285 235-408 (759)
485 KOG2169 Zn-finger transcriptio 26.9 69 0.0015 34.3 3.8 65 9-74 302-371 (636)
486 PHA00733 hypothetical protein 26.9 76 0.0017 26.3 3.3 18 12-29 39-56 (128)
487 PF07282 OrfB_Zn_ribbon: Putat 26.8 31 0.00066 24.9 0.9 12 14-25 29-40 (69)
488 KOG2152 Sister chromatid cohes 26.7 8.5E+02 0.018 26.6 11.4 220 99-341 331-560 (865)
489 COG3809 Uncharacterized protei 26.4 15 0.00032 27.4 -0.9 14 14-27 2-15 (88)
490 KOG3665 ZYG-1-like serine/thre 26.1 7.1E+02 0.015 27.1 11.3 153 166-345 494-674 (699)
491 KOG4464 Signaling protein RIC- 25.9 7E+02 0.015 25.2 11.3 137 194-347 49-196 (532)
492 PF13834 DUF4193: Domain of un 25.9 26 0.00056 27.5 0.3 29 11-39 68-98 (99)
493 PF12397 U3snoRNP10: U3 small 25.5 2.9E+02 0.0062 22.1 6.6 69 191-265 7-76 (121)
494 PF14663 RasGEF_N_2: Rapamycin 25.4 2E+02 0.0044 23.2 5.5 39 191-230 9-47 (115)
495 COG5098 Chromosome condensatio 25.2 7.5E+02 0.016 27.0 10.6 120 142-263 240-375 (1128)
496 cd01407 SIR2-fam SIR2 family o 25.1 1.3E+02 0.0027 27.3 4.8 31 30-60 114-145 (218)
497 TIGR01562 FdhE formate dehydro 25.0 23 0.00049 34.1 -0.2 44 13-57 184-233 (305)
498 PF13811 DUF4186: Domain of un 24.7 36 0.00079 27.2 1.0 21 25-45 64-86 (111)
499 PRK14559 putative protein seri 24.5 52 0.0011 35.2 2.4 37 15-60 3-39 (645)
500 KOG1087 Cytosolic sorting prot 24.4 2.3E+02 0.0051 29.0 6.9 69 99-168 37-108 (470)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.93 E-value=3.1e-24 Score=239.61 Aligned_cols=262 Identities=15% Similarity=0.180 Sum_probs=220.3
Q ss_pred HHHHHHHHHHHhcC--Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhccccc
Q 036338 99 QDEVKDIIRVAISK--NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIE 175 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~--~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~ 175 (408)
...+..+++.|+++ +.+ +..|+..|+.++++++++|..|.+..|+||.|+.+|.+++ ..++++|+.+|.+|+. +
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~-~~vk~nAaaaL~nLS~--~ 88 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGT-LGAKVNAAAVLGVLCK--E 88 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhc--C
Confidence 67899999999977 556 8999999999999999999999975599999999999876 3345999999999997 5
Q ss_pred chHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC---cchhhHHhhhcChHHHHHHhcccCC--CHHH
Q 036338 176 DQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD---ADSKVKIAERDGLLAETVKSLSLDS--DRRL 250 (408)
Q Consensus 176 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~---~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~ 250 (408)
+++ +..|. ..|+|++|+++|++| +.+.|++|+++|++|+.+ ++++..|+...|+||+|+.+|+++. +..+
T Consensus 89 e~n--k~~Iv--~~GaIppLV~LL~sG-s~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L 163 (2102)
T PLN03200 89 EDL--RVKVL--LGGCIPPLLSLLKSG-SAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVV 163 (2102)
T ss_pred HHH--HHHHH--HcCChHHHHHHHHCC-CHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHH
Confidence 444 67777 799999999999999 999999999999999987 4456566655899999999999862 2235
Q ss_pred HHHHHHHHHHhccCcchHHH-HHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC-HH
Q 036338 251 IEASLSCLITISSSKRAKTK-LINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT-KQ 328 (408)
Q Consensus 251 ~~~A~~aL~~Ls~~~~n~~~-~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~ 328 (408)
++.|+.+|+|||.+.+|+.. ++++|+||.|+.+|+++ ++..++.|+.+|.+++.+ ++
T Consensus 164 ~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~---------------------d~~lQ~eAa~aLa~Lass~ee 222 (2102)
T PLN03200 164 EGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSG---------------------NSDAQANAASLLARLMMAFES 222 (2102)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCC---------------------CHHHHHHHHHHHHHHHcCChH
Confidence 67788999999999998865 46999999999999864 789999999999888864 77
Q ss_pred HHHHHHhhcCchHHHHHHHHH----------------------HHHHHHHhcCcHHHHHHHHhhcC--------CHHHHH
Q 036338 329 GRMEICQDAALLNGVVQKMLK----------------------TAQEAVSSSNVLTKILLLMQSNC--------TPAVRQ 378 (408)
Q Consensus 329 ~~~~~~~~~g~i~~lv~~l~~----------------------~~~~~~~~~g~~~~Ll~ll~~~~--------~~~~k~ 378 (408)
.+..+++ +|+||.||++|.+ +.++.+++.||++.|+.++.+.. +...++
T Consensus 223 ~~~aVIe-aGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe 301 (2102)
T PLN03200 223 SISKVLD-AGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQE 301 (2102)
T ss_pred HHHHHHH-CCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHH
Confidence 8888887 5999999997633 57778899999999999997432 244588
Q ss_pred HHHHHHHHHhhc
Q 036338 379 MSADLLKIFRVN 390 (408)
Q Consensus 379 ~A~~lL~~l~~~ 390 (408)
.|.++|..+..+
T Consensus 302 ~AvwALsNIcgg 313 (2102)
T PLN03200 302 NAMGALANICGG 313 (2102)
T ss_pred HHHHHHHHHhCC
Confidence 888888887763
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.93 E-value=1.5e-23 Score=234.14 Aligned_cols=259 Identities=15% Similarity=0.167 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
.+.++.|++.|++++.. |..|++.|++++.++++++..|++. |+||+|+++|.+++ .+++++|+++|.||+. +++
T Consensus 445 ~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIiea-GaIP~LV~LL~s~~-~~iqeeAawAL~NLa~--~~~ 520 (2102)
T PLN03200 445 REGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAA-GGIPPLVQLLETGS-QKAKEDSATVLWNLCC--HSE 520 (2102)
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHcCCC-HHHHHHHHHHHHHHhC--CcH
Confidence 34688999999998877 9999999999999999999999999 99999999999876 3455999999999997 444
Q ss_pred HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchh--------------------------------
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSK-------------------------------- 225 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~-------------------------------- 225 (408)
+ .+..|. ++|+|++|+++|+++ +.+.|..|+++|.+|+.+.+..
T Consensus 521 q-ir~iV~--~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~ 596 (2102)
T PLN03200 521 D-IRACVE--SAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVAS 596 (2102)
T ss_pred H-HHHHHH--HCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Confidence 4 367776 789999999999999 9999999999999997433221
Q ss_pred -----hHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCc-chHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCC
Q 036338 226 -----VKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSK-RAKTKLINHKLITELGKLITDGHNGNGSGNGNGN 299 (408)
Q Consensus 226 -----~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~-~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~ 299 (408)
.......|+++.|+++|+++ +...++.|+++|.+++.+. +++..++.+|+||+|+.+|++.
T Consensus 597 ~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~------------ 663 (2102)
T PLN03200 597 LEDLVREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN------------ 663 (2102)
T ss_pred hhHHHHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC------------
Confidence 11112368999999999998 8899999999999998854 5678888999999999999863
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHhC--CHHHHHHHHhhcCchHHHHHHHHH--------------------HHHHHHHh
Q 036338 300 GNGNGSGNGTVLITEKALRLVEILST--TKQGRMEICQDAALLNGVVQKMLK--------------------TAQEAVSS 357 (408)
Q Consensus 300 ~~~~~~~~~~~~~~~~a~~~L~~L~~--~~~~~~~~~~~~g~i~~lv~~l~~--------------------~~~~~~~~ 357 (408)
+..++..|+++|.+|+. .++++..++. .|+||+|+++|.. +.+.++.+
T Consensus 664 ---------~~~v~keAA~AL~nL~~~~~~~q~~~~v~-~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~ 733 (2102)
T PLN03200 664 ---------TEAVATQSARALAALSRSIKENRKVSYAA-EDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALA 733 (2102)
T ss_pred ---------ChHHHHHHHHHHHHHHhCCCHHHHHHHHH-cCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHh
Confidence 67889999999999984 4556667776 5999999996533 56777888
Q ss_pred cCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 358 SNVLTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 358 ~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
.|++++|+.+|+++. +..|+.|.++|..|..
T Consensus 734 ~~~I~~Lv~lLr~G~-~~~k~~Aa~AL~~L~~ 764 (2102)
T PLN03200 734 EDIILPLTRVLREGT-LEGKRNAARALAQLLK 764 (2102)
T ss_pred cCcHHHHHHHHHhCC-hHHHHHHHHHHHHHHh
Confidence 999999999998775 6678877777765554
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=3.1e-23 Score=204.97 Aligned_cols=261 Identities=13% Similarity=0.204 Sum_probs=220.6
Q ss_pred HHHHHHHHHHHhcCC-hh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338 99 QDEVKDIIRVAISKN-ED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED 176 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~-~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~ 176 (408)
.+.|+.+|+.|...+ +. +.+|+|+|.+++.+..+.-+.++++ |++|.++.+|.+++ ..+.|.|+++|+|++. |
T Consensus 108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~a-gavp~fi~Ll~s~~-~~v~eQavWALgNIag---d 182 (514)
T KOG0166|consen 108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDA-GAVPIFIQLLSSPS-ADVREQAVWALGNIAG---D 182 (514)
T ss_pred cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccC-CchHHHHHHhcCCc-HHHHHHHHHHHhcccc---C
Confidence 377899999998665 55 9999999999999999999999999 99999999999988 3344999999999995 6
Q ss_pred hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338 177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS 256 (408)
Q Consensus 177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~ 256 (408)
...+|..+. +.|++++|+.++..........+++|+|.|||.+...-..+.....++|.|..+|++. |.++...|+|
T Consensus 183 s~~~Rd~vl--~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~-D~~Vl~Da~W 259 (514)
T KOG0166|consen 183 SPDCRDYVL--SCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST-DEEVLTDACW 259 (514)
T ss_pred ChHHHHHHH--hhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence 666799998 9999999999999872347889999999999998754444443367899999999996 9999999999
Q ss_pred HHHHhccCcchHHHHH-hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHh
Q 036338 257 CLITISSSKRAKTKLI-NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQ 335 (408)
Q Consensus 257 aL~~Ls~~~~n~~~~~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 335 (408)
||..|+.+...+..++ ++|++|.||++|..+ +..++..|++++.|++...+.+.+.+.
T Consensus 260 AlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~---------------------~~~v~~PaLRaiGNIvtG~d~QTq~vi 318 (514)
T KOG0166|consen 260 ALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS---------------------SPKVVTPALRAIGNIVTGSDEQTQVVI 318 (514)
T ss_pred HHHHHhcCChHHHHHHHHccchHHHHHHHcCC---------------------CcccccHHHhhccceeeccHHHHHHHH
Confidence 9999998766555555 999999999999864 678889999999999998888888888
Q ss_pred hcCchHHHHHHHHH----------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036338 336 DAALLNGVVQKMLK----------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFR 388 (408)
Q Consensus 336 ~~g~i~~lv~~l~~----------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~ 388 (408)
..|++|.|..+|.+ +..++++++|.+|.|+.+|++......||+|+.+-.+.+
T Consensus 319 ~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 319 NSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTS 393 (514)
T ss_pred hcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcc
Confidence 78999999987763 477888999999999999998876666666655544443
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=4e-22 Score=185.86 Aligned_cols=254 Identities=19% Similarity=0.245 Sum_probs=214.7
Q ss_pred HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchH
Q 036338 101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQ 178 (408)
Q Consensus 101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~ 178 (408)
.+..+.+.-++.+.- |..+...|.++.. ..++|+.++.+ |++|.||.++++++ +.| +.+..++.|++. +.-
T Consensus 168 aL~pltrLakskdirvqrnatgaLlnmTh-s~EnRr~LV~a-G~lpvLVsll~s~d~dvq--yycttaisnIaV---d~~ 240 (550)
T KOG4224|consen 168 ALEPLTRLAKSKDIRVQRNATGALLNMTH-SRENRRVLVHA-GGLPVLVSLLKSGDLDVQ--YYCTTAISNIAV---DRR 240 (550)
T ss_pred chhhhHhhcccchhhHHHHHHHHHHHhhh-hhhhhhhhhcc-CCchhhhhhhccCChhHH--HHHHHHhhhhhh---hHH
Confidence 344555544444444 8889999999976 47899999999 99999999999998 666 999999999987 433
Q ss_pred HHHHHHhccCcc--cHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338 179 HLMNLILKRDQD--CLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS 256 (408)
Q Consensus 179 ~~~~~i~~~~~g--~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~ 256 (408)
. |+.++ +.+ .++.||.+++++ +..+|..|..+|.+|+.+.++...|++ .|.+|.+|++|+++ .....-+.+.
T Consensus 241 ~-Rk~La--qaep~lv~~Lv~Lmd~~-s~kvkcqA~lALrnlasdt~Yq~eiv~-ag~lP~lv~Llqs~-~~plilasVa 314 (550)
T KOG4224|consen 241 A-RKILA--QAEPKLVPALVDLMDDG-SDKVKCQAGLALRNLASDTEYQREIVE-AGSLPLLVELLQSP-MGPLILASVA 314 (550)
T ss_pred H-HHHHH--hcccchHHHHHHHHhCC-ChHHHHHHHHHHhhhcccchhhhHHHh-cCCchHHHHHHhCc-chhHHHHHHH
Confidence 3 66666 555 999999999999 999999999999999999999999998 89999999999987 6677788899
Q ss_pred HHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHHh
Q 036338 257 CLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQGRMEICQ 335 (408)
Q Consensus 257 aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~ 335 (408)
+++|++.++.|-..|+++|.+.|||.+|+- .++.+++-.|..+|++|+. .+.++..|..
T Consensus 315 CIrnisihplNe~lI~dagfl~pLVrlL~~--------------------~dnEeiqchAvstLrnLAasse~n~~~i~e 374 (550)
T KOG4224|consen 315 CIRNISIHPLNEVLIADAGFLRPLVRLLRA--------------------GDNEEIQCHAVSTLRNLAASSEHNVSVIRE 374 (550)
T ss_pred HHhhcccccCcccceecccchhHHHHHHhc--------------------CCchhhhhhHHHHHHHHhhhhhhhhHHHhh
Confidence 999999999999999999999999999985 2456799999999999997 6778888877
Q ss_pred hcCchHHHHHHHHH--------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 336 DAALLNGVVQKMLK--------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 336 ~~g~i~~lv~~l~~--------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
. |+||.+.++++. ..++...+.|.++.|+..+-+. +..+|.+|+.+|-.|+.
T Consensus 375 s-gAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 375 S-GAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSS 446 (550)
T ss_pred c-CchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhh
Confidence 5 999999997766 3445567899999998877655 46689999888888887
No 5
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=4.7e-21 Score=189.61 Aligned_cols=260 Identities=14% Similarity=0.171 Sum_probs=210.7
Q ss_pred HHHHHHHHhcCChh-HHHHHHHHHHHhhh-ChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH
Q 036338 102 VKDIIRVAISKNED-FSENLTKIVAFAKE-SDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH 179 (408)
Q Consensus 102 i~~Lv~~L~s~~~~-~~~Al~~L~~la~~-~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~ 179 (408)
...+++.+.+.+.+ +..+...++.+... ....-..+... |+||.+|.+|...+....+.+|+++|.|++. ++.++
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~-G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAs--gtse~ 144 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQS-GVVPRLVEFLSRDDNPTLQFEAAWALTNIAS--GTSEQ 144 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHc-CcHHHHHHHHccCCChhHHHHHHHHHHHHhc--Cchhh
Confidence 56778888888887 88999998888543 22334566667 9999999999876645556999999999998 77776
Q ss_pred HHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHH
Q 036338 180 LMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLI 259 (408)
Q Consensus 180 ~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~ 259 (408)
. +.++ ++|++|.|+.+|.++ +..+++.|+|+|+|++.+......++...|++++|+.++.........+.++|+|.
T Consensus 145 T-~~vv--~agavp~fi~Ll~s~-~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~Ls 220 (514)
T KOG0166|consen 145 T-KVVV--DAGAVPIFIQLLSSP-SADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLS 220 (514)
T ss_pred c-cccc--cCCchHHHHHHhcCC-cHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHH
Confidence 3 4455 999999999999999 99999999999999999876555555559999999999998633478999999999
Q ss_pred HhccCcchHHHHH-hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcC
Q 036338 260 TISSSKRAKTKLI-NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAA 338 (408)
Q Consensus 260 ~Ls~~~~n~~~~~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g 338 (408)
|||.+..-...+. -..++|.|..+|.+. |..+...|+++|.+|++.+..+.+++.++|
T Consensus 221 Nlcrgk~P~P~~~~v~~iLp~L~~ll~~~---------------------D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~g 279 (514)
T KOG0166|consen 221 NLCRGKNPSPPFDVVAPILPALLRLLHST---------------------DEEVLTDACWALSYLTDGSNEKIQMVIDAG 279 (514)
T ss_pred HHHcCCCCCCcHHHHHHHHHHHHHHHhcC---------------------CHHHHHHHHHHHHHHhcCChHHHHHHHHcc
Confidence 9999875333333 467899999999864 999999999999999988777888877789
Q ss_pred chHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 339 LLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 339 ~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
.+|.||.+|.. ...+.+++.|+++.|..+|.....+.+|+.|.+++-.+..
T Consensus 280 vv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA 351 (514)
T KOG0166|consen 280 VVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA 351 (514)
T ss_pred chHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc
Confidence 99999997655 4667889999999999999866666566656555555433
No 6
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=6.9e-22 Score=184.28 Aligned_cols=257 Identities=14% Similarity=0.157 Sum_probs=223.0
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIED 176 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~ 176 (408)
.+.++..+..+++.++. +..|-.++.+++-. .+++..|++. +++.+|+.-.-++. ..| ..++..+.||+. .+
T Consensus 84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn-~enk~liv~l-~Gl~~Li~qmmtd~vevq--cnaVgCitnLaT--~d 157 (550)
T KOG4224|consen 84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVN-MENKGLIVSL-LGLDLLILQMMTDGVEVQ--CNAVGCITNLAT--FD 157 (550)
T ss_pred hhhhhHHHHHHhCcchhhhhhhhhhhccceec-cCCceEEEec-cChHHHHHHhcCCCcEEE--eeehhhhhhhhc--cc
Confidence 45566777788888888 88888999999874 6888899999 77777665554444 444 999999999998 77
Q ss_pred hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338 177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS 256 (408)
Q Consensus 177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~ 256 (408)
++ |.-|. ..|++.+|+++-++. +..+|.++..+|.+|....++|..++. .|++|.||.+++++ +++++..++.
T Consensus 158 ~n--k~kiA--~sGaL~pltrLaksk-dirvqrnatgaLlnmThs~EnRr~LV~-aG~lpvLVsll~s~-d~dvqyyctt 230 (550)
T KOG4224|consen 158 SN--KVKIA--RSGALEPLTRLAKSK-DIRVQRNATGALLNMTHSRENRRVLVH-AGGLPVLVSLLKSG-DLDVQYYCTT 230 (550)
T ss_pred cc--hhhhh--hccchhhhHhhcccc-hhhHHHHHHHHHHHhhhhhhhhhhhhc-cCCchhhhhhhccC-ChhHHHHHHH
Confidence 77 56676 899999999977777 999999999999999999999999998 89999999999998 9999999999
Q ss_pred HHHHhccCcchHHHHHhcC--cHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHH
Q 036338 257 CLITISSSKRAKTKLINHK--LITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEIC 334 (408)
Q Consensus 257 aL~~Ls~~~~n~~~~~~~G--~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 334 (408)
++.|++-...+|+.++++| .||.||+|+.++ ++.++-.|.-+|.||+.+.+-+..++
T Consensus 231 aisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~---------------------s~kvkcqA~lALrnlasdt~Yq~eiv 289 (550)
T KOG4224|consen 231 AISNIAVDRRARKILAQAEPKLVPALVDLMDDG---------------------SDKVKCQAGLALRNLASDTEYQREIV 289 (550)
T ss_pred HhhhhhhhHHHHHHHHhcccchHHHHHHHHhCC---------------------ChHHHHHHHHHHhhhcccchhhhHHH
Confidence 9999999999999999988 999999999864 88999999999999999999999999
Q ss_pred hhcCchHHHHHHHHH----------HHH----------HHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhhc
Q 036338 335 QDAALLNGVVQKMLK----------TAQ----------EAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVN 390 (408)
Q Consensus 335 ~~~g~i~~lv~~l~~----------~~~----------~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~ 390 (408)
+ +|++|.+|++|.. .+. ..|+++|.+.+|+.+|....++..|=.|...|+.|...
T Consensus 290 ~-ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAas 364 (550)
T KOG4224|consen 290 E-AGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS 364 (550)
T ss_pred h-cCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhh
Confidence 8 5999999996644 121 12468999999999999888888999999999999873
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.87 E-value=2.9e-21 Score=178.78 Aligned_cols=260 Identities=15% Similarity=0.162 Sum_probs=215.8
Q ss_pred CHHHHHHHHHHHhcCChh--HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccc
Q 036338 98 SQDEVKDIIRVAISKNED--FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKI 174 (408)
Q Consensus 98 ~~~~i~~Lv~~L~s~~~~--~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~ 174 (408)
..+.++.+|+.+.....+ +.+|+|+|-+++++...-.+.+++. |+||.++.+|.++. +++ +.++++|+|++-
T Consensus 112 daGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~-~AVPlfiqlL~s~~~~V~--eQavWALGNiAG-- 186 (526)
T COG5064 112 DAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDA-GAVPLFIQLLSSTEDDVR--EQAVWALGNIAG-- 186 (526)
T ss_pred hccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeC-CchHHHHHHHcCchHHHH--HHHHHHhccccC--
Confidence 467789999999766555 8999999999999877777788999 99999999999987 555 999999999995
Q ss_pred cchHHHHHHHhccCcccHHHHHHHHhcCC-ChHHHHHHHHHHHHhhcCc--chhhHHhhhcChHHHHHHhcccCCCHHHH
Q 036338 175 EDQQHLMNLILKRDQDCLNSLLLVLKQQE-SVDSRIESLRLLEFIAGDA--DSKVKIAERDGLLAETVKSLSLDSDRRLI 251 (408)
Q Consensus 175 ~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~-~~~~~~~Aa~~L~~La~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 251 (408)
|++.+|..+. +.|++++++.+|.+.. +.....++.|.|.||+... ...+.-. ..++|.|.+++.+. |+++.
T Consensus 187 -DS~~~RD~vL--~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~-D~evl 260 (526)
T COG5064 187 -DSEGCRDYVL--QCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSR-DPEVL 260 (526)
T ss_pred -CchhHHHHHH--hcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhc-CHHHH
Confidence 6666799998 9999999999998761 3477789999999999753 2223322 34699999999997 99999
Q ss_pred HHHHHHHHHhccCcchHHHHH-hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHH
Q 036338 252 EASLSCLITISSSKRAKTKLI-NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGR 330 (408)
Q Consensus 252 ~~A~~aL~~Ls~~~~n~~~~~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~ 330 (408)
-.|.|||..|+..+..+..++ +.|.-+.||++|.++ +..++.-|++.+.|+....+.+
T Consensus 261 vDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~---------------------sa~iqtPalR~vGNIVTG~D~Q 319 (526)
T COG5064 261 VDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE---------------------SAKIQTPALRSVGNIVTGSDDQ 319 (526)
T ss_pred HHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc---------------------cccccCHHHHhhcCeeecCccc
Confidence 999999999999876655555 999999999999865 7788999999999999888888
Q ss_pred HHHHhhcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 331 MEICQDAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 331 ~~~~~~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
.+++...|.++.+-.+|.. +..+++++++.+|+|+.+|.+..-.-.|+++|.+..+.+.
T Consensus 320 TqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsg 399 (526)
T COG5064 320 TQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSG 399 (526)
T ss_pred eehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8887777999988775533 6788899999999999999876656667777776665543
No 8
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.86 E-value=2.4e-22 Score=150.97 Aligned_cols=72 Identities=39% Similarity=0.782 Sum_probs=63.0
Q ss_pred CCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338 10 VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ 81 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~ 81 (408)
+|++|+||||+++|+|||+++|||||||+||++|+..++.+||.|+++++..+++||..||+.|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 589999999999999999999999999999999999878899999999999999999999999999999875
No 9
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.84 E-value=6e-20 Score=170.08 Aligned_cols=264 Identities=14% Similarity=0.215 Sum_probs=218.0
Q ss_pred CCccCHHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhc
Q 036338 94 PVVLSQDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLIL 171 (408)
Q Consensus 94 ~~~~~~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~ 171 (408)
.++++.+.++.++++|.+++.+ +.+++|+|.+++.+++..|..+.+. |++++|+.+|.+.. +...++++.++|.||+
T Consensus 151 kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~-galeplL~ll~ss~~~ismlRn~TWtLSNlc 229 (526)
T COG5064 151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQC-GALEPLLGLLLSSAIHISMLRNATWTLSNLC 229 (526)
T ss_pred EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhc-CchHHHHHHHHhccchHHHHHHhHHHHHHhh
Confidence 4666788999999999999888 9999999999999999999999999 99999999999877 6778899999999999
Q ss_pred ccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHH
Q 036338 172 NKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLI 251 (408)
Q Consensus 172 ~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 251 (408)
..-...+. -..| .-++|.|.+|+.+- ++++...|+|+|.+|+..+..+..+....|..+.||++|.++ +..++
T Consensus 230 RGknP~P~-w~~i----sqalpiL~KLiys~-D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~-sa~iq 302 (526)
T COG5064 230 RGKNPPPD-WSNI----SQALPILAKLIYSR-DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE-SAKIQ 302 (526)
T ss_pred CCCCCCCc-hHHH----HHHHHHHHHHHhhc-CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc-ccccc
Confidence 73222221 1223 25689999999998 999999999999999998866666555589999999999997 88899
Q ss_pred HHHHHHHHHhccCcchHHHHH-hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHH
Q 036338 252 EASLSCLITISSSKRAKTKLI-NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGR 330 (408)
Q Consensus 252 ~~A~~aL~~Ls~~~~n~~~~~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~ 330 (408)
..|++.+.|+..+.+....++ +.|+++++..+|+++ ...++..|++++.|+......+
T Consensus 303 tPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~---------------------ke~irKEaCWTiSNITAGnteq 361 (526)
T COG5064 303 TPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP---------------------KENIRKEACWTISNITAGNTEQ 361 (526)
T ss_pred CHHHHhhcCeeecCccceehheecccHHHHHHHhcCh---------------------hhhhhhhhheeecccccCCHHH
Confidence 999999999999877665555 999999999999876 6699999999999998655555
Q ss_pred HHHHhhcCchHHHHHHHHH------------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 036338 331 MEICQDAALLNGVVQKMLK------------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKI 386 (408)
Q Consensus 331 ~~~~~~~g~i~~lv~~l~~------------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~ 386 (408)
.+.+.+++.+|+|+++|.. +..+-.++.|.+.+|..+|....+ ++-+.+.+.++.
T Consensus 362 iqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dN-kiiev~LD~~en 440 (526)
T COG5064 362 IQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDN-KIIEVALDAIEN 440 (526)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCc-cchhhhHHHHHH
Confidence 5555567999999997654 455666889999999999865543 356666665554
Q ss_pred H
Q 036338 387 F 387 (408)
Q Consensus 387 l 387 (408)
+
T Consensus 441 i 441 (526)
T COG5064 441 I 441 (526)
T ss_pred H
Confidence 3
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.80 E-value=7.9e-18 Score=175.09 Aligned_cols=261 Identities=18% Similarity=0.255 Sum_probs=208.5
Q ss_pred CHHHHHHHHHHHhcCChhHHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc--ch------------------
Q 036338 98 SQDEVKDIIRVAISKNEDFSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN--DV------------------ 157 (408)
Q Consensus 98 ~~~~i~~Lv~~L~s~~~~~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~--~~------------------ 157 (408)
+.+.+...++.|-...+++.++...|..+++. ++|-+.+++.+-.+..|.+.|+..- +.
T Consensus 121 ~~~~~d~yiE~lYe~~~ek~~~~~~il~La~~-~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~~ 199 (708)
T PF05804_consen 121 SINDLDEYIELLYEDIPEKIRGTSLILQLARN-PENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFSQ 199 (708)
T ss_pred CHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHH
Confidence 35677888888887656688899999999874 7777777766566677777764310 00
Q ss_pred ----------------------------------------------------------------hhHHHHHHHHHHhccc
Q 036338 158 ----------------------------------------------------------------NMLKQVIRVLDLILNK 173 (408)
Q Consensus 158 ----------------------------------------------------------------~~~e~A~~~L~~L~~~ 173 (408)
+.+..++.+|.||+.
T Consensus 200 fH~~l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~kQeqLlrv~~~lLlNLAe- 278 (708)
T PF05804_consen 200 FHPILAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRKQEQLLRVAFYLLLNLAE- 278 (708)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 112235567888875
Q ss_pred ccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHH
Q 036338 174 IEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEA 253 (408)
Q Consensus 174 ~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 253 (408)
+... +..+. +.|+|+.|+++|.++ +.+....++..|.+||...+||..|++ .|++++|++++.++ +.+++..
T Consensus 279 -d~~v--e~kM~--~~~iV~~Lv~~Ldr~-n~ellil~v~fLkkLSi~~ENK~~m~~-~giV~kL~kLl~s~-~~~l~~~ 350 (708)
T PF05804_consen 279 -DPRV--ELKMV--NKGIVSLLVKCLDRE-NEELLILAVTFLKKLSIFKENKDEMAE-SGIVEKLLKLLPSE-NEDLVNV 350 (708)
T ss_pred -ChHH--HHHHH--hcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCHHHHHHHHH-cCCHHHHHHHhcCC-CHHHHHH
Confidence 2222 45555 899999999999999 999999999999999999999999998 89999999999987 8899999
Q ss_pred HHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHH
Q 036338 254 SLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEI 333 (408)
Q Consensus 254 A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 333 (408)
++++|+|||.++++|..|++.|+||.|+.+|.++ ..+..++.+|.+|+.++++|..+
T Consensus 351 aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~-----------------------~~~~val~iLy~LS~dd~~r~~f 407 (708)
T PF05804_consen 351 ALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP-----------------------NFREVALKILYNLSMDDEARSMF 407 (708)
T ss_pred HHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC-----------------------chHHHHHHHHHHhccCHhhHHHH
Confidence 9999999999999999999999999999999753 56678999999999999999988
Q ss_pred HhhcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhhcCc
Q 036338 334 CQDAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVNYK 392 (408)
Q Consensus 334 ~~~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~ 392 (408)
... +++|.++++|+. ...+.+.+.||++.|+....... -.-+++++++
T Consensus 408 ~~T-dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~-------D~lLlKlIRN--- 476 (708)
T PF05804_consen 408 AYT-DCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTR-------DPLLLKLIRN--- 476 (708)
T ss_pred hhc-chHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcc-------cHHHHHHHHH---
Confidence 875 899999998877 56778888899999986654332 2346677777
Q ss_pred cccccccCcccc
Q 036338 393 SCLASYDTKTTH 404 (408)
Q Consensus 393 ~c~~~~~~~~~~ 404 (408)
++.++.++..
T Consensus 477 --iS~h~~~~k~ 486 (708)
T PF05804_consen 477 --ISQHDGPLKE 486 (708)
T ss_pred --HHhcCchHHH
Confidence 5566655443
No 11
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.75 E-value=1e-18 Score=127.88 Aligned_cols=63 Identities=49% Similarity=0.832 Sum_probs=59.7
Q ss_pred cccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHH
Q 036338 13 FFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIW 76 (408)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~ 76 (408)
+|.||||+++|+|||+++|||+||++||.+|+.. +.+||.|+++++..++++|..+++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence 5789999999999999999999999999999986 66899999999999999999999999987
No 12
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.69 E-value=5.5e-15 Score=154.04 Aligned_cols=196 Identities=18% Similarity=0.260 Sum_probs=170.2
Q ss_pred HHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHH
Q 036338 119 NLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLV 198 (408)
Q Consensus 119 Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~l 198 (408)
+...|.+++.+ ..+...+++. |+|+.|+++|++.+ ...+..++..|.+|+. ..++ +..+. +.|+|++|+++
T Consensus 269 ~~~lLlNLAed-~~ve~kM~~~-~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi--~~EN--K~~m~--~~giV~kL~kL 339 (708)
T PF05804_consen 269 AFYLLLNLAED-PRVELKMVNK-GIVSLLVKCLDREN-EELLILAVTFLKKLSI--FKEN--KDEMA--ESGIVEKLLKL 339 (708)
T ss_pred HHHHHHHHhcC-hHHHHHHHhc-CCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC--CHHH--HHHHH--HcCCHHHHHHH
Confidence 55567788764 7888889998 99999999998876 4455889999999987 6666 67777 89999999999
Q ss_pred HhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHH
Q 036338 199 LKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLIT 278 (408)
Q Consensus 199 L~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~ 278 (408)
+.++ +.+.+..+.++|.|||.+++.|..|.. .|++|.|+.+|.++ ..+..++.+|++||..+++|..+...++||
T Consensus 340 l~s~-~~~l~~~aLrlL~NLSfd~~~R~~mV~-~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~~r~~f~~TdcIp 414 (708)
T PF05804_consen 340 LPSE-NEDLVNVALRLLFNLSFDPELRSQMVS-LGLIPKLVELLKDP---NFREVALKILYNLSMDDEARSMFAYTDCIP 414 (708)
T ss_pred hcCC-CHHHHHHHHHHHHHhCcCHHHHHHHHH-CCCcHHHHHHhCCC---chHHHHHHHHHHhccCHhhHHHHhhcchHH
Confidence 9999 999999999999999999999999998 89999999999865 456779999999999999999999999999
Q ss_pred HHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHH
Q 036338 279 ELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLK 349 (408)
Q Consensus 279 ~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~ 349 (408)
.|+++|.+. .+..+...+++++.||+.++.+.+.+++ ++|++.|++..++
T Consensus 415 ~L~~~Ll~~--------------------~~~~v~~eliaL~iNLa~~~rnaqlm~~-g~gL~~L~~ra~~ 464 (708)
T PF05804_consen 415 QLMQMLLEN--------------------SEEEVQLELIALLINLALNKRNAQLMCE-GNGLQSLMKRALK 464 (708)
T ss_pred HHHHHHHhC--------------------CCccccHHHHHHHHHHhcCHHHHHHHHh-cCcHHHHHHHHHh
Confidence 999998652 3556667789999999999999988887 5889999887665
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.61 E-value=4.7e-13 Score=124.51 Aligned_cols=261 Identities=15% Similarity=0.229 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHhc--CChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhccccc
Q 036338 99 QDEVKDIIRVAIS--KNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIE 175 (408)
Q Consensus 99 ~~~i~~Lv~~L~s--~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~ 175 (408)
......++..|.. .+.+ -...+..++.-+-.++.||..+++. ++.+.+...|......+..++..+++..|.. +
T Consensus 144 a~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~-~il~Li~~~l~~~gk~~~VRel~~a~r~l~~--d 220 (461)
T KOG4199|consen 144 AEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMEL-KILELILQVLNREGKTRTVRELYDAIRALLT--D 220 (461)
T ss_pred cccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHh-hHHHHHHHHHcccCccHHHHHHHHHHHHhcC--C
Confidence 3444455666543 3344 6677888888888899999999999 9999999888765522456777888887765 3
Q ss_pred ch---------HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCC
Q 036338 176 DQ---------QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDS 246 (408)
Q Consensus 176 ~~---------~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~ 246 (408)
|+ ++ .+.|. +.|++..|++.|+-+-++.+...+..+|..|+..++.+..|.+ .|++..|++++.+..
T Consensus 221 DDiRV~fg~ah~h-Ar~ia--~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e-~GGl~tl~~~i~d~n 296 (461)
T KOG4199|consen 221 DDIRVVFGQAHGH-ARTIA--KEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAE-SGGLDTLLRCIDDSN 296 (461)
T ss_pred CceeeecchhhHH-HHHHH--HhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHhhhc
Confidence 32 22 33455 7889999999999876889999999999999999999999999 899999999998742
Q ss_pred CH---HHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHH
Q 036338 247 DR---RLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEIL 323 (408)
Q Consensus 247 ~~---~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L 323 (408)
+. .+.+.++..|+.|+.++.++..|++.|+.+.++.++... ..++.+.+.++.++..|
T Consensus 297 ~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h-------------------~~~p~Vi~~~~a~i~~l 357 (461)
T KOG4199|consen 297 EQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRH-------------------SDDPLVIQEVMAIISIL 357 (461)
T ss_pred hhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHc-------------------CCChHHHHHHHHHHHHH
Confidence 33 355778888999999999999999999999999998754 56899999999999999
Q ss_pred h-CCHHHHHHHHhhcCchHHHHHHHHH-----H--------HH---------HHHHhcCcHHHHHHHHhhcCCHHHHHHH
Q 036338 324 S-TTKQGRMEICQDAALLNGVVQKMLK-----T--------AQ---------EAVSSSNVLTKILLLMQSNCTPAVRQMS 380 (408)
Q Consensus 324 ~-~~~~~~~~~~~~~g~i~~lv~~l~~-----~--------~~---------~~~~~~g~~~~Ll~ll~~~~~~~~k~~A 380 (408)
+ +.|++-+.+++ +|+-...|+.|-+ . .+ ..+.=..|+..|+..-.+.. +..+..|
T Consensus 358 ~LR~pdhsa~~ie-~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h-~tce~~a 435 (461)
T KOG4199|consen 358 CLRSPDHSAKAIE-AGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANH-ETCEAAA 435 (461)
T ss_pred HhcCcchHHHHHh-cchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcC-ccHHHHH
Confidence 8 58999999988 4777777887655 0 11 11222456788877666553 4457777
Q ss_pred HHHHHHH
Q 036338 381 ADLLKIF 387 (408)
Q Consensus 381 ~~lL~~l 387 (408)
..+||-|
T Consensus 436 kaALRDL 442 (461)
T KOG4199|consen 436 KAALRDL 442 (461)
T ss_pred HHHHHhc
Confidence 7777765
No 14
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.52 E-value=3.1e-13 Score=138.37 Aligned_cols=205 Identities=16% Similarity=0.184 Sum_probs=170.0
Q ss_pred CHHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338 98 SQDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED 176 (408)
Q Consensus 98 ~~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~ 176 (408)
...+++..+++|.+.++. |..|+.-|..++.++.+.|..+.+. |+|+.||.+|.+.. .+++..|+++|.||..+..+
T Consensus 231 ~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrql-ggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~ 308 (717)
T KOG1048|consen 231 RDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQL-GGIPKLVALLDHRN-DEVQRQACGALRNLVFGKST 308 (717)
T ss_pred cccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHh-ccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCC
Confidence 345678889999988888 9999999999999999999999999 99999999999987 23449999999999863222
Q ss_pred -hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCC---------
Q 036338 177 -QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDS--------- 246 (408)
Q Consensus 177 -~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~--------- 246 (408)
++ +-.|. +.++|+.++++|+...|.++++..+.+|+||+.++..|..|.. .+++.|..-+-.+.
T Consensus 309 ~~N--Klai~--~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~--~al~tLt~~vI~P~Sgw~~~~~~ 382 (717)
T KOG1048|consen 309 DSN--KLAIK--ELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT--SALSTLTDNVIIPHSGWEEEPAP 382 (717)
T ss_pred ccc--chhhh--hcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH--HHHHHHHHhhcccccccCCCCcc
Confidence 33 56676 8999999999999733999999999999999999888888875 36788877663221
Q ss_pred ----CHHHHHHHHHHHHHhcc-CcchHHHHHh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHH
Q 036338 247 ----DRRLIEASLSCLITISS-SKRAKTKLIN-HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLV 320 (408)
Q Consensus 247 ----~~~~~~~A~~aL~~Ls~-~~~n~~~~~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L 320 (408)
+..+...++++|+|+++ ..+.|++|.+ .|.|+.|+..++.. .+....+...+|+++.+|
T Consensus 383 ~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~---------------i~~~~~d~K~VENcvCil 447 (717)
T KOG1048|consen 383 RKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTA---------------IQKSDLDSKSVENCVCIL 447 (717)
T ss_pred cccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHH---------------HHhccccchhHHHHHHHH
Confidence 25688999999999998 6779999995 89999999999852 122255889999999999
Q ss_pred HHHhC
Q 036338 321 EILST 325 (408)
Q Consensus 321 ~~L~~ 325 (408)
+||+.
T Consensus 448 RNLSY 452 (717)
T KOG1048|consen 448 RNLSY 452 (717)
T ss_pred hhcCc
Confidence 99985
No 15
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.51 E-value=8.7e-15 Score=97.01 Aligned_cols=39 Identities=38% Similarity=0.780 Sum_probs=31.4
Q ss_pred ccCccccCCCceecCCCCcccHhhHHHHHhcCC---CCCCCc
Q 036338 16 CPISLDVMKSPVSLCTGVTYDRASIQRWLDSGN---NTCPAT 54 (408)
Q Consensus 16 Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~---~~CP~~ 54 (408)
||||+++|+|||+++|||+||++||++||+... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998642 469987
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.47 E-value=4.4e-12 Score=117.95 Aligned_cols=195 Identities=14% Similarity=0.189 Sum_probs=165.1
Q ss_pred cCHHHHHHHHHHHhcC-Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccc
Q 036338 97 LSQDEVKDIIRVAISK-NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKI 174 (408)
Q Consensus 97 ~~~~~i~~Lv~~L~s~-~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~ 174 (408)
|+++.++.|+..|+.. ++. +..++.++.+.+. .+.++..|.+. |+++.+..+|.+++ .++.+.|+.+|.|++.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~-Ggi~lI~~lL~~p~-~~vr~~AL~aL~Nls~-- 83 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDL-GGISLIGSLLNDPN-PSVREKALNALNNLSV-- 83 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHc-CCHHHHHHHcCCCC-hHHHHHHHHHHHhcCC--
Confidence 5688999999999976 556 8899999999865 58999999999 99999999999987 3445999999999997
Q ss_pred cchHHHHHHHhccCcccHHHHHHHHhcC-CChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHH
Q 036338 175 EDQQHLMNLILKRDQDCLNSLLLVLKQQ-ESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEA 253 (408)
Q Consensus 175 ~~~~~~~~~i~~~~~g~i~~Lv~lL~~~-~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 253 (408)
..++ +..|. ..++.+++.+.+. .+.+.+..+.++|.+|+..++....+.. .++.|+.+|..| +..++..
T Consensus 84 ~~en--~~~Ik----~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~---~i~~ll~LL~~G-~~~~k~~ 153 (254)
T PF04826_consen 84 NDEN--QEQIK----MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN---YIPDLLSLLSSG-SEKTKVQ 153 (254)
T ss_pred Chhh--HHHHH----HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh---hHHHHHHHHHcC-ChHHHHH
Confidence 4545 55563 3577777766553 2668889999999999999888888754 599999999998 8899999
Q ss_pred HHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338 254 SLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT 326 (408)
Q Consensus 254 A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~ 326 (408)
++++|.|||.++.+...++.+.++..++.++.. +.+..+...++....||..+
T Consensus 154 vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~--------------------~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 154 VLKVLVNLSENPDMTRELLSAQVLSSFLSLFNS--------------------SESKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHhccCHHHHHHHHhccchhHHHHHHcc--------------------CCccHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999976 34678899999999999764
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.39 E-value=3.6e-11 Score=111.91 Aligned_cols=178 Identities=13% Similarity=0.154 Sum_probs=149.0
Q ss_pred hhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHH
Q 036338 137 LAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLE 216 (408)
Q Consensus 137 i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~ 216 (408)
+.+. +-++.|+.+|++..++-.++.|+.++.+.+. ...+ +..|. +.|+++.+..+|.++ +..+|+.|..+|.
T Consensus 8 ~l~~-~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa--f~~n--q~~Ir--~~Ggi~lI~~lL~~p-~~~vr~~AL~aL~ 79 (254)
T PF04826_consen 8 ILEA-QELQKLLCLLESTEDPFIQEKALIALGNSAA--FPFN--QDIIR--DLGGISLIGSLLNDP-NPSVREKALNALN 79 (254)
T ss_pred CcCH-HHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChhH--HHHHH--HcCCHHHHHHHcCCC-ChHHHHHHHHHHH
Confidence 3555 7789999999987655566999999999886 5555 78888 999999999999999 9999999999999
Q ss_pred HhhcCcchhhHHhhhcChHHHHHHhccc-CCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCC
Q 036338 217 FIAGDADSKVKIAERDGLLAETVKSLSL-DSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGN 295 (408)
Q Consensus 217 ~La~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~ 295 (408)
|++.+.+++..|-. .++.+.+...+ ..+.+++.+++++|.||+..++.+..+. +.|+.|+.+|.+.
T Consensus 80 Nls~~~en~~~Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G-------- 146 (254)
T PF04826_consen 80 NLSVNDENQEQIKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSG-------- 146 (254)
T ss_pred hcCCChhhHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcC--------
Confidence 99999999998853 47777775543 3467899999999999998887777665 4799999999863
Q ss_pred CCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHH
Q 036338 296 GNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLK 349 (408)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~ 349 (408)
+..++..++.+|.||+.++.....+... .+.+.++.++-+
T Consensus 147 -------------~~~~k~~vLk~L~nLS~np~~~~~Ll~~-q~~~~~~~Lf~~ 186 (254)
T PF04826_consen 147 -------------SEKTKVQVLKVLVNLSENPDMTRELLSA-QVLSSFLSLFNS 186 (254)
T ss_pred -------------ChHHHHHHHHHHHHhccCHHHHHHHHhc-cchhHHHHHHcc
Confidence 6789999999999999999998888875 778888875433
No 18
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=3.1e-10 Score=105.96 Aligned_cols=245 Identities=13% Similarity=0.209 Sum_probs=186.6
Q ss_pred HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHH
Q 036338 116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNS 194 (408)
Q Consensus 116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~ 194 (408)
-.+++..|..+...-++ +.+. -+...++.+|.... +..+....+..+..-+. -++-+ |+.+. +.++++.
T Consensus 124 l~ksL~al~~lt~~qpd----l~da-~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~-~hE~n--rQ~~m--~~~il~L 193 (461)
T KOG4199|consen 124 LKKSLEAINSLTHKQPD----LFDA-EAMAVVLKLLALKVESEEVTLLTLQWLQKACI-MHEVN--RQLFM--ELKILEL 193 (461)
T ss_pred HHHHHHHHHHhhcCCcc----hhcc-ccHHHHHHHHhcccchHHHHHHHHHHHHHHHH-HhHHH--HHHHH--HhhHHHH
Confidence 66778888777665554 4455 67788888886655 33333444444444333 03444 67776 8999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhhcCcchh----------hHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccC
Q 036338 195 LLLVLKQQESVDSRIESLRLLEFIAGDADSK----------VKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSS 264 (408)
Q Consensus 195 Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~----------~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~ 264 (408)
+...|...+...+-..+.+++..|..+++.| ..|+. .|++..|++.++.+.+|.....+..+|..|+..
T Consensus 194 i~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~-e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr 272 (461)
T KOG4199|consen 194 ILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAK-EGILTALTEALQAGIDPDSLVSLSTTLKALAVR 272 (461)
T ss_pred HHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHH-hhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence 9966654325667788899999998777655 34444 678899999999888899999999999999999
Q ss_pred cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHH
Q 036338 265 KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVV 344 (408)
Q Consensus 265 ~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv 344 (408)
++-.+.+++.|++..|+.++.+.. . .....+...++..|+.|+.+++.+..|++. ||.+.++
T Consensus 273 ~E~C~~I~e~GGl~tl~~~i~d~n-------~----------~~~r~l~k~~lslLralAG~DsvKs~IV~~-gg~~~ii 334 (461)
T KOG4199|consen 273 DEICKSIAESGGLDTLLRCIDDSN-------E----------QGNRTLAKTCLSLLRALAGSDSVKSTIVEK-GGLDKII 334 (461)
T ss_pred HHHHHHHHHccCHHHHHHHHhhhc-------h----------hhHHHHHHHHHHHHHHHhCCCchHHHHHHh-cChHHHH
Confidence 999999999999999999998740 0 123467788999999999999999999996 8999999
Q ss_pred HHHHH-----------------------HHHHHHHhcCcHHHHHHHHhhcCC-HHHHHHHHHHHHHHhh
Q 036338 345 QKMLK-----------------------TAQEAVSSSNVLTKILLLMQSNCT-PAVRQMSADLLKIFRV 389 (408)
Q Consensus 345 ~~l~~-----------------------~~~~~~~~~g~~~~Ll~ll~~~~~-~~~k~~A~~lL~~l~~ 389 (408)
.++++ +....+++.|+-...++.|+.... ..+++.|..++|.+..
T Consensus 335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~ 403 (461)
T KOG4199|consen 335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV 403 (461)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 98888 455667889999999999987643 3556677778887765
No 19
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.35 E-value=4.7e-13 Score=116.69 Aligned_cols=61 Identities=23% Similarity=0.448 Sum_probs=52.3
Q ss_pred CCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhc---------------CCCCCCCcccccCCCCCcccH
Q 036338 7 YITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDS---------------GNNTCPATMQVLQSKEFVPNR 67 (408)
Q Consensus 7 ~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~---------------~~~~CP~~~~~l~~~~l~~n~ 67 (408)
..+..++|.||||.+.++|||+++|||.||+.||.+|+.. +...||.|+.+++..+++|.+
T Consensus 12 ~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 12 LVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred eccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 3456788999999999999999999999999999999852 235799999999888888864
No 20
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.35 E-value=9.1e-13 Score=128.39 Aligned_cols=73 Identities=19% Similarity=0.332 Sum_probs=65.4
Q ss_pred CCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338 8 ITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ 81 (408)
Q Consensus 8 ~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~ 81 (408)
..+...+.||||+++|.+||+++|||+||..||..|+.. ...||.|+.++....+.+|..+..+|+.|.....
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R~ 93 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNLRP 93 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHhhH
Confidence 457788999999999999999999999999999999985 4579999999888889999999999999976544
No 21
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.31 E-value=8e-11 Score=120.87 Aligned_cols=186 Identities=14% Similarity=0.158 Sum_probs=147.1
Q ss_pred HHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-
Q 036338 144 VVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD- 221 (408)
Q Consensus 144 i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~- 221 (408)
+|-.+.+|.+.+ ..+ -+|..-|-.++. .+ +..|..+. +-|+|+.||.+|.+. +.+++.+|+++|.||...
T Consensus 235 lpe~i~mL~~q~~~~q--snaaaylQHlcf--gd-~~ik~~vr--qlggI~kLv~Ll~~~-~~evq~~acgaLRNLvf~~ 306 (717)
T KOG1048|consen 235 LPEVISMLMSQDPSVQ--SNAAAYLQHLCF--GD-NKIKSRVR--QLGGIPKLVALLDHR-NDEVQRQACGALRNLVFGK 306 (717)
T ss_pred cHHHHHHHhccChhhh--HHHHHHHHHHHh--hh-HHHHHHHH--HhccHHHHHHHhcCC-cHHHHHHHHHHHHhhhccc
Confidence 566788888766 444 888888999997 44 44577787 899999999999999 999999999999999864
Q ss_pred --cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCC
Q 036338 222 --ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGN 299 (408)
Q Consensus 222 --~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~ 299 (408)
++||..|.+ .++|+.|+++|+.-.|.++++..+++||||++++.-+..|+.. ++..|-+.+-.++.|=+. +.
T Consensus 307 ~~~~NKlai~~-~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~----~~ 380 (717)
T KOG1048|consen 307 STDSNKLAIKE-LNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEE----EP 380 (717)
T ss_pred CCcccchhhhh-cCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCC----CC
Confidence 368888988 8899999999996448899999999999999997777777655 667777665444211111 10
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHHhhcCchHHHHHH
Q 036338 300 GNGNGSGNGTVLITEKALRLVEILST-TKQGRMEICQDAALLNGVVQK 346 (408)
Q Consensus 300 ~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~~g~i~~lv~~ 346 (408)
.. -...+..+...+.++|+|++. ..+.|+++.+..|.|..|+..
T Consensus 381 ~~---~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~ 425 (717)
T KOG1048|consen 381 AP---RKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFS 425 (717)
T ss_pred cc---cccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHH
Confidence 00 112357788999999999987 899999999988999999885
No 22
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.30 E-value=3.8e-11 Score=128.36 Aligned_cols=225 Identities=16% Similarity=0.157 Sum_probs=180.7
Q ss_pred HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHH
Q 036338 116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSL 195 (408)
Q Consensus 116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~L 195 (408)
|..|+.+|-+|..++..||..+-...|+++.+|.-|.+..+ .++.-...+|.||+. ..|.+ +++++. +.|-+..|
T Consensus 368 RrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~pe-eL~QV~AsvLRNLSW-RAD~n-mKkvLr--E~GsVtaL 442 (2195)
T KOG2122|consen 368 RRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPE-ELLQVYASVLRNLSW-RADSN-MKKVLR--ETGSVTAL 442 (2195)
T ss_pred HHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChH-HHHHHHHHHHHhccc-ccccc-HHHHHH--hhhhHHHH
Confidence 67788899999999888999988777999999999988761 223556789999996 34544 488887 88988888
Q ss_pred HHHHh-cCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccC---CCHHHHHHHHHHHHHhcc----Ccc
Q 036338 196 LLVLK-QQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLD---SDRRLIEASLSCLITISS----SKR 266 (408)
Q Consensus 196 v~lL~-~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~~A~~aL~~Ls~----~~~ 266 (408)
+..-- .. ...+......+|+||+.+. +||..|....|++..||.+|.-. ......+.|-+.|+|.++ ...
T Consensus 443 a~~al~~~-kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~ 521 (2195)
T KOG2122|consen 443 AACALRNK-KESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCED 521 (2195)
T ss_pred HHHHHHhc-ccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccch
Confidence 76544 44 5567788899999998764 89999998899999999999742 245788999999999876 445
Q ss_pred hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHh-CCHHHHHHHHhhcCchHHHHH
Q 036338 267 AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILS-TTKQGRMEICQDAALLNGVVQ 345 (408)
Q Consensus 267 n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~-~~~~~~~~~~~~~g~i~~lv~ 345 (408)
.|+.+.+...+..|+++|.+. +..++-+++++|+||+ ++++.++.+.++ |+++.|-.
T Consensus 522 yRQILR~~NCLq~LLQ~LKS~---------------------SLTiVSNaCGTLWNLSAR~p~DQq~LwD~-gAv~mLrn 579 (2195)
T KOG2122|consen 522 YRQILRRHNCLQTLLQHLKSH---------------------SLTIVSNACGTLWNLSARSPEDQQMLWDD-GAVPMLRN 579 (2195)
T ss_pred HHHHHHHhhHHHHHHHHhhhc---------------------ceEEeecchhhhhhhhcCCHHHHHHHHhc-ccHHHHHH
Confidence 788888999999999999986 7899999999999997 589888888886 99997777
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHhh
Q 036338 346 KMLKTAQEAVSSSNVLTKILLLMQS 370 (408)
Q Consensus 346 ~l~~~~~~~~~~~g~~~~Ll~ll~~ 370 (408)
++. .+..|+..|....|..+|..
T Consensus 580 LIh--SKhkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 580 LIH--SKHKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred HHh--hhhhhhhhhHHHHHHHHhcC
Confidence 443 44556666777777777643
No 23
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.30 E-value=4.6e-11 Score=97.95 Aligned_cols=114 Identities=18% Similarity=0.235 Sum_probs=102.7
Q ss_pred CcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc
Q 036338 188 DQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD-ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR 266 (408)
Q Consensus 188 ~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~ 266 (408)
+.|+++.|+++|.++ +...+..++++|.+++.. ++.+..+.. .|+++.|+++|.++ ++.+++.|+++|++|+.+..
T Consensus 5 ~~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 5 QAGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HcCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 789999999999999 999999999999999998 677777776 79999999999997 89999999999999999874
Q ss_pred -hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 267 -AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 267 -n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
.+..+++.|+++.|+.+|.+. +..+++.++++|.+|+.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~---------------------~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSS---------------------NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcC---------------------CHHHHHHHHHHHHHhhC
Confidence 566677899999999999863 78999999999999863
No 24
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=3.2e-11 Score=117.00 Aligned_cols=206 Identities=15% Similarity=0.243 Sum_probs=161.5
Q ss_pred hhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHH
Q 036338 158 NMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAE 237 (408)
Q Consensus 158 ~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~ 237 (408)
+.+..|+..|.||+. + -.+...+. ....+..||+.|... +.+........|..|+...+||..+++ .|.++.
T Consensus 278 qLLrva~ylLlNlAe---d-~~~ElKMr--rkniV~mLVKaLdr~-n~~Ll~lv~~FLkKLSIf~eNK~~M~~-~~iveK 349 (791)
T KOG1222|consen 278 QLLRVAVYLLLNLAE---D-ISVELKMR--RKNIVAMLVKALDRS-NSSLLTLVIKFLKKLSIFDENKIVMEQ-NGIVEK 349 (791)
T ss_pred HHHHHHHHHHHHHhh---h-hhHHHHHH--HHhHHHHHHHHHccc-chHHHHHHHHHHHHhhhhccchHHHHh-ccHHHH
Confidence 345567888999985 2 21122233 778899999999998 899999999999999999999999998 899999
Q ss_pred HHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Q 036338 238 TVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKAL 317 (408)
Q Consensus 238 Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 317 (408)
|++++... +++.+...+..|+||+....+|.+|++.|.+|.|+.+|.++ .-..-|+
T Consensus 350 L~klfp~~-h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d-----------------------~~~~iA~ 405 (791)
T KOG1222|consen 350 LLKLFPIQ-HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSD-----------------------TKHGIAL 405 (791)
T ss_pred HHHhcCCC-CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCc-----------------------ccchhhh
Confidence 99999987 99999999999999999999999999999999999999864 3446789
Q ss_pred HHHHHHhCCHHHHHHHHhhcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHH
Q 036338 318 RLVEILSTTKQGRMEICQDAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAV 376 (408)
Q Consensus 318 ~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~ 376 (408)
.+|..++.++..+..+.-. .+|+.+.+.++. ...+-+.+..|+..|+.. ..
T Consensus 406 ~~lYh~S~dD~~K~MfayT-dci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~r-------a~ 477 (791)
T KOG1222|consen 406 NMLYHLSCDDDAKAMFAYT-DCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMER-------AI 477 (791)
T ss_pred hhhhhhccCcHHHHHHHHH-HHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHH-------Hh
Confidence 9999999888777777654 789988887766 122333445555555422 23
Q ss_pred HHHHHHHHHHHhhcCccccccccCcccc-cccC
Q 036338 377 RQMSADLLKIFRVNYKSCLASYDTKTTH-IMPF 408 (408)
Q Consensus 377 k~~A~~lL~~l~~~~~~c~~~~~~~~~~-~~~~ 408 (408)
+-+-.-+++++++ +++++.+|+. |++|
T Consensus 478 k~~D~lLmK~vRn-----iSqHeg~tqn~Fidy 505 (791)
T KOG1222|consen 478 KSRDLLLMKVVRN-----ISQHEGATQNMFIDY 505 (791)
T ss_pred cccchHHHHHHHH-----hhhccchHHHHHHHH
Confidence 4445567888888 7788888876 5554
No 25
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.29 E-value=1.6e-10 Score=123.63 Aligned_cols=247 Identities=13% Similarity=0.120 Sum_probs=187.4
Q ss_pred HH-HHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-----------chhhHHHHHHHHHHhcccccchHHHHHH
Q 036338 116 FS-ENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-----------DVNMLKQVIRVLDLILNKIEDQQHLMNL 183 (408)
Q Consensus 116 ~~-~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-----------~~~~~e~A~~~L~~L~~~~~~~~~~~~~ 183 (408)
++ .|+..|-.+..+ +++|..+-+. |++..+.+||.-.. ...+...|..+|.||.. +|.+. |..
T Consensus 314 ~lcaA~~~lMK~SFD-EEhR~aM~EL-G~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTF--GDv~N-Ka~ 388 (2195)
T KOG2122|consen 314 QLCAALCTLMKLSFD-EEHRHAMNEL-GGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTF--GDVAN-KAT 388 (2195)
T ss_pred hhHHHHHHHHHhhcc-HHHHHHHHHh-hhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccc--ccccc-hhh
Confidence 55 677777777764 8999999999 99999999885321 11244789999999998 66654 554
Q ss_pred HhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc--hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 036338 184 ILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD--SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITI 261 (408)
Q Consensus 184 i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~L 261 (408)
+ +...|+|+.+|..|.+. ..+...--+.+|.||+=..| .|+.+-+ .|-+..|+...-........++.+.|||||
T Consensus 389 L-Cs~rgfMeavVAQL~s~-peeL~QV~AsvLRNLSWRAD~nmKkvLrE-~GsVtaLa~~al~~~kEsTLKavLSALWNL 465 (2195)
T KOG2122|consen 389 L-CSQRGFMEAVVAQLISA-PEELLQVYASVLRNLSWRADSNMKKVLRE-TGSVTALAACALRNKKESTLKAVLSALWNL 465 (2195)
T ss_pred h-hhhhhHHHHHHHHHhcC-hHHHHHHHHHHHHhccccccccHHHHHHh-hhhHHHHHHHHHHhcccchHHHHHHHHhhh
Confidence 4 34779999999999998 88888889999999996543 4455545 888888888654322546788999999999
Q ss_pred ccC-cchHHHHHh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC----CHHHHHHHHh
Q 036338 262 SSS-KRAKTKLIN-HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST----TKQGRMEICQ 335 (408)
Q Consensus 262 s~~-~~n~~~~~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~----~~~~~~~~~~ 335 (408)
+.+ .+|+..|-. .|++..||.+|.-.- + .....+.|.|-+||.|.+. ++..|+-+.+
T Consensus 466 SAHcteNKA~iCaVDGALaFLVg~LSY~~-------q----------s~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~ 528 (2195)
T KOG2122|consen 466 SAHCTENKAEICAVDGALAFLVGTLSYEG-------Q----------SNTLAIIESAGGILRNVSSLIATCEDYRQILRR 528 (2195)
T ss_pred hhcccccchhhhcccchHHHHHhhccccC-------C----------cchhhhhhcCccHHHHHHhHhhccchHHHHHHH
Confidence 885 579999995 899999999997530 0 2356889999999999764 5666666666
Q ss_pred hcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 336 DAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 336 ~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
+ +.+..|+++|-. +.++.+.+.|+++.|..++++...-...-.| .+|+.|-+
T Consensus 529 ~-NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSa-aALrNLln 601 (2195)
T KOG2122|consen 529 H-NCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSA-AALRNLLN 601 (2195)
T ss_pred h-hHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHH-HHHHHHhc
Confidence 5 899999987644 6788889999999999999876655444444 44554444
No 26
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.20 E-value=8.4e-12 Score=81.66 Aligned_cols=38 Identities=34% Similarity=0.815 Sum_probs=33.0
Q ss_pred ccCccccCCCc-eecCCCCcccHhhHHHHHhcCCCCCCCc
Q 036338 16 CPISLDVMKSP-VSLCTGVTYDRASIQRWLDSGNNTCPAT 54 (408)
Q Consensus 16 Cpi~~~~~~dP-v~~~cgh~f~r~cI~~~~~~~~~~CP~~ 54 (408)
||||.+.++|| |+++|||+||++||++|++. ...||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence 89999999999 56799999999999999997 6789986
No 27
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.18 E-value=3.9e-10 Score=92.38 Aligned_cols=118 Identities=18% Similarity=0.271 Sum_probs=99.1
Q ss_pred hhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHH
Q 036338 136 FLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLL 215 (408)
Q Consensus 136 ~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L 215 (408)
.+++. |+++.|+.+|.+.+ ....+.++.+|.+++. ..++. ...+. +.|+++.|+.+|.++ +..++..++++|
T Consensus 2 ~~~~~-~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~--~~~~~-~~~~~--~~~~i~~l~~~l~~~-~~~v~~~a~~~L 73 (120)
T cd00020 2 AVIQA-GGLPALVSLLSSSD-ENVQREAAWALSNLSA--GNNDN-IQAVV--EAGGLPALVQLLKSE-DEEVVKAALWAL 73 (120)
T ss_pred hHHHc-CChHHHHHHHHcCC-HHHHHHHHHHHHHHhc--CCHHH-HHHHH--HCCChHHHHHHHhCC-CHHHHHHHHHHH
Confidence 35677 99999999999876 3455999999999997 43343 45555 789999999999998 999999999999
Q ss_pred HHhhcCcc-hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338 216 EFIAGDAD-SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS 263 (408)
Q Consensus 216 ~~La~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~ 263 (408)
.+|+.+.. .+..+.. .|+++.|++++.++ +..+++.++++|.+|+.
T Consensus 74 ~~l~~~~~~~~~~~~~-~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 74 RNLAAGPEDNKLIVLE-AGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHccCcHHHHHHHHH-CCChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 99998875 4455555 89999999999987 88999999999999974
No 28
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.18 E-value=4.6e-08 Score=100.60 Aligned_cols=236 Identities=17% Similarity=0.200 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
+...+.|...|.++++. |.-+++.|..++..++.....+.+. +.++.++.+|.+++ ..+.+.|+.+|.+|+. +..
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~-~l~~~i~~~L~~~d-~~Va~~A~~~L~~l~~--~~~ 151 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN-ELLPLIIQCLRDPD-LSVAKAAIKALKKLAS--HPE 151 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc-cHHHHHHHHHcCCc-HHHHHHHHHHHHHHhC--Cch
Confidence 45566777788888887 8889999999998877777788888 99999999998877 3445999999999997 444
Q ss_pred HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC 257 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a 257 (408)
. -+.+. +.+.+..|..++... +...|.++..++.+++...+.-..+....|+++.+++.|+++ |.-++.+++..
T Consensus 152 ~--~~~l~--~~~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d-DiLvqlnalel 225 (503)
T PF10508_consen 152 G--LEQLF--DSNLLSKLKSLMSQS-SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD-DILVQLNALEL 225 (503)
T ss_pred h--HHHHh--CcchHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc-cHHHHHHHHHH
Confidence 4 33454 778899999999987 888999999999999876554444444489999999999995 99999999999
Q ss_pred HHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCC-CC--CCCCC----------------------------CCC
Q 036338 258 LITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNG-NG--NGNGN----------------------------GSG 306 (408)
Q Consensus 258 L~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~-~~--~~~~~----------------------------~~~ 306 (408)
|..|+..+.+...+.+.|+++.|+.++.+. ..+. .+ ...|. -..
T Consensus 226 l~~La~~~~g~~yL~~~gi~~~L~~~l~~~-----~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~ 300 (503)
T PF10508_consen 226 LSELAETPHGLQYLEQQGIFDKLSNLLQDS-----EEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLE 300 (503)
T ss_pred HHHHHcChhHHHHHHhCCHHHHHHHHHhcc-----ccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhC
Confidence 999999989999999999999999999763 1111 11 00000 122
Q ss_pred CCCcchHHHHHHHHHHHhCCHHHHHHH-HhhcCchHHHHHHHHH
Q 036338 307 NGTVLITEKALRLVEILSTTKQGRMEI-CQDAALLNGVVQKMLK 349 (408)
Q Consensus 307 ~~~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~g~i~~lv~~l~~ 349 (408)
+.|......|..+|..++.+.+|+..+ ...++.+..+++.+..
T Consensus 301 s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~ 344 (503)
T PF10508_consen 301 SQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGD 344 (503)
T ss_pred CCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHH
Confidence 456778899999999999999999999 5554566666665544
No 29
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.14 E-value=1e-08 Score=98.79 Aligned_cols=255 Identities=18% Similarity=0.179 Sum_probs=180.2
Q ss_pred HHHHHHHHhcC-ChhHHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhc-Cc-----chh-hHHHHHHHHHHhccc
Q 036338 102 VKDIIRVAISK-NEDFSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSN-VN-----DVN-MLKQVIRVLDLILNK 173 (408)
Q Consensus 102 i~~Lv~~L~s~-~~~~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s-~~-----~~~-~~e~A~~~L~~L~~~ 173 (408)
+..+++.+.+. .++..+-...+..-+.+++..+-.+++. |.++.++++++. .+ +.. ....+......|..
T Consensus 225 ~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~-gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vlllt- 302 (604)
T KOG4500|consen 225 VFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQN-GLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLT- 302 (604)
T ss_pred HHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhc-chHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhc-
Confidence 33455555443 2333344444444555688999999999 999999999977 22 111 12223333333443
Q ss_pred ccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhccc----CCCHH
Q 036338 174 IEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSL----DSDRR 249 (408)
Q Consensus 174 ~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~----~~~~~ 249 (408)
+| ++++.+.. +...+..++..+++. +......++.+|+|++..++++..+++ .|++..|+++|.. +.+.+
T Consensus 303 -GD-eSMq~L~~--~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~ 376 (604)
T KOG4500|consen 303 -GD-ESMQKLHA--DPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVE 376 (604)
T ss_pred -Cc-hHHHHHhc--CcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccch
Confidence 34 44456554 455899999999999 999999999999999999999999998 8999999999853 13778
Q ss_pred HHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHH
Q 036338 250 LIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQG 329 (408)
Q Consensus 250 ~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~ 329 (408)
.+.+++.||+||.....|+..++.+|++.+++..+... .+.++.+-++.|+.+....+
T Consensus 377 ~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~---------------------~ppv~fkllgTlrM~~d~qe- 434 (604)
T KOG4500|consen 377 RQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLA---------------------SPPVTFKLLGTLRMIRDSQE- 434 (604)
T ss_pred hHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhc---------------------CCcchHHHHHHHHHHHhchH-
Confidence 99999999999999999999999999999999999864 78999999999999866443
Q ss_pred HHHHHhhcCchHHHHHHHHH----------------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHH
Q 036338 330 RMEICQDAALLNGVVQKMLK----------------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSA 381 (408)
Q Consensus 330 ~~~~~~~~g~i~~lv~~l~~----------------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~ 381 (408)
.+..+-+--|.+++.|.. ++...+.+.|++..++.++.+..-. .+..|-
T Consensus 435 --~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~t~~hi~-mqnEal 511 (604)
T KOG4500|consen 435 --YIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMFTKNHIN-MQNEAL 511 (604)
T ss_pred --HHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHHHHhhHH-HhHHHH
Confidence 222222333445554444 3445566889888888877665433 344444
Q ss_pred HHHHHHhh
Q 036338 382 DLLKIFRV 389 (408)
Q Consensus 382 ~lL~~l~~ 389 (408)
.+|-.+..
T Consensus 512 Val~~~~~ 519 (604)
T KOG4500|consen 512 VALLSTES 519 (604)
T ss_pred HHHHHHHH
Confidence 44444443
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=99.11 E-value=3e-11 Score=79.94 Aligned_cols=36 Identities=25% Similarity=0.624 Sum_probs=23.4
Q ss_pred ccCccccCCC----ceecCCCCcccHhhHHHHHhcC---CCCCC
Q 036338 16 CPISLDVMKS----PVSLCTGVTYDRASIQRWLDSG---NNTCP 52 (408)
Q Consensus 16 Cpi~~~~~~d----Pv~~~cgh~f~r~cI~~~~~~~---~~~CP 52 (408)
||||.+ |.+ |++++|||+||++||+++++.+ ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999864 35687
No 31
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.08 E-value=4.9e-11 Score=110.38 Aligned_cols=69 Identities=17% Similarity=0.384 Sum_probs=62.0
Q ss_pred CCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhc
Q 036338 11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSV 80 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~ 80 (408)
..-++|-||.++|+-||+++||||||.-||.+++.. ++.||.|..+++..+|+.|+.+..+|+.|....
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~R 89 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNFAR 89 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHHHH
Confidence 345899999999999999999999999999999984 677999999999999999999999999885543
No 32
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.07 E-value=9.5e-11 Score=77.61 Aligned_cols=39 Identities=38% Similarity=0.906 Sum_probs=35.8
Q ss_pred ccCccccCCCce-ecCCCCcccHhhHHHHHh-cCCCCCCCc
Q 036338 16 CPISLDVMKSPV-SLCTGVTYDRASIQRWLD-SGNNTCPAT 54 (408)
Q Consensus 16 Cpi~~~~~~dPv-~~~cgh~f~r~cI~~~~~-~~~~~CP~~ 54 (408)
||||.+.+.+|+ +++|||+||+.||.+|++ .+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 889999999999999998 456779987
No 33
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=99.06 E-value=6.4e-11 Score=83.63 Aligned_cols=59 Identities=27% Similarity=0.527 Sum_probs=33.7
Q ss_pred CcccccCccccCCCceec-CCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHH
Q 036338 12 SFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLI 73 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I 73 (408)
+-+.|++|.++|++||.+ .|.|.||+.||.+.+.. .||+|+.|-...|++-|+.|.++|
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence 457899999999999976 79999999999886653 399999988788999999988765
No 34
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=99.03 E-value=9.1e-11 Score=82.88 Aligned_cols=45 Identities=27% Similarity=0.678 Sum_probs=32.0
Q ss_pred CCcccccCccccCCCceec-CCCCcccHhhHHHHHhc-CCCCCCCcc
Q 036338 11 PSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDS-GNNTCPATM 55 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~-~~~~CP~~~ 55 (408)
...++||||++.|+|||+. .|||+|+|++|.+|+.+ +...||+.+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G 55 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG 55 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence 3458999999999999986 79999999999999954 345799954
No 35
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.98 E-value=2.3e-07 Score=95.45 Aligned_cols=210 Identities=15% Similarity=0.188 Sum_probs=167.1
Q ss_pred HHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHH
Q 036338 105 IIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNL 183 (408)
Q Consensus 105 Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~ 183 (408)
+...|.+.+.+ -..+...|..+.... ... .+ .. +..+.|...|.+++ ..+++.++..|.++.. +.+.. ...
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~-~l-~~-~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~--~~~~~-~~~ 114 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSAL-SPD-SL-LP-QYQPFLQRGLTHPS-PKVRRLALKQLGRIAR--HSEGA-AQL 114 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhcc-CHH-HH-HH-HHHHHHHHHhcCCC-HHHHHHHHHHHHHHhc--CCHHH-HHH
Confidence 66777777666 334555666665532 222 22 23 77888999998877 3445999999999876 44442 455
Q ss_pred HhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338 184 ILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS 263 (408)
Q Consensus 184 i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~ 263 (408)
+. +.+.++.++..|.++ +.++...|+.+|.+|+..+.....+.. .+.+..|..++... +..++-.+..++.+++.
T Consensus 115 ~~--~~~l~~~i~~~L~~~-d~~Va~~A~~~L~~l~~~~~~~~~l~~-~~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~ 189 (503)
T PF10508_consen 115 LV--DNELLPLIIQCLRDP-DLSVAKAAIKALKKLASHPEGLEQLFD-SNLLSKLKSLMSQS-SDIVRCRVYELLVEIAS 189 (503)
T ss_pred hc--CccHHHHHHHHHcCC-cHHHHHHHHHHHHHHhCCchhHHHHhC-cchHHHHHHHHhcc-CHHHHHHHHHHHHHHHh
Confidence 65 899999999999999 999999999999999999888887876 67799999999885 66788889999999987
Q ss_pred Ccc-hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHH
Q 036338 264 SKR-AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNG 342 (408)
Q Consensus 264 ~~~-n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~ 342 (408)
..+ ......+.|.++.++..|.++ |.-++..++.+|..|+.++.+...+... |.++.
T Consensus 190 ~S~~~~~~~~~sgll~~ll~eL~~d---------------------DiLvqlnalell~~La~~~~g~~yL~~~-gi~~~ 247 (503)
T PF10508_consen 190 HSPEAAEAVVNSGLLDLLLKELDSD---------------------DILVQLNALELLSELAETPHGLQYLEQQ-GIFDK 247 (503)
T ss_pred cCHHHHHHHHhccHHHHHHHHhcCc---------------------cHHHHHHHHHHHHHHHcChhHHHHHHhC-CHHHH
Confidence 655 555555899999999999854 8899999999999999999999988885 99999
Q ss_pred HHHHHHH
Q 036338 343 VVQKMLK 349 (408)
Q Consensus 343 lv~~l~~ 349 (408)
|++++.+
T Consensus 248 L~~~l~~ 254 (503)
T PF10508_consen 248 LSNLLQD 254 (503)
T ss_pred HHHHHhc
Confidence 9997655
No 36
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=2e-07 Score=95.62 Aligned_cols=247 Identities=14% Similarity=0.199 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHhcCCh-h-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhccccc
Q 036338 99 QDEVKDIIRVAISKNE-D-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIE 175 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~-~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~ 175 (408)
.+.|+.|+.++.++.. + |..|+..|..+++ .+|..+.. -|.++|+..|..+. +......++.++.++.. +
T Consensus 21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga--~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~--~ 93 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA--QGMKPLIQVLQRDYMDPEIIKYALDTLLILTS--H 93 (970)
T ss_pred HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH--cccHHHHHHHhhccCCHHHHHHHHHHHHHHHh--c
Confidence 6789999999987753 4 9999999999976 57877776 46899999999877 77778899999999876 4
Q ss_pred ch------HH----------HHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC--cchhhHHhhhcChHHH
Q 036338 176 DQ------QH----------LMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD--ADSKVKIAERDGLLAE 237 (408)
Q Consensus 176 ~~------~~----------~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~--~~~~~~i~~~~g~i~~ 237 (408)
++ +. ....|. ..+.|..|+..+..- +-.+|..+..+|..+-.. .+.+..+...+-+|..
T Consensus 94 dd~~~v~dds~qsdd~g~~iae~fik--~qd~I~lll~~~e~~-DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~ 170 (970)
T KOG0946|consen 94 DDSPEVMDDSTQSDDLGLWIAEQFIK--NQDNITLLLQSLEEF-DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISK 170 (970)
T ss_pred CcchhhcccchhhhHHHHHHHHHHHc--CchhHHHHHHHHHhh-chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHH
Confidence 42 11 122455 789999999999998 999999999999988554 4677777777889999
Q ss_pred HHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHH
Q 036338 238 TVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLIN-HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKA 316 (408)
Q Consensus 238 Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 316 (408)
|+.+|.+. -...|..|.-.|..|.....+..+++. ..++..|..++... |. .+...+++.+
T Consensus 171 lmdlL~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeE----Gg-------------~dGgIVveDC 232 (970)
T KOG0946|consen 171 LMDLLRDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEE----GG-------------LDGGIVVEDC 232 (970)
T ss_pred HHHHHhhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhc----CC-------------CCCcchHHHH
Confidence 99999985 556888899999999999999999996 78999999999864 10 1133899999
Q ss_pred HHHHHHHhCC-HHHHHHHHhhcCchHHHHHHHHH----------------------------------------HHHHHH
Q 036338 317 LRLVEILSTT-KQGRMEICQDAALLNGVVQKMLK----------------------------------------TAQEAV 355 (408)
Q Consensus 317 ~~~L~~L~~~-~~~~~~~~~~~g~i~~lv~~l~~----------------------------------------~~~~~~ 355 (408)
+-.|.||-.. ..|+.-+.+ ++-||.|.++|.- .++..+
T Consensus 233 L~ll~NLLK~N~SNQ~~FrE-~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l 311 (970)
T KOG0946|consen 233 LILLNNLLKNNISNQNFFRE-GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKAL 311 (970)
T ss_pred HHHHHHHHhhCcchhhHHhc-cccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 9999999874 556665554 5889988864422 456678
Q ss_pred HhcCcHHHHHHHHhhcCCH
Q 036338 356 SSSNVLTKILLLMQSNCTP 374 (408)
Q Consensus 356 ~~~g~~~~Ll~ll~~~~~~ 374 (408)
.+.+++..|+.++.+.+.|
T Consensus 312 ~ss~ll~~Lc~il~~~~vp 330 (970)
T KOG0946|consen 312 VSSHLLDVLCTILMHPGVP 330 (970)
T ss_pred HHcchHHHHHHHHcCCCCc
Confidence 8899999999988776433
No 37
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.94 E-value=6e-10 Score=77.12 Aligned_cols=47 Identities=23% Similarity=0.398 Sum_probs=40.6
Q ss_pred CcccccCccccCCCceecCCCCc-ccHhhHHHHHhcCCCCCCCcccccC
Q 036338 12 SFFRCPISLDVMKSPVSLCTGVT-YDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~cgh~-f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
+++.|+||.+.+.++++.+|||. ||..|+.+|+. ....||.|++++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 46789999999999999999999 99999999998 5678999998864
No 38
>PRK09687 putative lyase; Provisional
Probab=98.92 E-value=7.4e-08 Score=91.48 Aligned_cols=217 Identities=12% Similarity=0.072 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
+..+..+...+++.++. |..|++.|..+...... .. -+++.|..++..+.+..+...|+.+|+++.. ...
T Consensus 53 ~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~------~~-~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~--~~~ 123 (280)
T PRK09687 53 QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC------QD-NVFNILNNLALEDKSACVRASAINATGHRCK--KNP 123 (280)
T ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc------hH-HHHHHHHHHHhcCCCHHHHHHHHHHHhcccc--ccc
Confidence 34455666667777776 88888888887432110 11 3577777775444334455889999988754 121
Q ss_pred HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC 257 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a 257 (408)
. . ...+++.+...+.+. +..+|..|+.+|..+. . ..+++.|+.+|++. ++.++..|+.+
T Consensus 124 ~------~--~~~a~~~l~~~~~D~-~~~VR~~a~~aLg~~~----------~-~~ai~~L~~~L~d~-~~~VR~~A~~a 182 (280)
T PRK09687 124 L------Y--SPKIVEQSQITAFDK-STNVRFAVAFALSVIN----------D-EAAIPLLINLLKDP-NGDVRNWAAFA 182 (280)
T ss_pred c------c--chHHHHHHHHHhhCC-CHHHHHHHHHHHhccC----------C-HHHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 1 0 223456677777777 8899999999986542 2 45789999999987 88999999999
Q ss_pred HHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhc
Q 036338 258 LITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDA 337 (408)
Q Consensus 258 L~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 337 (408)
|..+.... ..+++.|+.+|.++ +..++..|+.+|..+-. .
T Consensus 183 Lg~~~~~~--------~~~~~~L~~~L~D~---------------------~~~VR~~A~~aLg~~~~-----------~ 222 (280)
T PRK09687 183 LNSNKYDN--------PDIREAFVAMLQDK---------------------NEEIRIEAIIGLALRKD-----------K 222 (280)
T ss_pred HhcCCCCC--------HHHHHHHHHHhcCC---------------------ChHHHHHHHHHHHccCC-----------h
Confidence 99984322 24778899999754 88999999999988643 2
Q ss_pred CchHHHHHHHHH-----HHHHHHH---hcCcHHHHHHHHhhcCCHHHHHHHHHHHH
Q 036338 338 ALLNGVVQKMLK-----TAQEAVS---SSNVLTKILLLMQSNCTPAVRQMSADLLK 385 (408)
Q Consensus 338 g~i~~lv~~l~~-----~~~~~~~---~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~ 385 (408)
.++|.|++.|-. .+.+++- ..-+++.|..++....++.++.+|.+.|+
T Consensus 223 ~av~~Li~~L~~~~~~~~a~~ALg~ig~~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 223 RVLSVLIKELKKGTVGDLIIEAAGELGDKTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred hHHHHHHHHHcCCchHHHHHHHHHhcCCHhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 456767765432 2333332 34567888888876668888999866654
No 39
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=6.8e-10 Score=106.88 Aligned_cols=76 Identities=25% Similarity=0.433 Sum_probs=63.2
Q ss_pred CCCcCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338 3 RDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ 81 (408)
Q Consensus 3 ~~~~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~ 81 (408)
.........+++.||||.+.|++|++++|||+||+.||..+|. ....||.|+. .. ..+.+|..+..+++.+...+.
T Consensus 3 ~~~~~~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~-~~~~~n~~l~~~~~~~~~~~~ 78 (386)
T KOG2177|consen 3 SAALLEVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PS-RNLRPNVLLANLVERLRQLRL 78 (386)
T ss_pred chhhhhhccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-ch-hccCccHHHHHHHHHHHhcCC
Confidence 3444556778999999999999999999999999999999998 6678999995 22 277799999998888876544
No 40
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=6.2e-10 Score=94.63 Aligned_cols=53 Identities=30% Similarity=0.581 Sum_probs=44.6
Q ss_pred CcccccCccccCCC--ceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcc
Q 036338 12 SFFRCPISLDVMKS--PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVP 65 (408)
Q Consensus 12 ~~~~Cpi~~~~~~d--Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~ 65 (408)
.-|.||||++-++. ||.+.|||.||+.||++.++.+ ..||.|++.++.+.+.+
T Consensus 130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~-~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT-NKCPTCRKKITHKQFHR 184 (187)
T ss_pred cccCCCceecchhhccccccccchhHHHHHHHHHHHhC-CCCCCcccccchhhhee
Confidence 34899999999987 6778999999999999999864 46999999887766543
No 41
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.1e-09 Score=97.37 Aligned_cols=56 Identities=29% Similarity=0.597 Sum_probs=49.8
Q ss_pred CcccccCccccCCCceecCCCCcccHhhHHHHHhc--CCCCCCCcccccCCCCCcccH
Q 036338 12 SFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDS--GNNTCPATMQVLQSKEFVPNR 67 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~--~~~~CP~~~~~l~~~~l~~n~ 67 (408)
..|-|-||++.-+|||++.|||-||=.||.+|+.. +...||+|+..++.+.++|-+
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 56999999999999999999999999999999875 345699999999888888854
No 42
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.84 E-value=2.2e-09 Score=97.90 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=40.8
Q ss_pred CCCcccccCccccCCCc--------eecCCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338 10 VPSFFRCPISLDVMKSP--------VSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~dP--------v~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
..++..||||++.+.+| ++.+|||.||+.||.+|... ..+||.||.++.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence 34567899999988764 55689999999999999874 668999998764
No 43
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.83 E-value=2.8e-09 Score=71.55 Aligned_cols=43 Identities=42% Similarity=0.879 Sum_probs=38.7
Q ss_pred cccCccccCCCceecC-CCCcccHhhHHHHHhcCCCCCCCcccc
Q 036338 15 RCPISLDVMKSPVSLC-TGVTYDRASIQRWLDSGNNTCPATMQV 57 (408)
Q Consensus 15 ~Cpi~~~~~~dPv~~~-cgh~f~r~cI~~~~~~~~~~CP~~~~~ 57 (408)
.|+||.+.+.+|+.+. |||.||..|+.+|+..+...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 4999999999999886 999999999999998767789999864
No 44
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.83 E-value=1.4e-09 Score=73.18 Aligned_cols=40 Identities=38% Similarity=0.832 Sum_probs=33.9
Q ss_pred cccCccccCC---CceecCCCCcccHhhHHHHHhcCCCCCCCcc
Q 036338 15 RCPISLDVMK---SPVSLCTGVTYDRASIQRWLDSGNNTCPATM 55 (408)
Q Consensus 15 ~Cpi~~~~~~---dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~ 55 (408)
.||||++.|. .++.++|||.|+++||.+|++. +.+||.||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence 5999999994 4667799999999999999987 46899996
No 45
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.83 E-value=1.9e-09 Score=98.01 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=60.0
Q ss_pred CCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338 11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ 81 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~ 81 (408)
..-+.|-||.+.++-|+.++||||||.-||..++.+ .+.||.|+.+.+..-++.+.-++..++.+.....
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~r~ 92 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHARNRD 92 (391)
T ss_pred hhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhhhccH
Confidence 345789999999999999999999999999999985 6679999998877778888888888887766544
No 46
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.81 E-value=6.1e-07 Score=86.71 Aligned_cols=261 Identities=14% Similarity=0.197 Sum_probs=181.2
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc------chhhHHHHHHHHHHhc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN------DVNMLKQVIRVLDLIL 171 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~------~~~~~e~A~~~L~~L~ 171 (408)
.+.++.|.+...|.+.+ -.+.-+.|.+++.++.++|..+-+. |+-..++++|+.-. ..+...-+.+.|.|..
T Consensus 86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~l-gGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~ 164 (604)
T KOG4500|consen 86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNL-GGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI 164 (604)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhc-CCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence 44556666666666666 7788899999999999999999999 99888888887643 2244445667888876
Q ss_pred ccccchHHHHHHHhccCcccHHHHHHHHhc---------------------------------------------CCChH
Q 036338 172 NKIEDQQHLMNLILKRDQDCLNSLLLVLKQ---------------------------------------------QESVD 206 (408)
Q Consensus 172 ~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~---------------------------------------------~~~~~ 206 (408)
. +...++..+. +.|+++.|+.++.- .-+++
T Consensus 165 l---~~~~l~aq~~--~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d 239 (604)
T KOG4500|consen 165 L---DSRELRAQVA--DAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVRED 239 (604)
T ss_pred C---CcHHHHHHHH--hcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccc
Confidence 5 3333455555 78888766544421 11222
Q ss_pred HHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCC-------HHHHHHHHHHHHHhccCcchHHHHHhcC-cHH
Q 036338 207 SRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSD-------RRLIEASLSCLITISSSKRAKTKLINHK-LIT 278 (408)
Q Consensus 207 ~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~-------~~~~~~A~~aL~~Ls~~~~n~~~~~~~G-~i~ 278 (408)
.++-...+|...+.++..|..+++ .|.++.++.+++.-.+ ....+.++....-|..+++.-..+.+.| .+.
T Consensus 240 ~~eM~feila~~aend~Vkl~la~-~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~ 318 (604)
T KOG4500|consen 240 IDEMIFEILAKAAENDLVKLSLAQ-NGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLD 318 (604)
T ss_pred hhhHHHHHHHHHhcCcceeeehhh-cchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHH
Confidence 223334445555666777777777 7889999999876212 1223334444444566777777777666 778
Q ss_pred HHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHH---------
Q 036338 279 ELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLK--------- 349 (408)
Q Consensus 279 ~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~--------- 349 (408)
.++.-+.|. +......+.-++.|+++.+++...+++. +.+..|++.|.+
T Consensus 319 ~~~sw~~S~---------------------d~~l~t~g~LaigNfaR~D~~ci~~v~~-~~~nkL~~~l~~~~~vdgnV~ 376 (604)
T KOG4500|consen 319 FLESWFRSD---------------------DSNLITMGSLAIGNFARRDDICIQLVQK-DFLNKLISCLMQEKDVDGNVE 376 (604)
T ss_pred HHHHHhcCC---------------------chhHHHHHHHHHHhhhccchHHHHHHHH-HHHHHHHHHHHHhcCCCccch
Confidence 888888753 7788899999999999999999999997 888888888777
Q ss_pred ----------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 350 ----------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 350 ----------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
..+..++.+|....++..+.....| +..+--..||+++.
T Consensus 377 ~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~pp-v~fkllgTlrM~~d 431 (604)
T KOG4500|consen 377 RQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPP-VTFKLLGTLRMIRD 431 (604)
T ss_pred hHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCc-chHHHHHHHHHHHh
Confidence 2445567899999998888877655 45555555665554
No 47
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=8.4e-08 Score=93.61 Aligned_cols=260 Identities=14% Similarity=0.152 Sum_probs=180.0
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
..-+.-||+.|..++.+ -.-...-|..++- -.+|+..+.+. |.|+.|+++..... +......+..|.|++. |.
T Consensus 303 kniV~mLVKaLdr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~-~iveKL~klfp~~h-~dL~~~tl~LlfNlSF---D~ 376 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQN-GIVEKLLKLFPIQH-PDLRKATLMLLFNLSF---DS 376 (791)
T ss_pred HhHHHHHHHHHcccchHHHHHHHHHHHHhhh-hccchHHHHhc-cHHHHHHHhcCCCC-HHHHHHHHHHhhhccc---cc
Confidence 34455677777766655 3334444555554 36889999999 99999999998766 2234778899999986 54
Q ss_pred HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC 257 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a 257 (408)
.. +..++ ..|.+|.|+.+|.+. .-+.-|...|+.++.+++.|..+.- ..+|+.|.+.+-.+.+.++-.+-...
T Consensus 377 gl-r~KMv--~~GllP~l~~ll~~d---~~~~iA~~~lYh~S~dD~~K~Mfay-Tdci~~lmk~v~~~~~~~vdl~lia~ 449 (791)
T KOG1222|consen 377 GL-RPKMV--NGGLLPHLASLLDSD---TKHGIALNMLYHLSCDDDAKAMFAY-TDCIKLLMKDVLSGTGSEVDLALIAL 449 (791)
T ss_pred cc-cHHHh--hccchHHHHHHhCCc---ccchhhhhhhhhhccCcHHHHHHHH-HHHHHHHHHHHHhcCCceecHHHHHH
Confidence 43 55555 899999999999865 2334588999999999999999987 68999999988766455554444444
Q ss_pred HHHhccCcchHHHHHhcCcHHHHHH------------HhccCCCCCCCCCCCC------CCCCCCCCCCCcchHHHHHHH
Q 036338 258 LITISSSKRAKTKLINHKLITELGK------------LITDGHNGNGSGNGNG------NGNGNGSGNGTVLITEKALRL 319 (408)
Q Consensus 258 L~~Ls~~~~n~~~~~~~G~i~~Lv~------------lL~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~a~~~ 319 (408)
-.|||.+..|.+.+.+..++..|.+ +++.- -++++..++- ...+....+.+....-.++++
T Consensus 450 ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRni-SqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGt 528 (791)
T KOG1222|consen 450 CINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNI-SQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGT 528 (791)
T ss_pred HHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHh-hhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHH
Confidence 4689988888777776555554443 33221 1112212211 111112224456788899999
Q ss_pred HHHHhCCHHHHHHHHhhcCchHHHHHHHHH----------------------HHHHHHHhcCcHHHHHHHHhhcC
Q 036338 320 VEILSTTKQGRMEICQDAALLNGVVQKMLK----------------------TAQEAVSSSNVLTKILLLMQSNC 372 (408)
Q Consensus 320 L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~----------------------~~~~~~~~~g~~~~Ll~ll~~~~ 372 (408)
|.||...+-.+.++..+...||.+-..|.- .+......+|.++.|+++|++..
T Consensus 529 lanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~Q 603 (791)
T KOG1222|consen 529 LANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQ 603 (791)
T ss_pred HhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhc
Confidence 999999888899999887888876654433 34444567899999999998643
No 48
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.79 E-value=1.6e-07 Score=90.81 Aligned_cols=203 Identities=15% Similarity=0.159 Sum_probs=144.7
Q ss_pred HHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcC-----ChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 104 DIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFD-----GLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 104 ~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~-----G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
.+++.+ +++.+ ....+..+..+..+++.....+.+.. ....+++.++.+++ ..+...|+.+|..|.. ...
T Consensus 62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D-~~i~~~a~~iLt~Ll~--~~~ 137 (312)
T PF03224_consen 62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRND-SFIQLKAAFILTSLLS--QGP 137 (312)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SS-HHHHHHHHHHHHHHHT--STT
T ss_pred HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCC-HHHHHHHHHHHHHHHH--cCC
Confidence 344444 34455 77788888888888776666665521 25778888887775 4455889999998875 333
Q ss_pred HHHHHHHhccCcccHHHHHHHHhcCC---ChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhc------ccCCCH
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLKQQE---SVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSL------SLDSDR 248 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~---~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL------~~~~~~ 248 (408)
.. .... ..+.++.++..|++.. +.+.+.-++.+|.+|...++.|..+.. .|+++.|+.+| .+..+.
T Consensus 138 ~~-~~~~---~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~ 212 (312)
T PF03224_consen 138 KR-SEKL---VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSGI 212 (312)
T ss_dssp T---HHH---HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------HH
T ss_pred cc-ccch---HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCch
Confidence 31 1111 2367888888887521 345568899999999999999999998 89999999999 444467
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHH
Q 036338 249 RLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQ 328 (408)
Q Consensus 249 ~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~ 328 (408)
+.+=.++-++|-|+.+++....+.+.+.|+.|+++++. .....+..-++++|.||...+.
T Consensus 213 Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~--------------------~~KEKvvRv~la~l~Nl~~~~~ 272 (312)
T PF03224_consen 213 QLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKD--------------------SIKEKVVRVSLAILRNLLSKAP 272 (312)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH----------------------SHHHHHHHHHHHHHTTSSSS
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHh--------------------cccchHHHHHHHHHHHHHhccH
Confidence 89999999999999999999999999999999999987 3478999999999999997544
Q ss_pred --HHHHHHh
Q 036338 329 --GRMEICQ 335 (408)
Q Consensus 329 --~~~~~~~ 335 (408)
....++.
T Consensus 273 ~~~~~~mv~ 281 (312)
T PF03224_consen 273 KSNIELMVL 281 (312)
T ss_dssp TTHHHHHHH
T ss_pred HHHHHHHHH
Confidence 5555555
No 49
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.75 E-value=7.7e-09 Score=66.94 Aligned_cols=39 Identities=54% Similarity=1.054 Sum_probs=35.9
Q ss_pred ccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCc
Q 036338 16 CPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPAT 54 (408)
Q Consensus 16 Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~ 54 (408)
||||.+..++|++++|||.||..|+.+|+..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999998666779986
No 50
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=6.9e-09 Score=95.02 Aligned_cols=52 Identities=17% Similarity=0.409 Sum_probs=45.7
Q ss_pred CCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCC
Q 036338 11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEF 63 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l 63 (408)
+..+.|.||++-++||--++|||.||=+||.+|..+ ...||.||+.+++.++
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV 288 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence 455899999999999999999999999999999986 4459999998877654
No 51
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.68 E-value=2.3e-08 Score=93.91 Aligned_cols=96 Identities=16% Similarity=0.225 Sum_probs=59.7
Q ss_pred CcccccCcccc-CCCce----ecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCC----CcccHHH------HHHHHHH
Q 036338 12 SFFRCPISLDV-MKSPV----SLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKE----FVPNRTL------QRLIQIW 76 (408)
Q Consensus 12 ~~~~Cpi~~~~-~~dPv----~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~----l~~n~~l------~~~I~~~ 76 (408)
++..||+|+.- +.+|- +.+|||+||++||..+|..+...||.|+.++.... +.++..+ |+.|...
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~iRkrv~~i 81 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVDIRKRVLKI 81 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHHHHHHHHHH
Confidence 45689999983 34553 33699999999999998877788999999887755 4445443 4444444
Q ss_pred HHhcCCCCCCCCCCCCCCCccCHHHHHHHHHHHhcC
Q 036338 77 SDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAISK 112 (408)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~ 112 (408)
+.+....+++.. .+.. .-+.++.+|-.|-.+
T Consensus 82 ~Nk~e~dF~~l~---~yNd--YLE~vEdii~nL~~~ 112 (309)
T TIGR00570 82 YNKREEDFPSLR---EYND--YLEEVEDIVYNLTNN 112 (309)
T ss_pred HccchhccCCHH---HHHH--HHHHHHHHHHHhhcC
Confidence 443332232211 1000 135566666666554
No 52
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.68 E-value=1.4e-06 Score=84.35 Aligned_cols=176 Identities=11% Similarity=0.134 Sum_probs=131.1
Q ss_pred HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc---chhhHHHHHHHHHHhcccccc
Q 036338 101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN---DVNMLKQVIRVLDLILNKIED 176 (408)
Q Consensus 101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~---~~~~~e~A~~~L~~L~~~~~~ 176 (408)
.+..+++.+.+++.. +..|+..|..+....+....... . +.++.++..|++.. +.+.+..++.+|.+|.. .+
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~-~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~--~~ 181 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-K-EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR--SK 181 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-H-HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT--SH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-H-HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC--cc
Confidence 467788888877766 88899999999776554444333 3 67888999988743 23445888999999986 34
Q ss_pred hHHHHHHHhccCcccHHHHHHHH------hcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHH
Q 036338 177 QQHLMNLILKRDQDCLNSLLLVL------KQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRL 250 (408)
Q Consensus 177 ~~~~~~~i~~~~~g~i~~Lv~lL------~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 250 (408)
.. |..+. +.|+++.|+.+| .++.+...+-+++.+++.|+.+++....+.. .+.|+.|+++++......+
T Consensus 182 ~~--R~~f~--~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~L~~i~~~~~KEKv 256 (312)
T PF03224_consen 182 EY--RQVFW--KSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNK-KYLIPLLADILKDSIKEKV 256 (312)
T ss_dssp HH--HHHHH--THHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHT-TSHHHHHHHHHHH--SHHH
T ss_pred hh--HHHHH--hcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhc-cchHHHHHHHHHhcccchH
Confidence 33 78887 899999999999 3332567778999999999999999999987 6799999999997667789
Q ss_pred HHHHHHHHHHhccCcc--hHHHHHhcCcHHHHHHHhc
Q 036338 251 IEASLSCLITISSSKR--AKTKLINHKLITELGKLIT 285 (408)
Q Consensus 251 ~~~A~~aL~~Ls~~~~--n~~~~~~~G~i~~Lv~lL~ 285 (408)
.+-++.+|+||..... +...|+..|+++.|-.|..
T Consensus 257 vRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 257 VRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 9999999999998776 8899998877666655554
No 53
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.60 E-value=3.3e-08 Score=66.34 Aligned_cols=41 Identities=15% Similarity=0.394 Sum_probs=34.9
Q ss_pred cccCccccC---CCceecCCCCcccHhhHHHHHhcCCCCCCCccc
Q 036338 15 RCPISLDVM---KSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQ 56 (408)
Q Consensus 15 ~Cpi~~~~~---~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~ 56 (408)
.|++|.+.+ +.|++++|||+||.+||.++. .....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 399999999 348888999999999999998 34567999974
No 54
>PRK09687 putative lyase; Provisional
Probab=98.59 E-value=3.8e-06 Score=79.82 Aligned_cols=213 Identities=11% Similarity=0.040 Sum_probs=145.1
Q ss_pred HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH
Q 036338 101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH 179 (408)
Q Consensus 101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~ 179 (408)
.+..|+..|...+.. +..|++.|..+-. . .+++.+..++.+.+ ..+...|+.+|+.|-. .+..
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~-~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~--~~~~- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGG-----------Q-DVFRLAIELCSSKN-PIERDIGADILSQLGM--AKRC- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------c-hHHHHHHHHHhCCC-HHHHHHHHHHHHhcCC--Cccc-
Confidence 355678888888777 8889999886642 2 67788888887776 3344999999998753 1110
Q ss_pred HHHHHhccCcccHHHHHHH-HhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHH
Q 036338 180 LMNLILKRDQDCLNSLLLV-LKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCL 258 (408)
Q Consensus 180 ~~~~i~~~~~g~i~~Lv~l-L~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL 258 (408)
..-+++.|..+ ++.. +..+|..|+.+|+++....... . ..+++.|...+.++ +..++..|+.+|
T Consensus 88 --------~~~a~~~L~~l~~~D~-d~~VR~~A~~aLG~~~~~~~~~----~-~~a~~~l~~~~~D~-~~~VR~~a~~aL 152 (280)
T PRK09687 88 --------QDNVFNILNNLALEDK-SACVRASAINATGHRCKKNPLY----S-PKIVEQSQITAFDK-STNVRFAVAFAL 152 (280)
T ss_pred --------hHHHHHHHHHHHhcCC-CHHHHHHHHHHHhccccccccc----c-hHHHHHHHHHhhCC-CHHHHHHHHHHH
Confidence 12346777777 4556 8999999999999986433211 1 23567788888887 889999999999
Q ss_pred HHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcC
Q 036338 259 ITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAA 338 (408)
Q Consensus 259 ~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g 338 (408)
..+.. ..+|+.|+.+|.++ +..+...|+.+|..+.... ..
T Consensus 153 g~~~~----------~~ai~~L~~~L~d~---------------------~~~VR~~A~~aLg~~~~~~---------~~ 192 (280)
T PRK09687 153 SVIND----------EAAIPLLINLLKDP---------------------NGDVRNWAAFALNSNKYDN---------PD 192 (280)
T ss_pred hccCC----------HHHHHHHHHHhcCC---------------------CHHHHHHHHHHHhcCCCCC---------HH
Confidence 76532 23889999999864 7789999999999984311 13
Q ss_pred chHHHHHHHHH---HHHHHHH-------hcCcHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 036338 339 LLNGVVQKMLK---TAQEAVS-------SSNVLTKILLLMQSNCTPAVRQMSADLLKIF 387 (408)
Q Consensus 339 ~i~~lv~~l~~---~~~~~~~-------~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l 387 (408)
.++.|+..|.. +++..++ ..-+++.|+..|+.+. .+..|..+|..+
T Consensus 193 ~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~---~~~~a~~ALg~i 248 (280)
T PRK09687 193 IREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT---VGDLIIEAAGEL 248 (280)
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc---hHHHHHHHHHhc
Confidence 45556664433 3333332 3567888888887643 344554444443
No 55
>PHA02926 zinc finger-like protein; Provisional
Probab=98.57 E-value=3.4e-08 Score=87.22 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=40.6
Q ss_pred CCCCcccccCccccCCC---------ceecCCCCcccHhhHHHHHhcC-----CCCCCCcccccC
Q 036338 9 TVPSFFRCPISLDVMKS---------PVSLCTGVTYDRASIQRWLDSG-----NNTCPATMQVLQ 59 (408)
Q Consensus 9 ~~~~~~~Cpi~~~~~~d---------Pv~~~cgh~f~r~cI~~~~~~~-----~~~CP~~~~~l~ 59 (408)
...++..|+||.+...+ ++..+|+|+||..||.+|.+.. ...||.||+.+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 34667899999998644 4666899999999999998742 246999998764
No 56
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.54 E-value=4.9e-05 Score=75.73 Aligned_cols=222 Identities=14% Similarity=0.129 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHhcCCh-h-HHHHHHHHHHHhhhChhhhhhhhhc----CChHHHHHHHhhcCcchhhHHHHHHHHHHhcc
Q 036338 99 QDEVKDIIRVAISKNE-D-FSENLTKIVAFAKESDENKTFLAKF----DGLVVMLVEILSNVNDVNMLKQVIRVLDLILN 172 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~-~-~~~Al~~L~~la~~~~~~r~~i~~~----~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~ 172 (408)
+..+..++..++..+. + ....+.-+..+..+++.....+.+. +....+++.+|...+ .-+...|..+|..+..
T Consensus 52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHh
Confidence 4567778888876654 4 6667777888877776666666654 356778888887655 2234778888877764
Q ss_pred cccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCC-CHHHH
Q 036338 173 KIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDS-DRRLI 251 (408)
Q Consensus 173 ~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~ 251 (408)
.......... ..-.+..|...|+++.+...+.-++..|..|...++.|..+.. .+++++|+.+|+... +.+.+
T Consensus 131 --~~~~~~~~~~---l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~-~~~v~~L~~~L~~~~~~~Ql~ 204 (429)
T cd00256 131 --FGLAKMEGSD---LDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVL-ADGVPTLVKLLSNATLGFQLQ 204 (429)
T ss_pred --cCccccchhH---HHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHH-ccCHHHHHHHHhhccccHHHH
Confidence 1111000000 0113345566666542567788888999999999999998887 668999999998643 56888
Q ss_pred HHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCH----
Q 036338 252 EASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTK---- 327 (408)
Q Consensus 252 ~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~---- 327 (408)
=.++-++|-|+..++....+.+.+.|+.|+++++. .....+...++++|.||...+
T Consensus 205 Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~--------------------s~KEKvvRv~l~~l~Nll~~~~~~~ 264 (429)
T cd00256 205 YQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKE--------------------STKEKVIRIVLAIFRNLISKRVDRE 264 (429)
T ss_pred HHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHh--------------------hhhHHHHHHHHHHHHHHhhcccccc
Confidence 89999999999998877777789999999999986 347899999999999998743
Q ss_pred ---HHHHHHHhhcCchHHHHHHHHH
Q 036338 328 ---QGRMEICQDAALLNGVVQKMLK 349 (408)
Q Consensus 328 ---~~~~~~~~~~g~i~~lv~~l~~ 349 (408)
.....++. .+++.+++.|..
T Consensus 265 ~~~~~~~~mv~--~~l~~~l~~L~~ 287 (429)
T cd00256 265 VKKTAALQMVQ--CKVLKTLQSLEQ 287 (429)
T ss_pred hhhhHHHHHHH--cChHHHHHHHhc
Confidence 12234443 245556665544
No 57
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.4e-08 Score=95.21 Aligned_cols=69 Identities=25% Similarity=0.327 Sum_probs=58.8
Q ss_pred CCCCcccccCccccCCCceecC-CCCcccHhhHHHHHhcCCCCCCCcccccCC-CCCcccHHHHHHHHHHH
Q 036338 9 TVPSFFRCPISLDVMKSPVSLC-TGVTYDRASIQRWLDSGNNTCPATMQVLQS-KEFVPNRTLQRLIQIWS 77 (408)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~~-cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~-~~l~~n~~l~~~I~~~~ 77 (408)
.+-.+|.||||+.+++..++++ |+|.||+.||-.-+..++..||.|++.+.. ..|.++.....+|.+..
T Consensus 39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY 109 (381)
T ss_pred HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence 4566799999999999999985 999999999999999888899999998755 67888877777776554
No 58
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=6.6e-08 Score=86.78 Aligned_cols=76 Identities=29% Similarity=0.461 Sum_probs=70.0
Q ss_pred cCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338 6 LYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ 81 (408)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~ 81 (408)
...++|+.++|.|+.++|++||+.+.|-||+|.-|++.+..-....|+|+.+++...++||..|+..|..|...+.
T Consensus 204 k~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~ 279 (284)
T KOG4642|consen 204 KKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENE 279 (284)
T ss_pred ccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcc
Confidence 3467899999999999999999999999999999999998866679999999999999999999999999998765
No 59
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1e-05 Score=84.07 Aligned_cols=234 Identities=17% Similarity=0.215 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHhcC-Chh-HHHHHHHHHHHh-hhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhccccc
Q 036338 99 QDEVKDIIRVAISK-NED-FSENLTKIVAFA-KESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIE 175 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~-~~~-~~~Al~~L~~la-~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~ 175 (408)
...+..|++-|+.. ++. |.+|+..|..+. ..+++.-.-+--- -.||.|+.+|+......++-.|+.+|.+|+. -
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~-slvp~Lv~LL~~E~n~DIMl~AcRaltyl~e--v 242 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVK-SLVPVLVALLSHEHNFDIMLLACRALTYLCE--V 242 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHh--h
Confidence 45677888888876 444 899999988764 4455444333222 6899999999887744455899999999974 1
Q ss_pred chHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHH
Q 036338 176 DQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASL 255 (408)
Q Consensus 176 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~ 255 (408)
=+.. -.+++ +.++||.|+.-|..=.-.++-+.+..+|..++..+. + .|.. .|++-..+.+|.-- +..+++.|+
T Consensus 243 lP~S-~a~vV--~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~-~-AiL~-AG~l~a~LsylDFF-Si~aQR~Al 315 (1051)
T KOG0168|consen 243 LPRS-SAIVV--DEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP-K-AILQ-AGALSAVLSYLDFF-SIHAQRVAL 315 (1051)
T ss_pred ccch-hheee--cccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc-H-HHHh-cccHHHHHHHHHHH-HHHHHHHHH
Confidence 1222 35566 899999999888754367888999999999997653 3 4445 78899999998865 778999999
Q ss_pred HHHHHhccC--cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC----CHHH
Q 036338 256 SCLITISSS--KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST----TKQG 329 (408)
Q Consensus 256 ~aL~~Ls~~--~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~----~~~~ 329 (408)
....|.|.. ++.-..+++ ++|.|-.+|+.. +....|.++-.+..++. .++-
T Consensus 316 aiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~---------------------D~k~ies~~ic~~ri~d~f~h~~~k 372 (1051)
T KOG0168|consen 316 AIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQ---------------------DKKPIESVCICLTRIADGFQHGPDK 372 (1051)
T ss_pred HHHHHHHhcCCCccchHHHH--HHHHHHHHHhhc---------------------cchhHHHHHHHHHHHHHhcccChHH
Confidence 999999984 333333333 689999999864 88888988888888875 4677
Q ss_pred HHHHHhhcCchHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Q 036338 330 RMEICQDAALLNGVVQKMLKTAQEAVSSSNVLTKILLLM 368 (408)
Q Consensus 330 ~~~~~~~~g~i~~lv~~l~~~~~~~~~~~g~~~~Ll~ll 368 (408)
-.+++.+ +.|.-.+++|. +...+++.|....++.+|
T Consensus 373 Ldql~s~-dLi~~~~qLls--vt~t~Ls~~~~~~vIrml 408 (1051)
T KOG0168|consen 373 LDQLCSH-DLITNIQQLLS--VTPTILSNGTYTGVIRML 408 (1051)
T ss_pred HHHHhch-hHHHHHHHHHh--cCcccccccchhHHHHHH
Confidence 7788876 77777777433 335566665555554444
No 60
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.50 E-value=1.2e-07 Score=86.69 Aligned_cols=70 Identities=16% Similarity=0.364 Sum_probs=58.5
Q ss_pred ccccCccccCCCceec-CCCCcccHhhHHHHHhcCCCCCCCcccc-cCCCCCcccHHHHHHHHHHHHhcCCC
Q 036338 14 FRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQV-LQSKEFVPNRTLQRLIQIWSDSVQHR 83 (408)
Q Consensus 14 ~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~-l~~~~l~~n~~l~~~I~~~~~~~~~~ 83 (408)
+.||+|+.++++|+-+ +|||+||.+||+..+-...+.||.|... +-.+.|.|+...+..|+.+...+.+.
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq~~~ 346 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQRKK 346 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHHHHh
Confidence 8999999999999988 6999999999999877678899999642 33466889998888888887755533
No 61
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=3.7e-05 Score=73.43 Aligned_cols=166 Identities=18% Similarity=0.265 Sum_probs=126.8
Q ss_pred chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcCh
Q 036338 156 DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGL 234 (408)
Q Consensus 156 ~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~ 234 (408)
+.+-.+.|+.-|..++. +-.....++ +.|++.+++..|.++ +.+.|+.|+++|...+.+. .....+.+ .|+
T Consensus 96 ~le~ke~ald~Le~lve---~iDnAndl~---~~ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E-~~~ 167 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVE---DIDNANDLI---SLGGLVPLLGYLENS-DAELRELAARVIGTAVQNNPKSQEQVIE-LGA 167 (342)
T ss_pred CHHHHHHHHHHHHHHHH---hhhhHHhHh---hccCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCHHHHHHHHH-ccc
Confidence 44555888888877774 333223444 789999999999999 9999999999999998764 57777777 789
Q ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHhccCcc-hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchH
Q 036338 235 LAETVKSLSLDSDRRLIEASLSCLITISSSKR-AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLIT 313 (408)
Q Consensus 235 i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~-n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (408)
++.|+.+|....+..++..|+.|+++|-.+.. ....+...++...|...|.+. +.+...+
T Consensus 168 L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~-------------------~~~~~lk 228 (342)
T KOG2160|consen 168 LSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN-------------------NTSVKLK 228 (342)
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC-------------------CcchHHH
Confidence 99999999976567888999999999998755 566667888999999999974 4588999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHH
Q 036338 314 EKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLK 349 (408)
Q Consensus 314 ~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~ 349 (408)
.+++..+..|......-..++.. -+.+.++..+..
T Consensus 229 rK~~~Ll~~Ll~~~~s~~d~~~~-~~f~~~~~~l~~ 263 (342)
T KOG2160|consen 229 RKALFLLSLLLQEDKSDEDIASS-LGFQRVLENLIS 263 (342)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHH-hhhhHHHHHHhh
Confidence 99999999998643333335543 334444443333
No 62
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=3.4e-05 Score=73.69 Aligned_cols=183 Identities=15% Similarity=0.197 Sum_probs=139.5
Q ss_pred CChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHhccCc
Q 036338 112 KNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQ 189 (408)
Q Consensus 112 ~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~ 189 (408)
.+.+ +..|+..|..++.. =.|-..+... |+..+++..|.+.+ ..+ +.|+++|+..+. +... .++.+. +.
T Consensus 95 ~~le~ke~ald~Le~lve~-iDnAndl~~~-ggl~~ll~~l~~~~~~lR--~~Aa~Vigt~~q--NNP~-~Qe~v~--E~ 165 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVED-IDNANDLISL-GGLVPLLGYLENSDAELR--ELAARVIGTAVQ--NNPK-SQEQVI--EL 165 (342)
T ss_pred CCHHHHHHHHHHHHHHHHh-hhhHHhHhhc-cCHHHHHHHhcCCcHHHH--HHHHHHHHHHHh--cCHH-HHHHHH--Hc
Confidence 3455 88999999999875 5677889999 99999999998877 555 999999999886 3333 366665 88
Q ss_pred ccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc-hhhHHhhhcChHHHHHHhcccC-CCHHHHHHHHHHHHHhccCcch
Q 036338 190 DCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD-SKVKIAERDGLLAETVKSLSLD-SDRRLIEASLSCLITISSSKRA 267 (408)
Q Consensus 190 g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~-~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~~A~~aL~~Ls~~~~n 267 (408)
|+++.|+..|.+..+..+|..|..++..|-.+.. ....+.. .++...|.++|+++ .+...++.++..+..|......
T Consensus 166 ~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~-~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s 244 (342)
T KOG2160|consen 166 GALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLK-LNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKS 244 (342)
T ss_pred ccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHh-cCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhh
Confidence 9999999999876477888999999999988754 4555555 55689999999974 4788999999999998876554
Q ss_pred HHHHHh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 268 KTKLIN-HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 268 ~~~~~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
...++. .|....++.+..+ .+..+.+.++.++-.+..
T Consensus 245 ~~d~~~~~~f~~~~~~l~~~---------------------l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 245 DEDIASSLGFQRVLENLISS---------------------LDFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhHHHHhhhhHHHHHHhhc---------------------cchhhhHHHHHHHHHHHH
Confidence 444554 5554555555543 367788888877777654
No 63
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.39 E-value=1.2e-07 Score=88.60 Aligned_cols=67 Identities=16% Similarity=0.349 Sum_probs=54.6
Q ss_pred CCCCcccccCccccCCCceecC-CCCcccHhhHHHHHhcCCCCCCCcccccCC----CCCcccHHHHHHHHHH
Q 036338 9 TVPSFFRCPISLDVMKSPVSLC-TGVTYDRASIQRWLDSGNNTCPATMQVLQS----KEFVPNRTLQRLIQIW 76 (408)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~~-cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~----~~l~~n~~l~~~I~~~ 76 (408)
++-...+|++|..+|.|+-|+. |=|||||+||-+++.. ..+||.|...+.. ..+..+..|+.++.+.
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL 82 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL 82 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence 4567789999999999999885 9999999999999987 6689999876543 3466777777776543
No 64
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.8e-07 Score=92.18 Aligned_cols=69 Identities=19% Similarity=0.373 Sum_probs=54.7
Q ss_pred cccccCccccCCCceecCCCCcccHhhHHHHHhcC----CCCCCCcccccCCCCCcccH----HHHHHHHHHHHhcC
Q 036338 13 FFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSG----NNTCPATMQVLQSKEFVPNR----TLQRLIQIWSDSVQ 81 (408)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~----~~~CP~~~~~l~~~~l~~n~----~l~~~I~~~~~~~~ 81 (408)
+..||||++...-|+.+.|||.||-.||.+||..+ ...||.|+..+..+++.|-+ .-++.++.....++
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng 262 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNG 262 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccC
Confidence 78899999999999999999999999999998764 35799999998887776643 22333555555555
No 65
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.37 E-value=3.2e-06 Score=69.56 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=109.4
Q ss_pred ccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHH
Q 036338 190 DCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKT 269 (408)
Q Consensus 190 g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~ 269 (408)
+.+..||.-.....+.+.|+....-|.|++-++-|-..+.+ ..+++.+|+.|..+ +...++-+.+.|.|||..+.|.+
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrq-l~vLdlFvdsl~e~-ne~LvefgIgglCNlC~d~~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQ-LDVLDLFVDSLEEQ-NELLVEFGIGGLCNLCLDKTNAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHH-hhHHHHHHHHhhcc-cHHHHHHhHHHHHhhccChHHHH
Confidence 45667777666544899999999999999999988888877 88999999999987 88999999999999999999999
Q ss_pred HHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC-HHHHHHHHhhcCchHHHHHHHH
Q 036338 270 KLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT-KQGRMEICQDAALLNGVVQKML 348 (408)
Q Consensus 270 ~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~g~i~~lv~~l~ 348 (408)
.|++++++|.++..++|+ ....+..|+..|..|+.. ...|..+. -|.+|+.+.
T Consensus 94 ~I~ea~g~plii~~lssp---------------------~e~tv~sa~~~l~~l~~~~Rt~r~ell-----~p~Vv~~v~ 147 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSP---------------------PEITVHSAALFLQLLEFGERTERDELL-----SPAVVRTVQ 147 (173)
T ss_pred HHHHhcCCceEEeecCCC---------------------hHHHHHHHHHHHHHhcCcccchhHHhc-----cHHHHHHHH
Confidence 999999999999999876 678889999999999863 33344333 345666544
Q ss_pred H
Q 036338 349 K 349 (408)
Q Consensus 349 ~ 349 (408)
|
T Consensus 148 r 148 (173)
T KOG4646|consen 148 R 148 (173)
T ss_pred H
Confidence 4
No 66
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.5e-07 Score=96.99 Aligned_cols=56 Identities=13% Similarity=0.295 Sum_probs=50.2
Q ss_pred CCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcc
Q 036338 10 VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVP 65 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~ 65 (408)
+..-++||.|..-.+|-|++.|||-||..||+..+..-...||.|+..|...|+.+
T Consensus 640 yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 640 YKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 34558999999999999999999999999999999877788999999998887755
No 67
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=2.5e-07 Score=83.84 Aligned_cols=52 Identities=15% Similarity=0.312 Sum_probs=45.2
Q ss_pred CCcccccCccccCCCceecCCCCcccHhhHHH-HHhcCCCCCCCcccccCCCC
Q 036338 11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQR-WLDSGNNTCPATMQVLQSKE 62 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~-~~~~~~~~CP~~~~~l~~~~ 62 (408)
..++.|+||.+.+.+|+-++|||.||-.||.. |-......||.||+...+.+
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 36799999999999999999999999999999 87766667999998765543
No 68
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=0.00019 Score=74.87 Aligned_cols=215 Identities=16% Similarity=0.189 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHhcC-Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338 99 QDEVKDIIRVAISK-NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED 176 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~-~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~ 176 (408)
..-++.|+.+|+.. +.+ ...|.++|..++.--|+....+++. |+||.|+.-|..-.-..+.|.++.+|-.|+. +
T Consensus 210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~-~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR---~ 285 (1051)
T KOG0168|consen 210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDE-HAIPVLLEKLLTIEYIDVAEQSLQALEKISR---R 285 (1051)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecc-cchHHHHHhhhhhhhhHHHHHHHHHHHHHHh---h
Confidence 45688999999865 456 8999999999999999999999999 9999999988765422344999999999986 4
Q ss_pred hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC--cchhhHHhhhcChHHHHHHhcccCCCHHHHHHH
Q 036338 177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD--ADSKVKIAERDGLLAETVKSLSLDSDRRLIEAS 254 (408)
Q Consensus 177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A 254 (408)
.+ +. |. ++|++...+..|..- +..+|..|..+..|+|.. .|.-..+.+ ++|.|..+|... +.+..+.+
T Consensus 286 H~--~A-iL--~AG~l~a~LsylDFF-Si~aQR~AlaiaaN~Cksi~sd~f~~v~e---alPlL~~lLs~~-D~k~ies~ 355 (1051)
T KOG0168|consen 286 HP--KA-IL--QAGALSAVLSYLDFF-SIHAQRVALAIAANCCKSIRSDEFHFVME---ALPLLTPLLSYQ-DKKPIESV 355 (1051)
T ss_pred cc--HH-HH--hcccHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccchHHHH---HHHHHHHHHhhc-cchhHHHH
Confidence 44 44 44 899999999999988 899999999999999975 344444444 599999999987 77888988
Q ss_pred HHHHHHhccC----cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHH
Q 036338 255 LSCLITISSS----KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQG 329 (408)
Q Consensus 255 ~~aL~~Ls~~----~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~ 329 (408)
+-++..++.. ++--.++...|.|....+||.-.+ ..-+..+.......|..++. ++-.
T Consensus 356 ~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~-----------------t~Ls~~~~~~vIrmls~msS~~pl~ 418 (1051)
T KOG0168|consen 356 CICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTP-----------------TILSNGTYTGVIRMLSLMSSGSPLL 418 (1051)
T ss_pred HHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCc-----------------ccccccchhHHHHHHHHHccCChHH
Confidence 8888887643 234466668999999999986410 01123444555666777765 4888
Q ss_pred HHHHHhhcCchHHHHH
Q 036338 330 RMEICQDAALLNGVVQ 345 (408)
Q Consensus 330 ~~~~~~~~g~i~~lv~ 345 (408)
++.+... +....|-.
T Consensus 419 ~~tl~k~-~I~~~L~~ 433 (1051)
T KOG0168|consen 419 FRTLLKL-DIADTLKR 433 (1051)
T ss_pred HHHHHHh-hHHHHHHH
Confidence 8877764 44443444
No 69
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.26 E-value=0.00023 Score=71.02 Aligned_cols=224 Identities=13% Similarity=0.157 Sum_probs=153.1
Q ss_pred ChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhc---cCcccHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 036338 142 GLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILK---RDQDCLNSLLLVLKQQESVDSRIESLRLLEFI 218 (408)
Q Consensus 142 G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~---~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~L 218 (408)
..+..++.+|............+..+..|.. .++.. -..+.. .+.....+++.+|..+ +.-+...|+.+|..+
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~--~~~~~-~~~f~~~~~~~~~~~~~fl~lL~~~-d~~i~~~a~~iLt~l 128 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQ--EDDTR-VKLFHDDALLKKKTWEPFFNLLNRQ-DQFIVHMSFSILAKL 128 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHH--hchHH-HHHHHHHhhccccchHHHHHHHcCC-chhHHHHHHHHHHHH
Confidence 5678889988776544455777777777765 33332 233320 1246788889999888 888999999999988
Q ss_pred hcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCC
Q 036338 219 AGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNG 298 (408)
Q Consensus 219 a~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~ 298 (408)
......+..-....-.+.-|...|+++.+...+..++.+|.+|...++.|..+.+.+++++|+.+|+..
T Consensus 129 ~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~----------- 197 (429)
T cd00256 129 ACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNA----------- 197 (429)
T ss_pred HhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhc-----------
Confidence 754321111001011344566666654456788889999999999999999999999999999999852
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHHH----------------------------
Q 036338 299 NGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKT---------------------------- 350 (408)
Q Consensus 299 ~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~~---------------------------- 350 (408)
.....++-.++-++..|+-+++....+.. .+.|+.+++.+-..
T Consensus 198 --------~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~ 268 (429)
T cd00256 198 --------TLGFQLQYQSIFCIWLLTFNPHAAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKT 268 (429)
T ss_pred --------cccHHHHHHHHHHHHHHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhh
Confidence 12567889999999999998886666655 48899988854331
Q ss_pred HHHHHHhcCcHHHHHHHHhhc--CCHHHHHHHHHHHHHHhhc
Q 036338 351 AQEAVSSSNVLTKILLLMQSN--CTPAVRQMSADLLKIFRVN 390 (408)
Q Consensus 351 ~~~~~~~~g~~~~Ll~ll~~~--~~~~~k~~A~~lL~~l~~~ 390 (408)
....|+..| +++++..|+.. ..+...+.-..+-..|.++
T Consensus 269 ~~~~mv~~~-l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~ 309 (429)
T cd00256 269 AALQMVQCK-VLKTLQSLEQRKYDDEDLTDDLKFLTEELKNS 309 (429)
T ss_pred HHHHHHHcC-hHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence 223344445 45666777543 4666777666666666663
No 70
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.23 E-value=0.00046 Score=76.18 Aligned_cols=133 Identities=14% Similarity=0.108 Sum_probs=66.4
Q ss_pred HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccc----
Q 036338 101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKI---- 174 (408)
Q Consensus 101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~---- 174 (408)
.++.|++.|.+.++. |..|+..|..+.. . ++++.|+.+|++++ +++ ..|+.+|..+....
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~-~~~~~L~~aL~D~d~~VR--~~Aa~aL~~l~~~~~~~~ 687 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP-----------P-GFGPALVAALGDGAAAVR--RAAAEGLRELVEVLPPAP 687 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------h-hHHHHHHHHHcCCCHHHH--HHHHHHHHHHHhccCchH
Confidence 345666667666666 6666666665431 1 55666666665444 233 45555554432100
Q ss_pred -------cchHHHHHHHh----ccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcc
Q 036338 175 -------EDQQHLMNLIL----KRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLS 243 (408)
Q Consensus 175 -------~~~~~~~~~i~----~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~ 243 (408)
+++..+|.... ....+-...|+..|.+. +..+|..|+.+|..+. ..+.|..++.
T Consensus 688 ~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~-d~~VR~~Av~aL~~~~--------------~~~~l~~~l~ 752 (897)
T PRK13800 688 ALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDP-DHRVRIEAVRALVSVD--------------DVESVAGAAT 752 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCC-CHHHHHHHHHHHhccc--------------CcHHHHHHhc
Confidence 11111111111 00123345566677776 7777777777776541 0123444555
Q ss_pred cCCCHHHHHHHHHHHHHhcc
Q 036338 244 LDSDRRLIEASLSCLITISS 263 (408)
Q Consensus 244 ~~~~~~~~~~A~~aL~~Ls~ 263 (408)
++ ++.++..++.+|..+..
T Consensus 753 D~-~~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 753 DE-NREVRIAVAKGLATLGA 771 (897)
T ss_pred CC-CHHHHHHHHHHHHHhcc
Confidence 54 55555555555555543
No 71
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.22 E-value=1.1e-06 Score=65.84 Aligned_cols=40 Identities=28% Similarity=0.615 Sum_probs=31.8
Q ss_pred cccCccccCCC------------cee-cCCCCcccHhhHHHHHhcCCCCCCCcc
Q 036338 15 RCPISLDVMKS------------PVS-LCTGVTYDRASIQRWLDSGNNTCPATM 55 (408)
Q Consensus 15 ~Cpi~~~~~~d------------Pv~-~~cgh~f~r~cI~~~~~~~~~~CP~~~ 55 (408)
.|+||++.|.+ |+. .+|||.|-..||++|++.+. +||.||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCCCC
Confidence 39999999944 333 47999999999999998644 899996
No 72
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.19 E-value=0.00017 Score=79.67 Aligned_cols=199 Identities=14% Similarity=0.128 Sum_probs=106.6
Q ss_pred ChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC
Q 036338 142 GLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD 221 (408)
Q Consensus 142 G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~ 221 (408)
+.++.|+..|.+++ ..+...|+.+|..+. ..++++.|+..|.+. +..+|..|+.+|..+...
T Consensus 621 ~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~----------------~~~~~~~L~~aL~D~-d~~VR~~Aa~aL~~l~~~ 682 (897)
T PRK13800 621 PSVAELAPYLADPD-PGVRRTAVAVLTETT----------------PPGFGPALVAALGDG-AAAVRRAAAEGLRELVEV 682 (897)
T ss_pred hhHHHHHHHhcCCC-HHHHHHHHHHHhhhc----------------chhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhc
Confidence 56777888887666 333377777775532 122345555566555 666666666666554211
Q ss_pred ---------------cchhhHHhh-----hcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc---------C--cchHHH
Q 036338 222 ---------------ADSKVKIAE-----RDGLLAETVKSLSLDSDRRLIEASLSCLITISS---------S--KRAKTK 270 (408)
Q Consensus 222 ---------------~~~~~~i~~-----~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~---------~--~~n~~~ 270 (408)
+..|..... ..+-...|++.|++. ++.++..|+.+|..+-. + ...|..
T Consensus 683 ~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~-d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~ 761 (897)
T PRK13800 683 LPPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDP-DHRVRIEAVRALVSVDDVESVAGAATDENREVRIA 761 (897)
T ss_pred cCchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCC-CHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHH
Confidence 001111110 012345677888886 88899999888886521 1 112322
Q ss_pred HHh---------cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHH---HHHHHhhcC
Q 036338 271 LIN---------HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQG---RMEICQDAA 338 (408)
Q Consensus 271 ~~~---------~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~---~~~~~~~~g 338 (408)
.++ .+.++.|+.++.++ ++.++..|+.+|..+-..+.. ......+.
T Consensus 762 aa~aL~~~~~~~~~~~~~L~~ll~D~---------------------d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~- 819 (897)
T PRK13800 762 VAKGLATLGAGGAPAGDAVRALTGDP---------------------DPLVRAAALAALAELGCPPDDVAAATAALRAS- 819 (897)
T ss_pred HHHHHHHhccccchhHHHHHHHhcCC---------------------CHHHHHHHHHHHHhcCCcchhHHHHHHHhcCC-
Confidence 221 11356777777653 678888888888777543211 11111110
Q ss_pred chHHHHHHHHHHHHHHHH---hcCcHHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 036338 339 LLNGVVQKMLKTAQEAVS---SSNVLTKILLLMQSNCTPAVRQMSADLLKIF 387 (408)
Q Consensus 339 ~i~~lv~~l~~~~~~~~~---~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l 387 (408)
...|+. .+.+.+. ....++.|+.+|. +.+..+|..|...|..+
T Consensus 820 --d~~VR~---~Aa~aL~~l~~~~a~~~L~~~L~-D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 820 --AWQVRQ---GAARALAGAAADVAVPALVEALT-DPHLDVRKAAVLALTRW 865 (897)
T ss_pred --ChHHHH---HHHHHHHhccccchHHHHHHHhc-CCCHHHHHHHHHHHhcc
Confidence 112221 2222222 2345677777775 44577888887777655
No 73
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=98.15 E-value=1.8e-06 Score=85.76 Aligned_cols=68 Identities=25% Similarity=0.472 Sum_probs=54.7
Q ss_pred CCCCcccccCccccCCCceec-CCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcc-cHHHHHHHHHHH
Q 036338 9 TVPSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVP-NRTLQRLIQIWS 77 (408)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~-n~~l~~~I~~~~ 77 (408)
.+.+++.||+|..+++||+.. .|||.||+.||.+|... +..||.|+..+......+ ....++.+..|.
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLP 86 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhcc
Confidence 467789999999999999995 99999999999999987 778999988876655554 344555555553
No 74
>PF05536 Neurochondrin: Neurochondrin
Probab=98.05 E-value=0.0003 Score=72.90 Aligned_cols=154 Identities=17% Similarity=0.237 Sum_probs=116.0
Q ss_pred hHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH--HHHHHHhccCcccHHHHHHHHhcCC------ChHHHHHHHHH
Q 036338 143 LVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ--HLMNLILKRDQDCLNSLLLVLKQQE------SVDSRIESLRL 214 (408)
Q Consensus 143 ~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~--~~~~~i~~~~~g~i~~Lv~lL~~~~------~~~~~~~Aa~~ 214 (408)
.+...+.+|++.+|.+ +-.++..+.++.. +++. ..++.|. ++=+.+.|-++|+++. ....+.-|..+
T Consensus 6 ~l~~c~~lL~~~~D~~-rfagL~lvtk~~~--~~~~~~~~~~~v~--~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTE-RFAGLLLVTKLLD--ADDEDSQTRRRVF--EAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred HHHHHHHHhccCCcHH-HHHHHHHHHHcCC--CchhhHHHHHHHH--HhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 3556678888777432 2556666667765 3331 1233454 6666899999998731 35567778999
Q ss_pred HHHhhcCcchh--hHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCC
Q 036338 215 LEFIAGDADSK--VKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNG 292 (408)
Q Consensus 215 L~~La~~~~~~--~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~ 292 (408)
|..++..++.. ..+. +-||.|++++....+......+..+|..++.+++.+..+++.|+|+.|.+.+.+
T Consensus 81 L~~f~~~~~~a~~~~~~---~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~------ 151 (543)
T PF05536_consen 81 LAAFCRDPELASSPQMV---SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN------ 151 (543)
T ss_pred HHHHcCChhhhcCHHHH---HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh------
Confidence 99999877643 3443 359999999988734489999999999999999999999999999999999975
Q ss_pred CCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338 293 SGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT 326 (408)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~ 326 (408)
.+...+.|+.+|.++...
T Consensus 152 ----------------~~~~~E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 152 ----------------QSFQMEIALNLLLNLLSR 169 (543)
T ss_pred ----------------CcchHHHHHHHHHHHHHh
Confidence 557789999999998763
No 75
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=5.4e-06 Score=88.19 Aligned_cols=74 Identities=32% Similarity=0.432 Sum_probs=67.9
Q ss_pred CCCCCCcccccCccccCCCceecC-CCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338 7 YITVPSFFRCPISLDVMKSPVSLC-TGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ 81 (408)
Q Consensus 7 ~~~~~~~~~Cpi~~~~~~dPv~~~-cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~ 81 (408)
..++|++|.-|+..-+|+|||++| .|++.||+.|+.++-+ ..+.|.||++++.+.+.||..++..|+.|..++.
T Consensus 864 l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~ 938 (943)
T KOG2042|consen 864 LGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEKR 938 (943)
T ss_pred hccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHhh
Confidence 346899999999999999999998 9999999999999874 5679999999999999999999999999988754
No 76
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.03 E-value=7.7e-06 Score=53.84 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=36.8
Q ss_pred CcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338 221 DADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS 263 (408)
Q Consensus 221 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~ 263 (408)
+++++..+.+ .|++|+|+++|+++ ++++++.|++||+||+.
T Consensus 1 ~~~~~~~i~~-~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVE-AGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHH-TTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHH-cccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 3567888888 89999999999987 99999999999999974
No 77
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.03 E-value=1.3e-05 Score=77.41 Aligned_cols=51 Identities=25% Similarity=0.445 Sum_probs=45.7
Q ss_pred ccccCccccCCCceecC-CCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcc
Q 036338 14 FRCPISLDVMKSPVSLC-TGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVP 65 (408)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~-cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~ 65 (408)
+.|.|++++-++||+.+ +||.|+|+-|++++.+ ..+||+++++++.+++++
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeee
Confidence 57999999999999986 9999999999999985 557999999998877766
No 78
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=3.6e-06 Score=82.62 Aligned_cols=72 Identities=24% Similarity=0.339 Sum_probs=55.6
Q ss_pred CCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCC-----CcccHHHHHHHHHHHHh
Q 036338 7 YITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKE-----FVPNRTLQRLIQIWSDS 79 (408)
Q Consensus 7 ~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~-----l~~n~~l~~~I~~~~~~ 79 (408)
...++.+|-|.||...+-+||+++|||+||..||.+... ....||.|+.++.... ..+|+.+...|..|+..
T Consensus 78 ~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld-~~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 78 PEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLD-QETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred CccccchhhhhhhHhhcCCCccccccccccHHHHHHHhc-cCCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 345688999999999999999999999999999999766 4567999998875411 22355666777766543
No 79
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.00 E-value=9.4e-06 Score=53.43 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=37.1
Q ss_pred CcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 264 SKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 264 ~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
+++++..+++.|+||+|+.+|.++ +..+++.|+++|.||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~---------------------~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSP---------------------DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSS---------------------SHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCC---------------------CHHHHHHHHHHHHHHhC
Confidence 357899999999999999999865 89999999999999974
No 80
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.00057 Score=73.79 Aligned_cols=211 Identities=10% Similarity=0.125 Sum_probs=136.7
Q ss_pred HHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH
Q 036338 100 DEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ 178 (408)
Q Consensus 100 ~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~ 178 (408)
-..+.+-..++|.+-. |..|+.+|..++.+..+.-... .+.+++.++..|.++. ++++-.|+.+++.++.. =.+
T Consensus 348 ~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~--l~~Il~~Vl~~l~Dph-prVr~AA~naigQ~std--l~p 422 (1075)
T KOG2171|consen 348 PLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGN--LPKILPIVLNGLNDPH-PRVRYAALNAIGQMSTD--LQP 422 (1075)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHH--HHHHHHHHHhhcCCCC-HHHHHHHHHHHHhhhhh--hcH
Confidence 3445556677887766 9999999999998866554443 3367788888888776 55669999999999862 112
Q ss_pred HHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHH
Q 036338 179 HLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCL 258 (408)
Q Consensus 179 ~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL 258 (408)
.+.+.- ..-.++.|+..+.+..+..++.+|+.+|.|++.........---.+.+.+++.+|.....+.+++.++.||
T Consensus 423 ~iqk~~---~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaI 499 (1075)
T KOG2171|consen 423 EIQKKH---HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAI 499 (1075)
T ss_pred HHHHHH---HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 222322 34557788888887658899999999999998776543333222345554444555444889999999999
Q ss_pred HHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhh
Q 036338 259 ITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQD 336 (408)
Q Consensus 259 ~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 336 (408)
...+...+..-.=-=.-.+|.|...|.+. . ..+...++.+....+..++. .-|++++...
T Consensus 500 asvA~AA~~~F~pY~d~~Mp~L~~~L~n~-----~------------~~d~r~LrgktmEcisli~~-AVGke~F~~~ 559 (1075)
T KOG2171|consen 500 ASVADAAQEKFIPYFDRLMPLLKNFLQNA-----D------------DKDLRELRGKTMECLSLIAR-AVGKEKFLPL 559 (1075)
T ss_pred HHHHHHHhhhhHhHHHHHHHHHHHHHhCC-----C------------chhhHHHHhhHHHHHHHHHH-HhhhhhhhHh
Confidence 99987543222111234678888888753 0 01234555555444444433 4566666543
No 81
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=4.6e-06 Score=76.98 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=43.0
Q ss_pred cccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCC
Q 036338 15 RCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSK 61 (408)
Q Consensus 15 ~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~ 61 (408)
-|+||+.-+.-||.+.|+|.||..||+--.+++..+||.|+.+++++
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 49999999999999999999999999997777788899999998764
No 82
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.91 E-value=0.00012 Score=60.43 Aligned_cols=131 Identities=15% Similarity=0.082 Sum_probs=103.1
Q ss_pred ChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC
Q 036338 142 GLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD 221 (408)
Q Consensus 142 G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~ 221 (408)
+.+..||.=.....+.+.++..++-|.|++. +..| -..+. +..++..++.-|... +....+.+...|.|+|.+
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY--DP~N--ys~Lr--ql~vLdlFvdsl~e~-ne~LvefgIgglCNlC~d 88 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY--DPIN--YSHLR--QLDVLDLFVDSLEEQ-NELLVEFGIGGLCNLCLD 88 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc--Ccch--HHHHH--HhhHHHHHHHHhhcc-cHHHHHHhHHHHHhhccC
Confidence 4556666666555545556889999999987 3444 45555 788999999999998 999999999999999999
Q ss_pred cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc-hHHHHHhcCcHHHHHHHhc
Q 036338 222 ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR-AKTKLINHKLITELGKLIT 285 (408)
Q Consensus 222 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~-n~~~~~~~G~i~~Lv~lL~ 285 (408)
..+++.|.+ .+++|..+..+.++ .......|+.+|.-|+.... .|..+.. |+.|+.+.
T Consensus 89 ~~n~~~I~e-a~g~plii~~lssp-~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v~ 147 (173)
T KOG4646|consen 89 KTNAKFIRE-ALGLPLIIFVLSSP-PEITVHSAALFLQLLEFGERTERDELLS----PAVVRTVQ 147 (173)
T ss_pred hHHHHHHHH-hcCCceEEeecCCC-hHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHHH
Confidence 999999998 88999999999987 77888999999999998765 4444433 44555543
No 83
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.82 E-value=0.00012 Score=56.46 Aligned_cols=87 Identities=22% Similarity=0.273 Sum_probs=69.1
Q ss_pred HHHHHHHH-hcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHH
Q 036338 192 LNSLLLVL-KQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTK 270 (408)
Q Consensus 192 i~~Lv~lL-~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~ 270 (408)
|+.|++.| ++. +..+|..|+.+|.++ .. ..+++.|+.+++++ ++.++..|+.+|..+-
T Consensus 1 i~~L~~~l~~~~-~~~vr~~a~~~L~~~----------~~-~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~-------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDP-DPQVRAEAARALGEL----------GD-PEAIPALIELLKDE-DPMVRRAAARALGRIG-------- 59 (88)
T ss_dssp HHHHHHHHHTSS-SHHHHHHHHHHHHCC----------TH-HHHHHHHHHHHTSS-SHHHHHHHHHHHHCCH--------
T ss_pred CHHHHHHHhcCC-CHHHHHHHHHHHHHc----------CC-HhHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--------
Confidence 67899999 666 999999999998833 22 35699999999886 9999999999999883
Q ss_pred HHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHH
Q 036338 271 LINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVE 321 (408)
Q Consensus 271 ~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~ 321 (408)
...+++.|.+++.++ .+..++..|+.+|.
T Consensus 60 --~~~~~~~L~~~l~~~--------------------~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDD--------------------DDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC---------------------SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCC--------------------CcHHHHHHHHhhcC
Confidence 344899999999863 35566788877763
No 84
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.0035 Score=65.38 Aligned_cols=234 Identities=18% Similarity=0.216 Sum_probs=161.9
Q ss_pred HHHHHHHHHhcC--Chh-HHHHHHHHHHHhhhCh----------------hhhhhhhhcCChHHHHHHHhhcCc-chhhH
Q 036338 101 EVKDIIRVAISK--NED-FSENLTKIVAFAKESD----------------ENKTFLAKFDGLVVMLVEILSNVN-DVNML 160 (408)
Q Consensus 101 ~i~~Lv~~L~s~--~~~-~~~Al~~L~~la~~~~----------------~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~ 160 (408)
..+.++..|+.+ +++ -..++..+..+....+ ...+.+++..+.|..|+.++...+ .++
T Consensus 62 Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR-- 139 (970)
T KOG0946|consen 62 GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVR-- 139 (970)
T ss_pred ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhh--
Confidence 345677777765 455 6678888888865432 123445555589999999998776 555
Q ss_pred HHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHH
Q 036338 161 KQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVK 240 (408)
Q Consensus 161 e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~ 240 (408)
..++..|.++.. .....++..+. ..+.+|..|+.+|+.. ..-+|-.|...|..|..+...-..++.-..+++.|..
T Consensus 140 ~~aIqLlsalls--~r~~e~q~~ll-~~P~gIS~lmdlL~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfs 215 (970)
T KOG0946|consen 140 LYAIQLLSALLS--CRPTELQDALL-VSPMGISKLMDLLRDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFS 215 (970)
T ss_pred hHHHHHHHHHHh--cCCHHHHHHHH-HCchhHHHHHHHHhhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHH
Confidence 888888888765 33333455442 3788999999999987 7788888999999999988877777766789999999
Q ss_pred hcccCC---CHHHHHHHHHHHHHhccC-cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHH
Q 036338 241 SLSLDS---DRRLIEASLSCLITISSS-KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKA 316 (408)
Q Consensus 241 lL~~~~---~~~~~~~A~~aL~~Ls~~-~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 316 (408)
+++... ..-+.+.++..|.||-.+ ..|...+.+.+.||.|..+|..+.-|.|.+-+ =+.........|
T Consensus 216 IIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~--------W~~Qrv~Nv~~~ 287 (970)
T KOG0946|consen 216 IIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFG--------WSTQRVQNVIEA 287 (970)
T ss_pred HHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCccccc--------ccHHHHHHHHHH
Confidence 998642 225789999999999885 45888888999999999999875222110000 000122344677
Q ss_pred HHHHHHHhC--C-----HHHHHHHHhhcCchHHHHHHHHH
Q 036338 317 LRLVEILST--T-----KQGRMEICQDAALLNGVVQKMLK 349 (408)
Q Consensus 317 ~~~L~~L~~--~-----~~~~~~~~~~~g~i~~lv~~l~~ 349 (408)
+.+++.|.. . ..+++.+... +++..|-..++.
T Consensus 288 Lqivr~lVsP~Nt~~~~~q~qk~l~ss-~ll~~Lc~il~~ 326 (970)
T KOG0946|consen 288 LQIVRSLVSPGNTSSITHQNQKALVSS-HLLDVLCTILMH 326 (970)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHc-chHHHHHHHHcC
Confidence 788888765 1 2233444443 666666665554
No 85
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.79 E-value=1e-05 Score=70.04 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=37.7
Q ss_pred ccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCccccc
Q 036338 14 FRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVL 58 (408)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l 58 (408)
|.|-||.+-++.||++.|||.||..|-.+-... ...|-+|++..
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t 240 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKAT 240 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhh
Confidence 899999999999999999999999997765553 45699998753
No 86
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1.3e-05 Score=73.98 Aligned_cols=55 Identities=18% Similarity=0.249 Sum_probs=42.6
Q ss_pred ccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHH
Q 036338 14 FRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQ 70 (408)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~ 70 (408)
|-|-||.+.|.+||+..|||+||..|-..-+.. ...|++|++... ..+.+...|.
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~-g~~~~akeL~ 296 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTH-GSFNVAKELL 296 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhcccccc-CCcceecccccc-cccchHHHHH
Confidence 679999999999999999999999998777664 356999998642 2333444443
No 87
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.0014 Score=65.57 Aligned_cols=240 Identities=12% Similarity=0.083 Sum_probs=169.0
Q ss_pred HHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHH
Q 036338 118 ENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLL 197 (408)
Q Consensus 118 ~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~ 197 (408)
.++..|..+++.--..|.-+.+. .++++|+.+|+.++ ..+.-.++..+.|+.. .=++ ++..+. ..|+|..|+.
T Consensus 408 a~~l~LkS~SrSV~~LRTgL~d~-~I~elLi~~Ls~Pe-imi~~~~t~~icn~vv--~fsn-L~~~fL--~~~iIdvl~~ 480 (743)
T COG5369 408 AIVLFLKSMSRSVTFLRTGLLDY-PIVELLIDALSNPE-IMIEFPDTIDICNKVV--PFSN-LGAGFL--EKSIIDVLVN 480 (743)
T ss_pred HHHHHHHHhhHHHHHHHhhcccc-chHHHHHHHhcCcc-ceeeccchhhhhheee--eccc-hHHHHH--HhhHHHHHHH
Confidence 34455666665545567778888 89999999999876 2222556677777765 2233 356565 8899999999
Q ss_pred HHhcCCChHHHHHHHHHHHHhhcCcchh--hHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCc-ch---HH--
Q 036338 198 VLKQQESVDSRIESLRLLEFIAGDADSK--VKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSK-RA---KT-- 269 (408)
Q Consensus 198 lL~~~~~~~~~~~Aa~~L~~La~~~~~~--~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~-~n---~~-- 269 (408)
++.+. +...|.+..|+|..+-.+.++. ..... .-++..++.+..++ .-.+++..+..|+|+.-+. .| +.
T Consensus 481 ~v~sK-DdaLqans~wvlrHlmyncq~~ekf~~La-kig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEkskdv~ 557 (743)
T COG5369 481 LVMSK-DDALQANSEWVLRHLMYNCQKNEKFKFLA-KIGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSKDVF 557 (743)
T ss_pred Hhhcc-hhhhhhcchhhhhhhhhcCcchhhhhhHH-hcCHHHHHHHhcCc-ccccHHHHHHHHHhcccccccccccceeE
Confidence 99988 8899999999999998776544 23333 33578899999887 7889999999999985522 22 11
Q ss_pred -HHHh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhh-cCchHHHHHH
Q 036338 270 -KLIN-HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQD-AALLNGVVQK 346 (408)
Q Consensus 270 -~~~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~-~g~i~~lv~~ 346 (408)
++.- .=....|++.+.+- .+...+..+.+|.+++.++++...++.. ...+..+-+.
T Consensus 558 ~K~~p~~ylfk~l~~k~e~~---------------------np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~ei 616 (743)
T COG5369 558 IKATPRRYLFKRLIDKYEEN---------------------NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEI 616 (743)
T ss_pred EecChHHHHHHHHHHHHHhc---------------------CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHH
Confidence 1111 11445677777653 5566666789999998888888777753 3444444443
Q ss_pred HHH-----------------------------------------------------------------------------
Q 036338 347 MLK----------------------------------------------------------------------------- 349 (408)
Q Consensus 347 l~~----------------------------------------------------------------------------- 349 (408)
|..
T Consensus 617 l~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~ 696 (743)
T COG5369 617 LDEFAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSE 696 (743)
T ss_pred HHHHcccCCCCCCCCcccccCccceeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCc
Confidence 333
Q ss_pred ---H--HHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036338 350 ---T--AQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFR 388 (408)
Q Consensus 350 ---~--~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~ 388 (408)
+ -+-.+..+.|+..++..+|.+.++.+|+++..+|..++
T Consensus 697 vtratveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l~ 740 (743)
T COG5369 697 VTRATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENLR 740 (743)
T ss_pred cchhhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhhh
Confidence 1 22234567889999999999999999999999998775
No 88
>PF05536 Neurochondrin: Neurochondrin
Probab=97.76 E-value=0.0017 Score=67.48 Aligned_cols=156 Identities=15% Similarity=0.162 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhh---hhhhhhcCChHHHHHHHhhcCc------chhhHHHHHHHHH
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDEN---KTFLAKFDGLVVMLVEILSNVN------DVNMLKQVIRVLD 168 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~---r~~i~~~~G~i~~Lv~lL~s~~------~~~~~e~A~~~L~ 168 (408)
...+...+..|++.+.+ |..++--+..+.+.++.. ++.|.++ =+...|-++|.++. ....+.-|+.+|.
T Consensus 4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~a-ig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEA-IGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHh-cChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 45678888999988744 889999999998876643 4457777 45799999998844 1224567888999
Q ss_pred HhcccccchHH-HHHHHhccCcccHHHHHHHHhcCCCh-HHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCC
Q 036338 169 LILNKIEDQQH-LMNLILKRDQDCLNSLLLVLKQQESV-DSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDS 246 (408)
Q Consensus 169 ~L~~~~~~~~~-~~~~i~~~~~g~i~~Lv~lL~~~~~~-~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~ 246 (408)
.++. +++- ....+. +.||.|++.+.++ +. ++...+..+|..++..++++..+.. .|+++.|++.+.+
T Consensus 83 ~f~~---~~~~a~~~~~~----~~IP~Lle~l~~~-s~~~~v~dalqcL~~Ias~~~G~~aLl~-~g~v~~L~ei~~~-- 151 (543)
T PF05536_consen 83 AFCR---DPELASSPQMV----SRIPLLLEILSSS-SDLETVDDALQCLLAIASSPEGAKALLE-SGAVPALCEIIPN-- 151 (543)
T ss_pred HHcC---ChhhhcCHHHH----HHHHHHHHHHHcC-CchhHHHHHHHHHHHHHcCcHhHHHHHh-cCCHHHHHHHHHh--
Confidence 8886 3331 012222 6799999999988 55 9999999999999999999999998 8999999999987
Q ss_pred CHHHHHHHHHHHHHhccCcc
Q 036338 247 DRRLIEASLSCLITISSSKR 266 (408)
Q Consensus 247 ~~~~~~~A~~aL~~Ls~~~~ 266 (408)
.+...+.|+.+|.+++....
T Consensus 152 ~~~~~E~Al~lL~~Lls~~~ 171 (543)
T PF05536_consen 152 QSFQMEIALNLLLNLLSRLG 171 (543)
T ss_pred CcchHHHHHHHHHHHHHhcc
Confidence 45788999999999876443
No 89
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.72 E-value=0.0024 Score=65.34 Aligned_cols=120 Identities=16% Similarity=0.096 Sum_probs=96.2
Q ss_pred CcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc
Q 036338 188 DQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD-ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR 266 (408)
Q Consensus 188 ~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~ 266 (408)
...++.+||.+|..+ +..++..+..+|.|+... .+.|..+.. .|+|+.|.+++.+. ++..+..++|+|+++..+.+
T Consensus 417 ~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~-~ngId~l~s~~~~~-~~n~r~~~~~~Lr~l~f~~d 493 (678)
T KOG1293|consen 417 RNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLR-NNGIDILESMLTDP-DFNSRANSLWVLRHLMFNCD 493 (678)
T ss_pred cchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHH-cCcHHHHHHHhcCC-CchHHHHHHHHHHHHHhcch
Confidence 567899999999888 889999999999999875 467777777 79999999999997 88999999999999999877
Q ss_pred hHHHHH-hcCcHH-HHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC-HHHHH
Q 036338 267 AKTKLI-NHKLIT-ELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT-KQGRM 331 (408)
Q Consensus 267 n~~~~~-~~G~i~-~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~ 331 (408)
+..+.. -+..-. -++.+..+ ++..++|.+...|+||..+ .+.-.
T Consensus 494 e~~k~~~~~ki~a~~i~~l~nd---------------------~d~~Vqeq~fqllRNl~c~~~~svd 540 (678)
T KOG1293|consen 494 EEEKFQLLAKIPANLILDLIND---------------------PDWAVQEQCFQLLRNLTCNSRKSVD 540 (678)
T ss_pred HHHHHHHHHHhhHHHHHHHHhC---------------------CCHHHHHHHHHHHHHhhcCcHHHHH
Confidence 655444 333333 45555554 4999999999999999754 34333
No 90
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.71 E-value=3.5e-05 Score=58.37 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=35.6
Q ss_pred ccccCccccCCC-ceec-CCCCcccHhhHHHHHhcC--CCCCCCcccccC
Q 036338 14 FRCPISLDVMKS-PVSL-CTGVTYDRASIQRWLDSG--NNTCPATMQVLQ 59 (408)
Q Consensus 14 ~~Cpi~~~~~~d-Pv~~-~cgh~f~r~cI~~~~~~~--~~~CP~~~~~l~ 59 (408)
-.||.|...-.| |++. .|||.|-..||.+|+++. ...||.||++..
T Consensus 33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 346666555555 7766 699999999999999863 468999998764
No 91
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=0.0079 Score=56.56 Aligned_cols=256 Identities=12% Similarity=0.124 Sum_probs=161.9
Q ss_pred HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH
Q 036338 101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH 179 (408)
Q Consensus 101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~ 179 (408)
....+++.+++.++. +..|+..+..+... ..+.......-.++.+..++..... .+.|+.+|.|++. +..
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~---~~~a~~alVnlsq---~~~- 74 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP---AEPAATALVNLSQ---KEE- 74 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc---ccHHHHHHHHHHh---hHH-
Confidence 355788999999988 88899888888765 4444444332567778888876552 3789999999985 333
Q ss_pred HHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhh--h----cChHHHHHHhcccCCC-HHHHH
Q 036338 180 LMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAE--R----DGLLAETVKSLSLDSD-RRLIE 252 (408)
Q Consensus 180 ~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~--~----~g~i~~Lv~lL~~~~~-~~~~~ 252 (408)
+++.+. +. .+..++..+.+. ....-...+.+|.||+..++....+.. . .|.+...+.+...+.+ ..-..
T Consensus 75 l~~~ll--~~-~~k~l~~~~~~p-~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ 150 (353)
T KOG2973|consen 75 LRKKLL--QD-LLKVLMDMLTDP-QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFH 150 (353)
T ss_pred HHHHHH--HH-HHHHHHHHhcCc-ccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchh
Confidence 355554 33 788888888776 556667788899999998875555432 1 3445544445544322 13445
Q ss_pred HHHHHHHHhccCcchHHHHHhcCcHHHHHHH-hccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHH
Q 036338 253 ASLSCLITISSSKRAKTKLINHKLITELGKL-ITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRM 331 (408)
Q Consensus 253 ~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~l-L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 331 (408)
.-+-.+.||++....|..+.+...+|.=.-+ +.++ ++..=+.-.+++|.|.|-....+.
T Consensus 151 ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~--------------------~s~vRr~GvagtlkN~cFd~~~h~ 210 (353)
T KOG2973|consen 151 YLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSE--------------------DSQVRRGGVAGTLKNCCFDAKLHE 210 (353)
T ss_pred HHHHHHHHHhhhhhhhhHhcchhhhhHhhhhccccc--------------------chhhhccchHHHHHhhhccchhHH
Confidence 6677888999999999888866544322222 2221 111223455678888777666666
Q ss_pred HHHhhc-CchHHHHHHHHH---------------------------------------------HHHHHHHhcCcHHHHH
Q 036338 332 EICQDA-ALLNGVVQKMLK---------------------------------------------TAQEAVSSSNVLTKIL 365 (408)
Q Consensus 332 ~~~~~~-g~i~~lv~~l~~---------------------------------------------~~~~~~~~~g~~~~Ll 365 (408)
.+.... ..+|.++--|.. ..-+++++.-++.+++
T Consensus 211 ~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpil 290 (353)
T KOG2973|consen 211 VLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPIL 290 (353)
T ss_pred HHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHH
Confidence 665421 233333322211 2333344444456666
Q ss_pred HHHhh-cCCHHHHHHHHHHHHHHhh
Q 036338 366 LLMQS-NCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 366 ~ll~~-~~~~~~k~~A~~lL~~l~~ 389 (408)
..+.. ...+..++++-.+..++..
T Consensus 291 RElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 291 RELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 77754 5678899999888888776
No 92
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=5.6e-05 Score=76.24 Aligned_cols=75 Identities=29% Similarity=0.371 Sum_probs=67.5
Q ss_pred cCCCCCCcccccCccccCCCceecC-CCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338 6 LYITVPSFFRCPISLDVMKSPVSLC-TGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ 81 (408)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dPv~~~-cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~ 81 (408)
..-++|++|.-|+...+|+|||+++ +|-+.+|+.|...+-. ..+.|.-|.|++.++.+||-.||+.|-.|....+
T Consensus 847 D~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~ 922 (929)
T COG5113 847 DMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCKG 922 (929)
T ss_pred hccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhccc
Confidence 4557999999999999999999997 8999999999998774 4579999999999999999999999999977655
No 93
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.68 E-value=0.0035 Score=64.96 Aligned_cols=210 Identities=19% Similarity=0.160 Sum_probs=136.2
Q ss_pred cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccCHHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCC
Q 036338 64 VPNRTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDG 142 (408)
Q Consensus 64 ~~n~~l~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G 142 (408)
..|+.+|++.--+...-...-+. . ..-.+..+.+.|.++++. +..|++.|.++.. ++... -
T Consensus 53 s~~~~~Krl~yl~l~~~~~~~~~----~------~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~------~ 114 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYLHEDPE----L------LILIINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAE------P 114 (526)
T ss_dssp SSSHHHHHHHHHHHHHHTTTSHH----H------HHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHH------H
T ss_pred CCCHHHHHHHHHHHHHHhhcchh----H------HHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhh------H
Confidence 56677777766555543210000 0 022456777888888877 8889999998863 33332 3
Q ss_pred hHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc
Q 036338 143 LVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA 222 (408)
Q Consensus 143 ~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~ 222 (408)
.++.+..+|.++. .-++..|+.++..+.. .+++ .+. .. .++.+..+|.+. +..++..|+.++..+..++
T Consensus 115 l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~--~~p~----~~~--~~-~~~~l~~lL~d~-~~~V~~~a~~~l~~i~~~~ 183 (526)
T PF01602_consen 115 LIPDVIKLLSDPS-PYVRKKAALALLKIYR--KDPD----LVE--DE-LIPKLKQLLSDK-DPSVVSAALSLLSEIKCND 183 (526)
T ss_dssp HHHHHHHHHHSSS-HHHHHHHHHHHHHHHH--HCHC----CHH--GG-HHHHHHHHTTHS-SHHHHHHHHHHHHHHHCTH
T ss_pred HHHHHHHHhcCCc-hHHHHHHHHHHHHHhc--cCHH----HHH--HH-HHHHHhhhccCC-cchhHHHHHHHHHHHccCc
Confidence 4666888888776 3344889888888875 2222 232 33 789999999888 9999999999999992222
Q ss_pred chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCC
Q 036338 223 DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNG 302 (408)
Q Consensus 223 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~ 302 (408)
+.-..+. ...+..|.+++... ++-.+...++.|..++........- ...++.+..+|++.
T Consensus 184 ~~~~~~~--~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~--------------- 243 (526)
T PF01602_consen 184 DSYKSLI--PKLIRILCQLLSDP-DPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSS--------------- 243 (526)
T ss_dssp HHHTTHH--HHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHH---------------
T ss_pred chhhhhH--HHHHHHhhhccccc-chHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhcc---------------
Confidence 2111221 23566666666665 8888888889888888754422211 45677777777753
Q ss_pred CCCCCCCcchHHHHHHHHHHHhCCHH
Q 036338 303 NGSGNGTVLITEKALRLVEILSTTKQ 328 (408)
Q Consensus 303 ~~~~~~~~~~~~~a~~~L~~L~~~~~ 328 (408)
++.+.-.+..++..+...+.
T Consensus 244 ------~~~V~~e~~~~i~~l~~~~~ 263 (526)
T PF01602_consen 244 ------SPSVVYEAIRLIIKLSPSPE 263 (526)
T ss_dssp ------HHHHHHHHHHHHHHHSSSHH
T ss_pred ------ccHHHHHHHHHHHHhhcchH
Confidence 66777777777777776655
No 94
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.62 E-value=0.0033 Score=64.36 Aligned_cols=148 Identities=16% Similarity=0.192 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHH
Q 036338 116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSL 195 (408)
Q Consensus 116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~L 195 (408)
..+|+-.+..++..-...|.-+... .++.+||.+|..++ ..+...++++|.|+.. +-...|..+. ..|+|..+
T Consensus 394 ~aaa~l~~~s~srsV~aL~tg~~~~-dv~~plvqll~dp~-~~i~~~~lgai~NlVm---efs~~kskfl--~~ngId~l 466 (678)
T KOG1293|consen 394 VAAALLCLKSFSRSVSALRTGLKRN-DVAQPLVQLLMDPE-IMIMGITLGAICNLVM---EFSNLKSKFL--RNNGIDIL 466 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccc-hhHHHHHHHhhCcc-hhHHHHHHHHHHHHHh---hcccHHHHHH--HcCcHHHH
Confidence 5566777777766555666667777 89999999997666 3344889999999986 2222355555 89999999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcC-hHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc-hHHHHH
Q 036338 196 LLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDG-LLAETVKSLSLDSDRRLIEASLSCLITISSSKR-AKTKLI 272 (408)
Q Consensus 196 v~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g-~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~-n~~~~~ 272 (408)
...+.+. +..+|..+.|+|.++..+.+......--.. ....++.+..++ +..+++.+...|+||.-+.. ....++
T Consensus 467 ~s~~~~~-~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~-d~~Vqeq~fqllRNl~c~~~~svdfll 543 (678)
T KOG1293|consen 467 ESMLTDP-DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP-DWAVQEQCFQLLRNLTCNSRKSVDFLL 543 (678)
T ss_pred HHHhcCC-CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC-CHHHHHHHHHHHHHhhcCcHHHHHHHH
Confidence 9999998 999999999999999988776555442122 234566667776 99999999999999976643 333344
No 95
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.0039 Score=67.56 Aligned_cols=211 Identities=11% Similarity=0.144 Sum_probs=130.0
Q ss_pred HHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc
Q 036338 144 VVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA 222 (408)
Q Consensus 144 i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~ 222 (408)
.+.+-.+|.|.+ ..+ ..|+.+|..++. +....++..+ ..+++.++..|+.+ ++.+|..|+.+|+.++.+-
T Consensus 350 ~~~l~~~l~S~~w~~R--~AaL~Als~i~E--Gc~~~m~~~l----~~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 350 FEALEAMLQSTEWKER--HAALLALSVIAE--GCSDVMIGNL----PKILPIVLNGLNDP-HPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred HHHHHHHhcCCCHHHH--HHHHHHHHHHHc--ccHHHHHHHH----HHHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhh
Confidence 344555556665 444 788888888875 4444333322 46778888888888 9999999999999999863
Q ss_pred --chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHH--hcCcHHHHHHHhccCCCCCCCCCCCC
Q 036338 223 --DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLI--NHKLITELGKLITDGHNGNGSGNGNG 298 (408)
Q Consensus 223 --~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~--~~G~i~~Lv~lL~~~~~~~~~~~~~~ 298 (408)
+....-. .-.++.|+..+.+..+++++..|+.||.|++..-.. ..+. =.+.+..++.+|..
T Consensus 421 ~p~iqk~~~--e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~-~~l~pYLd~lm~~~l~~L~~------------ 485 (1075)
T KOG2171|consen 421 QPEIQKKHH--ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK-SILEPYLDGLMEKKLLLLLQ------------ 485 (1075)
T ss_pred cHHHHHHHH--HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHhc------------
Confidence 3333332 356778999998877889999999999999875331 1111 23455534444443
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHHhCC-HHHHHHHHhhcCchHHHHHHHHHHHHHH--HHhcCcHHHHHHHH-hhcCCH
Q 036338 299 NGNGNGSGNGTVLITEKALRLVEILSTT-KQGRMEICQDAALLNGVVQKMLKTAQEA--VSSSNVLTKILLLM-QSNCTP 374 (408)
Q Consensus 299 ~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~g~i~~lv~~l~~~~~~~--~~~~g~~~~Ll~ll-~~~~~~ 374 (408)
++.+.+++.++.++...|.. .+....... ..+|.|.+.|.+...++ .++...+.-+ .++ ..-+.+
T Consensus 486 --------~~~~~v~e~vvtaIasvA~AA~~~F~pY~d--~~Mp~L~~~L~n~~~~d~r~LrgktmEci-sli~~AVGke 554 (1075)
T KOG2171|consen 486 --------SSKPYVQEQAVTAIASVADAAQEKFIPYFD--RLMPLLKNFLQNADDKDLRELRGKTMECL-SLIARAVGKE 554 (1075)
T ss_pred --------CCchhHHHHHHHHHHHHHHHHhhhhHhHHH--HHHHHHHHHHhCCCchhhHHHHhhHHHHH-HHHHHHhhhh
Confidence 34889999999999999863 222222322 45666666554411011 1111111111 222 223445
Q ss_pred HHHHHHHHHHHHHhh
Q 036338 375 AVRQMSADLLKIFRV 389 (408)
Q Consensus 375 ~~k~~A~~lL~~l~~ 389 (408)
+-.+-|..++.++..
T Consensus 555 ~F~~~a~eliqll~~ 569 (1075)
T KOG2171|consen 555 KFLPLAEELIQLLLE 569 (1075)
T ss_pred hhhHhHHHHHHHHHh
Confidence 566667777777666
No 96
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.61 E-value=0.0039 Score=61.51 Aligned_cols=183 Identities=16% Similarity=0.181 Sum_probs=131.5
Q ss_pred hhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHH
Q 036338 132 ENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIE 210 (408)
Q Consensus 132 ~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~ 210 (408)
...+.|..- |++..|++++.++. ..++.-++...|-.+.. ..| +..++ ..| +..++.+-+....++....
T Consensus 171 ~LCD~iR~~-~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~---aeN--~d~va--~~~-~~~Il~lAK~~e~~e~aR~ 241 (832)
T KOG3678|consen 171 GLCDAIRLD-GGLDLLLRMFQAPNLETSVRVEAARLLEQILV---AEN--RDRVA--RIG-LGVILNLAKEREPVELARS 241 (832)
T ss_pred hhhhHhhcc-chHHHHHHHHhCCchhHHHHHHHHHHHHHHHh---hhh--hhHHh--hcc-chhhhhhhhhcCcHHHHHH
Confidence 345667776 99999999999988 55556788888887764 334 55554 333 4444444443337888899
Q ss_pred HHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCc--chHHHHHhcCcHHHHHHHhccC
Q 036338 211 SLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSK--RAKTKLINHKLITELGKLITDG 287 (408)
Q Consensus 211 Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~--~n~~~~~~~G~i~~Lv~lL~~~ 287 (408)
.+.+|.+|-.+. +.+..+.. .|++..++-..+.. +|...+.++-||.|...+. ..+.+|++..+-.-|.-|-.+.
T Consensus 242 ~~~il~~mFKHSeet~~~Lva-a~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk 319 (832)
T KOG3678|consen 242 VAGILEHMFKHSEETCQRLVA-AGGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK 319 (832)
T ss_pred HHHHHHHHhhhhHHHHHHHHh-hcccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch
Confidence 999999998764 57777777 78899888888775 8999999999999988754 5788999887777777666543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHH
Q 036338 288 HNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKML 348 (408)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~ 348 (408)
|....-.|+-+...|+...+--..+..+ |.+. ||+-++
T Consensus 320 ---------------------Del~R~~AClAV~vlat~KE~E~~VrkS-~Tla-LVEPlv 357 (832)
T KOG3678|consen 320 ---------------------DELLRLHACLAVAVLATNKEVEREVRKS-GTLA-LVEPLV 357 (832)
T ss_pred ---------------------HHHHHHHHHHHHhhhhhhhhhhHHHhhc-cchh-hhhhhh
Confidence 7778888888888888765544444333 4333 444443
No 97
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=4.4e-05 Score=73.22 Aligned_cols=46 Identities=20% Similarity=0.380 Sum_probs=39.9
Q ss_pred ccccCccccCCC---ceecCCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338 14 FRCPISLDVMKS---PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 14 ~~Cpi~~~~~~d---Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
++|-||+|-|.. =+++||+|.|=..||..|+......||+|++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 599999999987 4568999999999999999877667999998643
No 98
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=8.3e-05 Score=67.94 Aligned_cols=48 Identities=21% Similarity=0.184 Sum_probs=40.4
Q ss_pred CCcccccCccccCCCceec-CCCCcccHhhHHHHHhc-CCCCCCCccccc
Q 036338 11 PSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDS-GNNTCPATMQVL 58 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~-~~~~CP~~~~~l 58 (408)
..+..||+|++.-..|.++ +|||.||.-||..-+.. -..+||.|+.+.
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENV 286 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCC
Confidence 4567899999999999988 59999999999986543 367899999764
No 99
>PTZ00429 beta-adaptin; Provisional
Probab=97.51 E-value=0.033 Score=59.81 Aligned_cols=177 Identities=14% Similarity=0.115 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
.+.+..|-+.|.+.+.. +.++++.+-.........- -+.+.++.++.+.+ .+...-.--.|.+++. .+.
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS-------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~--~~p 100 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVS-------YLFVDVVKLAPSTD-LELKKLVYLYVLSTAR--LQP 100 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCch-------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcc--cCh
Confidence 45677777888887766 8889987766653332222 34555677777766 2222444445555554 232
Q ss_pred HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC 257 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a 257 (408)
+ ..++ ++..|.+=+.+. ++..|..|.+.|..+-. ..+.+ -.++++.+.|.+. ++-+|+.|+-+
T Consensus 101 e--lalL------aINtl~KDl~d~-Np~IRaLALRtLs~Ir~-----~~i~e--~l~~~lkk~L~D~-~pYVRKtAala 163 (746)
T PTZ00429 101 E--KALL------AVNTFLQDTTNS-SPVVRALAVRTMMCIRV-----SSVLE--YTLEPLRRAVADP-DPYVRKTAAMG 163 (746)
T ss_pred H--HHHH------HHHHHHHHcCCC-CHHHHHHHHHHHHcCCc-----HHHHH--HHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 2 1223 377777777888 88899888888777652 22332 3567788888886 89999999999
Q ss_pred HHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 258 LITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 258 L~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
+..+-.... ..+.+.|.++.|.++|.+. ++.++..|+.+|..+..
T Consensus 164 i~Kly~~~p--elv~~~~~~~~L~~LL~D~---------------------dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 164 LGKLFHDDM--QLFYQQDFKKDLVELLNDN---------------------NPVVASNAAAIVCEVND 208 (746)
T ss_pred HHHHHhhCc--ccccccchHHHHHHHhcCC---------------------CccHHHHHHHHHHHHHH
Confidence 999866433 2334678888999988753 88999999999999875
No 100
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=6.8e-05 Score=67.26 Aligned_cols=53 Identities=13% Similarity=0.353 Sum_probs=46.1
Q ss_pred CcccccCccccCCCce----ecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcc
Q 036338 12 SFFRCPISLDVMKSPV----SLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVP 65 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dPv----~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~ 65 (408)
..|.||+|.+.+.+.+ .-+|||.|+.+|.++++. +...||+|+.++..+++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir-~D~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIR-KDMVDPVTDKPLKDRDIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcc-ccccccCCCCcCcccceEe
Confidence 6799999999999954 348999999999999987 4668999999999988765
No 101
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.48 E-value=0.00062 Score=52.35 Aligned_cols=88 Identities=24% Similarity=0.283 Sum_probs=66.5
Q ss_pred HHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc
Q 036338 144 VVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD 223 (408)
Q Consensus 144 i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~ 223 (408)
||.|++.|.++.+..+...|+.+|..+- + ..+++.|+.++++. +..+|..|+.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----~------------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~---- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----D------------PEAIPALIELLKDE-DPMVRRAAARALGRIG---- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----H------------HHHHHHHHHHHTSS-SHHHHHHHHHHHHCCH----
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----C------------HhHHHHHHHHHcCC-CHHHHHHHHHHHHHhC----
Confidence 6889999944443445588888887542 1 13478899999888 9999999999999872
Q ss_pred hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHH
Q 036338 224 SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLI 259 (408)
Q Consensus 224 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~ 259 (408)
. ...++.|.+++.++.+..++..|+.+|.
T Consensus 60 ------~-~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ------D-PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ------H-HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ------C-HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 3 5579999999988656677898988874
No 102
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=4.3e-05 Score=79.41 Aligned_cols=44 Identities=27% Similarity=0.583 Sum_probs=40.1
Q ss_pred cccccCccccCCC-----ceecCCCCcccHhhHHHHHhcCCCCCCCcccc
Q 036338 13 FFRCPISLDVMKS-----PVSLCTGVTYDRASIQRWLDSGNNTCPATMQV 57 (408)
Q Consensus 13 ~~~Cpi~~~~~~d-----Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~ 57 (408)
+-.|+||.+.|.. |-.++|||.|+..|+.+|+++ ..+||.||..
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~ 339 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTV 339 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhh
Confidence 6789999999999 778899999999999999997 5679999974
No 103
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.44 E-value=0.042 Score=53.82 Aligned_cols=221 Identities=14% Similarity=0.115 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHhcCChh--HHHHHHHHHHHhhhChhhhhhhh-hc-----CChHHHHHHHhhcCcchhhHHHHHHHHHHh
Q 036338 99 QDEVKDIIRVAISKNED--FSENLTKIVAFAKESDENKTFLA-KF-----DGLVVMLVEILSNVNDVNMLKQVIRVLDLI 170 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~--~~~Al~~L~~la~~~~~~r~~i~-~~-----~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L 170 (408)
+..+..++..++..+.+ ....+..+..+..++. .|..+. .. .-.-++.+.+|...+. -..+....+|..+
T Consensus 64 ~~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~-sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~-~iv~~~~~Ils~l 141 (442)
T KOG2759|consen 64 AQYVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDR-SRVDLFHDYAHKLKRTEWLSFLNLLNRQDT-FIVEMSFRILSKL 141 (442)
T ss_pred HHHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCc-hHHHHHHHHHHhhhccchHHHHHHHhcCCh-HHHHHHHHHHHHH
Confidence 34566777777765544 5556666666665533 232221 11 0224566777766551 1224456666666
Q ss_pred cccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhc-ccCCCHH
Q 036338 171 LNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSL-SLDSDRR 249 (408)
Q Consensus 171 ~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~ 249 (408)
+. .....+.... ..=....|-..++++.+.+...-|+++|..+...++.|..+.. ..++..|+..+ .+..+.+
T Consensus 142 a~--~g~~~~~~~e---~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~-adg~~~l~~~l~s~~~~~Q 215 (442)
T KOG2759|consen 142 AC--FGNCKMELSE---LDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVI-ADGVSLLIRILASTKCGFQ 215 (442)
T ss_pred HH--hccccccchH---HHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeee-cCcchhhHHHHhccCcchh
Confidence 53 1111000000 0112445556666644778889999999999999999999998 66788899988 5545789
Q ss_pred HHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCH--
Q 036338 250 LIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTK-- 327 (408)
Q Consensus 250 ~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~-- 327 (408)
++=...-++|-|..++.-...+...+.|+.|.+.+++. ....+..-.++++.|+....
T Consensus 216 lQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~--------------------~KEKV~Rivlai~~Nll~k~~~ 275 (442)
T KOG2759|consen 216 LQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKES--------------------TKEKVTRIVLAIFRNLLDKGPD 275 (442)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHhccCch
Confidence 99999999999999988888887899999999999873 46789999999999998765
Q ss_pred -----HHHHHHHhhcCchHHHHHHHHH
Q 036338 328 -----QGRMEICQDAALLNGVVQKMLK 349 (408)
Q Consensus 328 -----~~~~~~~~~~g~i~~lv~~l~~ 349 (408)
+...+++. +.++.-++.|..
T Consensus 276 ~~~~k~~~~~mv~--~~v~k~l~~L~~ 300 (442)
T KOG2759|consen 276 RETKKDIASQMVL--CKVLKTLQSLEE 300 (442)
T ss_pred hhHHHHHHHHHHh--cCchHHHHHHHh
Confidence 33344554 456666665544
No 104
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.42 E-value=7e-05 Score=73.96 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=43.3
Q ss_pred CCcccccCccccCCCceecCCCCcccHhhHHHHHhc----CCCCCCCcccccCCC
Q 036338 11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDS----GNNTCPATMQVLQSK 61 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~----~~~~CP~~~~~l~~~ 61 (408)
..+..|-+|.+.-.||+..+|-|+|||-||.+|+.. .+.+||.|...++-+
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 345789999999999999999999999999998753 346899999887654
No 105
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0072 Score=62.09 Aligned_cols=176 Identities=12% Similarity=0.089 Sum_probs=122.6
Q ss_pred CChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHH-HhccC--cccHHHHHHHHhcCCChHHHHHHHHHHH
Q 036338 141 DGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNL-ILKRD--QDCLNSLLLVLKQQESVDSRIESLRLLE 216 (408)
Q Consensus 141 ~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~-i~~~~--~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~ 216 (408)
+.++|.|..+|.+++ ... |-|..+|..++. |+.+.-.. .. .. .-.||.++.+.++. ++..|.+|...+.
T Consensus 127 pelLp~L~~~L~s~d~n~~--EgA~~AL~KIcE---Dsa~~lds~~~-~rpl~~mipkfl~f~~h~-spkiRs~A~~cvN 199 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTC--EGAFGALQKICE---DSAQFLDSDVL-TRPLNIMIPKFLQFFKHP-SPKIRSHAVGCVN 199 (885)
T ss_pred hhHHHHHHHHhcCCccccc--chhHHHHHHHHh---hhHHHHhhhcc-cCchHHhHHHHHHHHhCC-ChhHHHHHHhhhh
Confidence 457899999999987 444 999999999985 33321111 00 01 24589999999999 9999999999998
Q ss_pred HhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCC
Q 036338 217 FIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNG 296 (408)
Q Consensus 217 ~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~ 296 (408)
..-......-.... ..+++.|..+-.+. ++++++..+.+|.-|-.....|-.=-=.++|..++..-+++
T Consensus 200 q~i~~~~qal~~~i-D~Fle~lFalanD~-~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~--------- 268 (885)
T KOG2023|consen 200 QFIIIQTQALYVHI-DKFLEILFALANDE-DPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDV--------- 268 (885)
T ss_pred heeecCcHHHHHHH-HHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCc---------
Confidence 77655433333322 45788888888775 99999999999999876544332222356777777777754
Q ss_pred CCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhh-cCchHHHHHH
Q 036338 297 NGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQD-AALLNGVVQK 346 (408)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~-~g~i~~lv~~ 346 (408)
+..+.-+|+.....+|..+.-+..+..+ ...||.|++-
T Consensus 269 ------------dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~ 307 (885)
T KOG2023|consen 269 ------------DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSG 307 (885)
T ss_pred ------------chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHcc
Confidence 6778899999999999877544444433 1456666554
No 106
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.38 E-value=7.7e-05 Score=72.52 Aligned_cols=48 Identities=21% Similarity=0.543 Sum_probs=39.1
Q ss_pred CCCCCCcccccCccccCCCce----ecCCCCcccHhhHHHHHhcCCCCCCCcccc
Q 036338 7 YITVPSFFRCPISLDVMKSPV----SLCTGVTYDRASIQRWLDSGNNTCPATMQV 57 (408)
Q Consensus 7 ~~~~~~~~~Cpi~~~~~~dPv----~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~ 57 (408)
+..+.+-.+||+|++-|.+-| ++.|.|+|--.|+.+||.. +||+||--
T Consensus 169 ~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~ 220 (493)
T KOG0804|consen 169 PTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYC 220 (493)
T ss_pred CCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhh
Confidence 334455668999999999876 4579999999999999875 79998754
No 107
>PF04641 Rtf2: Rtf2 RING-finger
Probab=97.38 E-value=0.00014 Score=68.49 Aligned_cols=54 Identities=15% Similarity=0.418 Sum_probs=43.3
Q ss_pred CCCcccccCccccCCC--ce-ec-CCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcc
Q 036338 10 VPSFFRCPISLDVMKS--PV-SL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVP 65 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~d--Pv-~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~ 65 (408)
-...|.||||+..|.. +. .+ +|||.|+..+|.+.- ....||+|+++|...|+++
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence 3567999999999954 33 33 899999999999983 3456999999999877654
No 108
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.35 E-value=0.03 Score=55.38 Aligned_cols=165 Identities=16% Similarity=0.158 Sum_probs=121.7
Q ss_pred HHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHh
Q 036338 108 VAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLIL 185 (408)
Q Consensus 108 ~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~ 185 (408)
.+=+.+.+ +..+.+.+|.+..+ ...-..+.+. +.--.++..|.... ...-.++|++.+..+.. .... .+.+
T Consensus 33 ~lL~~~~~vraa~yRilRy~i~d-~~~l~~~~~l-~id~~ii~SL~~~~~~~~ER~QALkliR~~l~--~~~~--~~~~- 105 (371)
T PF14664_consen 33 MLLSDSKEVRAAGYRILRYLISD-EESLQILLKL-HIDIFIIRSLDRDNKNDVEREQALKLIRAFLE--IKKG--PKEI- 105 (371)
T ss_pred HHCCCcHHHHHHHHHHHHHHHcC-HHHHHHHHHc-CCchhhHhhhcccCCChHHHHHHHHHHHHHHH--hcCC--cccC-
Confidence 33344466 88888889888775 5667777777 77777888887655 21113789988877653 2111 1223
Q ss_pred ccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCc
Q 036338 186 KRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSK 265 (408)
Q Consensus 186 ~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~ 265 (408)
..|++..++.+..+. +...|.-+..+|..++..+. +.+.. .|++..|++.+-++ ..+..+..+.++..+-..+
T Consensus 106 --~~~vvralvaiae~~-~D~lr~~cletL~El~l~~P--~lv~~-~gG~~~L~~~l~d~-~~~~~~~l~~~lL~lLd~p 178 (371)
T PF14664_consen 106 --PRGVVRALVAIAEHE-DDRLRRICLETLCELALLNP--ELVAE-CGGIRVLLRALIDG-SFSISESLLDTLLYLLDSP 178 (371)
T ss_pred --CHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCH--HHHHH-cCCHHHHHHHHHhc-cHhHHHHHHHHHHHHhCCc
Confidence 568899999999988 88999999999999987653 33444 78999999999886 6678899999999999999
Q ss_pred chHHHHHhcCcHHHHHHHhcc
Q 036338 266 RAKTKLINHKLITELGKLITD 286 (408)
Q Consensus 266 ~n~~~~~~~G~i~~Lv~lL~~ 286 (408)
..|..+...--+..++.-+.+
T Consensus 179 ~tR~yl~~~~dL~~l~apftd 199 (371)
T PF14664_consen 179 RTRKYLRPGFDLESLLAPFTD 199 (371)
T ss_pred chhhhhcCCccHHHHHHhhhh
Confidence 988877765556666666654
No 109
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.34 E-value=0.00039 Score=45.20 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=34.9
Q ss_pred cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338 222 ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS 263 (408)
Q Consensus 222 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~ 263 (408)
++++..+.+ .|++++|+++|+++ +.++++.|+++|+||+.
T Consensus 2 ~~~~~~i~~-~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVD-AGGLPALVELLKSE-DEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHH-CCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence 346777777 89999999999976 89999999999999973
No 110
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.33 E-value=0.022 Score=58.92 Aligned_cols=235 Identities=19% Similarity=0.226 Sum_probs=144.6
Q ss_pred HHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHH
Q 036338 103 KDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLM 181 (408)
Q Consensus 103 ~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~ 181 (408)
..+++.+.+.+.. |.-+--.+..+...+++.... ++..+.+=|.+++ ...+..|+.+|.++.. .+
T Consensus 45 ~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l------~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~----~~--- 110 (526)
T PF01602_consen 45 MEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL------IINSLQKDLNSPN-PYIRGLALRTLSNIRT----PE--- 110 (526)
T ss_dssp HHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH------HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S----HH---
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH------HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc----cc---
Confidence 3455556655555 444444555555555542222 2444566666655 3344889999999864 22
Q ss_pred HHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 036338 182 NLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITI 261 (408)
Q Consensus 182 ~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~L 261 (408)
.+ .-.++.+.++|.++ ++.+|..|+.++..+...... ..... .++.|.++|.+. ++.++.+|+.++..+
T Consensus 111 -~~----~~l~~~v~~ll~~~-~~~VRk~A~~~l~~i~~~~p~---~~~~~-~~~~l~~lL~d~-~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 111 -MA----EPLIPDVIKLLSDP-SPYVRKKAALALLKIYRKDPD---LVEDE-LIPKLKQLLSDK-DPSVVSAALSLLSEI 179 (526)
T ss_dssp -HH----HHHHHHHHHHHHSS-SHHHHHHHHHHHHHHHHHCHC---CHHGG-HHHHHHHHTTHS-SHHHHHHHHHHHHHH
T ss_pred -hh----hHHHHHHHHHhcCC-chHHHHHHHHHHHHHhccCHH---HHHHH-HHHHHhhhccCC-cchhHHHHHHHHHHH
Confidence 11 23478889999998 999999999999999765322 22213 689999999886 899999999999999
Q ss_pred ccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC-HHHHHHHHhhcCch
Q 036338 262 SSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT-KQGRMEICQDAALL 340 (408)
Q Consensus 262 s~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~g~i 340 (408)
...+....-.-...+..|..++.. .++..+..++.+|..++.. +..... ...+
T Consensus 180 -~~~~~~~~~~~~~~~~~L~~~l~~---------------------~~~~~q~~il~~l~~~~~~~~~~~~~----~~~i 233 (526)
T PF01602_consen 180 -KCNDDSYKSLIPKLIRILCQLLSD---------------------PDPWLQIKILRLLRRYAPMEPEDADK----NRII 233 (526)
T ss_dssp -HCTHHHHTTHHHHHHHHHHHHHTC---------------------CSHHHHHHHHHHHTTSTSSSHHHHHH----HHHH
T ss_pred -ccCcchhhhhHHHHHHHhhhcccc---------------------cchHHHHHHHHHHHhcccCChhhhhH----HHHH
Confidence 211111011112234455555543 4889999999999999874 333311 1233
Q ss_pred HHHHHHHHH-------HHHHHH--------HhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 341 NGVVQKMLK-------TAQEAV--------SSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 341 ~~lv~~l~~-------~~~~~~--------~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
+.+..+|.. ++...+ .-..++..|..+|. +..+..|-.+-..|..+..
T Consensus 234 ~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~-s~~~nvr~~~L~~L~~l~~ 296 (526)
T PF01602_consen 234 EPLLNLLQSSSPSVVYEAIRLIIKLSPSPELLQKAINPLIKLLS-SSDPNVRYIALDSLSQLAQ 296 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHT-SSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhhcchHHHHhhHHHHHHHhh-cccchhehhHHHHHHHhhc
Confidence 334443322 222222 22456788888887 5567688888777776665
No 111
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.068 Score=52.69 Aligned_cols=221 Identities=11% Similarity=0.185 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhC---------hhhhhhhhhcCChHHHHHHHhhcCc-----chhhHHHH
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKES---------DENKTFLAKFDGLVVMLVEILSNVN-----DVNMLKQV 163 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~---------~~~r~~i~~~~G~i~~Lv~lL~s~~-----~~~~~e~A 163 (408)
-+.++.|+++|...+.+ ....+.-|..+...+ +..-..+++. ++++.|+.-+..-+ +....+.+
T Consensus 124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg-~vlaLLvqnveRLdEsvkeea~gv~~~ 202 (536)
T KOG2734|consen 124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDG-QVLALLVQNVERLDESVKEEADGVHNT 202 (536)
T ss_pred hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhc-cHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence 46678899999988888 777777788776432 1346678888 99999999987644 22345778
Q ss_pred HHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcC-CChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHh
Q 036338 164 IRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQ-ESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKS 241 (408)
Q Consensus 164 ~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~-~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~l 241 (408)
++++-|+.. .++.- -..++ +.|.+..|+..+... +-..-+.+|..+|.-+-.+. +++..++. -.+|..|++-
T Consensus 203 L~vveNlv~--~r~~~-~~~~~--e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~-l~GiD~lL~~ 276 (536)
T KOG2734|consen 203 LAVVENLVE--VRPAI-CTEIV--EQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGP-LDGIDVLLRQ 276 (536)
T ss_pred HHHHHHHHh--ccHHH-HHHHH--HhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcC-cccHHHHHhh
Confidence 888888875 44442 34444 668888877765532 13456788888888776665 48888887 6778888887
Q ss_pred cc-----cCC---CHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchH
Q 036338 242 LS-----LDS---DRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLIT 313 (408)
Q Consensus 242 L~-----~~~---~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (408)
+. ++. ..+..++--..|..+-..+.||..++...++....-+++. .....
T Consensus 277 la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~----------------------Kk~sr 334 (536)
T KOG2734|consen 277 LAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE----------------------KKVSR 334 (536)
T ss_pred cchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH----------------------HHHhh
Confidence 74 221 2355666666777777788999999998888888877774 44666
Q ss_pred HHHHHHHHHHhCCH---HHHHHHHhhcCchHHHHHHHHH
Q 036338 314 EKALRLVEILSTTK---QGRMEICQDAALLNGVVQKMLK 349 (408)
Q Consensus 314 ~~a~~~L~~L~~~~---~~~~~~~~~~g~i~~lv~~l~~ 349 (408)
..|+.+|-.+...+ .+...+++ .+|...+....++
T Consensus 335 ~SalkvLd~am~g~~gt~~C~kfVe-~lGLrtiF~~FMk 372 (536)
T KOG2734|consen 335 GSALKVLDHAMFGPEGTPNCNKFVE-ILGLRTIFPLFMK 372 (536)
T ss_pred hhHHHHHHHHHhCCCchHHHHHHHH-HHhHHHHHHHHhh
Confidence 78888888877543 57788887 4778777776664
No 112
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00017 Score=68.47 Aligned_cols=47 Identities=28% Similarity=0.496 Sum_probs=39.8
Q ss_pred CCcccccCccccCCC-------------ceecCCCCcccHhhHHHHHhcCCCCCCCccccc
Q 036338 11 PSFFRCPISLDVMKS-------------PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVL 58 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~d-------------Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l 58 (408)
..+-+|-||.+-|-+ |--++|||.|--+|+..|.++ ..+||.||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence 356789999999654 367899999999999999996 55799999884
No 113
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=97.24 E-value=0.0001 Score=71.09 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=31.6
Q ss_pred CCcccccCccccCCCceecCCCCcccHhhHHHHHh
Q 036338 11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLD 45 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~ 45 (408)
.+++.||||...|+||++++|||+.|+.|-..-..
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 57899999999999999999999999999876543
No 114
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.20 E-value=0.00075 Score=43.80 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=35.2
Q ss_pred cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 265 KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 265 ~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
++++..+++.|++++|+.+|.+. +..++..|+++|.||+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~---------------------~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSE---------------------DEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCC---------------------CHHHHHHHHHHHHHHcC
Confidence 34788889999999999999853 88999999999999973
No 115
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.034 Score=59.98 Aligned_cols=138 Identities=15% Similarity=0.189 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhhhChhhhhhh----hhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccH
Q 036338 117 SENLTKIVAFAKESDENKTFL----AKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCL 192 (408)
Q Consensus 117 ~~Al~~L~~la~~~~~~r~~i----~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i 192 (408)
.-++.+|+++.+.++.....+ .-. |-.+.+..+|....+.+++..|+.++..+.. ..++ -.-++ ..|.+
T Consensus 1743 ~m~LtAL~Nli~~nPdlasvfgSe~~li-g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta---n~~C-v~~~a--~~~vL 1815 (2235)
T KOG1789|consen 1743 LMTLTALANLVSANPDLASVFGSEILLI-GNFPLLITYLRCRKHPKLQILALQVILLATA---NKEC-VTDLA--TCNVL 1815 (2235)
T ss_pred HHHHHHHHHHHhhCcchhhhccchhhhh-cccHHHHHHHHHcCCchHHHHHHHHHHHHhc---ccHH-HHHHH--hhhHH
Confidence 348889999998888443222 223 6788888888876655666888888876654 3444 34455 78899
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccC
Q 036338 193 NSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSS 264 (408)
Q Consensus 193 ~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~ 264 (408)
..|+.+|.+. +..|+.+..+|+.|+++.+-.+.... .|++..+.+++-..++++.+.+|+..|..|...
T Consensus 1816 ~~LL~lLHS~--PS~R~~vL~vLYAL~S~~~i~keA~~-hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1816 TTLLTLLHSQ--PSMRARVLDVLYALSSNGQIGKEALE-HGGLMYILSILCLTNSDQQRAQAAELLAKLQAD 1884 (2235)
T ss_pred HHHHHHHhcC--hHHHHHHHHHHHHHhcCcHHHHHHHh-cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhc
Confidence 9999999874 78999999999999999886555556 688888888887666889999999999998653
No 116
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00027 Score=65.38 Aligned_cols=46 Identities=17% Similarity=0.409 Sum_probs=37.5
Q ss_pred cccCccccCCC---ceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 15 RCPISLDVMKS---PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 15 ~Cpi~~~~~~d---Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
-|.||..-|.. =+++||.|.|-+.||++|+..-...||+|+.++++
T Consensus 325 eCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 325 ECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred eEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 49999876642 34679999999999999998656679999987654
No 117
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00032 Score=65.77 Aligned_cols=53 Identities=21% Similarity=0.327 Sum_probs=44.2
Q ss_pred cCCCCCCcccccCccccCCCceecC-CCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338 6 LYITVPSFFRCPISLDVMKSPVSLC-TGVTYDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dPv~~~-cgh~f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
.....|+.-.||+|.+--.+|-++. +|+.||..||..+.. +...||+|+.+..
T Consensus 293 ~e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 293 SELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPAS 346 (357)
T ss_pred cccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcch
Confidence 3344567778999999999998876 799999999999998 5678999998753
No 118
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=0.00031 Score=63.16 Aligned_cols=36 Identities=25% Similarity=0.511 Sum_probs=32.5
Q ss_pred CCCcccccCccccCCCceecCCCCcccHhhHHHHHh
Q 036338 10 VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLD 45 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~ 45 (408)
+.+.-+|.+|++.++|||+.+.||.|||+||.+++-
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 445568999999999999999999999999999875
No 119
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.04 E-value=0.0013 Score=45.97 Aligned_cols=55 Identities=18% Similarity=0.070 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 036338 205 VDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITI 261 (408)
Q Consensus 205 ~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~L 261 (408)
+.+|..|+++|.+++........-.. ..+++.|+.+|+++ ++.++.+|++||.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 36789999999998866543333333 56899999999987 779999999999875
No 120
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.03 E-value=0.024 Score=51.74 Aligned_cols=149 Identities=17% Similarity=0.227 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc----chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccH
Q 036338 117 SENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN----DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCL 192 (408)
Q Consensus 117 ~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~----~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i 192 (408)
..|+.-|.-++. +++.|..+.++ ..=-.|-.+|...+ .+-..-.++++++.|.. .++..+...+. ..++|
T Consensus 97 cnaL~LlQcvAS-HpdTr~~FL~A-~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk--~dd~eVi~fLl--~TeIV 170 (293)
T KOG3036|consen 97 CNALALLQCVAS-HPDTRRAFLRA-HIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVK--NDDQEVIRFLL--TTEIV 170 (293)
T ss_pred HHHHHHHHHHhc-CcchHHHHHHc-cChhhhHHhhhccccCCchHHHhHHHHHHHHHHHh--cCcHHHHHHHH--HhhhH
Confidence 345555555555 58888888877 65555666665443 23334678899999887 44444455565 88999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcCh-------HHHHHHhcccCCCHHHHHHHHHHHHHhccCc
Q 036338 193 NSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGL-------LAETVKSLSLDSDRRLIEASLSCLITISSSK 265 (408)
Q Consensus 193 ~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~-------i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~ 265 (408)
|..++.+.+| +..+|.-|+.++..+-.++.+-.-|.....= +..+|.-|.+..++++.+.+.++..+|+.++
T Consensus 171 PlCLrime~G-SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 171 PLCLRIMESG-SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHHhcc-cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 9999999999 9999999999999988887665555432222 2233332323338899999999999999999
Q ss_pred chHHHHH
Q 036338 266 RAKTKLI 272 (408)
Q Consensus 266 ~n~~~~~ 272 (408)
..|..+.
T Consensus 250 rar~aL~ 256 (293)
T KOG3036|consen 250 RARAALR 256 (293)
T ss_pred HHHHHHH
Confidence 8777665
No 121
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.97 E-value=0.0058 Score=57.44 Aligned_cols=115 Identities=19% Similarity=0.210 Sum_probs=91.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHH
Q 036338 193 NSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLI 272 (408)
Q Consensus 193 ~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~ 272 (408)
.-++.+|.+. ++.+|..|...|..++.. ..+.....+.-.++.|.+++... .+ .+.|+.||.|++....-|..+.
T Consensus 6 ~elv~ll~~~-sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~-~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 6 VELVELLHSL-SPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDL-DP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHhccC-ChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCc-cc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 4578889998 999999999888888766 34443333456788899999875 44 7889999999999999999999
Q ss_pred hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHH
Q 036338 273 NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEIC 334 (408)
Q Consensus 273 ~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~ 334 (408)
.. .+..++..+.++ ...+.+.++.+|.||++.++....+.
T Consensus 81 ~~-~~k~l~~~~~~p---------------------~~~lad~~cmlL~NLs~~~~~~~~ll 120 (353)
T KOG2973|consen 81 QD-LLKVLMDMLTDP---------------------QSPLADLICMLLSNLSRDDDEVAALL 120 (353)
T ss_pred HH-HHHHHHHHhcCc---------------------ccchHHHHHHHHHHhccCchHHHHHH
Confidence 87 777777777654 56888999999999999777666554
No 122
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=96.96 E-value=0.013 Score=57.86 Aligned_cols=174 Identities=12% Similarity=0.134 Sum_probs=128.6
Q ss_pred HHHHHHHHHHhcCChh---HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338 100 DEVKDIIRVAISKNED---FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED 176 (408)
Q Consensus 100 ~~i~~Lv~~L~s~~~~---~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~ 176 (408)
+.+..|++++++++.+ +.++.+.|..+.. .+|++.++.. | ...++.+-+....++.....+.+|.++.+ +.
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~-~-~~~Il~lAK~~e~~e~aR~~~~il~~mFK--HS 253 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARI-G-LGVILNLAKEREPVELARSVAGILEHMFK--HS 253 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhc-c-chhhhhhhhhcCcHHHHHHHHHHHHHHhh--hh
Confidence 3455788999988765 7788888888764 4788888887 6 55566665544433444788899999988 77
Q ss_pred hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc--chhhHHhhhcChHHHHHHhcccCCCHHHHHHH
Q 036338 177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA--DSKVKIAERDGLLAETVKSLSLDSDRRLIEAS 254 (408)
Q Consensus 177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A 254 (408)
++..+.++ ..|++..++-..+.. ++....+++.+|.|++... +.+..|.+ ..+-+-|.-+-.+. |.-.+-.|
T Consensus 254 eet~~~Lv---aa~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmve-Kr~~EWLF~LA~sk-Del~R~~A 327 (832)
T KOG3678|consen 254 EETCQRLV---AAGGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVE-KRAAEWLFPLAFSK-DELLRLHA 327 (832)
T ss_pred HHHHHHHH---hhcccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHH-hhhhhhhhhhhcch-HHHHHHHH
Confidence 66556666 789999888777777 8999999999999998764 56777776 45555566655554 77788899
Q ss_pred HHHHHHhccCcchHHHHHhcC---cHHHHHHHhc
Q 036338 255 LSCLITISSSKRAKTKLINHK---LITELGKLIT 285 (408)
Q Consensus 255 ~~aL~~Ls~~~~n~~~~~~~G---~i~~Lv~lL~ 285 (408)
+-|..-|+++.+.-......| .|.+|+..+.
T Consensus 328 ClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~D 361 (832)
T KOG3678|consen 328 CLAVAVLATNKEVEREVRKSGTLALVEPLVASLD 361 (832)
T ss_pred HHHHhhhhhhhhhhHHHhhccchhhhhhhhhccC
Confidence 999999999887655555554 4567777665
No 123
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.95 E-value=0.0096 Score=54.64 Aligned_cols=175 Identities=18% Similarity=0.162 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHhhhC--hhhhhhhhh-cCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccH
Q 036338 116 FSENLTKIVAFAKES--DENKTFLAK-FDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCL 192 (408)
Q Consensus 116 ~~~Al~~L~~la~~~--~~~r~~i~~-~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i 192 (408)
|.+|+..|+.+..++ ......+.+ ....+..+...+.+.. ..+...|+.++..|+. .-...+...+ ...+
T Consensus 24 r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~--~l~~~~~~~~----~~~l 96 (228)
T PF12348_consen 24 RVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLAR--QLGSHFEPYA----DILL 96 (228)
T ss_dssp HHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHH--HHGGGGHHHH----HHHH
T ss_pred HHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHH--HHhHhHHHHH----HHHH
Confidence 899999999999876 223333222 1122334444444322 3355778888777765 2212122222 3568
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcCh-HHHHHHhcccCCCHHHHHHHHHHHHHhccCcc-hHHH
Q 036338 193 NSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGL-LAETVKSLSLDSDRRLIEASLSCLITISSSKR-AKTK 270 (408)
Q Consensus 193 ~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~-i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~-n~~~ 270 (408)
|.|++.+.++ +.-++..|..+|..+...-... ..+ ++.+...+.+. ++.++..++..|..+..... +...
T Consensus 97 ~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 97 PPLLKKLGDS-KKFIREAANNALDAIIESCSYS------PKILLEILSQGLKSK-NPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHGGG----HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccchHhh
Confidence 9999999888 8899999999999998764411 122 45566667775 99999999999998866433 1222
Q ss_pred HHh----cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338 271 LIN----HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT 326 (408)
Q Consensus 271 ~~~----~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~ 326 (408)
+-. ...++.+...+.++ ++.+++.|-.++..+...
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~---------------------~~~VR~~Ar~~~~~l~~~ 207 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDA---------------------DPEVREAARECLWALYSH 207 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS----------------------HHHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHCCCC---------------------CHHHHHHHHHHHHHHHHH
Confidence 212 34667778888754 899999999999999654
No 124
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=96.95 E-value=0.048 Score=53.95 Aligned_cols=229 Identities=17% Similarity=0.150 Sum_probs=152.5
Q ss_pred HHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhc
Q 036338 122 KIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQ 201 (408)
Q Consensus 122 ~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~ 201 (408)
.|..+.+.++..|..+.-. -..+.+..++-+++ .++...+..++..+.. +...++.+. +.+.=-.++.-|..
T Consensus 6 ~Lv~l~~~~p~l~~~~~~~-~~~~~i~~~lL~~~-~~vraa~yRilRy~i~---d~~~l~~~~---~l~id~~ii~SL~~ 77 (371)
T PF14664_consen 6 DLVDLLKRHPTLKYDLVLS-FFGERIQCMLLSDS-KEVRAAGYRILRYLIS---DEESLQILL---KLHIDIFIIRSLDR 77 (371)
T ss_pred HHHHHHHhCchhhhhhhHH-HHHHHHHHHHCCCc-HHHHHHHHHHHHHHHc---CHHHHHHHH---HcCCchhhHhhhcc
Confidence 4445555666666665544 45555655554444 3344778888888875 444434433 55555556666654
Q ss_pred C-CChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHH
Q 036338 202 Q-ESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITEL 280 (408)
Q Consensus 202 ~-~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~L 280 (408)
. .+...|+.|.+.+..+...+.+...+ ..|++..+|.+..+. +...+..++.+|..|+..+ -..++++||+..|
T Consensus 78 ~~~~~~ER~QALkliR~~l~~~~~~~~~--~~~vvralvaiae~~-~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L 152 (371)
T PF14664_consen 78 DNKNDVEREQALKLIRAFLEIKKGPKEI--PRGVVRALVAIAEHE-DDRLRRICLETLCELALLN--PELVAECGGIRVL 152 (371)
T ss_pred cCCChHHHHHHHHHHHHHHHhcCCcccC--CHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHH
Confidence 3 25678899999999888765554444 268999999999986 7789999999999999853 3456699999999
Q ss_pred HHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHH-----------
Q 036338 281 GKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLK----------- 349 (408)
Q Consensus 281 v~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~----------- 349 (408)
++.+.++ ...+.+..+.++-.+-.+|..|..+... --+..++.-+..
T Consensus 153 ~~~l~d~---------------------~~~~~~~l~~~lL~lLd~p~tR~yl~~~-~dL~~l~apftd~~~~~~~~~~~ 210 (371)
T PF14664_consen 153 LRALIDG---------------------SFSISESLLDTLLYLLDSPRTRKYLRPG-FDLESLLAPFTDFHYRKIKDDRE 210 (371)
T ss_pred HHHHHhc---------------------cHhHHHHHHHHHHHHhCCcchhhhhcCC-ccHHHHHHhhhhhhccccccchH
Confidence 9999753 3348889999999999999998866542 223333332222
Q ss_pred -----HHHHHH---H------------hcCcHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 036338 350 -----TAQEAV---S------------SSNVLTKILLLMQSNCTPAVRQMSADLLKI 386 (408)
Q Consensus 350 -----~~~~~~---~------------~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~ 386 (408)
..+..+ . +..++..|+..|+... +..|+..-+++--
T Consensus 211 ~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~-~~ir~~Ildll~d 266 (371)
T PF14664_consen 211 LERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPN-PEIRKAILDLLFD 266 (371)
T ss_pred HHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCC-HHHHHHHHHHHHH
Confidence 111111 1 1367888888887654 5577777665553
No 125
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.83 E-value=0.51 Score=47.35 Aligned_cols=88 Identities=14% Similarity=0.062 Sum_probs=47.0
Q ss_pred HHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc
Q 036338 144 VVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA 222 (408)
Q Consensus 144 i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~ 222 (408)
+..|+..|.+.+ .++ ..++.+|..+- ..+..+.|+.+|.+. +..+|..++.++..
T Consensus 88 ~~~L~~~L~d~~~~vr--~aaa~ALg~i~----------------~~~a~~~L~~~L~~~-~p~vR~aal~al~~----- 143 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLC--AGIQAALGWLG----------------GRQAEPWLEPLLAAS-EPPGRAIGLAALGA----- 143 (410)
T ss_pred HHHHHHHhcCCCHHHH--HHHHHHHhcCC----------------chHHHHHHHHHhcCC-ChHHHHHHHHHHHh-----
Confidence 566677776554 232 55555554321 223345556666655 66666555544443
Q ss_pred chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338 223 DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS 263 (408)
Q Consensus 223 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~ 263 (408)
.. ....++|..+|++. ++.++..|+++|..+..
T Consensus 144 -----r~--~~~~~~L~~~L~d~-d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 144 -----HR--HDPGPALEAALTHE-DALVRAAALRALGELPR 176 (410)
T ss_pred -----hc--cChHHHHHHHhcCC-CHHHHHHHHHHHHhhcc
Confidence 11 22345666666654 66666666666666543
No 126
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=96.77 E-value=0.0012 Score=60.17 Aligned_cols=63 Identities=30% Similarity=0.342 Sum_probs=45.5
Q ss_pred cccccCccccCCCceec-CCCCcccHhhHHHHHhcC-CCCCCCcccc----cCCCCCcccHHHHHHHHH
Q 036338 13 FFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSG-NNTCPATMQV----LQSKEFVPNRTLQRLIQI 75 (408)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~-~~~CP~~~~~----l~~~~l~~n~~l~~~I~~ 75 (408)
+++|||+.....+||+. .|||.|+|..|..++... ...||+-+.. +.+..+.+...+++.|.+
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr~ 244 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCENPYYIQPGHLDEDKELQQKIRQ 244 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCCccccccccccCchHHHHHHHHH
Confidence 47899999999999987 599999999999998742 3569996654 222334444445444443
No 127
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.00092 Score=64.55 Aligned_cols=43 Identities=23% Similarity=0.522 Sum_probs=39.2
Q ss_pred cccccCccccCCC---ceecCCCCcccHhhHHHHHhcCC--CCCCCcc
Q 036338 13 FFRCPISLDVMKS---PVSLCTGVTYDRASIQRWLDSGN--NTCPATM 55 (408)
Q Consensus 13 ~~~Cpi~~~~~~d---Pv~~~cgh~f~r~cI~~~~~~~~--~~CP~~~ 55 (408)
-|.|||.++--.| |+.+.|||..++.+|.+...+|. +.||.|-
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP 381 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCP 381 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCC
Confidence 3799999999888 99999999999999999999887 7899994
No 128
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.00081 Score=64.82 Aligned_cols=60 Identities=25% Similarity=0.458 Sum_probs=45.7
Q ss_pred cccccCccccCCCce-----ecCCCCcccHhhHHHHHhcC-CCCCCCcccccCCCCCcccHHHHHH
Q 036338 13 FFRCPISLDVMKSPV-----SLCTGVTYDRASIQRWLDSG-NNTCPATMQVLQSKEFVPNRTLQRL 72 (408)
Q Consensus 13 ~~~Cpi~~~~~~dPv-----~~~cgh~f~r~cI~~~~~~~-~~~CP~~~~~l~~~~l~~n~~l~~~ 72 (408)
-.+||||.+-+.-|+ ++.|||-|-..||++|+... .-.||.|.-.-...++++-..+|..
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q 69 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ 69 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence 358999999988875 56799999999999999532 2469999766555667776666553
No 129
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.66 E-value=0.057 Score=50.07 Aligned_cols=150 Identities=17% Similarity=0.247 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-c---hhhHHHHHHHHHHhcccccchHHHHHHHhccCcccH
Q 036338 117 SENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-D---VNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCL 192 (408)
Q Consensus 117 ~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~---~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i 192 (408)
..|+.-+..+|. +++.|..+.++ ...-.|..+|...+ . +...-..+++++.|.+ .|+...-..+. +..++
T Consensus 68 cnaLaLlQ~vAs-hpetr~~Fl~a-~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK--~d~~evi~fLl--~tEii 141 (262)
T PF04078_consen 68 CNALALLQCVAS-HPETRMPFLKA-HIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVK--TDDPEVISFLL--QTEII 141 (262)
T ss_dssp HHHHHHHHHHHH--TTTHHHHHHT-TGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHT--T--HHHHHHHH--CTTHH
T ss_pred HHHHHHHHHHHc-ChHHHHHHHHc-CchhhehhhhhccccccccchhhHhHHHHHHHHHc--CCcHHHHHHHH--hhchH
Confidence 356666666666 68999999999 88888888887655 1 2233567888888887 44444456666 88999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcC-------hHHHHHHhcccCCCHHHHHHHHHHHHHhccCc
Q 036338 193 NSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDG-------LLAETVKSLSLDSDRRLIEASLSCLITISSSK 265 (408)
Q Consensus 193 ~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g-------~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~ 265 (408)
|..++.+..| +.-.|.-|..++..+-.++.+-..+..+.. ++..+|.-+....+++..+...++-..|+.++
T Consensus 142 plcLr~me~G-selSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 142 PLCLRIMEFG-SELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHHHHHHHHS--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHhc-cHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 9999999999 999999999999999877766555543333 33333333333338999999999999999999
Q ss_pred chHHHHHh
Q 036338 266 RAKTKLIN 273 (408)
Q Consensus 266 ~n~~~~~~ 273 (408)
..|..+..
T Consensus 221 rar~aL~~ 228 (262)
T PF04078_consen 221 RAREALRQ 228 (262)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHH
Confidence 98887664
No 130
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0013 Score=60.06 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=41.0
Q ss_pred CcccccCccccCCCce----------ecCCCCcccHhhHHHHHhcC-CCCCCCcccccCCC
Q 036338 12 SFFRCPISLDVMKSPV----------SLCTGVTYDRASIQRWLDSG-NNTCPATMQVLQSK 61 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dPv----------~~~cgh~f~r~cI~~~~~~~-~~~CP~~~~~l~~~ 61 (408)
++-.|.+|++-+-+.| .++|+|.|-.-||.-|.--| ..+||.|++.+...
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 4568999999887766 78999999999999997655 57899998875443
No 131
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.59 E-value=0.32 Score=52.84 Aligned_cols=237 Identities=15% Similarity=0.154 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHH-H-hcccccchHHHHHHHhccCcccH
Q 036338 116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLD-L-ILNKIEDQQHLMNLILKRDQDCL 192 (408)
Q Consensus 116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~-~-L~~~~~~~~~~~~~i~~~~~g~i 192 (408)
|.+|+.-|..+..-.+=....-... |+.|-+++||+++. +.+ ..+..+. . |+. |..+ +.-++ +.++-
T Consensus 487 RlRAL~LL~RFLDlGpWAV~LaLsV-GIFPYVLKLLQS~a~ELr---piLVFIWAKILAv---D~SC-Q~dLv--Ke~g~ 556 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGPWAVDLALSV-GIFPYVLKLLQSSARELR---PILVFIWAKILAV---DPSC-QADLV--KENGY 556 (1387)
T ss_pred HHHHHHHHHHHhccchhhhhhhhcc-chHHHHHHHhccchHhhh---hhHHHHHHHHHhc---Cchh-HHHHH--hccCc
Confidence 6778888777765434333444556 99999999999987 333 2222221 1 333 4332 44343 45555
Q ss_pred HHHHHHHhc-C-CChHHHHHHHHHHHHhhcCcc-hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc-CcchH
Q 036338 193 NSLLLVLKQ-Q-ESVDSRIESLRLLEFIAGDAD-SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS-SKRAK 268 (408)
Q Consensus 193 ~~Lv~lL~~-~-~~~~~~~~Aa~~L~~La~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~-~~~n~ 268 (408)
..++..|.. + -+.|.|.-||.+|..+..+.. ..+...+ .+.|..=...|.++..+-.+...+-+|..|=. .+++|
T Consensus 557 ~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~-~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Ar 635 (1387)
T KOG1517|consen 557 KYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLN-GNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEAR 635 (1387)
T ss_pred eeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcc-ccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhh
Confidence 555556654 2 145888899999999987743 5555555 67777777777774357788888888888865 45677
Q ss_pred HHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCH----HHHHHHHhhcCchHHHH
Q 036338 269 TKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTK----QGRMEICQDAALLNGVV 344 (408)
Q Consensus 269 ~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~----~~~~~~~~~~g~i~~lv 344 (408)
..=++.++...|+.+|+++ -++++..|+-+|..+.+.. +.+...+++ .+
T Consensus 636 w~G~r~~AhekL~~~LsD~---------------------vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~------~~ 688 (1387)
T KOG1517|consen 636 WSGRRDNAHEKLILLLSDP---------------------VPEVRAAAVFALGTFLSNGSDNFDEQTLVVEE------EI 688 (1387)
T ss_pred hccccccHHHHHHHHhcCc---------------------cHHHHHHHHHHHHHHhcccccccchhhhhhhh------hh
Confidence 7777999999999999864 7899999999999997731 222222211 12
Q ss_pred HH-HHHHHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhhcCc
Q 036338 345 QK-MLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVNYK 392 (408)
Q Consensus 345 ~~-l~~~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~ 392 (408)
.+ ..+...+.++..|- ..++.++ +.+++-+|......|..+...|+
T Consensus 689 ~l~~~~~~~E~~i~~~~-~~ll~~v-sdgsplvr~ev~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 689 DLDDERTSIEDLIIKGL-MSLLALV-SDGSPLVRTEVVVALSHFVVGYV 735 (1387)
T ss_pred cchhhhhhHHHHHHhhH-HHHHHHH-hccchHHHHHHHHHHHHHHHhhH
Confidence 10 01123444444443 3444444 45567677666666666555443
No 132
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.57 E-value=0.0051 Score=42.93 Aligned_cols=55 Identities=16% Similarity=0.068 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHH
Q 036338 248 RRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEIL 323 (408)
Q Consensus 248 ~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L 323 (408)
+.+++.|+++|.+++........-....+++.|+.+|.++ +..++..|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~---------------------~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD---------------------DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS---------------------SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC---------------------CHHHHHHHHHHHhcC
Confidence 4689999999999988776666666778999999999864 669999999999875
No 133
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.0018 Score=58.55 Aligned_cols=52 Identities=15% Similarity=0.347 Sum_probs=42.5
Q ss_pred CCcccccCccccCCCce----ecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcc
Q 036338 11 PSFFRCPISLDVMKSPV----SLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVP 65 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv----~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~ 65 (408)
...|+|||++-.|.+-. +-+|||.|..+.+.+.-. ..|++|++.++.++.++
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeika---s~C~~C~a~y~~~dvIv 164 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKA---SVCHVCGAAYQEDDVIV 164 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhhh---ccccccCCcccccCeEe
Confidence 35699999999999954 458999999999887753 47999999998877543
No 134
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.043 Score=59.24 Aligned_cols=140 Identities=12% Similarity=0.152 Sum_probs=108.3
Q ss_pred HHHHHHHHHHhcccccchHHHHHHHhcc--CcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHH
Q 036338 160 LKQVIRVLDLILNKIEDQQHLMNLILKR--DQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAE 237 (408)
Q Consensus 160 ~e~A~~~L~~L~~~~~~~~~~~~~i~~~--~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~ 237 (408)
++-++.+|.|+.. ...+ +..++..+ --|-.+.+..+|+...+..++.-|..++..+..+.+.-..++. .|.+..
T Consensus 1742 v~m~LtAL~Nli~--~nPd-lasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~-~~vL~~ 1817 (2235)
T KOG1789|consen 1742 VLMTLTALANLVS--ANPD-LASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLAT-CNVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHh--hCcc-hhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHh-hhHHHH
Confidence 4668889999875 2221 11111100 1377888888888643778999999999999999998888887 789999
Q ss_pred HHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Q 036338 238 TVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKAL 317 (408)
Q Consensus 238 Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 317 (408)
|+.+|.+ -|..++-++..||.|+++++-.+...+.|++..+.+++-. ..++..+..|+
T Consensus 1818 LL~lLHS--~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~--------------------~~~~QqRAqaA 1875 (2235)
T KOG1789|consen 1818 LLTLLHS--QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCL--------------------TNSDQQRAQAA 1875 (2235)
T ss_pred HHHHHhc--ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhc--------------------cCcHHHHHHHH
Confidence 9999987 4789999999999999999999999999999999988854 23566677777
Q ss_pred HHHHHHhC
Q 036338 318 RLVEILST 325 (408)
Q Consensus 318 ~~L~~L~~ 325 (408)
..|..|..
T Consensus 1876 eLlaKl~A 1883 (2235)
T KOG1789|consen 1876 ELLAKLQA 1883 (2235)
T ss_pred HHHHHhhh
Confidence 77777643
No 135
>PTZ00429 beta-adaptin; Provisional
Probab=96.44 E-value=1.4 Score=47.62 Aligned_cols=179 Identities=12% Similarity=0.110 Sum_probs=110.7
Q ss_pred HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH
Q 036338 101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH 179 (408)
Q Consensus 101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~ 179 (408)
.+..+.+.+.+.++. |.-|++.|..+-. +. +.+ -.++.+.+.|.+.+ +-+...|+.++..+-. .+.
T Consensus 106 aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~----i~e--~l~~~lkk~L~D~~-pYVRKtAalai~Kly~--~~p-- 172 (746)
T PTZ00429 106 AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SS----VLE--YTLEPLRRAVADPD-PYVRKTAAMGLGKLFH--DDM-- 172 (746)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HH----HHH--HHHHHHHHHhcCCC-HHHHHHHHHHHHHHHh--hCc--
Confidence 456667777777766 7777777765532 12 222 13444566665544 3344888888888754 232
Q ss_pred HHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHH
Q 036338 180 LMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLI 259 (408)
Q Consensus 180 ~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~ 259 (408)
..+. +.|.++.|.++|... +..+..+|..+|..+.........+. .+.+..|+..|.+- ++-.+-..+.+|.
T Consensus 173 --elv~--~~~~~~~L~~LL~D~-dp~Vv~nAl~aL~eI~~~~~~~l~l~--~~~~~~Ll~~L~e~-~EW~Qi~IL~lL~ 244 (746)
T PTZ00429 173 --QLFY--QQDFKKDLVELLNDN-NPVVASNAAAIVCEVNDYGSEKIESS--NEWVNRLVYHLPEC-NEWGQLYILELLA 244 (746)
T ss_pred --cccc--ccchHHHHHHHhcCC-CccHHHHHHHHHHHHHHhCchhhHHH--HHHHHHHHHHhhcC-ChHHHHHHHHHHH
Confidence 2343 678899999999988 99999999999999976543332222 45567777777654 5555555566654
Q ss_pred HhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 260 TISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 260 ~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
..... +... ....+..+...|++. ++.++-.|+.++.++..
T Consensus 245 ~y~P~--~~~e--~~~il~~l~~~Lq~~---------------------N~AVVl~Aik~il~l~~ 285 (746)
T PTZ00429 245 AQRPS--DKES--AETLLTRVLPRMSHQ---------------------NPAVVMGAIKVVANLAS 285 (746)
T ss_pred hcCCC--CcHH--HHHHHHHHHHHhcCC---------------------CHHHHHHHHHHHHHhcC
Confidence 43221 1111 124556666666643 56777777777777764
No 136
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.42 E-value=0.22 Score=49.92 Aligned_cols=90 Identities=16% Similarity=0.082 Sum_probs=61.9
Q ss_pred ChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC
Q 036338 142 GLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD 221 (408)
Q Consensus 142 G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~ 221 (408)
.+++.|+..|....+..+...++.+| ... + +..++..|+..|.+. +..++..++.+|..
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al--~~~---~-----------~~~~~~~L~~~L~d~-~~~vr~aaa~ALg~---- 112 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALAL--LAQ---E-----------DALDLRSVLAVLQAG-PEGLCAGIQAALGW---- 112 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHH--hcc---C-----------ChHHHHHHHHHhcCC-CHHHHHHHHHHHhc----
Confidence 56888888886544233223232222 211 1 122378889999988 88899999999874
Q ss_pred cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHH
Q 036338 222 ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLIT 260 (408)
Q Consensus 222 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~ 260 (408)
+.. .+..+.|+.+|++. ++.++..++.++..
T Consensus 113 ------i~~-~~a~~~L~~~L~~~-~p~vR~aal~al~~ 143 (410)
T TIGR02270 113 ------LGG-RQAEPWLEPLLAAS-EPPGRAIGLAALGA 143 (410)
T ss_pred ------CCc-hHHHHHHHHHhcCC-ChHHHHHHHHHHHh
Confidence 333 56789999999887 88899888877765
No 137
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.41 E-value=0.26 Score=50.15 Aligned_cols=248 Identities=17% Similarity=0.112 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc----chhhHHHHHHHHHHhcccccchHHHHHHHhccCccc
Q 036338 116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN----DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDC 191 (408)
Q Consensus 116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~----~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~ 191 (408)
..+|+++|.++.-.++..|..+.+. |..+.++..|+... ......-...+|+.++. ......+.++. +.++
T Consensus 49 ~~EALKCL~N~lf~s~~aR~~~~~~-~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa--~~~~~~~~L~~--e~~~ 123 (446)
T PF10165_consen 49 SREALKCLCNALFLSPSARQIFVDL-GLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTA--LRPDDRKKLIE--EHHG 123 (446)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHc-CcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhc--CChhHHHHHHH--Hhhh
Confidence 7889999999999999999999999 99999999998862 12233556777776664 23333245554 6677
Q ss_pred HHHHHHHHhc--------C--------CChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccC--------CC
Q 036338 192 LNSLLLVLKQ--------Q--------ESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLD--------SD 247 (408)
Q Consensus 192 i~~Lv~lL~~--------~--------~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~--------~~ 247 (408)
+..++..|.. . .+.+....+.++++|+......... -.....++.|+.+|..- ..
T Consensus 124 ~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l 202 (446)
T PF10165_consen 124 VELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPL 202 (446)
T ss_pred HHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcc
Confidence 8777776642 1 0223446678888899765443322 11134566666665421 12
Q ss_pred HHHHHHHHHHHHHhccCcchH------------HHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHH
Q 036338 248 RRLIEASLSCLITISSSKRAK------------TKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEK 315 (408)
Q Consensus 248 ~~~~~~A~~aL~~Ls~~~~n~------------~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (408)
......+..+|.|+-...... ..-.....+..|+++|..... .. ....-.....-
T Consensus 203 ~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~-~~------------~~~~l~~~l~P 269 (446)
T PF10165_consen 203 DPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLD-KY------------EALKLDELLTP 269 (446)
T ss_pred hhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHH-hc------------CcccchhhHhh
Confidence 356777888888873211100 001123456666666653100 00 00001234444
Q ss_pred HHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHHHHHHHHH-hcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 316 ALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKTAQEAVS-SSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 316 a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~~~~~~~~-~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
.+.+|.+++.....-++..+. ..+|..-+ .....- ....-.+|+.+|.+.. +..|..++.+|..|.+
T Consensus 270 lL~lL~~~~~~~~~~Rk~lr~-~lLP~~~D-----r~~~~e~~~tL~~rLlrLmt~~~-~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 270 LLTLLTRLARAAREVRKYLRA-RLLPPDKD-----RKKPPEKGDTLRSRLLRLMTSPD-PQLKDAVAELLFVLCK 337 (446)
T ss_pred HHHHHHHHHHhcHHHHHHHHH-HhCCChhh-----cccCCCCCcchHHHHHHHhCCCC-chHHHHHHHHHHHHHh
Confidence 555666665542222223232 34554422 122111 2344567777777665 7789999999988776
No 138
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.40 E-value=0.13 Score=44.27 Aligned_cols=129 Identities=16% Similarity=0.192 Sum_probs=100.4
Q ss_pred HHHHhccCcccHHHHHHHHhcCCC------hHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCC-CHHHHHH
Q 036338 181 MNLILKRDQDCLNSLLLVLKQQES------VDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDS-DRRLIEA 253 (408)
Q Consensus 181 ~~~i~~~~~g~i~~Lv~lL~~~~~------~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~~ 253 (408)
.+.| +.|++..|++++.+| + .+....+..+..+|-.+.-.-+.... ..+|...+.++.... +..+.+.
T Consensus 5 ~EFI---~~~Gl~~L~~~iE~g-~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~-~~FI~Kia~~Vn~~~~d~~i~q~ 79 (160)
T PF11841_consen 5 QEFI---SRDGLTLLIKMIEEG-TEIQPCKGEILAYALTAFVELMEHGIVSWDTLS-DSFIKKIASYVNSSAMDASILQR 79 (160)
T ss_pred HHHH---hccCHHHHHHHHHcC-CccCcchHHHHHHHHHHHHHHHhcCcCchhhcc-HHHHHHHHHHHccccccchHHHH
Confidence 3456 678999999999998 5 36667777788887776655666665 678999999998543 6789999
Q ss_pred HHHHHHHhccCcchHHHHH-hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC--CHHHH
Q 036338 254 SLSCLITISSSKRAKTKLI-NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST--TKQGR 330 (408)
Q Consensus 254 A~~aL~~Ls~~~~n~~~~~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~--~~~~~ 330 (408)
|+..|-++..+.......| +.=-++.|+.+|+.. +..++.+|.+.+..|-. +++.|
T Consensus 80 sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~---------------------~~~iq~naiaLinAL~~kA~~~~r 138 (160)
T PF11841_consen 80 SLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVS---------------------NQEIQTNAIALINALFLKADDSKR 138 (160)
T ss_pred HHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcC---------------------CHHHHHHHHHHHHHHHhcCChHHH
Confidence 9999999999888877777 466679999999864 78999999999998864 35555
Q ss_pred HHHHh
Q 036338 331 MEICQ 335 (408)
Q Consensus 331 ~~~~~ 335 (408)
+.+.+
T Consensus 139 ~~i~~ 143 (160)
T PF11841_consen 139 KEIAE 143 (160)
T ss_pred HHHHH
Confidence 55544
No 139
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=96.39 E-value=0.0029 Score=46.76 Aligned_cols=44 Identities=30% Similarity=0.556 Sum_probs=35.7
Q ss_pred cccCccccCCC----ceec-CCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338 15 RCPISLDVMKS----PVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 15 ~Cpi~~~~~~d----Pv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
+||-|+--|.. ||+. .|.|.|--.||.+|++. ...||.+++++.
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~ 81 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV 81 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence 58888776633 7776 59999999999999996 667999998754
No 140
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.19 E-value=0.084 Score=45.40 Aligned_cols=129 Identities=9% Similarity=0.186 Sum_probs=93.6
Q ss_pred cChHHHHHHhcccCCC-----HHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCC
Q 036338 232 DGLLAETVKSLSLDSD-----RRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSG 306 (408)
Q Consensus 232 ~g~i~~Lv~lL~~~~~-----~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~ 306 (408)
.|++..|++++.++.. ......++.|+.+|-.++-........--|..++..+..+
T Consensus 10 ~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~------------------- 70 (160)
T PF11841_consen 10 RDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSS------------------- 70 (160)
T ss_pred ccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccc-------------------
Confidence 6789999999998743 4778889999999998877666777777888888888753
Q ss_pred CCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHH
Q 036338 307 NGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQMSA 381 (408)
Q Consensus 307 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~ 381 (408)
..+..+.+.|+++|+++..+....-..+..+=-++.|+.+|.. ...-++..++..+..++......+.|+.+.
T Consensus 71 ~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~--~~~~iq~naiaLinAL~~kA~~~~r~~i~~ 143 (160)
T PF11841_consen 71 AMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQV--SNQEIQTNAIALINALFLKADDSKRKEIAE 143 (160)
T ss_pred cccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHc--CCHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 3378999999999999998766655555544667778876553 222345566677766666554444444443
No 141
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=96.19 E-value=0.0046 Score=42.43 Aligned_cols=45 Identities=22% Similarity=0.363 Sum_probs=24.3
Q ss_pred cccccCccccCCCceec-CCCCc--ccHhhHHHH-HhcCCCCCCCcccc
Q 036338 13 FFRCPISLDVMKSPVSL-CTGVT--YDRASIQRW-LDSGNNTCPATMQV 57 (408)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~-~cgh~--f~r~cI~~~-~~~~~~~CP~~~~~ 57 (408)
.+.|||+...|+-||-. .|-|. |+-...-+. ...+...||.|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 36899999999999976 59997 555433333 33355789999864
No 142
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.15 E-value=0.028 Score=44.67 Aligned_cols=66 Identities=12% Similarity=0.029 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhccC-cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHH
Q 036338 251 IEASLSCLITISSS-KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQ 328 (408)
Q Consensus 251 ~~~A~~aL~~Ls~~-~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~ 328 (408)
+..-++.|.||+.. +.+...+.+.|+||.++..-.-+ +.+|-++|.|..++++|+. +++
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD-------------------~~nP~irEwai~aiRnL~e~n~e 63 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNID-------------------DHNPFIREWAIFAIRNLCEGNPE 63 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCC-------------------cccHHHHHHHHHHHHHHHhCCHH
Confidence 55678899999984 56888888999999999987543 4579999999999999996 688
Q ss_pred HHHHHHh
Q 036338 329 GRMEICQ 335 (408)
Q Consensus 329 ~~~~~~~ 335 (408)
|++.+..
T Consensus 64 NQ~~I~~ 70 (102)
T PF09759_consen 64 NQEFIAQ 70 (102)
T ss_pred HHHHHHh
Confidence 8887765
No 143
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.0051 Score=59.01 Aligned_cols=63 Identities=22% Similarity=0.279 Sum_probs=51.4
Q ss_pred ccccCccccCCC------ceecCCCCcccHhhHHHHHhcCCCCCCCcccc--cCC---CCCcccHHHHHHHHHH
Q 036338 14 FRCPISLDVMKS------PVSLCTGVTYDRASIQRWLDSGNNTCPATMQV--LQS---KEFVPNRTLQRLIQIW 76 (408)
Q Consensus 14 ~~Cpi~~~~~~d------Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~--l~~---~~l~~n~~l~~~I~~~ 76 (408)
+.|-||.+.|+. |-++.|||+||..|+......+...||.||.+ +.. ..+..|+.+-..++..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 469999998876 88899999999999998888777789999987 332 4467788887777765
No 144
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.99 E-value=0.0056 Score=41.26 Aligned_cols=43 Identities=16% Similarity=0.321 Sum_probs=22.2
Q ss_pred ccCccccCC--Cceec--CCCCcccHhhHHHHHhcCCCCCCCccccc
Q 036338 16 CPISLDVMK--SPVSL--CTGVTYDRASIQRWLDSGNNTCPATMQVL 58 (408)
Q Consensus 16 Cpi~~~~~~--dPv~~--~cgh~f~r~cI~~~~~~~~~~CP~~~~~l 58 (408)
||+|-+.|. |--.. +||+.+|+.|..+-.+++...||-|++++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 789988882 22223 59999999998888776678899999875
No 145
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=1.6 Score=43.35 Aligned_cols=210 Identities=16% Similarity=0.167 Sum_probs=137.6
Q ss_pred HHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccc----cch--HHHHHHHhccCcc
Q 036338 118 ENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKI----EDQ--QHLMNLILKRDQD 190 (408)
Q Consensus 118 ~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~----~~~--~~~~~~i~~~~~g 190 (408)
..++.+..+|. -|...-.+++. ++|+.|+.+|.... ++. -..+..|-.|.-.+ +++ +.+-..++ +.+
T Consensus 103 d~IQ~mhvlAt-~PdLYp~lvel-n~V~slL~LLgHeNtDI~--iavvdLLqELTD~Dv~~es~egAevLidaLv--dg~ 176 (536)
T KOG2734|consen 103 DIIQEMHVLAT-MPDLYPILVEL-NAVQSLLELLGHENTDIA--IAVVDLLQELTDEDVLYESEEGAEVLIDALV--DGQ 176 (536)
T ss_pred HHHHHHHhhhc-ChHHHHHHHHh-ccHHHHHHHhcCCCchhH--HHHHHHHHHhhhhcccccccccHHHHHHHHH--hcc
Confidence 45666666665 47788889999 99999999998876 443 44555666654210 111 11223444 788
Q ss_pred cHHHHHHHHhcCCChHHH------HHHHHHHHHhhcC-cchhhHHhhhcChHHHHHHhcccC-CCHHHHHHHHHHHHHhc
Q 036338 191 CLNSLLLVLKQQESVDSR------IESLRLLEFIAGD-ADSKVKIAERDGLLAETVKSLSLD-SDRRLIEASLSCLITIS 262 (408)
Q Consensus 191 ~i~~Lv~lL~~~~~~~~~------~~Aa~~L~~La~~-~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~~A~~aL~~Ls 262 (408)
+++.|+.-+..- +..++ .+...++.|+... ++.+..+++ .|.+.-|++-+... .-..-+..|...|.-+-
T Consensus 177 vlaLLvqnveRL-dEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e-~~ll~WLL~rl~~k~~f~aNk~YasEiLaill 254 (536)
T KOG2734|consen 177 VLALLVQNVERL-DESVKEEADGVHNTLAVVENLVEVRPAICTEIVE-QGLLSWLLKRLKGKAAFDANKQYASEILAILL 254 (536)
T ss_pred HHHHHHHHHHHh-hhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHH-hhHHHHHHHHHhcccCcchhHHHHHHHHHHHh
Confidence 899998877654 44443 4456777787765 456777777 58777777755432 12346677777777766
Q ss_pred cC-cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchH
Q 036338 263 SS-KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLN 341 (408)
Q Consensus 263 ~~-~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~ 341 (408)
.+ ++|+.....-.+|..|++-+.-- ..++ -+..+.....++---.|..+...++||..+... .|+.
T Consensus 255 q~s~e~~~~~~~l~GiD~lL~~la~y-k~~d-----------P~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~-EGlq 321 (536)
T KOG2734|consen 255 QNSDENRKLLGPLDGIDVLLRQLAVY-KRHD-----------PATVDEEEMMENLFDCLCSLLMAPANRERFLKG-EGLQ 321 (536)
T ss_pred ccCchhhhhhcCcccHHHHHhhcchh-hccC-----------CCCcCHHHHHHHHHHHHHHHhcChhhhhhhhcc-ccHH
Confidence 64 45888888999999999887421 0000 000123466677777788888899999999984 6777
Q ss_pred HHHHHHHH
Q 036338 342 GVVQKMLK 349 (408)
Q Consensus 342 ~lv~~l~~ 349 (408)
+..+|++
T Consensus 322 -Lm~Lmlr 328 (536)
T KOG2734|consen 322 -LMNLMLR 328 (536)
T ss_pred -HHHHHHH
Confidence 5566666
No 146
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.88 E-value=0.0016 Score=67.54 Aligned_cols=46 Identities=17% Similarity=0.351 Sum_probs=35.1
Q ss_pred ccccCccccCCCceec---CCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 14 FRCPISLDVMKSPVSL---CTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 14 ~~Cpi~~~~~~dPv~~---~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
-.||+|..-+.|-.+. +|+|.||..||..|-. ...+||+|+..|..
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR-~aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR-CAQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhh-hcccCchhhhhhhe
Confidence 4577887777776543 5999999999998876 35679999987654
No 147
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.0055 Score=56.78 Aligned_cols=46 Identities=24% Similarity=0.417 Sum_probs=37.1
Q ss_pred cccCcc-ccCCCcee----cCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 15 RCPISL-DVMKSPVS----LCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 15 ~Cpi~~-~~~~dPv~----~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
.||.|+ +.+.+|-+ -+|||+.|.+|....|..|...||.|+..+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhh
Confidence 488887 34555542 27999999999999999999999999987654
No 148
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.84 E-value=0.0049 Score=59.65 Aligned_cols=48 Identities=15% Similarity=0.306 Sum_probs=39.4
Q ss_pred CCcccccCccccCCCce-----e---cCCCCcccHhhHHHHHhcC------CCCCCCccccc
Q 036338 11 PSFFRCPISLDVMKSPV-----S---LCTGVTYDRASIQRWLDSG------NNTCPATMQVL 58 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv-----~---~~cgh~f~r~cI~~~~~~~------~~~CP~~~~~l 58 (408)
..+..|-||.+...+++ . .+|-|+||..||.+|-... ...||+||.+.
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 45789999999999988 3 4599999999999997432 35799999764
No 149
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=95.79 E-value=0.0019 Score=68.21 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=39.1
Q ss_pred ccccCccccCCCceecCCCCcccHhhHHHHHhcC-CCCCCCcccccCC
Q 036338 14 FRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSG-NNTCPATMQVLQS 60 (408)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~-~~~CP~~~~~l~~ 60 (408)
+.|++|.+ ..+||++.|||.||++|+.+.+... ...||.|+..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 79999999 8889999999999999999987653 3469999866543
No 150
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.0027 Score=43.35 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=37.1
Q ss_pred cccCccccCCCceecCCCCc-ccHhhHHHHHhcCCCCCCCccccc
Q 036338 15 RCPISLDVMKSPVSLCTGVT-YDRASIQRWLDSGNNTCPATMQVL 58 (408)
Q Consensus 15 ~Cpi~~~~~~dPv~~~cgh~-f~r~cI~~~~~~~~~~CP~~~~~l 58 (408)
-|-||.+--.|.|+-.|||- .|..|=.+.|..++..||.||.++
T Consensus 9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi 53 (62)
T KOG4172|consen 9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI 53 (62)
T ss_pred ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence 49999998888888899984 688887777776788999999875
No 151
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.63 E-value=0.13 Score=47.03 Aligned_cols=139 Identities=19% Similarity=0.161 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHH
Q 036338 116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSL 195 (408)
Q Consensus 116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~L 195 (408)
...|+..+..++..-...-+...+ ..+|.|+..+.+.. ..+.+.|..+|..+.. .-... ..++ ++.+
T Consensus 70 ~~~A~~~l~~l~~~l~~~~~~~~~--~~l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~--~~~~~-~~~~-------~~~l 136 (228)
T PF12348_consen 70 SKTACQLLSDLARQLGSHFEPYAD--ILLPPLLKKLGDSK-KFIREAANNALDAIIE--SCSYS-PKIL-------LEIL 136 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHGGG----HHHHHHHHHHHHHHHT--TS-H---HHH-------HHHH
T ss_pred HHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHcccc-HHHHHHHHHHHHHHHH--HCCcH-HHHH-------HHHH
Confidence 456777777777653333333333 57888888887765 1233667777777664 22100 1111 3445
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhhcCcc-hhhHHhh---hcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHH
Q 036338 196 LLVLKQQESVDSRIESLRLLEFIAGDAD-SKVKIAE---RDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKT 269 (408)
Q Consensus 196 v~lL~~~~~~~~~~~Aa~~L~~La~~~~-~~~~i~~---~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~ 269 (408)
...+.+. +..+|..++..|..+...-. ....+.. ....++.+.+.+.++ ++++|++|-.+++.+...-+.+.
T Consensus 137 ~~~~~~K-n~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 137 SQGLKSK-NPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp HHHTT-S--HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHhCC-CHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCHhh
Confidence 5566677 99999999999998865433 2222221 134788888999997 99999999999999977544443
No 152
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.62 E-value=0.013 Score=40.05 Aligned_cols=41 Identities=22% Similarity=0.432 Sum_probs=32.2
Q ss_pred cccCccc--cCCCceecCCC-----CcccHhhHHHHHhcC-CCCCCCcc
Q 036338 15 RCPISLD--VMKSPVSLCTG-----VTYDRASIQRWLDSG-NNTCPATM 55 (408)
Q Consensus 15 ~Cpi~~~--~~~dPv~~~cg-----h~f~r~cI~~~~~~~-~~~CP~~~ 55 (408)
.|-||++ .-.+|.+.||. |.|=++|+.+|+... ..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4888886 44568888885 778899999999754 56799985
No 153
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=95.61 E-value=0.31 Score=47.34 Aligned_cols=64 Identities=17% Similarity=0.158 Sum_probs=44.3
Q ss_pred cChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcc
Q 036338 232 DGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVL 311 (408)
Q Consensus 232 ~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (408)
.-.++.|...+.+. +..++.+|+.+|..+.... ..+++.+...+.++ +..
T Consensus 179 ~~~~~~l~~~l~~~-~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~---------------------~~~ 228 (335)
T COG1413 179 PEAIPLLIELLEDE-DADVRRAAASALGQLGSEN--------VEAADLLVKALSDE---------------------SLE 228 (335)
T ss_pred hhhhHHHHHHHhCc-hHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCC---------------------CHH
Confidence 44677888888876 6688888888888887764 33556666666643 666
Q ss_pred hHHHHHHHHHHHhC
Q 036338 312 ITEKALRLVEILST 325 (408)
Q Consensus 312 ~~~~a~~~L~~L~~ 325 (408)
+...++.+|..+-.
T Consensus 229 vr~~~~~~l~~~~~ 242 (335)
T COG1413 229 VRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHHHhcccCc
Confidence 66666666666543
No 154
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.53 E-value=0.7 Score=49.41 Aligned_cols=167 Identities=16% Similarity=0.180 Sum_probs=105.8
Q ss_pred HhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhcc
Q 036338 109 AISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKR 187 (408)
Q Consensus 109 L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~ 187 (408)
+.+.+.. |.+|++.+-.-....+..- -..+-+++...+.+ .++.+-.-.=|.+.+. ..++ ..++
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~dms-------sLf~dViK~~~trd-~ElKrL~ylYl~~yak--~~P~--~~lL--- 92 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGEDMS-------SLFPDVIKNVATRD-VELKRLLYLYLERYAK--LKPE--LALL--- 92 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCChH-------HHHHHHHHHHHhcC-HHHHHHHHHHHHHHhc--cCHH--HHHH---
Confidence 3343443 7788876554433322222 23444566665443 3222333233334443 2222 2333
Q ss_pred CcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcch
Q 036338 188 DQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRA 267 (408)
Q Consensus 188 ~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n 267 (408)
++..+.+=|++. ++..|..|.+.+..|=. .+.++ -+++++.+++.++ ++.+|+.|+-|+.++=.-+
T Consensus 93 ---avNti~kDl~d~-N~~iR~~AlR~ls~l~~----~el~~---~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld-- 158 (757)
T COG5096 93 ---AVNTIQKDLQDP-NEEIRGFALRTLSLLRV----KELLG---NIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLD-- 158 (757)
T ss_pred ---HHHHHHhhccCC-CHHHHHHHHHHHHhcCh----HHHHH---HHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcC--
Confidence 367777778888 99999987777765531 23332 3689999999987 8899999999999886543
Q ss_pred HHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 268 KTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 268 ~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
+....+.|.+..+..++.+. ++.++..|+.+|..+-.
T Consensus 159 ~~l~~~~g~~~~l~~l~~D~---------------------dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 159 KDLYHELGLIDILKELVADS---------------------DPIVIANALASLAEIDP 195 (757)
T ss_pred HhhhhcccHHHHHHHHhhCC---------------------CchHHHHHHHHHHHhch
Confidence 34455788899999988753 88999999999988754
No 155
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.52 E-value=2 Score=44.34 Aligned_cols=185 Identities=12% Similarity=0.121 Sum_probs=106.0
Q ss_pred hHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHH
Q 036338 159 MLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAET 238 (408)
Q Consensus 159 ~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~L 238 (408)
....++..|..++. ..+.+ .... -...+|.+.+.|.+. .+++|..+-.+|..++..-+|..+.. .+|.|
T Consensus 270 tK~aslellg~m~~--~ap~q-Ls~~---lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~dI~~----~ip~L 338 (569)
T KOG1242|consen 270 TKMASLELLGAMAD--CAPKQ-LSLC---LPDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPDIQK----IIPTL 338 (569)
T ss_pred hHHHHHHHHHHHHH--hchHH-HHHH---HhHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHHHHH----HHHHH
Confidence 34777788887765 33332 2222 468899999999998 99999999999999987766666332 36667
Q ss_pred HHhcccCC--------------------------------------CHHHHHHHHHHHHHhccCcchHHHHHh--cCcHH
Q 036338 239 VKSLSLDS--------------------------------------DRRLIEASLSCLITISSSKRAKTKLIN--HKLIT 278 (408)
Q Consensus 239 v~lL~~~~--------------------------------------~~~~~~~A~~aL~~Ls~~~~n~~~~~~--~G~i~ 278 (408)
++.+.++. +...++.++.++.|+|.--++...+.. .-.+|
T Consensus 339 ld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp 418 (569)
T KOG1242|consen 339 LDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLP 418 (569)
T ss_pred HHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhh
Confidence 66665432 234556666777777664433333221 11223
Q ss_pred HHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHHHHHHHHHhc
Q 036338 279 ELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKTAQEAVSSS 358 (408)
Q Consensus 279 ~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~~~~~~~~~~ 358 (408)
.|=..+. +..+++++.++.+|..+-..- +...+ ...+|.+.+.+ +......-+.
T Consensus 419 ~lk~~~~---------------------d~~PEvR~vaarAL~~l~e~~-g~~~f---~d~~p~l~e~~-~~~k~~~~~~ 472 (569)
T KOG1242|consen 419 GLKENLD---------------------DAVPEVRAVAARALGALLERL-GEVSF---DDLIPELSETL-TSEKSLVDRS 472 (569)
T ss_pred HHHHHhc---------------------CCChhHHHHHHHHHHHHHHHH-Hhhcc---cccccHHHHhh-ccchhhhhhH
Confidence 3333332 236899999999997765422 22222 36677766643 2222222233
Q ss_pred CcHHHHHHHHhhcCCHHHHHHH
Q 036338 359 NVLTKILLLMQSNCTPAVRQMS 380 (408)
Q Consensus 359 g~~~~Ll~ll~~~~~~~~k~~A 380 (408)
|....|..++...+.+...+.-
T Consensus 473 g~aq~l~evl~~~~v~~~~~~~ 494 (569)
T KOG1242|consen 473 GAAQDLSEVLAGLGVEKVEDIL 494 (569)
T ss_pred HHhhhHHHHHhcccchHHHHHH
Confidence 3334444444444434333333
No 156
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.49 E-value=0.0045 Score=45.79 Aligned_cols=47 Identities=17% Similarity=0.393 Sum_probs=23.1
Q ss_pred cccccCccccCC-C---ceec----CCCCcccHhhHHHHHhc--CC--------CCCCCcccccC
Q 036338 13 FFRCPISLDVMK-S---PVSL----CTGVTYDRASIQRWLDS--GN--------NTCPATMQVLQ 59 (408)
Q Consensus 13 ~~~Cpi~~~~~~-d---Pv~~----~cgh~f~r~cI~~~~~~--~~--------~~CP~~~~~l~ 59 (408)
+.-|+||...+. + |+++ .|+++|=..|+.+||.. +. +.||.|+.+++
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999999865 3 5554 49999999999999863 11 25999998764
No 157
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.46 E-value=1 Score=44.45 Aligned_cols=132 Identities=11% Similarity=0.164 Sum_probs=93.6
Q ss_pred HHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHH-hcCCChHHHHHHHHHHHHhhcCcchh
Q 036338 147 LVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVL-KQQESVDSRIESLRLLEFIAGDADSK 225 (408)
Q Consensus 147 Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL-~~~~~~~~~~~Aa~~L~~La~~~~~~ 225 (408)
|-..+.+....+..--++.+|-.+.. .++. |-.++ .+.++..++..| .+..+...+-+...+++.|+.++...
T Consensus 161 l~~~l~~~~~~~~~~~~~rcLQ~ll~--~~ey--R~~~v--~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~a 234 (442)
T KOG2759|consen 161 LKEQLQSSTNNDYIQFAARCLQTLLR--VDEY--RYAFV--IADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAA 234 (442)
T ss_pred HHHHHhccCCCchHHHHHHHHHHHhc--Ccch--hheee--ecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHH
Confidence 33344443322333556667776665 4444 66666 778888999988 43337788899999999999999988
Q ss_pred hHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc-------hHHHHHhcCcHHHHHHHhcc
Q 036338 226 VKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR-------AKTKLINHKLITELGKLITD 286 (408)
Q Consensus 226 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~-------n~~~~~~~G~i~~Lv~lL~~ 286 (408)
+.+.. .+.|+.|++++++..-..+.+-.+.+++||....+ ....|+..+ ++.-++.|..
T Consensus 235 e~~~~-~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~-v~k~l~~L~~ 300 (442)
T KOG2759|consen 235 EKLKR-FDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK-VLKTLQSLEE 300 (442)
T ss_pred HHHhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC-chHHHHHHHh
Confidence 88854 89999999999986566899999999999988662 334455544 5555666653
No 158
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.01 Score=57.03 Aligned_cols=48 Identities=19% Similarity=0.414 Sum_probs=34.2
Q ss_pred cccccCccccCCCc----eecCCCCcccHhhHHHHHhcCC--CCCCCcccccCC
Q 036338 13 FFRCPISLDVMKSP----VSLCTGVTYDRASIQRWLDSGN--NTCPATMQVLQS 60 (408)
Q Consensus 13 ~~~Cpi~~~~~~dP----v~~~cgh~f~r~cI~~~~~~~~--~~CP~~~~~l~~ 60 (408)
.-.|.||-+.+-+- -+-.|||+|.-.|+.+||+... ..||+|+-.++.
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 45699996554331 1234999999999999998642 579999844443
No 159
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.40 E-value=0.0094 Score=55.70 Aligned_cols=44 Identities=25% Similarity=0.491 Sum_probs=38.4
Q ss_pred CcccccCccccCCC---ceecCCCCcccHhhHHHHHhcCC--CCCCCcc
Q 036338 12 SFFRCPISLDVMKS---PVSLCTGVTYDRASIQRWLDSGN--NTCPATM 55 (408)
Q Consensus 12 ~~~~Cpi~~~~~~d---Pv~~~cgh~f~r~cI~~~~~~~~--~~CP~~~ 55 (408)
.-|+||+.++.-.| ||.+.|||...++.+...-++|. +.||.|-
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 34899999999888 99999999999999999887774 6799994
No 160
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.075 Score=54.86 Aligned_cols=184 Identities=15% Similarity=0.179 Sum_probs=111.2
Q ss_pred HHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHH---HHHHhcccccc
Q 036338 102 VKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIR---VLDLILNKIED 176 (408)
Q Consensus 102 i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~---~L~~L~~~~~~ 176 (408)
++.++....+.+.. +..|+..|..|.....-.+.+ ....++.++... +++ ..|+. ..+|...--.+
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~-------Y~~A~~~lsD~~e~VR--~aAvqlv~v~gn~~p~~~e 270 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKAC-------YSRAVKHLSDDYEDVR--KAAVQLVSVWGNRCPAPLE 270 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHH-------HHHHHHHhcchHHHHH--HHHHHHHHHHHhcCCCccc
Confidence 33355555555555 777888887776643222222 233477777665 444 55644 44454410011
Q ss_pred hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc----------------------------------
Q 036338 177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA---------------------------------- 222 (408)
Q Consensus 177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~---------------------------------- 222 (408)
.+.-...+ ...++..+.+.++.. +..+|..|+++|+.+-...
T Consensus 271 ~e~~e~kl---~D~aF~~vC~~v~D~-sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~Ge 346 (823)
T KOG2259|consen 271 RESEEEKL---KDAAFSSVCRAVRDR-SLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGE 346 (823)
T ss_pred chhhhhhh---HHHHHHHHHHHHhcC-ceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCC
Confidence 11101112 235677788888888 8888888888887653211
Q ss_pred -----------------chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc-hHHHHHhcCcHHHHHHHh
Q 036338 223 -----------------DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR-AKTKLINHKLITELGKLI 284 (408)
Q Consensus 223 -----------------~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~-n~~~~~~~G~i~~Lv~lL 284 (408)
+....|.. .|+-..+|.=|.++ --+++++|+..++.|+.+.. -.. .++..|++++
T Consensus 347 wSsGk~~~advpsee~d~~~~siI~-sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMf 419 (823)
T KOG2259|consen 347 WSSGKEWNADVPSEEDDEEEESIIP-SGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMF 419 (823)
T ss_pred cccCccccccCchhhcccccccccc-ccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHh
Confidence 01112222 34455666666654 56899999999999987533 222 2678899999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338 285 TDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT 326 (408)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~ 326 (408)
.+. ...+..+|..+|..++.+
T Consensus 420 NDE---------------------~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 420 NDE---------------------IEVVRLKAIFALTMISVH 440 (823)
T ss_pred ccH---------------------HHHHHHHHHHHHHHHHHH
Confidence 753 788999999999998875
No 161
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.35 E-value=0.011 Score=40.81 Aligned_cols=47 Identities=15% Similarity=0.050 Sum_probs=35.0
Q ss_pred cccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCC
Q 036338 13 FFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKE 62 (408)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~ 62 (408)
+..|=.|...=...++++|||..|+.|-.- +.-.-||.|+.++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~---~rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPG---ERYNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccccCh---hhccCCCCCCCcccCCC
Confidence 445777888878889999999999998321 12235999999886644
No 162
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.24 E-value=1.7 Score=45.79 Aligned_cols=187 Identities=13% Similarity=0.166 Sum_probs=103.2
Q ss_pred HHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHH
Q 036338 102 VKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHL 180 (408)
Q Consensus 102 i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~ 180 (408)
++.|++.|..+++. +..|+..+..|+..+|.|.-.+ -|.+..+|...+.-=++-..+...++|+. -+ +.
T Consensus 183 FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L------AP~ffkllttSsNNWmLIKiiKLF~aLtp--lE-PR- 252 (877)
T KOG1059|consen 183 FPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL------APLFYKLLVTSSNNWVLIKLLKLFAALTP--LE-PR- 252 (877)
T ss_pred HHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc------cHHHHHHHhccCCCeehHHHHHHHhhccc--cC-ch-
Confidence 44566666666665 6666666777766666654322 24455665544311123445555555553 12 21
Q ss_pred HHHHhccCcccHHHHHHHHhcCCChHH-HHHHHHHHH--HhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338 181 MNLILKRDQDCLNSLLLVLKQQESVDS-RIESLRLLE--FIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS 256 (408)
Q Consensus 181 ~~~i~~~~~g~i~~Lv~lL~~~~~~~~-~~~Aa~~L~--~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~ 256 (408)
+ ....+++|..++++. .... .-....++- +++... +.-..+- -++..|-.++.+. |+.++=-++-
T Consensus 253 ---L---gKKLieplt~li~sT-~AmSLlYECvNTVVa~s~s~g~~d~~asiq---LCvqKLr~fieds-DqNLKYlgLl 321 (877)
T KOG1059|consen 253 ---L---GKKLIEPITELMEST-VAMSLLYECVNTVVAVSMSSGMSDHSASIQ---LCVQKLRIFIEDS-DQNLKYLGLL 321 (877)
T ss_pred ---h---hhhhhhHHHHHHHhh-HHHHHHHHHHHHheeehhccCCCCcHHHHH---HHHHHHhhhhhcC-CccHHHHHHH
Confidence 1 345578888888875 2211 111222111 222221 2222221 2567777777775 8888888888
Q ss_pred HHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHh
Q 036338 257 CLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQ 335 (408)
Q Consensus 257 aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 335 (408)
|++.+...+. ..|.+ --+.++..|.+ .|..++-.|+..|..+.. .+|-..|+.
T Consensus 322 am~KI~ktHp---~~Vqa-~kdlIlrcL~D---------------------kD~SIRlrALdLl~gmVs-kkNl~eIVk 374 (877)
T KOG1059|consen 322 AMSKILKTHP---KAVQA-HKDLILRCLDD---------------------KDESIRLRALDLLYGMVS-KKNLMEIVK 374 (877)
T ss_pred HHHHHhhhCH---HHHHH-hHHHHHHHhcc---------------------CCchhHHHHHHHHHHHhh-hhhHHHHHH
Confidence 8888877443 12211 12456777764 388888889988888765 444444443
No 163
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.22 E-value=2.7 Score=40.55 Aligned_cols=193 Identities=17% Similarity=0.195 Sum_probs=103.2
Q ss_pred HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhh-cCChHHHHHHHhhcCc-chhhHHHHHHHHHHhccccc--
Q 036338 101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAK-FDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIE-- 175 (408)
Q Consensus 101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~-~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~-- 175 (408)
.+...+..+...... |..++..|..+...+- ..+++.+ ..-.+..+.+.++.+. ..+ ..|+.++..++...+
T Consensus 44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~~E~--~lA~~~l~Ll~ltlg~g 120 (309)
T PF05004_consen 44 KLKEAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKSEEQ--ALAARALALLALTLGAG 120 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCHHHH--HHHHHHHHHHhhhcCCC
Confidence 355566666665666 8899999888875432 2233322 1134666777777766 333 455566665554212
Q ss_pred chHHHHHHHhccCcccHHHHHHHHhcCC-ChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHH--HHHhcccC------
Q 036338 176 DQQHLMNLILKRDQDCLNSLLLVLKQQE-SVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAE--TVKSLSLD------ 245 (408)
Q Consensus 176 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~~-~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~--Lv~lL~~~------ 245 (408)
++. ..++ ....|.|.+.+..+. +...|..++.+|.-++... ..-..+......+.. ....++.+
T Consensus 121 ~~~--~ei~----~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~ 194 (309)
T PF05004_consen 121 EDS--EEIF----EELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVV 194 (309)
T ss_pred ccH--HHHH----HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccc
Confidence 222 3333 356788888888761 3345556665666554321 111222111123342 22223322
Q ss_pred ---CCHHHHHHHHHHHHHhccC-cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHH
Q 036338 246 ---SDRRLIEASLSCLITISSS-KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVE 321 (408)
Q Consensus 246 ---~~~~~~~~A~~aL~~Ls~~-~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~ 321 (408)
.++.+..+|+.+-.-|... +.....-.-...+|.|+.+|.++ +..++-.|..+|.
T Consensus 195 ~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~---------------------d~~VRiAAGEaiA 253 (309)
T PF05004_consen 195 AAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSD---------------------DVDVRIAAGEAIA 253 (309)
T ss_pred cCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC---------------------CHHHHHHHHHHHH
Confidence 1246777777776655543 33222222245799999999874 6677766665555
Q ss_pred HH
Q 036338 322 IL 323 (408)
Q Consensus 322 ~L 323 (408)
-|
T Consensus 254 ll 255 (309)
T PF05004_consen 254 LL 255 (309)
T ss_pred HH
Confidence 54
No 164
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.20 E-value=0.0092 Score=57.47 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=39.4
Q ss_pred cccCccccCCCceecCCCCcccHhhHHHHHhc-CCCCCCCcccccCCC
Q 036338 15 RCPISLDVMKSPVSLCTGVTYDRASIQRWLDS-GNNTCPATMQVLQSK 61 (408)
Q Consensus 15 ~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~-~~~~CP~~~~~l~~~ 61 (408)
.|-||-+-=+|=-+=+|||-.|-.|+..|... +..+||.||..+..+
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 59999998888666689999999999999865 467899999876543
No 165
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.16 E-value=1.3 Score=45.68 Aligned_cols=90 Identities=21% Similarity=0.194 Sum_probs=71.7
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHH
Q 036338 192 LNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKL 271 (408)
Q Consensus 192 i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~ 271 (408)
++.++.-+... ...++..++.+|..|+......-.... ..+||.|.+.|.+. .+++++++..+|.++++.-+|....
T Consensus 256 lpsll~~l~~~-kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~dI~ 332 (569)
T KOG1242|consen 256 LPSLLGSLLEA-KWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPDIQ 332 (569)
T ss_pred hhhhHHHHHHH-hhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHHHH
Confidence 45555555555 678899999999999887766666666 67999999999986 9999999999999999977766522
Q ss_pred HhcCcHHHHHHHhccC
Q 036338 272 INHKLITELGKLITDG 287 (408)
Q Consensus 272 ~~~G~i~~Lv~lL~~~ 287 (408)
- .+|.|++-+.++
T Consensus 333 ~---~ip~Lld~l~dp 345 (569)
T KOG1242|consen 333 K---IIPTLLDALADP 345 (569)
T ss_pred H---HHHHHHHHhcCc
Confidence 2 678899999865
No 166
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.15 E-value=0.65 Score=50.62 Aligned_cols=158 Identities=16% Similarity=0.031 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHH--HHHhhhChhhhhhhhhcCChHHHHHHHhhcCc--chhhHHHHHHHHHHhcccc
Q 036338 99 QDEVKDIIRVAISKNEDFSENLTKI--VAFAKESDENKTFLAKFDGLVVMLVEILSNVN--DVNMLKQVIRVLDLILNKI 174 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~~~~Al~~L--~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~--~~~~~e~A~~~L~~L~~~~ 174 (408)
.+-.+..+++|+++..|-.-.+.-| +.|+- ++.....+++. ++-...+..|.... +.+-..-|+.+|..+..+
T Consensus 511 VGIFPYVLKLLQS~a~ELrpiLVFIWAKILAv-D~SCQ~dLvKe-~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~n- 587 (1387)
T KOG1517|consen 511 VGIFPYVLKLLQSSARELRPILVFIWAKILAV-DPSCQADLVKE-NGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRN- 587 (1387)
T ss_pred cchHHHHHHHhccchHhhhhhHHHHHHHHHhc-CchhHHHHHhc-cCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcc-
Confidence 4556788889998876622222222 22333 36666677776 66666677776633 323234566677777651
Q ss_pred cchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHH
Q 036338 175 EDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEAS 254 (408)
Q Consensus 175 ~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A 254 (408)
..-. ++... +.+.|..-+..|.++...-.|.-.+-.|+.|=.+.+...-.+...++.+.|+.+|+++ .++++.+|
T Consensus 588 f~lG--Q~acl--~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~-vpEVRaAA 662 (1387)
T KOG1517|consen 588 FKLG--QKACL--NGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDP-VPEVRAAA 662 (1387)
T ss_pred cchh--HHHhc--cccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCc-cHHHHHHH
Confidence 2222 33344 7788888888888752466788899999999777665555565589999999999997 89999999
Q ss_pred HHHHHHhccC
Q 036338 255 LSCLITISSS 264 (408)
Q Consensus 255 ~~aL~~Ls~~ 264 (408)
+-||..+-.+
T Consensus 663 VFALgtfl~~ 672 (1387)
T KOG1517|consen 663 VFALGTFLSN 672 (1387)
T ss_pred HHHHHHHhcc
Confidence 9999998764
No 167
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=95.12 E-value=0.39 Score=48.85 Aligned_cols=121 Identities=13% Similarity=0.155 Sum_probs=94.1
Q ss_pred HHHHHHhhcCcchhhHHhhhcChHHHHHHhc---------ccCCCHHHHHHHHHHHHHhccC-cchHHHHHhcCcHHHHH
Q 036338 212 LRLLEFIAGDADSKVKIAERDGLLAETVKSL---------SLDSDRRLIEASLSCLITISSS-KRAKTKLINHKLITELG 281 (408)
Q Consensus 212 a~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL---------~~~~~~~~~~~A~~aL~~Ls~~-~~n~~~~~~~G~i~~Lv 281 (408)
..+|..++.++.+...+.. ..++..|.++- ....+..+...|+++|.|+... +..|..+++.|..+.++
T Consensus 2 L~~LRiLsRd~~~~~~l~~-~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFT-EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred HHHHHHHccCcccchhhcc-HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 4567788888888888876 55688888877 3334789999999999998775 45788888999999999
Q ss_pred HHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHHhhcCchHHHHHHHHH
Q 036338 282 KLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQGRMEICQDAALLNGVVQKMLK 349 (408)
Q Consensus 282 ~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~~g~i~~lv~~l~~ 349 (408)
..|.... ....+..+.-...++|.-+.. .++.+.+++.+.+++..++..|.+
T Consensus 81 ~~Lk~~~----------------~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~ 133 (446)
T PF10165_consen 81 ERLKNYS----------------DSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALER 133 (446)
T ss_pred HHHHccc----------------ccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHH
Confidence 9998630 001256777888899988874 788899998877888888887665
No 168
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.07 E-value=0.23 Score=50.57 Aligned_cols=192 Identities=19% Similarity=0.230 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHH---HHHHhcccc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIR---VLDLILNKI 174 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~---~L~~L~~~~ 174 (408)
.+.++.++..+++++++ |..|+.=|..+.+-.+ +..+.-.+|++..++.++.+.......+.+.. .|..+.
T Consensus 249 ~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g--~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~--- 323 (675)
T KOG0212|consen 249 DDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPG--RDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV--- 323 (675)
T ss_pred ccchhhccccccCCcHHHHHHHHHHHHHHhcCCC--cchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH---
Confidence 55677888899999988 9999988888876533 23344344777777887776652111132222 222232
Q ss_pred cchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHH
Q 036338 175 EDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEAS 254 (408)
Q Consensus 175 ~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A 254 (408)
+.+..+.-|- -...|..|.+.|.+. ..++|..+..-+..|-....++..... ...++.|++-|.+. +.++...+
T Consensus 324 -s~~~~~~~id--~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql~~h~-~~if~tLL~tLsd~-sd~vvl~~ 397 (675)
T KOG0212|consen 324 -SSERLKEEID--YGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQLLVHN-DSIFLTLLKTLSDR-SDEVVLLA 397 (675)
T ss_pred -hhhhhccccc--hHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchhhhhc-cHHHHHHHHhhcCc-hhHHHHHH
Confidence 2221122231 124578888888888 999999999888888777666666655 67999999999987 77999999
Q ss_pred HHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 255 LSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 255 ~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
+..|.++|.++... +.++.+..||.--. .+..-+...+.-+++.||.
T Consensus 398 L~lla~i~~s~~~~------~~~~fl~sLL~~f~------------------e~~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 398 LSLLASICSSSNSP------NLRKFLLSLLEMFK------------------EDTKLLEVRGNLIIRQLCL 444 (675)
T ss_pred HHHHHHHhcCcccc------cHHHHHHHHHHHHh------------------hhhHHHHhhhhHHHHHHHH
Confidence 99999999987654 34555555553210 1134455666666666664
No 169
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.0074 Score=44.27 Aligned_cols=49 Identities=22% Similarity=0.344 Sum_probs=37.9
Q ss_pred CCcccccCccccCCC-ceec-CCCCcccHhhHHHHHhcC--CCCCCCcccccC
Q 036338 11 PSFFRCPISLDVMKS-PVSL-CTGVTYDRASIQRWLDSG--NNTCPATMQVLQ 59 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~d-Pv~~-~cgh~f~r~cI~~~~~~~--~~~CP~~~~~l~ 59 (408)
|-+-.||-|+-.=.| |.++ -|-|.|-..||.+|+... ...||-|||.++
T Consensus 29 ~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 29 PFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred ccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 445567777766555 8777 499999999999999753 367999998754
No 170
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.01 E-value=0.12 Score=41.12 Aligned_cols=66 Identities=8% Similarity=0.130 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHh
Q 036338 116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLIL 185 (408)
Q Consensus 116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~ 185 (408)
|..-++.|.+++.+++.++..+++. |+||.++..-.-++ .+-..|.|+.++.||+. +..+. +++|.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~-~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e--~n~eN-Q~~I~ 69 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVREL-GGIPLILSCCNIDDHNPFIREWAIFAIRNLCE--GNPEN-QEFIA 69 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHc-CChHHHHHhcCCCcccHHHHHHHHHHHHHHHh--CCHHH-HHHHH
Confidence 3456788999999999999999999 99999998875544 45566999999999997 44332 56554
No 171
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.016 Score=55.47 Aligned_cols=48 Identities=23% Similarity=0.222 Sum_probs=38.5
Q ss_pred CCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCccccc
Q 036338 7 YITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVL 58 (408)
Q Consensus 7 ~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l 58 (408)
..+.|....|-||.+-..+-+.++|||.-| |+..... ...||+|++.+
T Consensus 299 ~~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI 346 (355)
T KOG1571|consen 299 FRELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRI 346 (355)
T ss_pred ccccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHH
Confidence 345677778999999999999999999988 7665543 34599999864
No 172
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=94.87 E-value=0.19 Score=50.90 Aligned_cols=174 Identities=10% Similarity=0.097 Sum_probs=116.7
Q ss_pred HHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHH
Q 036338 103 KDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLM 181 (408)
Q Consensus 103 ~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~ 181 (408)
+.|++.|+.++.- ..-+...+.++.-.-...+..+.+. |.|..|+.++.+.++ ..+.+..++|.++.. ++++..+
T Consensus 434 elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~-~iIdvl~~~v~sKDd-aLqans~wvlrHlmy--ncq~~ek 509 (743)
T COG5369 434 ELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEK-SIIDVLVNLVMSKDD-ALQANSEWVLRHLMY--NCQKNEK 509 (743)
T ss_pred HHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHh-hHHHHHHHHhhcchh-hhhhcchhhhhhhhh--cCcchhh
Confidence 3444444443221 2335556666666666778888888 999999999997762 234888999999886 4433212
Q ss_pred -HHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC----cchhhHHhh---hcChHHHHHHhcccCCCHHHHHH
Q 036338 182 -NLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD----ADSKVKIAE---RDGLLAETVKSLSLDSDRRLIEA 253 (408)
Q Consensus 182 -~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~----~~~~~~i~~---~~g~i~~Lv~lL~~~~~~~~~~~ 253 (408)
+.+ ..-++..++.+...+ ...+++....+|.|+..+ ++.+..... ..-.+..|++.++.. +|-..+.
T Consensus 510 f~~L---akig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~-np~~i~~ 584 (743)
T COG5369 510 FKFL---AKIGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEEN-NPMEILE 584 (743)
T ss_pred hhhH---HhcCHHHHHHHhcCc-ccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhc-Cchhhhh
Confidence 334 456689999998888 899999999999999763 223333221 122456677777765 6667777
Q ss_pred HHHHHHHhccCcchHHHHH--hcCcHHHHHHHhc
Q 036338 254 SLSCLITISSSKRAKTKLI--NHKLITELGKLIT 285 (408)
Q Consensus 254 A~~aL~~Ls~~~~n~~~~~--~~G~i~~Lv~lL~ 285 (408)
.+-.|.+++..+++...++ ....+..+-+.|.
T Consensus 585 ~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~ 618 (743)
T COG5369 585 GCYILVRNAACDDTLDYIVQSQEDMLDSIFEILD 618 (743)
T ss_pred hHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHH
Confidence 7888888888877777766 3555555555554
No 173
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=94.85 E-value=1.2 Score=48.18 Aligned_cols=231 Identities=14% Similarity=0.123 Sum_probs=143.1
Q ss_pred HHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHH-HHHHhcccccchHHH
Q 036338 104 DIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIR-VLDLILNKIEDQQHL 180 (408)
Q Consensus 104 ~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~-~L~~L~~~~~~~~~~ 180 (408)
.+++.+.+++.+ +..|..+|.+++.++-. ..+|.++....+.. ..-.+-+++. +|...+. + .
T Consensus 861 ~iieaf~sp~edvksAAs~ALGsl~vgnl~---------~yLpfil~qi~sqpk~QyLLLhSlkevi~~~sv---d--~- 925 (1233)
T KOG1824|consen 861 TIIEAFNSPSEDVKSAASYALGSLAVGNLP---------KYLPFILEQIESQPKRQYLLLHSLKEVIVSASV---D--G- 925 (1233)
T ss_pred HHHHHcCCChHHHHHHHHHHhhhhhcCchH---------hHHHHHHHHHhcchHhHHHHHHHHHHHHHHhcc---c--h-
Confidence 456677777777 77788888888776432 56777777776644 1111122221 1111110 1 0
Q ss_pred HHHHhccCcccHHHHHHHHhc---CCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338 181 MNLILKRDQDCLNSLLLVLKQ---QESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC 257 (408)
Q Consensus 181 ~~~i~~~~~g~i~~Lv~lL~~---~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a 257 (408)
-...++.+-.+|-. +....+|.-.+..|+.|+..+. ...+|.|=..++++ ++..+..++.|
T Consensus 926 -------~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~ep--------esLlpkL~~~~~S~-a~~~rs~vvsa 989 (1233)
T KOG1824|consen 926 -------LKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEP--------ESLLPKLKLLLRSE-ASNTRSSVVSA 989 (1233)
T ss_pred -------hhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCCh--------HHHHHHHHHHhcCC-Ccchhhhhhhe
Confidence 01223334444421 2144567778888888876543 34678888888887 77788888888
Q ss_pred HHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhc
Q 036338 258 LITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDA 337 (408)
Q Consensus 258 L~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 337 (408)
+.-.-+............-|.-.+.+++++ |..+...|+.++...+. |+...++
T Consensus 990 vKfsisd~p~~id~~lk~~ig~fl~~~~dp---------------------Dl~VrrvaLvv~nSaah---NKpslIr-- 1043 (1233)
T KOG1824|consen 990 VKFSISDQPQPIDPLLKQQIGDFLKLLRDP---------------------DLEVRRVALVVLNSAAH---NKPSLIR-- 1043 (1233)
T ss_pred eeeeecCCCCccCHHHHHHHHHHHHHHhCC---------------------chhHHHHHHHHHHHHHc---cCHhHHH--
Confidence 876555444444444444566778888865 99999999999988866 5555555
Q ss_pred CchHHHHHHHHH--HHHHHH---HhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhhcCcccccccc
Q 036338 338 ALLNGVVQKMLK--TAQEAV---SSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVNYKSCLASYD 399 (408)
Q Consensus 338 g~i~~lv~~l~~--~~~~~~---~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~~c~~~~~ 399 (408)
+..|-|+..|-. .++.+. ++.|-|.+.+ +.+-.+|+.|.+-+--|-. +|++..|
T Consensus 1044 DllpeLLp~Ly~eTkvrkelIreVeMGPFKH~V-----DdgLd~RKaaFEcmytLLd---scld~~d 1102 (1233)
T KOG1824|consen 1044 DLLPELLPLLYSETKVRKELIREVEMGPFKHTV-----DDGLDLRKAAFECMYTLLD---SCLDRLD 1102 (1233)
T ss_pred HHHHHHHHHHHHhhhhhHhhhhhhcccCccccc-----cchHHHHHHHHHHHHHHHH---hhhhhcc
Confidence 356666665555 455554 4667777765 3345689999888887777 6776543
No 174
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.84 E-value=0.24 Score=39.11 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=41.8
Q ss_pred cChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHH--hcCcHHHHHHHhccC
Q 036338 232 DGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLI--NHKLITELGKLITDG 287 (408)
Q Consensus 232 ~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~--~~G~i~~Lv~lL~~~ 287 (408)
.-++++++..+.+. +.++|..|+.+|+|++.... ..+. =..+++.|..++.++
T Consensus 26 ~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 26 DEILPPVLKCFDDQ-DSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCC
Confidence 34899999999997 99999999999999987543 3444 256778888888753
No 175
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=94.82 E-value=0.017 Score=51.86 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=45.7
Q ss_pred ccccCccccCCCceec-CCCCcccHhhHHHHHhc-CCCCCCC--cccccCCCCCcccHHH
Q 036338 14 FRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDS-GNNTCPA--TMQVLQSKEFVPNRTL 69 (408)
Q Consensus 14 ~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~-~~~~CP~--~~~~l~~~~l~~n~~l 69 (408)
.+|||+.+....|++. .|.|.|++..|.++++. ....||. |.+....++++.++.|
T Consensus 190 nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~Il 249 (275)
T COG5627 190 NRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHIL 249 (275)
T ss_pred ccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHH
Confidence 5899999999999876 59999999999999873 2456997 7777777777776655
No 176
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.77 E-value=0.27 Score=51.67 Aligned_cols=151 Identities=14% Similarity=0.054 Sum_probs=99.3
Q ss_pred ChHHHHHHHhhcCc-----ch-hhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHH
Q 036338 142 GLVVMLVEILSNVN-----DV-NMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLL 215 (408)
Q Consensus 142 G~i~~Lv~lL~s~~-----~~-~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L 215 (408)
+++|.|+++|...+ |. .....|-..|..++. . .+..|+ . -++|.+-.-++++ +..-|+.|+.+.
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~-----~-~~D~Iv--~-~Vl~Fiee~i~~p-dwr~reaavmAF 388 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ-----C-VGDDIV--P-HVLPFIEENIQNP-DWRNREAAVMAF 388 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH-----H-hcccch--h-hhHHHHHHhcCCc-chhhhhHHHHHH
Confidence 67899999997632 11 111333334444332 1 123343 1 3344444477788 999999999999
Q ss_pred HHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc-hH-HHHHhcCcHHHHHHHhccCCCCCCC
Q 036338 216 EFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR-AK-TKLINHKLITELGKLITDGHNGNGS 293 (408)
Q Consensus 216 ~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~-n~-~~~~~~G~i~~Lv~lL~~~~~~~~~ 293 (408)
+.+-..++.....-...+++|.++.++.++ +.-+++.++|+|..++..-. .+ ......+.++.|+.=|.+
T Consensus 389 GSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D------- 460 (859)
T KOG1241|consen 389 GSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND------- 460 (859)
T ss_pred HhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-------
Confidence 988877653333222367899999999976 88899999999999987533 11 112234566666666653
Q ss_pred CCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 294 GNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
.+.+..++++++.+|+.
T Consensus 461 ---------------ePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 461 ---------------EPRVASNVCWAFISLAE 477 (859)
T ss_pred ---------------CchHHHHHHHHHHHHHH
Confidence 68999999999999984
No 177
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.75 E-value=0.37 Score=43.10 Aligned_cols=121 Identities=9% Similarity=-0.004 Sum_probs=84.8
Q ss_pred HHHHHHHHHhcccccchHHHHHHHhcc-------------CcccHHHHHHHHhcCC-----ChHHHHHHHHHHHHhhcCc
Q 036338 161 KQVIRVLDLILNKIEDQQHLMNLILKR-------------DQDCLNSLLLVLKQQE-----SVDSRIESLRLLEFIAGDA 222 (408)
Q Consensus 161 e~A~~~L~~L~~~~~~~~~~~~~i~~~-------------~~g~i~~Lv~lL~~~~-----~~~~~~~Aa~~L~~La~~~ 222 (408)
..++.+|.||+. .+... +.++... +...+..|+..+..|. ......+.+.++.|++..+
T Consensus 13 dl~~MLLsNlT~--~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~ 89 (192)
T PF04063_consen 13 DLACMLLSNLTR--SDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP 89 (192)
T ss_pred HHHHHHHHHhcc--chHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH
Confidence 566777778876 33332 3232211 2346788888887621 3345578999999999999
Q ss_pred chhhHHhhhc-Ch--HHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHh---cCcHHHHHHHhc
Q 036338 223 DSKVKIAERD-GL--LAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLIN---HKLITELGKLIT 285 (408)
Q Consensus 223 ~~~~~i~~~~-g~--i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~---~G~i~~Lv~lL~ 285 (408)
+.|..+.... +. +..|+.+.... +..=++-++++|.|+|...+....+.. .+++|.|+--|.
T Consensus 90 ~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 90 EGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 9999998533 33 56666677776 777888899999999999988888885 366666666664
No 178
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.52 E-value=2.9 Score=40.16 Aligned_cols=219 Identities=15% Similarity=0.086 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHH--HHHhhcCcchhhHHHHHHHHHHhccccc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVML--VEILSNVNDVNMLKQVIRVLDLILNKIE 175 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~L--v~lL~s~~~~~~~e~A~~~L~~L~~~~~ 175 (408)
.+-++.++..+...+.+ ...|...|..++.- +..-+.|-+. .....+ ..+--..++. +....+..+..+.. -
T Consensus 127 aeilklildcIggeddeVAkAAiesikrialf-paaleaiFeS-ellDdlhlrnlaakcndi-aRvRVleLIieifS--i 201 (524)
T KOG4413|consen 127 AEILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFES-ELLDDLHLRNLAAKCNDI-ARVRVLELIIEIFS--I 201 (524)
T ss_pred hhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhccc-ccCChHHHhHHHhhhhhH-HHHHHHHHHHHHHh--c
Confidence 44556666677777766 77788888888764 4444444444 333222 2221111111 11223333333332 1
Q ss_pred chHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccC-CCHHHHHHH
Q 036338 176 DQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLD-SDRRLIEAS 254 (408)
Q Consensus 176 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~~A 254 (408)
..+. .+... ++|.+..|..-|+...+.-++.+.......|+..+..++.+.. .|.|..+-.++... ++|--+-.+
T Consensus 202 Spes-aneck--kSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQ-eglIdlicnIIsGadsdPfekfra 277 (524)
T KOG4413|consen 202 SPES-ANECK--KSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQ-EGLIDLICNIISGADSDPFEKFRA 277 (524)
T ss_pred CHHH-HhHhh--hhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcch-hhHHHHHHHHhhCCCCCcHHHHHH
Confidence 2222 33444 7898888888887643777888899999999999999999987 89999988888632 244333223
Q ss_pred HHHHH----HhccCcchHHHHHhc--CcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHH
Q 036338 255 LSCLI----TISSSKRAKTKLINH--KLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQ 328 (408)
Q Consensus 255 ~~aL~----~Ls~~~~n~~~~~~~--G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~ 328 (408)
+.-.. ++...+-.-..+.++ -+|+-..+++.. .|+..++.|..+|..|-++.+
T Consensus 278 lmgfgkffgkeaimdvseeaicealiiaidgsfEmiEm---------------------nDpdaieaAiDalGilGSnte 336 (524)
T KOG4413|consen 278 LMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEM---------------------NDPDAIEAAIDALGILGSNTE 336 (524)
T ss_pred HHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhc---------------------CCchHHHHHHHHHHhccCCcc
Confidence 32222 222222122222221 123333444443 388999999999999998888
Q ss_pred HHHHHHhhcCchHHHHHHHHH
Q 036338 329 GRMEICQDAALLNGVVQKMLK 349 (408)
Q Consensus 329 ~~~~~~~~~g~i~~lv~~l~~ 349 (408)
+..-+... +-|..-.++.+
T Consensus 337 GadlllkT--gppaaehllar 355 (524)
T KOG4413|consen 337 GADLLLKT--GPPAAEHLLAR 355 (524)
T ss_pred hhHHHhcc--CChHHHHHHHH
Confidence 88766653 34444444444
No 179
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.42 E-value=8.7 Score=41.89 Aligned_cols=262 Identities=13% Similarity=0.198 Sum_probs=134.6
Q ss_pred HHHHHHHHHHhcC-----ChhHHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-------chhhHHHHHHHH
Q 036338 100 DEVKDIIRVAISK-----NEDFSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-------DVNMLKQVIRVL 167 (408)
Q Consensus 100 ~~i~~Lv~~L~s~-----~~~~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-------~~~~~e~A~~~L 167 (408)
+.+..++..+.+- ..+....+-.|...+-.-..||+.+.+. |+++.|++.|...- .....|..+.++
T Consensus 117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~-~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~Ii 195 (802)
T PF13764_consen 117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLEL-NALNRLLSVLNRALQANQNSSQAEIAEQLLEII 195 (802)
T ss_pred CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHc-CCHHHHHHHHHHHHhCccccccchHHHHHHHHH
Confidence 3455566666542 1223444444444444458999999999 99999999995311 123345555555
Q ss_pred HHhcccccchHH--HH---HHHhc-----cCcccHHHHHHHHhcC---CChHHHHHHHHHHHHhhcCcchhhHHhhhcCh
Q 036338 168 DLILNKIEDQQH--LM---NLILK-----RDQDCLNSLLLVLKQQ---ESVDSRIESLRLLEFIAGDADSKVKIAERDGL 234 (408)
Q Consensus 168 ~~L~~~~~~~~~--~~---~~i~~-----~~~g~i~~Lv~lL~~~---~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~ 234 (408)
-.+.. +.+. .. ....- ++...|..|++.+.+. .+.......+++|-+|+...+.+..... ..
T Consensus 196 E~ll~---ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv--~~ 270 (802)
T PF13764_consen 196 ESLLS---EANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV--EH 270 (802)
T ss_pred HHHHH---HHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH--HH
Confidence 44432 1110 00 00100 0112266666666643 1567788899999999987754444332 12
Q ss_pred HHHHHHhcccC--CCHHHHHHHHHHHHHhcc----C---cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCC
Q 036338 235 LAETVKSLSLD--SDRRLIEASLSCLITISS----S---KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGS 305 (408)
Q Consensus 235 i~~Lv~lL~~~--~~~~~~~~A~~aL~~Ls~----~---~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~ 305 (408)
+.+.+++=+-+ ...+. +..+..+..++. + ..-|..+++.|++...++.|....- .. ....+
T Consensus 271 F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P--------~~-~~~~s 340 (802)
T PF13764_consen 271 FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFP--------SL-KNTDS 340 (802)
T ss_pred HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCc--------cc-ccCCC
Confidence 44444432211 01111 222444444432 2 2357888899999999998875310 00 00000
Q ss_pred CCC----CcchHHHHHHHHHHHhCC-HHHHHHHHhhcCchHHHHHHHHH------------HHHHHHHhcCcHHHHHHHH
Q 036338 306 GNG----TVLITEKALRLVEILSTT-KQGRMEICQDAALLNGVVQKMLK------------TAQEAVSSSNVLTKILLLM 368 (408)
Q Consensus 306 ~~~----~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~g~i~~lv~~l~~------------~~~~~~~~~g~~~~Ll~ll 368 (408)
... .......++..|.-|+.. ...+.. ... ..++ ++..|-. ...+++.+...+...+.-+
T Consensus 341 ~eWk~~l~~psLp~iL~lL~GLa~gh~~tQ~~-~~~-~~l~-~lH~LEqvss~~~IGslAEnlLeal~~~~~v~~~I~~l 417 (802)
T PF13764_consen 341 PEWKEFLSRPSLPYILRLLRGLARGHEPTQLL-IAE-QLLP-LLHRLEQVSSEEHIGSLAENLLEALAENEDVAKKIQNL 417 (802)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHhcCHHHHHH-HHh-hHHH-HHHHhhcCCCccchHHHHHHHHHHHhcChhHHHHHHHH
Confidence 000 134446788888888864 444444 332 5665 3332332 2334444444456666666
Q ss_pred hhcCCHHHHHHH
Q 036338 369 QSNCTPAVRQMS 380 (408)
Q Consensus 369 ~~~~~~~~k~~A 380 (408)
+.......|++|
T Consensus 418 R~~Tr~ekk~~A 429 (802)
T PF13764_consen 418 RKETRQEKKRLA 429 (802)
T ss_pred HHHHHHHHHHHH
Confidence 544333333333
No 180
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=0.016 Score=59.03 Aligned_cols=62 Identities=29% Similarity=0.360 Sum_probs=41.0
Q ss_pred CCCCcccccCccccCC----CceecCCCCcccHhhHHHHHhcCCCCCC--Ccccc--cCCCCCcccHHHHHHH
Q 036338 9 TVPSFFRCPISLDVMK----SPVSLCTGVTYDRASIQRWLDSGNNTCP--ATMQV--LQSKEFVPNRTLQRLI 73 (408)
Q Consensus 9 ~~~~~~~Cpi~~~~~~----dPv~~~cgh~f~r~cI~~~~~~~~~~CP--~~~~~--l~~~~l~~n~~l~~~I 73 (408)
+..+-+.|+||...|. .||.+-||||.|+.|.+..... +|| ...-. .+.++..-|+++-+.+
T Consensus 7 ~w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp~~~De~~~~~~~~e~p~n~alL~~~ 76 (861)
T KOG3161|consen 7 KWVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCPTKRDEDSSLMQLKEEPRNYALLRRE 76 (861)
T ss_pred hhHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCCCCccccchhcChhhcchhHHHHHhh
Confidence 3445689999966664 3999999999999999987653 566 22111 2224444566654443
No 181
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=94.00 E-value=8.7 Score=39.74 Aligned_cols=51 Identities=18% Similarity=0.239 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcc
Q 036338 116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILN 172 (408)
Q Consensus 116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~ 172 (408)
+.++++.+..++.++ .-..+.+ -+|..|-.+|+++. ..+ -.|+.+|..|+.
T Consensus 281 ~lE~Ar~v~~~~~~n--v~~~~~~--~~vs~L~~fL~s~rv~~r--FsA~Riln~lam 332 (898)
T COG5240 281 FLEAARAVCALSEEN--VGSQFVD--QTVSSLRTFLKSTRVVLR--FSAMRILNQLAM 332 (898)
T ss_pred hHHHHHHHHHHHHhc--cCHHHHH--HHHHHHHHHHhcchHHHH--HHHHHHHHHHHh
Confidence 788999988887765 1223333 24666777777766 334 788889888875
No 182
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=6.2 Score=37.99 Aligned_cols=181 Identities=14% Similarity=0.172 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHhhhChhhh----hhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCccc
Q 036338 116 FSENLTKIVAFAKESDENK----TFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDC 191 (408)
Q Consensus 116 ~~~Al~~L~~la~~~~~~r----~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~ 191 (408)
+.-+.+.+..+..+++.|- ..++.. |..+.++.++...+ ..+...|...+..++. .... ...|- .+..
T Consensus 99 KiLackqigcilEdcDtnaVseillvvNa-eilklildcIgged-deVAkAAiesikrial--fpaa--leaiF--eSel 170 (524)
T KOG4413|consen 99 KILACKQIGCILEDCDTNAVSEILLVVNA-EILKLILDCIGGED-DEVAKAAIESIKRIAL--FPAA--LEAIF--ESEL 170 (524)
T ss_pred hhhhHhhhhHHHhcCchhhHHHHHHHhhh-hHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh--cHHH--HHHhc--cccc
Confidence 6667777777777766442 235577 99999999998776 2234677777777775 3333 33343 4444
Q ss_pred HHHHH--HHHhcCCChHHHHHHHHHHHHhhc-CcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchH
Q 036338 192 LNSLL--LVLKQQESVDSRIESLRLLEFIAG-DADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAK 268 (408)
Q Consensus 192 i~~Lv--~lL~~~~~~~~~~~Aa~~L~~La~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~ 268 (408)
+..+- .+--.- +.-.|.+...+|-.+.+ .++.....-. .|.+..|..=|+...|.-++.......+.|......|
T Consensus 171 lDdlhlrnlaakc-ndiaRvRVleLIieifSiSpesaneckk-SGLldlLeaElkGteDtLVianciElvteLaeteHgr 248 (524)
T KOG4413|consen 171 LDDLHLRNLAAKC-NDIARVRVLELIIEIFSISPESANECKK-SGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGR 248 (524)
T ss_pred CChHHHhHHHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhh-hhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhh
Confidence 44332 222223 56677777777777755 4444444444 7888888887775347778888888899999988888
Q ss_pred HHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 269 TKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 269 ~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
..+.+.|.|+.+-..+... +.++--+-.++.....+-.
T Consensus 249 eflaQeglIdlicnIIsGa-------------------dsdPfekfralmgfgkffg 286 (524)
T KOG4413|consen 249 EFLAQEGLIDLICNIISGA-------------------DSDPFEKFRALMGFGKFFG 286 (524)
T ss_pred hhcchhhHHHHHHHHhhCC-------------------CCCcHHHHHHHHHHHHHhc
Confidence 8888999999998888642 3455555556666555543
No 183
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.036 Score=52.66 Aligned_cols=46 Identities=15% Similarity=0.039 Sum_probs=37.9
Q ss_pred CcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCccccc
Q 036338 12 SFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVL 58 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l 58 (408)
++-+||||-.---+.|..||||.-|+.||.+.+-+ ...|=.|+...
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv 466 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTV 466 (489)
T ss_pred ccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEeccee
Confidence 67899999998888899999999999999999874 34466665443
No 184
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.83 E-value=0.47 Score=35.29 Aligned_cols=66 Identities=17% Similarity=0.233 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHH
Q 036338 250 LIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQG 329 (408)
Q Consensus 250 ~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~ 329 (408)
-.++|++|+.++++.+.....+-+.++|+.++++... .+...++.-|..+|..++.+.++
T Consensus 3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~--------------------s~v~siRGT~fy~Lglis~T~~G 62 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAEN--------------------SPVLSIRGTCFYVLGLISSTEEG 62 (73)
T ss_pred HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHh--------------------CCccchHHHHHHHHHHHhCCHHH
Confidence 3678999999999988877777789999999999975 34778999999999999999999
Q ss_pred HHHHHh
Q 036338 330 RMEICQ 335 (408)
Q Consensus 330 ~~~~~~ 335 (408)
.+.+.+
T Consensus 63 ~~~L~~ 68 (73)
T PF14668_consen 63 AEILDE 68 (73)
T ss_pred HHHHHH
Confidence 887765
No 185
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=93.82 E-value=4.5 Score=39.94 Aligned_cols=229 Identities=18% Similarity=0.210 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHhcCChh--HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhccccc
Q 036338 99 QDEVKDIIRVAISKNED--FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIE 175 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~--~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~ 175 (408)
.+.+..++..+.++.+. |..++-.|..-+. ++..|..+..+ |.+..+++.+.... +...--.++.+++-++.
T Consensus 20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~-g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~--- 94 (361)
T PF07814_consen 20 ADEVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAH-GLVKRLFKALSDAPDDDILALATAAILYVLSR--- 94 (361)
T ss_pred HHHHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHc-CcHHHHHHHhccccchHHHHHHHHHHHHHHcc---
Confidence 57888999999855443 7778888887777 48999999999 99999999996544 32222233444444543
Q ss_pred chHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHH-HHHHHhhcCcchhhHHhhhcChHHHHHHhc---c---c--CC
Q 036338 176 DQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESL-RLLEFIAGDADSKVKIAERDGLLAETVKSL---S---L--DS 246 (408)
Q Consensus 176 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa-~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL---~---~--~~ 246 (408)
+... -.++. +.+.+..++++|............- .-=.++++ +.+ +.+...-+++ . . ..
T Consensus 95 d~~~-~~l~~--~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk-------~~~--~~~~~~~~~~~~~~~~~~~~~~ 162 (361)
T PF07814_consen 95 DGLN-MHLLL--DRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSK-------VQQ--KSRSLCKELLSSGSSWKSPKPP 162 (361)
T ss_pred CCcc-hhhhh--chhHHHHHHHHhccccccccccchhhhhhhhhhH-------HHH--HHHHHHHHHHhccccccccCCc
Confidence 3221 23333 6677777788887110000000000 00001110 000 0111111111 0 0 00
Q ss_pred CHHHHHHHHHHHHHhc--------------c-CcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcc
Q 036338 247 DRRLIEASLSCLITIS--------------S-SKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVL 311 (408)
Q Consensus 247 ~~~~~~~A~~aL~~Ls--------------~-~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (408)
...-+-.|+.+|-.++ . .+.-+..+.+.|++..+++.+.+... .. ............+..
T Consensus 163 ~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~-~~----~~~~~~~~~~~~~l~ 237 (361)
T PF07814_consen 163 ELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHS-SL----SSADAWDDPSLQSLI 237 (361)
T ss_pred ccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhh-hh----hhhhhccccchHHHH
Confidence 1223344555555553 0 11245667788999999999863100 00 000001111122345
Q ss_pred hHHHHHHHHHHHhC-CHHHHHHHHhhc-CchHHHHHHHHH
Q 036338 312 ITEKALRLVEILST-TKQGRMEICQDA-ALLNGVVQKMLK 349 (408)
Q Consensus 312 ~~~~a~~~L~~L~~-~~~~~~~~~~~~-g~i~~lv~~l~~ 349 (408)
..+.++.+|++-+. +++++....... +..+.+...+++
T Consensus 238 ~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~ 277 (361)
T PF07814_consen 238 DLERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLR 277 (361)
T ss_pred HHHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHH
Confidence 67889999999874 566777776542 333444443443
No 186
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.71 E-value=0.1 Score=31.70 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=25.3
Q ss_pred hHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338 234 LLAETVKSLSLDSDRRLIEASLSCLITISS 263 (408)
Q Consensus 234 ~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~ 263 (408)
.+|.++++++++ ++++|.+|+.+|.+++.
T Consensus 1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDP-SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence 478999999997 99999999999999875
No 187
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.64 E-value=2.2 Score=44.60 Aligned_cols=176 Identities=11% Similarity=0.122 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhh--h-hhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTF--L-AKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKI 174 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~--i-~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~ 174 (408)
++-++.|.+.|.+.+.. +..|..+|..+++++.+.-+. . .-..-.+|.++.+.++++ ++...+|+..+-....
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~s-pkiRs~A~~cvNq~i~-- 203 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPS-PKIRSHAVGCVNQFII-- 203 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCC-hhHHHHHHhhhhheee--
Confidence 77888999999988755 777888888888776543221 1 001135888899998886 3344888887755443
Q ss_pred cchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHH
Q 036338 175 EDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEAS 254 (408)
Q Consensus 175 ~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A 254 (408)
... +.++. .-...++.+..+-... ++++|.+.+.++..|......|-.=-- .++++..+..-++. +..+.-.|
T Consensus 204 ~~~---qal~~-~iD~Fle~lFalanD~-~~eVRk~vC~alv~Llevr~dkl~phl-~~IveyML~~tqd~-dE~VALEA 276 (885)
T KOG2023|consen 204 IQT---QALYV-HIDKFLEILFALANDE-DPEVRKNVCRALVFLLEVRPDKLVPHL-DNIVEYMLQRTQDV-DENVALEA 276 (885)
T ss_pred cCc---HHHHH-HHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhcHHhcccch-HHHHHHHHHHccCc-chhHHHHH
Confidence 121 22222 0124566666665556 999999999999998866543333222 56788888877776 77788889
Q ss_pred HHHHHHhccCcchHHHHHh--cCcHHHHHHHh
Q 036338 255 LSCLITISSSKRAKTKLIN--HKLITELGKLI 284 (408)
Q Consensus 255 ~~aL~~Ls~~~~n~~~~~~--~G~i~~Lv~lL 284 (408)
+.....++..+-.+..+.. ...||.|+.-+
T Consensus 277 CEFwla~aeqpi~~~~L~p~l~kliPvLl~~M 308 (885)
T KOG2023|consen 277 CEFWLALAEQPICKEVLQPYLDKLIPVLLSGM 308 (885)
T ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHHHHHccC
Confidence 9999999998865555553 56788887544
No 188
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=93.64 E-value=1.6 Score=46.18 Aligned_cols=172 Identities=13% Similarity=0.180 Sum_probs=108.4
Q ss_pred HHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHH-hcccccchH----H---HHHHHhc----cCccc
Q 036338 125 AFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDL-ILNKIEDQQ----H---LMNLILK----RDQDC 191 (408)
Q Consensus 125 ~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~-L~~~~~~~~----~---~~~~i~~----~~~g~ 191 (408)
.+=.+++.+|...+ +.+..++..|...+ +.+..|.-+..+.+ +.....++. . +-+.+.. .-+-+
T Consensus 724 ~lkde~e~yrkm~~---etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi 800 (1172)
T KOG0213|consen 724 DLKDEPEQYRKMVA---ETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQI 800 (1172)
T ss_pred hhccccHHHHHHHH---HHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHH
Confidence 33345667777766 55888888887666 54433443333222 221000110 0 0011110 01233
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchh---hHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchH
Q 036338 192 LNSLLLVLKQQESVDSRIESLRLLEFIAGDADSK---VKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAK 268 (408)
Q Consensus 192 i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~---~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~ 268 (408)
+..++.+|++. +..+|++|+.++..++..-..| +.++. .|.| |...|... .+++.-.-++||..+......-
T Consensus 801 ~stiL~rLnnk-sa~vRqqaadlis~la~Vlktc~ee~~m~~-lGvv--LyEylgee-ypEvLgsILgAikaI~nvigm~ 875 (1172)
T KOG0213|consen 801 CSTILWRLNNK-SAKVRQQAADLISSLAKVLKTCGEEKLMGH-LGVV--LYEYLGEE-YPEVLGSILGAIKAIVNVIGMT 875 (1172)
T ss_pred HHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHhccHHHHHHH-hhHH--HHHhcCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence 55667888998 9999999999999998643322 34444 5655 78888876 8999998888888887654322
Q ss_pred HHHH-hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 269 TKLI-NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 269 ~~~~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
+..- -.|.+|.|.-.|.+. ...++++....+..++.
T Consensus 876 km~pPi~dllPrltPILknr---------------------heKVqen~IdLvg~Iad 912 (1172)
T KOG0213|consen 876 KMTPPIKDLLPRLTPILKNR---------------------HEKVQENCIDLVGTIAD 912 (1172)
T ss_pred ccCCChhhhcccchHhhhhh---------------------HHHHHHHHHHHHHHHHh
Confidence 1111 467889999999864 78999999999999986
No 189
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.56 E-value=0.026 Score=60.04 Aligned_cols=46 Identities=17% Similarity=0.479 Sum_probs=36.1
Q ss_pred cccccCccccCC--C---ceec--CCCCcccHhhHHHHHhc-CCCCCCCccccc
Q 036338 13 FFRCPISLDVMK--S---PVSL--CTGVTYDRASIQRWLDS-GNNTCPATMQVL 58 (408)
Q Consensus 13 ~~~Cpi~~~~~~--d---Pv~~--~cgh~f~r~cI~~~~~~-~~~~CP~~~~~l 58 (408)
.--|+||--++. | |-.. .|.|.|--+|+.+|+.. ++.+||.||..+
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence 335999998876 2 5544 38899999999999987 456899999654
No 190
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.54 E-value=4.3 Score=43.09 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHhcCC-----hh---HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhh----cCcchhhHHHHHHH
Q 036338 99 QDEVKDIIRVAISKN-----ED---FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILS----NVNDVNMLKQVIRV 166 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~-----~~---~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~----s~~~~~~~e~A~~~ 166 (408)
+..+|.|++.|...+ .+ ...|-.+|..++.- .++ ..+|.++.+++ +++ -+-.+.|+.+
T Consensus 318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---~~D------~Iv~~Vl~Fiee~i~~pd-wr~reaavmA 387 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---VGD------DIVPHVLPFIEENIQNPD-WRNREAAVMA 387 (859)
T ss_pred hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH---hcc------cchhhhHHHHHHhcCCcc-hhhhhHHHHH
Confidence 456788888876521 11 33344445444321 111 45555566654 444 2333888888
Q ss_pred HHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc-hhhHHhhhcChHHHHHHhcccC
Q 036338 167 LDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD-SKVKIAERDGLLAETVKSLSLD 245 (408)
Q Consensus 167 L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~-~~~~i~~~~g~i~~Lv~lL~~~ 245 (408)
++.+.. +.+.....-+ -.+++|.++.++... +.-+|..++|.|+.++..-. .+.--..-.+.+..|+.-|.+
T Consensus 388 FGSIl~--gp~~~~Lt~i---V~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D- 460 (859)
T KOG1241|consen 388 FGSILE--GPEPDKLTPI---VIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND- 460 (859)
T ss_pred HHhhhc--CCchhhhhHH---HhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-
Confidence 887764 3322212233 368999999999987 89999999999999987532 111111113456777777765
Q ss_pred CCHHHHHHHHHHHHHhcc
Q 036338 246 SDRRLIEASLSCLITISS 263 (408)
Q Consensus 246 ~~~~~~~~A~~aL~~Ls~ 263 (408)
.|.+..++.||+.+|+.
T Consensus 461 -ePrva~N~CWAf~~Lae 477 (859)
T KOG1241|consen 461 -EPRVASNVCWAFISLAE 477 (859)
T ss_pred -CchHHHHHHHHHHHHHH
Confidence 68999999999999973
No 191
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=93.50 E-value=0.53 Score=42.09 Aligned_cols=118 Identities=9% Similarity=0.034 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhhcCcchhhHHhh---------------hcChHHHHHHhcccC-----CCHHHHHHHHHHHHHhccCcch
Q 036338 208 RIESLRLLEFIAGDADSKVKIAE---------------RDGLLAETVKSLSLD-----SDRRLIEASLSCLITISSSKRA 267 (408)
Q Consensus 208 ~~~Aa~~L~~La~~~~~~~~i~~---------------~~g~i~~Lv~lL~~~-----~~~~~~~~A~~aL~~Ls~~~~n 267 (408)
-..++.+|.||+..++.+..+.. ....+..|++++..| ....-....+..|.|++..++.
T Consensus 12 adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~g 91 (192)
T PF04063_consen 12 ADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEG 91 (192)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHH
Confidence 34556666666666655553321 133678888877652 2345677889999999999999
Q ss_pred HHHHHh--cCc--HHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhc--CchH
Q 036338 268 KTKLIN--HKL--ITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDA--ALLN 341 (408)
Q Consensus 268 ~~~~~~--~G~--i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~--g~i~ 341 (408)
|..+.+ .+. |..|+-.+.+. +..=+.-+++++.|+|-+.+....+.... +.+|
T Consensus 92 R~~~l~~~~~~~~l~kLl~ft~~~---------------------s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp 150 (192)
T PF04063_consen 92 RQFFLDPQRYDGPLQKLLPFTEHK---------------------SVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILP 150 (192)
T ss_pred HHHHhCchhhhhHHHHHHHHhccC---------------------cHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHH
Confidence 999994 344 55666666542 56667889999999999888888887642 4455
Q ss_pred HHHHH
Q 036338 342 GVVQK 346 (408)
Q Consensus 342 ~lv~~ 346 (408)
.|+--
T Consensus 151 ~LLlP 155 (192)
T PF04063_consen 151 YLLLP 155 (192)
T ss_pred HHHhh
Confidence 44443
No 192
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.49 E-value=0.58 Score=42.38 Aligned_cols=148 Identities=19% Similarity=0.280 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc----chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccH
Q 036338 117 SENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN----DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCL 192 (408)
Q Consensus 117 ~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~----~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i 192 (408)
..|+.-|.-+++ +++.|..+.++ ..--.|-.+|...+ -+-..-.++.+++.|.. +++..+.+.+. ...++
T Consensus 118 cnaL~lLQclaS-hPetk~~Fl~A-hiplflypfLntss~~~~fEyLRltsLGVIgaLvk--Ndsq~vi~fLl--tTeiv 191 (315)
T COG5209 118 CNALNLLQCLAS-HPETKKVFLDA-HIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVK--NDSQYVIKFLL--TTEIV 191 (315)
T ss_pred HHHHHHHHHHhc-Ccchheeeeec-ccceeeHhhhhccccCCccceeeehHHHHHHHHHh--CCCHHHHHHHH--hhhHH
Confidence 356666666666 58899888887 65444555554332 11122568888888887 55554455665 78999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcC-------hHHHHHHhc-ccCCCHHHHHHHHHHHHHhccC
Q 036338 193 NSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDG-------LLAETVKSL-SLDSDRRLIEASLSCLITISSS 264 (408)
Q Consensus 193 ~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g-------~i~~Lv~lL-~~~~~~~~~~~A~~aL~~Ls~~ 264 (408)
|.+++++..| +.-.|.-|+.++..+-.++..-..|..+-. ++..++.-+ ..+ +.+..+.+.++-..||..
T Consensus 192 PLcLrIme~g-SElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~-~~RLlKh~iRcYlRLsd~ 269 (315)
T COG5209 192 PLCLRIMELG-SELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLG-STRLLKHAIRCYLRLSDK 269 (315)
T ss_pred HHHHHHHHhh-hHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHheeecCC
Confidence 9999999999 999999999999988888766655543222 222233322 234 678999999999999998
Q ss_pred cchHHHHH
Q 036338 265 KRAKTKLI 272 (408)
Q Consensus 265 ~~n~~~~~ 272 (408)
+..|..+-
T Consensus 270 p~aR~lL~ 277 (315)
T COG5209 270 PHARALLS 277 (315)
T ss_pred HhHHHHHh
Confidence 87776554
No 193
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=93.45 E-value=9 Score=38.13 Aligned_cols=99 Identities=14% Similarity=0.207 Sum_probs=77.2
Q ss_pred cccHHHHHHHHhcCC--ChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcc-cC--CCHHHHHHHHHHHHHhcc
Q 036338 189 QDCLNSLLLVLKQQE--SVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLS-LD--SDRRLIEASLSCLITISS 263 (408)
Q Consensus 189 ~g~i~~Lv~lL~~~~--~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~-~~--~~~~~~~~A~~aL~~Ls~ 263 (408)
...+..|-.++++.. ...+-..|+.++..+-.++.....+....|.++.+++.+. .+ .+.++...--.+|..||.
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 455666666666531 2456677888888888777666666555999999999888 43 356888888889999999
Q ss_pred CcchHHHHHhcCcHHHHHHHhccC
Q 036338 264 SKRAKTKLINHKLITELGKLITDG 287 (408)
Q Consensus 264 ~~~n~~~~~~~G~i~~Lv~lL~~~ 287 (408)
+....+.+.+.+.++.+++.+.++
T Consensus 185 N~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 185 NNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred CHHHHHHHHhcChHHHHHHHhCCH
Confidence 999999999999999999999874
No 194
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=93.44 E-value=1.1 Score=44.96 Aligned_cols=133 Identities=17% Similarity=0.224 Sum_probs=95.7
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhhcCcc----hhhHHhhhcChHHHHHHhcccCC------CHHHHHHHHHHHHHhccC
Q 036338 195 LLLVLKQQESVDSRIESLRLLEFIAGDAD----SKVKIAERDGLLAETVKSLSLDS------DRRLIEASLSCLITISSS 264 (408)
Q Consensus 195 Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~----~~~~i~~~~g~i~~Lv~lL~~~~------~~~~~~~A~~aL~~Ls~~ 264 (408)
+..++... +.+.|-.|...+..+.+++| +|..+.+ .=+++.+-++|.++. +.--+.-+...|..+|+.
T Consensus 16 ~~~L~~~k-~D~e~fAaLllVTK~vK~~Di~a~~kk~vfe-AVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 16 CLKLLKGK-RDEERFAALLLVTKFVKNDDIVALNKKLVFE-AVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred HHHHhccc-ChHHHHHHHHHHHHHhcccchhhhhhhhHHH-HhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 44555555 77777777777788887653 6777887 556789999997541 234566778888899998
Q ss_pred cc--hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHH
Q 036338 265 KR--AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNG 342 (408)
Q Consensus 265 ~~--n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~ 342 (408)
++ ....|++ .||.|++.++-. .+.+- .++..+.+.+-..|...+..+.+.+.+... |+++.
T Consensus 94 pElAsh~~~v~--~IP~llev~~~~-----------~d~d~---e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~-G~~~~ 156 (698)
T KOG2611|consen 94 PELASHEEMVS--RIPLLLEVMSKG-----------IDTDY---EDNLIMLEDCYECLYLVATAEAGLMTLIAS-GGLRV 156 (698)
T ss_pred hhhccCHHHHH--hhhHHHHHHHhc-----------CCCch---hhhHHHHHHHHHHHHHHhcCCchhHHHHhc-CchHH
Confidence 86 4555654 589999999742 00000 113458899999999999999999999885 89998
Q ss_pred HHHH
Q 036338 343 VVQK 346 (408)
Q Consensus 343 lv~~ 346 (408)
+-++
T Consensus 157 ~~Q~ 160 (698)
T KOG2611|consen 157 IAQM 160 (698)
T ss_pred HHHH
Confidence 8763
No 195
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=93.20 E-value=6.2 Score=38.23 Aligned_cols=78 Identities=22% Similarity=0.265 Sum_probs=59.4
Q ss_pred CcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcch
Q 036338 188 DQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRA 267 (408)
Q Consensus 188 ~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n 267 (408)
+.-.++.+...+... +..+|..|+.+|..+.... ..+.+.+...+.++ +..++..++.+|..+-...
T Consensus 178 ~~~~~~~l~~~l~~~-~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~vr~~~~~~l~~~~~~~-- 244 (335)
T COG1413 178 DPEAIPLLIELLEDE-DADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLEVRKAALLALGEIGDEE-- 244 (335)
T ss_pred ChhhhHHHHHHHhCc-hHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHHHHHHHHHHhcccCcch--
Confidence 456678888888888 8889999999999887554 24568888888887 8889998888887765543
Q ss_pred HHHHHhcCcHHHHHHHhcc
Q 036338 268 KTKLINHKLITELGKLITD 286 (408)
Q Consensus 268 ~~~~~~~G~i~~Lv~lL~~ 286 (408)
.++.++..+.+
T Consensus 245 --------~~~~l~~~l~~ 255 (335)
T COG1413 245 --------AVDALAKALED 255 (335)
T ss_pred --------hHHHHHHHHhc
Confidence 45666666654
No 196
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=93.17 E-value=1.6 Score=37.71 Aligned_cols=144 Identities=14% Similarity=0.136 Sum_probs=83.5
Q ss_pred HHHHHHhc-C-Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHH
Q 036338 104 DIIRVAIS-K-NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHL 180 (408)
Q Consensus 104 ~Lv~~L~s-~-~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~ 180 (408)
.++..|-. . ..+ |..++-.+..+. +..++...+. .-..+-.++.... ....-.++.+|..|-. ...+-.
T Consensus 7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~--~~~~i~~~~~~~~-~d~~i~~~~~l~~lfp--~~~dv~ 78 (157)
T PF11701_consen 7 TLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK--ISDFIESLLDEGE-MDSLIIAFSALTALFP--GPPDVG 78 (157)
T ss_dssp HHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH--HHHHHHHHHCCHH-CCHHHHHHHHHHHHCT--TTHHHH
T ss_pred HHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH--HHHHHHHHHcccc-chhHHHHHHHHHHHhC--CCHHHH
Confidence 34555443 2 223 556665555553 2333333321 1122333333333 1123566666666654 333333
Q ss_pred HHHHhccCcccHHHHHHHHh--cCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHH-HHHHHHHH
Q 036338 181 MNLILKRDQDCLNSLLLVLK--QQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRR-LIEASLSC 257 (408)
Q Consensus 181 ~~~i~~~~~g~i~~Lv~lL~--~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~-~~~~A~~a 257 (408)
..++. ..|.++.++.+.. +. +...+..++.+|..-|.+...|..|.. . +++-|-++++.+.+.. .+..|+-.
T Consensus 79 ~~l~~--~eg~~~~l~~~~~~~~~-~~~~~~~~lell~aAc~d~~~r~~I~~-~-~~~~L~~~~~~~~~~~~ir~~A~v~ 153 (157)
T PF11701_consen 79 SELFL--SEGFLESLLPLASRKSK-DRKVQKAALELLSAACIDKSCRTFISK-N-YVSWLKELYKNSKDDSEIRVLAAVG 153 (157)
T ss_dssp HHHCC--TTTHHHHHHHHHH-CTS--HHHHHHHHHHHHHHTTSHHHHHCCHH-H-CHHHHHHHTTTCC-HH-CHHHHHHH
T ss_pred HHHHh--hhhHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHccHHHHHHHHH-H-HHHHHHHHHccccchHHHHHHHHHH
Confidence 56666 8899999999998 55 777777777777777777777777765 4 5899999997653555 66767666
Q ss_pred HHH
Q 036338 258 LIT 260 (408)
Q Consensus 258 L~~ 260 (408)
|..
T Consensus 154 L~K 156 (157)
T PF11701_consen 154 LCK 156 (157)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 197
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.06 E-value=0.063 Score=50.79 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=34.9
Q ss_pred cccCccccCCC--cee--cCCCCcccHhhHHHHHhcCCCCCCCcccccCCCC
Q 036338 15 RCPISLDVMKS--PVS--LCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKE 62 (408)
Q Consensus 15 ~Cpi~~~~~~d--Pv~--~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~ 62 (408)
.||+|.+.|.- --. -+||+..|+-|-...-++-+..||.||..+....
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den 67 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN 67 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence 49999998854 222 2699999999965544444678999998776543
No 198
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.01 E-value=8.9 Score=41.05 Aligned_cols=170 Identities=13% Similarity=0.155 Sum_probs=106.2
Q ss_pred Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-----chhhHHHHHHHHHHhcccccchHHHHHHHhc
Q 036338 113 NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-----DVNMLKQVIRVLDLILNKIEDQQHLMNLILK 186 (408)
Q Consensus 113 ~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-----~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~ 186 (408)
++. |.+.++.|+-+-.+++...+.+-+. |.++....+ .--++.+++.++..+- .+..++. +
T Consensus 247 dPFLQi~iLrlLriLGq~d~daSd~M~Di------LaqvatntdsskN~GnAILYE~V~TI~~I~----~~~~Lrv-l-- 313 (866)
T KOG1062|consen 247 DPFLQIRILRLLRILGQNDADASDLMNDI------LAQVATNTDSSKNAGNAILYECVRTIMDIR----SNSGLRV-L-- 313 (866)
T ss_pred chHHHHHHHHHHHHhcCCCccHHHHHHHH------HHHHHhcccccccchhHHHHHHHHHHHhcc----CCchHHH-H--
Confidence 344 7778888887777766666666554 455554433 1123455555554442 1221121 1
Q ss_pred cCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc
Q 036338 187 RDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR 266 (408)
Q Consensus 187 ~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~ 266 (408)
++..|-++|.+. +...|--|...|..+...+++...= + =..+++.|++. |...++.|+..++.|... .
T Consensus 314 ----ainiLgkFL~n~-d~NirYvaLn~L~r~V~~d~~avqr---H--r~tIleCL~Dp-D~SIkrralELs~~lvn~-~ 381 (866)
T KOG1062|consen 314 ----AINILGKFLLNR-DNNIRYVALNMLLRVVQQDPTAVQR---H--RSTILECLKDP-DVSIKRRALELSYALVNE-S 381 (866)
T ss_pred ----HHHHHHHHhcCC-ccceeeeehhhHHhhhcCCcHHHHH---H--HHHHHHHhcCC-cHHHHHHHHHHHHHHhcc-c
Confidence 255556666666 6677777777777766555433322 2 25678899987 889999999999988765 3
Q ss_pred hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC--CHHHHHHH
Q 036338 267 AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST--TKQGRMEI 333 (408)
Q Consensus 267 n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~--~~~~~~~~ 333 (408)
|...|+ .-|++.|.+. +...+...+.-+..++. .|++|.-|
T Consensus 382 Nv~~mv-----~eLl~fL~~~---------------------d~~~k~~~as~I~~laEkfaP~k~W~i 424 (866)
T KOG1062|consen 382 NVRVMV-----KELLEFLESS---------------------DEDFKADIASKIAELAEKFAPDKRWHI 424 (866)
T ss_pred cHHHHH-----HHHHHHHHhc---------------------cHHHHHHHHHHHHHHHHhcCCcchhHH
Confidence 555555 4588888753 77888877777777775 46666644
No 199
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.99 E-value=0.047 Score=54.16 Aligned_cols=50 Identities=16% Similarity=0.306 Sum_probs=37.4
Q ss_pred CCcccccCccccCC-----------------CceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 11 PSFFRCPISLDVMK-----------------SPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~-----------------dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
...--|+||..... +=+.+||-|.|-+.|+++|.+.-+-.||.||.++.+
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 34456999975321 123458999999999999998555679999998753
No 200
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=92.97 E-value=0.34 Score=39.62 Aligned_cols=73 Identities=10% Similarity=0.106 Sum_probs=55.3
Q ss_pred cccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338 189 QDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS 263 (408)
Q Consensus 189 ~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~ 263 (408)
.-.+..|+++|....+..+..-|+.-|+.++... ..|..+.. .|+-..++.++.++ +++++..|+.|+-.|..
T Consensus 42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~-lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEK-LGAKERVMELMNHE-DPEVRYEALLAVQKLMV 115 (119)
T ss_dssp GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHH-HSHHHHHHHHTS-S-SHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHh-cChHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 3457889999954326677778888999888764 55555544 89999999999997 99999999999887643
No 201
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=92.90 E-value=0.38 Score=37.98 Aligned_cols=68 Identities=16% Similarity=0.094 Sum_probs=50.9
Q ss_pred ccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 036338 190 DCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITI 261 (408)
Q Consensus 190 g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~L 261 (408)
-.+++++..+... +..+|..|+.+|.+++........- .-..+++.|.+++.+. ++.++..| ..|-+|
T Consensus 27 ~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~-d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 27 EILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADP-DENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCC-chhHHHHH-HHHHHH
Confidence 5689999999998 9999999999999999764332221 2256889999999886 77766554 555544
No 202
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.86 E-value=3.4 Score=42.30 Aligned_cols=135 Identities=10% Similarity=0.152 Sum_probs=89.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCC---CHHHHHHHHHHHHHhccCcchHH
Q 036338 193 NSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDS---DRRLIEASLSCLITISSSKRAKT 269 (408)
Q Consensus 193 ~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~---~~~~~~~A~~aL~~Ls~~~~n~~ 269 (408)
..+.+++.+| +...|..|..-|..|+.+......+.. ..++..|.+++.++. +.......++|+..|-.+.-...
T Consensus 86 ~~i~e~l~~~-~~~~~~~a~k~l~sls~d~~fa~efi~-~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 86 KRIMEILTEG-NNISKMEALKELDSLSLDPTFAEEFIR-CSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHh-cchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 4566788899 888888899999999999887777766 567899999999873 24566667777766654433333
Q ss_pred HHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHH
Q 036338 270 KLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKML 348 (408)
Q Consensus 270 ~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~ 348 (408)
..+....|.....+..-. -.+..+...|+..|.++..+.....+.+.+.--+..|+.+|.
T Consensus 164 ~~~~~~fV~~~a~~V~~~-------------------~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq 223 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAK-------------------REDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQ 223 (713)
T ss_pred eecccHHHHHHHHHHhhh-------------------hhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHH
Confidence 333333333444443211 235677899999999998765544444443355566666443
No 203
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=92.79 E-value=3 Score=44.80 Aligned_cols=103 Identities=17% Similarity=0.153 Sum_probs=74.2
Q ss_pred HHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc
Q 036338 144 VVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD 223 (408)
Q Consensus 144 i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~ 223 (408)
+..+.+=|++++ +..+-.|+.+|..+- + .+++ ..+++++.+++.++ +..+|..|+-+|.++=.-+
T Consensus 94 vNti~kDl~d~N-~~iR~~AlR~ls~l~----~----~el~----~~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld- 158 (757)
T COG5096 94 VNTIQKDLQDPN-EEIRGFALRTLSLLR----V----KELL----GNIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLD- 158 (757)
T ss_pred HHHHHhhccCCC-HHHHHHHHHHHHhcC----h----HHHH----HHHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcC-
Confidence 344444444444 333477777777652 2 2333 35689999999999 9999999999999886433
Q ss_pred hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccC
Q 036338 224 SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSS 264 (408)
Q Consensus 224 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~ 264 (408)
+..+.+ .|.+..+..++.+. +|.+..+|+.+|..+...
T Consensus 159 -~~l~~~-~g~~~~l~~l~~D~-dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 159 -KDLYHE-LGLIDILKELVADS-DPIVIANALASLAEIDPE 196 (757)
T ss_pred -Hhhhhc-ccHHHHHHHHhhCC-CchHHHHHHHHHHHhchh
Confidence 233334 77889899999886 999999999999998664
No 204
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=92.78 E-value=1.5 Score=41.01 Aligned_cols=98 Identities=13% Similarity=0.097 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhhcC-cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhc-cCcchHHHHHhcCcHHHHHHHh
Q 036338 207 SRIESLRLLEFIAGD-ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITIS-SSKRAKTKLINHKLITELGKLI 284 (408)
Q Consensus 207 ~~~~Aa~~L~~La~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls-~~~~n~~~~~~~G~i~~Lv~lL 284 (408)
....|..+|.-++.. +..+..... ...+..|+++|....++.++.+++.+|..+. .++.|...+-+.+|+..++.++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r-~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHR-EQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhh-hhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 456678888877764 556666665 8899999999965447889999999988754 5677888888999999999999
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHh
Q 036338 285 TDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILS 324 (408)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~ 324 (408)
++. ..+..++-+.+..|.-..
T Consensus 186 k~~-------------------~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 186 KSK-------------------STDRELRLKCIEFLYFYL 206 (257)
T ss_pred ccc-------------------cccHHHhHHHHHHHHHHH
Confidence 875 346666666666665544
No 205
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.58 E-value=16 Score=38.75 Aligned_cols=91 Identities=12% Similarity=0.153 Sum_probs=65.0
Q ss_pred cccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchH
Q 036338 189 QDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAK 268 (408)
Q Consensus 189 ~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~ 268 (408)
.|.+..|++-..+. +..+|-+.+.+|..+.........-.- .+....|..-|.+. .+.++..|+.||..+=..+.+-
T Consensus 84 ~~~f~hlLRg~Esk-dk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESK-DKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDR-EPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred HHHHHHHHhcccCc-chhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhcc-CchHHHHHHHHHHHHhcCCCCC
Confidence 36677777777777 889999999999998864333333333 46777787777775 7889999999999986432210
Q ss_pred HHHHhcCcHHHHHHHhcc
Q 036338 269 TKLINHKLITELGKLITD 286 (408)
Q Consensus 269 ~~~~~~G~i~~Lv~lL~~ 286 (408)
+..++..++.+++.
T Consensus 161 ----e~~v~n~l~~liqn 174 (892)
T KOG2025|consen 161 ----ECPVVNLLKDLIQN 174 (892)
T ss_pred ----cccHHHHHHHHHhc
Confidence 23466788899986
No 206
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=92.55 E-value=13 Score=37.48 Aligned_cols=110 Identities=14% Similarity=0.166 Sum_probs=80.2
Q ss_pred cHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-cch-------------hhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338 191 CLNSLLLVLKQQESVDSRIESLRLLEFIAGD-ADS-------------KVKIAERDGLLAETVKSLSLDSDRRLIEASLS 256 (408)
Q Consensus 191 ~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~-~~~-------------~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~ 256 (408)
.+..|+.+|.+ .+....|+..+.-|..+ ++. |..+.. -.+|.|++-.+.. +...+..-+.
T Consensus 272 ~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~~~-~~~~k~~yL~ 345 (415)
T PF12460_consen 272 LLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFKEA-DDEIKSNYLT 345 (415)
T ss_pred HHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHhhc-ChhhHHHHHH
Confidence 36667777754 46778899999888766 322 455554 3688888888875 5568888999
Q ss_pred HHHHhccCcchHHHHHh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCH
Q 036338 257 CLITISSSKRAKTKLIN-HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTK 327 (408)
Q Consensus 257 aL~~Ls~~~~n~~~~~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~ 327 (408)
||..+..+-.....+-+ ...+|.|++-|+.+ +..++..++.+|..+....
T Consensus 346 ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~---------------------~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 346 ALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP---------------------DADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC---------------------CHHHHHHHHHHHHHHHHcC
Confidence 99999886554333334 56889999999754 6779999999999987643
No 207
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.51 E-value=2.9 Score=40.03 Aligned_cols=161 Identities=14% Similarity=0.166 Sum_probs=104.6
Q ss_pred HHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhh--
Q 036338 149 EILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKV-- 226 (408)
Q Consensus 149 ~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~-- 226 (408)
..+++.+ ..+.+.|+..|+.++. -+.+. ....++.+...+..+ +.+++..|..+|..+........
T Consensus 34 P~v~~~~-~~vR~~al~cLGl~~L--ld~~~--------a~~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~~~ 101 (298)
T PF12719_consen 34 PAVQSSD-PAVRELALKCLGLCCL--LDKEL--------AKEHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDIFD 101 (298)
T ss_pred HHhcCCC-HHHHHHHHHHHHHHHH--hChHH--------HHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchhcc
Confidence 4455555 3344999999998876 44331 123467788888888 99999999999998875432111
Q ss_pred -------HHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCC
Q 036338 227 -------KIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGN 299 (408)
Q Consensus 227 -------~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~ 299 (408)
.... ...+..+.+.|.+. +++++..|+..+..|-..+.... ...++..|+-+-.++.
T Consensus 102 ~~~~~~~~~~~-~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~----------- 165 (298)
T PF12719_consen 102 SESDNDESVDS-KSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPS----------- 165 (298)
T ss_pred chhccCccchH-hHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcc-----------
Confidence 1112 45778888888887 88999999999999876554222 2445666776666651
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHHhhcCchHHHHH
Q 036338 300 GNGNGSGNGTVLITEKALRLVEILST-TKQGRMEICQDAALLNGVVQ 345 (408)
Q Consensus 300 ~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~~g~i~~lv~ 345 (408)
...+..++..-...+-..+. ++++++.+.. ..+|.+-.
T Consensus 166 ------t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~--~f~~~l~~ 204 (298)
T PF12719_consen 166 ------TEDNQRLRQCLSVFFPVYASSSPENQERLAE--AFLPTLRT 204 (298)
T ss_pred ------cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHH--HHHHHHHH
Confidence 12244666666666666665 4666665543 45565444
No 208
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=91.95 E-value=5.6 Score=36.75 Aligned_cols=108 Identities=17% Similarity=0.182 Sum_probs=81.6
Q ss_pred HHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcc----cCCCHHHHHHHHHHHHHhccCcc--hHHHHHhcCcHHHHHH
Q 036338 209 IESLRLLEFIAGDADSKVKIAERDGLLAETVKSLS----LDSDRRLIEASLSCLITISSSKR--AKTKLINHKLITELGK 282 (408)
Q Consensus 209 ~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~----~~~~~~~~~~A~~aL~~Ls~~~~--n~~~~~~~G~i~~Lv~ 282 (408)
.+|..+|.-++++++.|..+.. +-+=-.|-.+|. +....-.+-.+++.+..|..+++ ....+...++||..+.
T Consensus 97 cnaL~LlQcvASHpdTr~~FL~-A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 97 CNALALLQCVASHPDTRRAFLR-AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHhcCcchHHHHHH-ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 5677777788999999988876 333223333443 33345688899999999998665 5566668999999999
Q ss_pred HhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcC
Q 036338 283 LITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAA 338 (408)
Q Consensus 283 lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g 338 (408)
.+... +..-+..|..++..+-.++.|-..++....
T Consensus 176 ime~G---------------------SelSKtvA~fIlqKIlldD~GL~YiCqt~e 210 (293)
T KOG3036|consen 176 IMESG---------------------SELSKTVATFILQKILLDDVGLYYICQTAE 210 (293)
T ss_pred HHhcc---------------------cHHHHHHHHHHHHHHhhccccHHHHHHhHH
Confidence 99753 678888999999999888888888876543
No 209
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.87 E-value=0.31 Score=29.49 Aligned_cols=28 Identities=32% Similarity=0.302 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhc
Q 036338 192 LNSLLLVLKQQESVDSRIESLRLLEFIAG 220 (408)
Q Consensus 192 i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~ 220 (408)
+|.+++++++. +.++|..|+.+|..++.
T Consensus 2 lp~l~~~l~D~-~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDP-SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence 78899999999 99999999999999875
No 210
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.63 E-value=3.6 Score=42.19 Aligned_cols=196 Identities=14% Similarity=0.145 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHH----HHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhccc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLT----KIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNK 173 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~----~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~ 173 (408)
++-..-|...|+..+.+ +.-+=. -|+.+..+ +. ..+.+..++.++.=+.++. +..+..|+.-+..+..
T Consensus 207 ~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~-P~----s~d~~~~i~vlv~~l~ss~-~~iq~~al~Wi~efV~- 279 (675)
T KOG0212|consen 207 PSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSS-PS----SMDYDDMINVLVPHLQSSE-PEIQLKALTWIQEFVK- 279 (675)
T ss_pred hHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcC-cc----ccCcccchhhccccccCCc-HHHHHHHHHHHHHHhc-
Confidence 44455666677776666 422222 22222222 22 1134466777888777766 2233777766655543
Q ss_pred ccchHHHHHHHhccCcccHHHHHHHHhcCCCh-HHHHHHHHHH---HHhhcCcchhhHHhhhcChHHHHHHhcccCCCHH
Q 036338 174 IEDQQHLMNLILKRDQDCLNSLLLVLKQQESV-DSRIESLRLL---EFIAGDADSKVKIAERDGLLAETVKSLSLDSDRR 249 (408)
Q Consensus 174 ~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~-~~~~~Aa~~L---~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~ 249 (408)
+.. +..+. .-+|++..++..+.+. .. ..++.+..+- ..+...+..+..+-- ...+..|.+.+.++ ..+
T Consensus 280 i~g----~~~l~-~~s~il~~iLpc~s~~-e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~-~~ii~vl~~~l~~~-~~~ 351 (675)
T KOG0212|consen 280 IPG----RDLLL-YLSGILTAILPCLSDT-EEMSIKEYAQMVNGLLLKLVSSERLKEEIDY-GSIIEVLTKYLSDD-REE 351 (675)
T ss_pred CCC----cchhh-hhhhhhhhcccCCCCC-ccccHHHHHHHHHHHHHHHHhhhhhccccch-HHHHHHHHHHhhcc-hHH
Confidence 112 22222 1456666666666655 33 3555554433 233333333333432 34788888889886 788
Q ss_pred HHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHH
Q 036338 250 LIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQG 329 (408)
Q Consensus 250 ~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~ 329 (408)
.+-+++.-+.-|-....+.-........+.|+.-|++. +..++..++..|.++|.+++.
T Consensus 352 tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~---------------------sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 352 TRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDR---------------------SDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred HHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCc---------------------hhHHHHHHHHHHHHHhcCccc
Confidence 99999998888877777776666788999999999854 889999999999999987654
Q ss_pred H
Q 036338 330 R 330 (408)
Q Consensus 330 ~ 330 (408)
.
T Consensus 411 ~ 411 (675)
T KOG0212|consen 411 P 411 (675)
T ss_pred c
Confidence 3
No 211
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.52 E-value=6.2 Score=34.64 Aligned_cols=136 Identities=14% Similarity=0.129 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHH
Q 036338 116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSL 195 (408)
Q Consensus 116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~L 195 (408)
|..++..+..++...+.. ++ ..+|.+...|.+++ +.+...|+.+|..|.. .+. +. -+...+..+
T Consensus 5 R~n~i~~l~DL~~r~~~~----ve--~~~~~l~~~L~D~~-~~VR~~al~~Ls~Li~--~d~------ik-~k~~l~~~~ 68 (178)
T PF12717_consen 5 RNNAIIALGDLCIRYPNL----VE--PYLPNLYKCLRDED-PLVRKTALLVLSHLIL--EDM------IK-VKGQLFSRI 68 (178)
T ss_pred HHHHHHHHHHHHHhCcHH----HH--hHHHHHHHHHCCCC-HHHHHHHHHHHHHHHH--cCc------ee-ehhhhhHHH
Confidence 778888999888776532 32 45778899998877 3344999999999875 222 21 022334777
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccC--------CCHHHHHHHHHHHHHhccCcch
Q 036338 196 LLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLD--------SDRRLIEASLSCLITISSSKRA 267 (408)
Q Consensus 196 v~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~--------~~~~~~~~A~~aL~~Ls~~~~n 267 (408)
+.+|... +.++|..|...+..+..... ...+.. .++.++..|... .+.+-+..-...|...-..+..
T Consensus 69 l~~l~D~-~~~Ir~~A~~~~~e~~~~~~-~~~i~~---~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~ 143 (178)
T PF12717_consen 69 LKLLVDE-NPEIRSLARSFFSELLKKRN-PNIIYN---NFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQ 143 (178)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHHHHhcc-chHHHH---HHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHH
Confidence 8888887 99999999999999987632 222322 355566655531 2445555666666655554444
Q ss_pred HHHHH
Q 036338 268 KTKLI 272 (408)
Q Consensus 268 ~~~~~ 272 (408)
+..++
T Consensus 144 ~~~l~ 148 (178)
T PF12717_consen 144 KESLV 148 (178)
T ss_pred HHHHH
Confidence 44433
No 212
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.41 E-value=0.047 Score=50.68 Aligned_cols=39 Identities=28% Similarity=0.381 Sum_probs=31.6
Q ss_pred cccccCccccCCCceecCCCCcc-cHhhHHHHHhcCC--CCCCCccccc
Q 036338 13 FFRCPISLDVMKSPVSLCTGVTY-DRASIQRWLDSGN--NTCPATMQVL 58 (408)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~cgh~f-~r~cI~~~~~~~~--~~CP~~~~~l 58 (408)
+..|.||.+.-+|=|.++|||.. |-+| |. ..||+||+.+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~C-------Gkrm~eCPICRqyi 341 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKC-------GKRMNECPICRQYI 341 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhh-------ccccccCchHHHHH
Confidence 78899999999999999999976 4444 32 3699999754
No 213
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.21 E-value=3.2 Score=36.45 Aligned_cols=113 Identities=19% Similarity=0.284 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhhhCh-hhhhhhhhcCChHHHHHHHhhcCc--------chhhHHHHHHHHHH
Q 036338 99 QDEVKDIIRVAISKNEDFSENLTKIVAFAKESD-ENKTFLAKFDGLVVMLVEILSNVN--------DVNMLKQVIRVLDL 169 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~~~~Al~~L~~la~~~~-~~r~~i~~~~G~i~~Lv~lL~s~~--------~~~~~e~A~~~L~~ 169 (408)
......+++.+.+.... .+.+..|+.....++ .--..+.+. ||+..|+.+|..-. +......++.+|..
T Consensus 65 ~~~p~~~i~~L~~~~~~-~~~L~~L~v~Lrt~~~~Wv~~Fl~~-~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clka 142 (187)
T PF06371_consen 65 KSSPEWYIKKLKSRPST-SKILKSLRVSLRTNPISWVQEFLEL-GGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKA 142 (187)
T ss_dssp CHHHHHHHHHHTTT--H-HHHHHHHHHHHHHS-HHHHHHH-HH-HHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHccCcc-HHHHHHHHHHhccCCchHHHHhccC-CCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHH
Confidence 44566788888776432 244555554444433 334456678 99999999996532 22345778888888
Q ss_pred hcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 036338 170 ILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIA 219 (408)
Q Consensus 170 L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La 219 (408)
|.. .... ...++. ..+++..|+..|.+. +..+|..+..+|..+|
T Consensus 143 l~n--~~~G-~~~v~~--~~~~v~~i~~~L~s~-~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 143 LMN--TKYG-LEAVLS--HPDSVNLIALSLDSP-NIKTRKLALEILAALC 186 (187)
T ss_dssp HTS--SHHH-HHHHHC--SSSHHHHHHHT--TT-SHHHHHHHHHHHHHHH
T ss_pred HHc--cHHH-HHHHHc--CcHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence 875 3433 355554 789999999999998 9999999999998876
No 214
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=91.14 E-value=0.083 Score=55.20 Aligned_cols=66 Identities=15% Similarity=0.362 Sum_probs=46.6
Q ss_pred CCcccccCccccCCCceecCCCCcccHhhHHHHHh--cCCCCCCCcccccCCCCCcccHHHHHHHHHH
Q 036338 11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLD--SGNNTCPATMQVLQSKEFVPNRTLQRLIQIW 76 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~--~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~ 76 (408)
..++.||||.....+|+.+.|-|.||+.|+-..|. .+...||.|+...............++++++
T Consensus 19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~ 86 (684)
T KOG4362|consen 19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKES 86 (684)
T ss_pred hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHHh
Confidence 44567999999999999999999999999988543 3445699998544333333333444445533
No 215
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=91.04 E-value=4.9 Score=41.76 Aligned_cols=92 Identities=17% Similarity=0.253 Sum_probs=59.4
Q ss_pred ccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcch---hhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc
Q 036338 190 DCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADS---KVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR 266 (408)
Q Consensus 190 g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~---~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~ 266 (408)
-.+..++.+|++. ++.+|++|+.+...|+..-.+ -+.+.. .|.| |.+-|... .+++.-..+.|++.+-+...
T Consensus 604 ~ivStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~e~~~l~k-lg~i--LyE~lge~-ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 604 MIVSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACGETKELAK-LGNI--LYENLGED-YPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred HHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcchHHHHHH-HhHH--HHHhcCcc-cHHHHHHHHHHHHHHhhhhc
Confidence 4467778899999 999999999999888753221 122222 3433 66667665 88998888888888765433
Q ss_pred hHHHHH-hcCcHHHHHHHhcc
Q 036338 267 AKTKLI-NHKLITELGKLITD 286 (408)
Q Consensus 267 n~~~~~-~~G~i~~Lv~lL~~ 286 (408)
-+..-- -.|++|.|.-.|++
T Consensus 679 ~~~mqpPi~~ilP~ltPILrn 699 (975)
T COG5181 679 FRSMQPPISGILPSLTPILRN 699 (975)
T ss_pred ccccCCchhhccccccHhhhh
Confidence 221111 34566666666664
No 216
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.01 E-value=25 Score=37.78 Aligned_cols=71 Identities=17% Similarity=0.109 Sum_probs=48.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhh--cChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcch
Q 036338 193 NSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAER--DGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRA 267 (408)
Q Consensus 193 ~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~--~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n 267 (408)
-.++++|.++ +.+..+....+|..++.+.|...-++.. ...|..+..+.. +..++..|+.+|..+-.+.+|
T Consensus 255 LrlLriLGq~-d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~---~~~LrvlainiLgkFL~n~d~ 327 (866)
T KOG1062|consen 255 LRLLRILGQN-DADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRS---NSGLRVLAINILGKFLLNRDN 327 (866)
T ss_pred HHHHHHhcCC-CccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccC---CchHHHHHHHHHHHHhcCCcc
Confidence 3456777888 8999999999999998876654444430 113444444443 457999999999987776653
No 217
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=90.78 E-value=11 Score=35.11 Aligned_cols=196 Identities=11% Similarity=0.093 Sum_probs=120.3
Q ss_pred Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhc-------Cc-ch---hhHHHHHHHHHHhcccccchHHH
Q 036338 113 NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSN-------VN-DV---NMLKQVIRVLDLILNKIEDQQHL 180 (408)
Q Consensus 113 ~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s-------~~-~~---~~~e~A~~~L~~L~~~~~~~~~~ 180 (408)
+++ |..|+..|..--+..++..-.+-...|.+..|+.=+-+ +. .. .-+.+|+..|-.++. +.+.
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs--hpet-- 83 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS--HPET-- 83 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH---TTT--
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc--ChHH--
Confidence 345 77888887765544455555555555888777655433 22 11 224677777777776 5544
Q ss_pred HHHHhccCcccHHHHHHHHhcCC----ChHHHHHHHHHHHHhhcCcc--hhhHHhhhcChHHHHHHhcccCCCHHHHHHH
Q 036338 181 MNLILKRDQDCLNSLLLVLKQQE----SVDSRIESLRLLEFIAGDAD--SKVKIAERDGLLAETVKSLSLDSDRRLIEAS 254 (408)
Q Consensus 181 ~~~i~~~~~g~i~~Lv~lL~~~~----~~~~~~~Aa~~L~~La~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A 254 (408)
|..+. ++.+.-.|.-.|+... -...|-.+..+++.|.+.++ .-..+.. .+++|.-++.++.| +.-.+-.|
T Consensus 84 r~~Fl--~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~-tEiiplcLr~me~G-selSKtvA 159 (262)
T PF04078_consen 84 RMPFL--KAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQ-TEIIPLCLRIMEFG-SELSKTVA 159 (262)
T ss_dssp HHHHH--HTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHC-TTHHHHHHHHHHHS--HHHHHHH
T ss_pred HHHHH--HcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHh-hchHHHHHHHHHhc-cHHHHHHH
Confidence 55554 5665545555554320 13467778999999987543 3333334 78999999999998 76677778
Q ss_pred HHHHHHhccCcch-------HHHHH-hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338 255 LSCLITISSSKRA-------KTKLI-NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT 326 (408)
Q Consensus 255 ~~aL~~Ls~~~~n-------~~~~~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~ 326 (408)
.-.+..+-.++.. ..++- =..++..+|.-|.. ..++.+.....+.-..|+.+
T Consensus 160 tfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~--------------------~pS~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 160 TFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVK--------------------QPSPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHH--------------------S--HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHcc--------------------CCChhHHHHHHHHHHHHccC
Confidence 7777777555432 12222 12344555554443 24789999999999999999
Q ss_pred HHHHHHHHhh
Q 036338 327 KQGRMEICQD 336 (408)
Q Consensus 327 ~~~~~~~~~~ 336 (408)
+..|.++...
T Consensus 220 prar~aL~~~ 229 (262)
T PF04078_consen 220 PRAREALRQC 229 (262)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9988888653
No 218
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.73 E-value=0.61 Score=38.10 Aligned_cols=72 Identities=14% Similarity=0.221 Sum_probs=51.8
Q ss_pred ChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 036338 142 GLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIA 219 (408)
Q Consensus 142 G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La 219 (408)
-.+..|+.+|....+...+.-|+.-|+.++. .-++. +.++. +.|+=..+..++.+. +.++|.+|..++..|-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr--~~p~g-r~ii~--~lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVR--HYPNG-RNIIE--KLGAKERVMELMNHE-DPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHH--H-GGG-HHHHH--HHSHHHHHHHHTS-S-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHH--HChhH-HHHHH--hcChHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 3466789999555445555667777777775 33333 67776 789999999999998 9999999999988764
No 219
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=90.66 E-value=3.3 Score=35.71 Aligned_cols=107 Identities=19% Similarity=0.162 Sum_probs=73.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhcC-cchhhHHhhhcChHHHHHHhcc--cCCCHHHHHHHHHHHHHhccCcchHH
Q 036338 193 NSLLLVLKQQESVDSRIESLRLLEFIAGD-ADSKVKIAERDGLLAETVKSLS--LDSDRRLIEASLSCLITISSSKRAKT 269 (408)
Q Consensus 193 ~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~-~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~~~A~~aL~~Ls~~~~n~~ 269 (408)
..+-.++..+ +.+....+..++..|=-. ++....+..+.|+++.++.+.. .. +...+..++.+|..=|.....|.
T Consensus 46 ~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~-~~~~~~~~lell~aAc~d~~~r~ 123 (157)
T PF11701_consen 46 DFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSK-DRKVQKAALELLSAACIDKSCRT 123 (157)
T ss_dssp HHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS--HHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHccHHHHH
Confidence 3344455555 667788888888877543 4666666666899999999998 44 77888888888877777655555
Q ss_pred HHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcc-hHHHHHHHHHH
Q 036338 270 KLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVL-ITEKALRLVEI 322 (408)
Q Consensus 270 ~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~L~~ 322 (408)
.+. ..+++.|-++++.. .+.. ++..|+-+|..
T Consensus 124 ~I~-~~~~~~L~~~~~~~--------------------~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 124 FIS-KNYVSWLKELYKNS--------------------KDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CCH-HHCHHHHHHHTTTC--------------------C-HH-CHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHccc--------------------cchHHHHHHHHHHHhc
Confidence 444 45788888888542 2344 77777777654
No 220
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=90.25 E-value=11 Score=36.36 Aligned_cols=148 Identities=16% Similarity=0.200 Sum_probs=79.4
Q ss_pred HHHHHHHHhcCChh-HHHHHHHHHHHhhh--ChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHH---Hhcccc
Q 036338 102 VKDIIRVAISKNED-FSENLTKIVAFAKE--SDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLD---LILNKI 174 (408)
Q Consensus 102 i~~Lv~~L~s~~~~-~~~Al~~L~~la~~--~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~---~L~~~~ 174 (408)
+..+.+.++.+..+ +.-|++.+.-++-. .......+.+ ...|.|...+.... ..+....++.+|. .++.
T Consensus 88 ~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~--~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~-- 163 (309)
T PF05004_consen 88 LDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFE--ELKPVLKRILTDSSASPKARAACLEALAICTFVGG-- 163 (309)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHH--HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhc--
Confidence 44566667766654 66677776666543 2233445554 46888999988766 3433233343443 3332
Q ss_pred cchHHHHHHHhccCcccHH--HHHHHHhcCCC---------hHHHHHHHHHHHHhhcC-cchh-hHHhhhcChHHHHHHh
Q 036338 175 EDQQHLMNLILKRDQDCLN--SLLLVLKQQES---------VDSRIESLRLLEFIAGD-ADSK-VKIAERDGLLAETVKS 241 (408)
Q Consensus 175 ~~~~~~~~~i~~~~~g~i~--~Lv~lL~~~~~---------~~~~~~Aa~~L~~La~~-~~~~-~~i~~~~g~i~~Lv~l 241 (408)
.+.+.+...+ ..+. .....++.+++ ..+...|...-..|... +..+ .... ...++.|+.+
T Consensus 164 ~d~~~~~~~~-----~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~--~~~~~~l~~l 236 (309)
T PF05004_consen 164 SDEEETEELM-----ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLL--EEALPALSEL 236 (309)
T ss_pred CChhHHHHHH-----HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHH
Confidence 2322212111 1222 11122222212 34555555555544433 3321 2222 3579999999
Q ss_pred cccCCCHHHHHHHHHHHHHh
Q 036338 242 LSLDSDRRLIEASLSCLITI 261 (408)
Q Consensus 242 L~~~~~~~~~~~A~~aL~~L 261 (408)
|.+. +.++|.+|..+|.-|
T Consensus 237 L~s~-d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 237 LDSD-DVDVRIAAGEAIALL 255 (309)
T ss_pred hcCC-CHHHHHHHHHHHHHH
Confidence 9987 999999998887655
No 221
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=90.11 E-value=2.2 Score=37.12 Aligned_cols=111 Identities=18% Similarity=0.191 Sum_probs=75.8
Q ss_pred ccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHH-hhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc----C
Q 036338 190 DCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKI-AERDGLLAETVKSLSLDSDRRLIEASLSCLITISS----S 264 (408)
Q Consensus 190 g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i-~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~----~ 264 (408)
..+..+..+|++. +.+.|..++.++..++...+. +.+ ....-.+..|+++|+...++..++.+..+|..|.. .
T Consensus 25 ~l~~ri~~LL~s~-~~~~rw~G~~Ll~~~~~~~~~-e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 25 KLVTRINSLLQSK-SAYSRWAGLCLLKVTVEQCSW-EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3456678888888 899999999999888866432 333 23234789999999987677888999888887754 2
Q ss_pred cchHHHHHh---cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 265 KRAKTKLIN---HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 265 ~~n~~~~~~---~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
++-..++.. .+.|+.++.+++ +....+.++.+|..|-.
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~-----------------------~~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQ-----------------------DSSCPETALDALATLLP 143 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHh-----------------------ccccHHHHHHHHHHHHH
Confidence 333333332 355566666664 24667777777777743
No 222
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=89.92 E-value=0.29 Score=40.30 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=40.3
Q ss_pred CcccccCccccCCCceec----CCCCcccHhhHHHHHhc--CCCCCCCcccccCC
Q 036338 12 SFFRCPISLDVMKSPVSL----CTGVTYDRASIQRWLDS--GNNTCPATMQVLQS 60 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~----~cgh~f~r~cI~~~~~~--~~~~CP~~~~~l~~ 60 (408)
.-+-|-||++.-.|.--+ .||++.|-.|--..|+. -.++||.|+..+..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 457799999999998776 39999999999997765 35789999876644
No 223
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=89.90 E-value=0.2 Score=39.19 Aligned_cols=27 Identities=26% Similarity=0.600 Sum_probs=23.5
Q ss_pred CCCCcccHhhHHHHHhcCCCCCCCcccc
Q 036338 30 CTGVTYDRASIQRWLDSGNNTCPATMQV 57 (408)
Q Consensus 30 ~cgh~f~r~cI~~~~~~~~~~CP~~~~~ 57 (408)
.|.|.|--.||.+|+++ ...||.+.+.
T Consensus 80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT-RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence 49999999999999996 5579999764
No 224
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=89.58 E-value=0.2 Score=47.03 Aligned_cols=43 Identities=23% Similarity=0.388 Sum_probs=36.4
Q ss_pred cccccCccccCCC----ceecCCCCcccHhhHHHHHhcCCCCCCCccc
Q 036338 13 FFRCPISLDVMKS----PVSLCTGVTYDRASIQRWLDSGNNTCPATMQ 56 (408)
Q Consensus 13 ~~~Cpi~~~~~~d----Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~ 56 (408)
++-||||.+.+.+ |..++|||+--.+|.++....+ .+||.|.+
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~ 204 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK 204 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence 4569999988765 7778999999989998888877 89999976
No 225
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.52 E-value=13 Score=39.62 Aligned_cols=177 Identities=16% Similarity=0.215 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHH-HHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIV-AFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED 176 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~-~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~ 176 (408)
.+.+..+-+.+.+...+ |..|++.+- .+.-+ .+ ..+..|-++......+ .....-.-.-|.|-+. ..
T Consensus 12 k~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G-~D-------vSslF~dvvk~~~T~d-lelKKlvyLYl~nYa~--~~ 80 (734)
T KOG1061|consen 12 KGEIPELKSQLNSQSKEKRKDAVKKVIAYMTVG-KD-------VSSLFPDVVKCMQTRD-LELKKLVYLYLMNYAK--GK 80 (734)
T ss_pred hhhchHHHHHhhhhhhhhHHHHHHHHHhcCccC-cc-------hHhhhHHHHhhcccCC-chHHHHHHHHHHHhhc--cC
Confidence 44566666666444445 666766543 33322 11 1245666677666555 2221322233334443 22
Q ss_pred hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338 177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS 256 (408)
Q Consensus 177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~ 256 (408)
.. . .-+++..+++=-.+. ++..|..|.+.+..+-.. .+. .-.+.||.+.++++ ++-+++.|+-
T Consensus 81 P~--~------a~~avnt~~kD~~d~-np~iR~lAlrtm~~l~v~-----~i~--ey~~~Pl~~~l~d~-~~yvRktaa~ 143 (734)
T KOG1061|consen 81 PD--L------AILAVNTFLKDCEDP-NPLIRALALRTMGCLRVD-----KIT--EYLCDPLLKCLKDD-DPYVRKTAAV 143 (734)
T ss_pred ch--H------HHhhhhhhhccCCCC-CHHHHHHHhhceeeEeeh-----HHH--HHHHHHHHHhccCC-ChhHHHHHHH
Confidence 22 1 124455555544455 777777766665544322 233 24689999999997 8888888887
Q ss_pred HHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338 257 CLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT 326 (408)
Q Consensus 257 aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~ 326 (408)
...++=. .+.......|.++.|-+++.+. ++.++..|+++|..+...
T Consensus 144 ~vakl~~--~~~~~~~~~gl~~~L~~ll~D~---------------------~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 144 CVAKLFD--IDPDLVEDSGLVDALKDLLSDS---------------------NPMVVANALAALSEIHES 190 (734)
T ss_pred HHHHhhc--CChhhccccchhHHHHHHhcCC---------------------CchHHHHHHHHHHHHHHh
Confidence 7777644 3455566899999999999853 889999999999999753
No 226
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=89.47 E-value=0.09 Score=58.10 Aligned_cols=46 Identities=22% Similarity=0.409 Sum_probs=38.3
Q ss_pred CCCcccccCccccCCC-ceecCCCCcccHhhHHHHHhcCCCCCCCccc
Q 036338 10 VPSFFRCPISLDVMKS-PVSLCTGVTYDRASIQRWLDSGNNTCPATMQ 56 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~d-Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~ 56 (408)
+-..+.|+||++++++ =.+..|||.||..|++-|... +..||.|+.
T Consensus 1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ks 1196 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICKS 1196 (1394)
T ss_pred hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchhh
Confidence 3456789999999994 556789999999999999985 456999973
No 227
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=89.17 E-value=2.6 Score=37.05 Aligned_cols=93 Identities=19% Similarity=0.145 Sum_probs=70.7
Q ss_pred ChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHH
Q 036338 204 SVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKL 283 (408)
Q Consensus 204 ~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~l 283 (408)
++.+|.++..+++.|+.... .+.+ ..++.+...|+++ ++.+|+.|+.+|..|...+--+.+ ...+..++.+
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~---~~ve--~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYP---NLVE--PYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCc---HHHH--hHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHH
Confidence 46789999999999986553 2333 4689999999997 999999999999999876432221 1223667777
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338 284 ITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT 326 (408)
Q Consensus 284 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~ 326 (408)
+.+ .++.++..|...+..+...
T Consensus 72 l~D---------------------~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVD---------------------ENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcC---------------------CCHHHHHHHHHHHHHHHHh
Confidence 764 3889999999999998764
No 228
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=89.02 E-value=26 Score=34.89 Aligned_cols=126 Identities=11% Similarity=0.146 Sum_probs=89.3
Q ss_pred ChHHHHHHHhhcCc--chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHh-cC--CChHHHHHHHHHHH
Q 036338 142 GLVVMLVEILSNVN--DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLK-QQ--ESVDSRIESLRLLE 216 (408)
Q Consensus 142 G~i~~Lv~lL~s~~--~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~-~~--~~~~~~~~Aa~~L~ 216 (408)
-....|..+++... ...+...|+.++..+.. .|+. .-..+. ++|.++.+++.+. .+ .+.++-..--.+|.
T Consensus 106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~--nePT-~~~~l~--e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIH--NEPT-SFSILQ--EAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred hHHHHHHHHHhCccccchHHHHHHHHHHHHHHh--cCCc-hhHHHH--HcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 55666777777665 56666888888888775 3443 356676 9999999999998 43 25677777778889
Q ss_pred HhhcCcchhhHHhhhcChHHHHHHhcccCCCH------HHHHHHHHHHHHhccCcc-hHHHHHh
Q 036338 217 FIAGDADSKVKIAERDGLLAETVKSLSLDSDR------RLIEASLSCLITISSSKR-AKTKLIN 273 (408)
Q Consensus 217 ~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~------~~~~~A~~aL~~Ls~~~~-n~~~~~~ 273 (408)
.||.+.+..+.+.+ .+.++.+++++.+.... +....--.++-.|.++.. -|..+++
T Consensus 181 AicLN~~Gl~~~~~-~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 181 AICLNNRGLEKVKS-SNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred HHhcCHHHHHHHHh-cChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999999988 79999999999864221 223333445667777655 4444443
No 229
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.68 E-value=0.23 Score=52.76 Aligned_cols=40 Identities=15% Similarity=0.463 Sum_probs=34.7
Q ss_pred cccccCccccCCCceec-CCCCcccHhhHHHHHhcCCCCCCCccc
Q 036338 13 FFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQ 56 (408)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~ 56 (408)
.-.|..|.-.+.=|++- .|||.|-+.|.+ ++...||.|.-
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~ 880 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP 880 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence 35899999999999985 799999999988 56678999974
No 230
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.58 E-value=0.32 Score=47.08 Aligned_cols=51 Identities=29% Similarity=0.605 Sum_probs=40.5
Q ss_pred cccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCc
Q 036338 13 FFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFV 64 (408)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~ 64 (408)
...|.++...|.|||-...|-.|+-..|-.|++. ..+=|.+++++...+|+
T Consensus 40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLI 90 (518)
T KOG0883|consen 40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLI 90 (518)
T ss_pred hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCccccccce
Confidence 3579999999999999999999999999999974 33456666665555544
No 231
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.51 E-value=37 Score=37.47 Aligned_cols=141 Identities=12% Similarity=0.123 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhc------Cc-chhhHHHHHHHHHHhcccccchHHHHHHHhccC
Q 036338 116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSN------VN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRD 188 (408)
Q Consensus 116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s------~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~ 188 (408)
..+|+..+..+++. +.++.+- |.++.+++.|.+ +. +.+-.+-|+.++++|+.-+......+..+ +
T Consensus 389 ~~Aa~~~l~~~~~K--R~ke~l~---k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m---E 460 (1010)
T KOG1991|consen 389 DTAALDFLTTLVSK--RGKETLP---KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM---E 460 (1010)
T ss_pred cHHHHHHHHHHHHh--cchhhhh---hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH---H
Confidence 34566666666543 2222222 788899999973 22 45556778888887763111111113333 2
Q ss_pred cccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcch
Q 036338 189 QDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRA 267 (408)
Q Consensus 189 ~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n 267 (408)
.-.++.+.-.+++. -.-.|.+|++++..++..+ ....... .+++...+.|.++.+..++-.|+-||..+-++.+.
T Consensus 461 ~flv~hVfP~f~s~-~g~Lrarac~vl~~~~~~df~d~~~l~---~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~ 536 (1010)
T KOG1991|consen 461 YFLVNHVFPEFQSP-YGYLRARACWVLSQFSSIDFKDPNNLS---EALELTHNCLLNDNELPVRVEAALALQSFISNQEQ 536 (1010)
T ss_pred HHHHHHhhHhhcCc-hhHHHHHHHHHHHHHHhccCCChHHHH---HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchh
Confidence 33355555566776 7789999999999999543 2333332 36788888888545788999999999998877654
Q ss_pred H
Q 036338 268 K 268 (408)
Q Consensus 268 ~ 268 (408)
.
T Consensus 537 ~ 537 (1010)
T KOG1991|consen 537 A 537 (1010)
T ss_pred h
Confidence 4
No 232
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=88.39 E-value=1.9 Score=37.95 Aligned_cols=74 Identities=20% Similarity=0.203 Sum_probs=60.5
Q ss_pred CcccHHHHHHHHhcC--------CChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHH
Q 036338 188 DQDCLNSLLLVLKQQ--------ESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLI 259 (408)
Q Consensus 188 ~~g~i~~Lv~lL~~~--------~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~ 259 (408)
+.||+..|+.+|..- .+.+....+...|..|..+..+...+....+++..|+..|.+. +..++..++..|.
T Consensus 105 ~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~-~~~~r~~~leiL~ 183 (187)
T PF06371_consen 105 ELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSP-NIKTRKLALEILA 183 (187)
T ss_dssp HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TT-SHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 679999999988631 1345677789999999988888888887799999999999986 8999999999998
Q ss_pred Hhc
Q 036338 260 TIS 262 (408)
Q Consensus 260 ~Ls 262 (408)
.+|
T Consensus 184 ~lc 186 (187)
T PF06371_consen 184 ALC 186 (187)
T ss_dssp HHH
T ss_pred HHH
Confidence 887
No 233
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=88.31 E-value=9.4 Score=35.75 Aligned_cols=168 Identities=13% Similarity=0.167 Sum_probs=101.3
Q ss_pred HHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcC---CChHHHHHHHHHHHHhh
Q 036338 144 VVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQ---ESVDSRIESLRLLEFIA 219 (408)
Q Consensus 144 i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~---~~~~~~~~Aa~~L~~La 219 (408)
+..+..++.+.. +.. --++.+++.+.. +... -..+.....+....+..++..+ .+...+.-+.+++.|+-
T Consensus 65 ~~~~~~~~~~Wp~~~~--fP~lDLlRl~~l--~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF 138 (268)
T PF08324_consen 65 LILLLKILLSWPPESR--FPALDLLRLAAL--HPPA--SDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLF 138 (268)
T ss_dssp HHHHHHHHCCS-CCC---HHHHHHHHHHCC--CHCH--HHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCccc--hhHHhHHHHHHh--CccH--HHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhh
Confidence 344555555544 333 667777777765 3332 2333311223345555555443 25667788999999999
Q ss_pred cCcchhhHHhhhcC-hHHHHHHhcccCC---CHHHHHHHHHHHHHhccCcc-hH-HHHHhcCcHHHHHHHhccCCCCCCC
Q 036338 220 GDADSKVKIAERDG-LLAETVKSLSLDS---DRRLIEASLSCLITISSSKR-AK-TKLINHKLITELGKLITDGHNGNGS 293 (408)
Q Consensus 220 ~~~~~~~~i~~~~g-~i~~Lv~lL~~~~---~~~~~~~A~~aL~~Ls~~~~-n~-~~~~~~G~i~~Lv~lL~~~~~~~~~ 293 (408)
.+...+..+....+ .+...+..+.... +..++.+++..++|++..-. ++ ..-.....+..+++.+...
T Consensus 139 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~------ 212 (268)
T PF08324_consen 139 SHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSRE------ 212 (268)
T ss_dssp TSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCC------
T ss_pred CCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccc------
Confidence 99888888876444 3444555444432 56789999999999976321 11 1111222445566644322
Q ss_pred CCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhh
Q 036338 294 GNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQD 336 (408)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 336 (408)
..++++.-.++.+|.+|...+.........
T Consensus 213 -------------~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~ 242 (268)
T PF08324_consen 213 -------------ESDEEALYRLLVALGTLLSSSDSAKQLAKS 242 (268)
T ss_dssp -------------HTSHHHHHHHHHHHHHHHCCSHHHHHHCCC
T ss_pred -------------cCCHHHHHHHHHHHHHHhccChhHHHHHHH
Confidence 348899999999999999776666666553
No 234
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=88.21 E-value=44 Score=36.60 Aligned_cols=126 Identities=18% Similarity=0.273 Sum_probs=78.9
Q ss_pred hhhcCChHHHHHHHhhcCc----chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHh----cCCC----
Q 036338 137 LAKFDGLVVMLVEILSNVN----DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLK----QQES---- 204 (408)
Q Consensus 137 i~~~~G~i~~Lv~lL~s~~----~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~----~~~~---- 204 (408)
+.+. |++..|+.+|.+-. +.......+.+|..++. -..+ |+.+. +.|+++.|++.|. .+ .
T Consensus 113 ~~~~-gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K--v~~N--R~~Ll--~~~al~~LL~~L~~~l~~~-~~~~~ 184 (802)
T PF13764_consen 113 LAEC-GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK--VKVN--RRALL--ELNALNRLLSVLNRALQAN-QNSSQ 184 (802)
T ss_pred hhcC-CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh--hHHH--HHHHH--HcCCHHHHHHHHHHHHhCc-ccccc
Confidence 4445 99999999998744 22334556667776765 4444 56665 7999999999885 22 3
Q ss_pred hHHHHHHHHHHHHhhcCcch---hhHHh--h-------hcChHHHHHHhcccC---CCHHHHHHHHHHHHHhccCcchHH
Q 036338 205 VDSRIESLRLLEFIAGDADS---KVKIA--E-------RDGLLAETVKSLSLD---SDRRLIEASLSCLITISSSKRAKT 269 (408)
Q Consensus 205 ~~~~~~Aa~~L~~La~~~~~---~~~i~--~-------~~g~i~~Lv~lL~~~---~~~~~~~~A~~aL~~Ls~~~~n~~ 269 (408)
.+.-+....++..|...... ..... . ...-+..|++.+.+. .++.+.+..++.|-+|+.+.....
T Consensus 185 ~~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m 264 (802)
T PF13764_consen 185 AEIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKM 264 (802)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHH
Confidence 45556666666666433211 11000 0 011366677777643 367889999999999998766544
Q ss_pred H
Q 036338 270 K 270 (408)
Q Consensus 270 ~ 270 (408)
.
T Consensus 265 ~ 265 (802)
T PF13764_consen 265 D 265 (802)
T ss_pred H
Confidence 3
No 235
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=87.74 E-value=18 Score=34.77 Aligned_cols=131 Identities=12% Similarity=0.042 Sum_probs=90.6
Q ss_pred HHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCC-CHHHHHHHHHHHHHhccCcchHHHHH-hc
Q 036338 197 LVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDS-DRRLIEASLSCLITISSSKRAKTKLI-NH 274 (408)
Q Consensus 197 ~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~~A~~aL~~Ls~~~~n~~~~~-~~ 274 (408)
+++++- +.-+|--|...|.++....+.|..+-...-.-..++.++++.. +.+.+=.++-.+|-|..++.-.+.+- -.
T Consensus 156 kl~Q~i-~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~ 234 (432)
T COG5231 156 KLSQLI-DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMD 234 (432)
T ss_pred HHHHHH-HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 444444 5567888999999999998888777653456678888888642 46888999999999998877653333 25
Q ss_pred CcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHH-HHHHHHhhcCchHHHHHHHHH
Q 036338 275 KLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQ-GRMEICQDAALLNGVVQKMLK 349 (408)
Q Consensus 275 G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~-~~~~~~~~~g~i~~lv~~l~~ 349 (408)
..|.-|+++..+. ....+-..+++++.|+++ .+. --..+... |-+..-|+.|..
T Consensus 235 dli~dli~iVk~~--------------------~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll-~~~~k~vq~L~e 290 (432)
T COG5231 235 DLINDLIAIVKER--------------------AKEKVLRLCCGIVANVLDKSPKGYIFSPLLL-NDISKCVQVLLE 290 (432)
T ss_pred HHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHhcccccchhhhhHhh-cchHHHHHHHHh
Confidence 6778888888762 356778889999999987 322 22223332 434445555544
No 236
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=87.70 E-value=5.9 Score=37.03 Aligned_cols=95 Identities=14% Similarity=0.206 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHH
Q 036338 116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSL 195 (408)
Q Consensus 116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~L 195 (408)
...|+..|.-++--++..|..+.+. ..+..|+++|.......++-.++.+|..+.. ..... .+.+. +.+++..+
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~-~~m~lll~LL~~~~~~~i~~a~L~tLv~iLl--d~p~N-~r~FE--~~~Gl~~v 181 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHRE-QNMELLLDLLSPSNPPAIQSACLDTLVCILL--DSPEN-QRDFE--ELNGLSTV 181 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhh-hhHHHHHHHhccCCCchHHHHHHHHHHHHHH--cChHH-HHHHH--HhCCHHHH
Confidence 4557888888888889999999999 9999999999554434445778888887765 33333 34554 78999999
Q ss_pred HHHHhcC-CChHHHHHHHHHHH
Q 036338 196 LLVLKQQ-ESVDSRIESLRLLE 216 (408)
Q Consensus 196 v~lL~~~-~~~~~~~~Aa~~L~ 216 (408)
+.++++. .+.++|......|.
T Consensus 182 ~~llk~~~~~~~~r~K~~EFL~ 203 (257)
T PF08045_consen 182 CSLLKSKSTDRELRLKCIEFLY 203 (257)
T ss_pred HHHHccccccHHHhHHHHHHHH
Confidence 9999864 14566666555555
No 237
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=87.67 E-value=18 Score=36.43 Aligned_cols=113 Identities=23% Similarity=0.276 Sum_probs=78.0
Q ss_pred hHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH------------HHHHHhccCcccHHHHHHHHhcCCChHHHHH
Q 036338 143 LVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH------------LMNLILKRDQDCLNSLLLVLKQQESVDSRIE 210 (408)
Q Consensus 143 ~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~------------~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~ 210 (408)
.+..|+.+|.++. .-..|+..+.-|.. +.++. +|+.+ -.-.+|.|++..+.. +.+.|.+
T Consensus 272 ~~~~L~~lL~~~~---~g~~aA~~f~il~~--d~~~~l~~~~~a~vklLykQR~---F~~~~p~L~~~~~~~-~~~~k~~ 342 (415)
T PF12460_consen 272 LLDKLLELLSSPE---LGQQAAKAFGILLS--DSDDVLNKENHANVKLLYKQRF---FTQVLPKLLEGFKEA-DDEIKSN 342 (415)
T ss_pred HHHHHHHHhCChh---hHHHHHHHHhhHhc--CcHHhcCccccchhhhHHhHHH---HHHHHHHHHHHHhhc-ChhhHHH
Confidence 3555777777643 23556666666654 21221 12222 235678888888877 7778888
Q ss_pred HHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCc
Q 036338 211 SLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSK 265 (408)
Q Consensus 211 Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~ 265 (408)
-..+|..+..+-.....+.+-...+|.|++-|..+ +.+++..++.+|..+....
T Consensus 343 yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 343 YLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcC
Confidence 88899988876555555555456889999999876 8889999999999988765
No 238
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.67 E-value=0.42 Score=46.17 Aligned_cols=49 Identities=22% Similarity=0.349 Sum_probs=41.8
Q ss_pred CcccccCccccCCC---ceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 12 SFFRCPISLDVMKS---PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 12 ~~~~Cpi~~~~~~d---Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
..+.|.|+++.|.| |++.|.||+|-...|+.|-..++-.||.+++.+..
T Consensus 329 S~Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~ 380 (389)
T KOG0396|consen 329 SRLVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRY 380 (389)
T ss_pred hHHHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccH
Confidence 34789999999988 99999999999999999976555789999887643
No 239
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.56 E-value=6.2 Score=41.37 Aligned_cols=87 Identities=15% Similarity=0.093 Sum_probs=62.7
Q ss_pred CcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcch
Q 036338 188 DQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRA 267 (408)
Q Consensus 188 ~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n 267 (408)
.+|+-..+|.-|... =.++|..|+..+..|+.+.. .+.. ..+..||+++.++ ...++..|..+|..++.+-.
T Consensus 371 ~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP---~FA~--~aldfLvDMfNDE-~~~VRL~ai~aL~~Is~~l~- 442 (823)
T KOG2259|consen 371 PSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSP---GFAV--RALDFLVDMFNDE-IEVVRLKAIFALTMISVHLA- 442 (823)
T ss_pred cccccceeeeechHH-HHHHHHHHHHHHHHHHcCCC---CcHH--HHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHhe-
Confidence 456666777777665 67899999999999987542 2332 3589999999987 77899999999999987622
Q ss_pred HHHHHhcCcHHHHHHHhcc
Q 036338 268 KTKLINHKLITELGKLITD 286 (408)
Q Consensus 268 ~~~~~~~G~i~~Lv~lL~~ 286 (408)
++..-++.+++.|.+
T Consensus 443 ----i~eeql~~il~~L~D 457 (823)
T KOG2259|consen 443 ----IREEQLRQILESLED 457 (823)
T ss_pred ----ecHHHHHHHHHHHHh
Confidence 233445555555553
No 240
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.56 E-value=0.58 Score=45.81 Aligned_cols=45 Identities=18% Similarity=0.385 Sum_probs=33.9
Q ss_pred CcccccCccccCCCc---eecCCCCcccHhhHHHHHhc----CC---CCCCCccc
Q 036338 12 SFFRCPISLDVMKSP---VSLCTGVTYDRASIQRWLDS----GN---NTCPATMQ 56 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dP---v~~~cgh~f~r~cI~~~~~~----~~---~~CP~~~~ 56 (408)
.-|-|.||.+...-. +.++|+|.||++|+..|+.. |. -.||.++-
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C 237 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC 237 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence 457899999877653 35699999999999999753 32 35887654
No 241
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=87.53 E-value=0.44 Score=50.16 Aligned_cols=52 Identities=6% Similarity=-0.113 Sum_probs=40.1
Q ss_pred CcCCCCCCcccccCccccCCCce----ecC---CCCcccHhhHHHHHhc-----CCCCCCCccc
Q 036338 5 DLYITVPSFFRCPISLDVMKSPV----SLC---TGVTYDRASIQRWLDS-----GNNTCPATMQ 56 (408)
Q Consensus 5 ~~~~~~~~~~~Cpi~~~~~~dPv----~~~---cgh~f~r~cI~~~~~~-----~~~~CP~~~~ 56 (408)
+...+.++.-+|++|..-+.+|| +.+ |+|.||-.||..|.+. .+..|++|..
T Consensus 88 E~DeK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~ 151 (1134)
T KOG0825|consen 88 EVDEKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEE 151 (1134)
T ss_pred ccCcccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHH
Confidence 34556677889999999999966 334 9999999999999764 2345788754
No 242
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=87.08 E-value=0.21 Score=45.54 Aligned_cols=49 Identities=10% Similarity=0.193 Sum_probs=31.6
Q ss_pred CCcee-cCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHH
Q 036338 24 KSPVS-LCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWS 77 (408)
Q Consensus 24 ~dPv~-~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~ 77 (408)
.||.- +.|+|.||..|...... ..||.|++++.-..+.+| |-.-|..++
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~~~---~~C~lCkk~ir~i~l~~s--lp~~ik~~F 64 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKASSP---DVCPLCKKSIRIIQLNRS--LPTDIKSYF 64 (233)
T ss_pred CCceeeeechhhhhhhhcccCCc---cccccccceeeeeecccc--cchhHHHHc
Confidence 45654 47999999999543222 389999998654444444 444455555
No 243
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.03 E-value=27 Score=37.65 Aligned_cols=161 Identities=16% Similarity=0.213 Sum_probs=99.0
Q ss_pred HHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhc
Q 036338 108 VAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILK 186 (408)
Q Consensus 108 ~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~ 186 (408)
.|+|.++. -...++....+|..+ ++ . .++.+|+++|.+....| .-.+..+..++. .
T Consensus 295 Ll~S~n~sVVmA~aql~y~lAP~~-~~------~-~i~kaLvrLLrs~~~vq--yvvL~nIa~~s~--~----------- 351 (968)
T KOG1060|consen 295 LLQSRNPSVVMAVAQLFYHLAPKN-QV------T-KIAKALVRLLRSNREVQ--YVVLQNIATISI--K----------- 351 (968)
T ss_pred HHhcCCcHHHHHHHhHHHhhCCHH-HH------H-HHHHHHHHHHhcCCcch--hhhHHHHHHHHh--c-----------
Confidence 46677766 677777888887653 11 1 56778999999877444 444444444432 1
Q ss_pred cCcccHHHHHHH--HhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccC
Q 036338 187 RDQDCLNSLLLV--LKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSS 264 (408)
Q Consensus 187 ~~~g~i~~Lv~l--L~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~ 264 (408)
..+.+.+-++- +.+.....++..-..+|.+|+...... -+++.|-..+++. +.+...+|..||...+..
T Consensus 352 -~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~-------~ILrE~q~YI~s~-d~~faa~aV~AiGrCA~~ 422 (968)
T KOG1060|consen 352 -RPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNIS-------EILRELQTYIKSS-DRSFAAAAVKAIGRCASR 422 (968)
T ss_pred -chhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHH-------HHHHHHHHHHhcC-chhHHHHHHHHHHHHHHh
Confidence 11222222111 122214556666777888887543322 2345567777775 556777788888776653
Q ss_pred cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 265 KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 265 ~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
- .-+..-.+.-||.||+++ +..++..|+.++..|..
T Consensus 423 ~----~sv~~tCL~gLv~Llssh---------------------de~Vv~eaV~vIk~Llq 458 (968)
T KOG1060|consen 423 I----GSVTDTCLNGLVQLLSSH---------------------DELVVAEAVVVIKRLLQ 458 (968)
T ss_pred h----CchhhHHHHHHHHHHhcc---------------------cchhHHHHHHHHHHHHh
Confidence 2 123445778899999875 77888889999988875
No 244
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.99 E-value=46 Score=35.49 Aligned_cols=101 Identities=14% Similarity=0.123 Sum_probs=59.9
Q ss_pred HHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHH
Q 036338 104 DIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLM 181 (408)
Q Consensus 104 ~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~ 181 (408)
.+-..|.+.++- ..-|+..+.++.. .++++.+..- |+ ++|-|++ ..-+...|+-+|..|-+ ..+
T Consensus 115 ~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~~D---I~---KlLvS~~~~~~vkqkaALclL~L~r--~sp---- 180 (938)
T KOG1077|consen 115 SIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFADD---IP---KLLVSGSSMDYVKQKAALCLLRLFR--KSP---- 180 (938)
T ss_pred HHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhhhh---hH---HHHhCCcchHHHHHHHHHHHHHHHh--cCc----
Confidence 334445555554 6667888777744 3556655532 33 6777766 22222444444444544 122
Q ss_pred HHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC
Q 036338 182 NLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD 221 (408)
Q Consensus 182 ~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~ 221 (408)
.++. ..++..+++.+|... +..+-..+..+|..|+..
T Consensus 181 Dl~~--~~~W~~riv~LL~D~-~~gv~ta~~sLi~~lvk~ 217 (938)
T KOG1077|consen 181 DLVN--PGEWAQRIVHLLDDQ-HMGVVTAATSLIEALVKK 217 (938)
T ss_pred cccC--hhhHHHHHHHHhCcc-ccceeeehHHHHHHHHHc
Confidence 2342 447788889988877 666677778888877764
No 245
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=86.71 E-value=0.28 Score=39.16 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=28.2
Q ss_pred CCCCCcccccCccccCCCceec--CCCCcccHhhHH
Q 036338 8 ITVPSFFRCPISLDVMKSPVSL--CTGVTYDRASIQ 41 (408)
Q Consensus 8 ~~~~~~~~Cpi~~~~~~dPv~~--~cgh~f~r~cI~ 41 (408)
+.+.++-.|++|++.+.+++.. ||||.|-..|+.
T Consensus 73 v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 73 VVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 4566777899999999987754 999999999874
No 246
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.60 E-value=0.4 Score=46.13 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=36.5
Q ss_pred ccccCccccCCCceecCCCCc-ccHhhHHHHHhcCCCCCCCcccccC
Q 036338 14 FRCPISLDVMKSPVSLCTGVT-YDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~cgh~-f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
--|=||+.--+|-+++||-|. .|..|-+..- -....||+||+++.
T Consensus 291 keCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 291 KECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPIE 336 (349)
T ss_pred CeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccchH
Confidence 469999999999999999996 6889977653 12446999999864
No 247
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=86.45 E-value=0.22 Score=44.95 Aligned_cols=47 Identities=19% Similarity=0.296 Sum_probs=35.9
Q ss_pred CcccccCccc-cCCCcee----cC-CCCcccHhhHHHHHhcCCCCCC--Cccccc
Q 036338 12 SFFRCPISLD-VMKSPVS----LC-TGVTYDRASIQRWLDSGNNTCP--ATMQVL 58 (408)
Q Consensus 12 ~~~~Cpi~~~-~~~dPv~----~~-cgh~f~r~cI~~~~~~~~~~CP--~~~~~l 58 (408)
.+-.||+|+- .+-+|-+ .| |=|..|-+|..+.|..|...|| -|++.+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence 3457999983 4445532 24 9999999999999999999999 676543
No 248
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=86.40 E-value=0.69 Score=44.23 Aligned_cols=59 Identities=14% Similarity=0.358 Sum_probs=43.0
Q ss_pred CCcccccCccccCCCceec-CCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHH
Q 036338 11 PSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIW 76 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~ 76 (408)
.+-+-||+|.+.|.-|+.= .-||.-|-+|=.+ -...||.|+.++.+ +.++.+.+.++..
T Consensus 46 ~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g~---~R~~amEkV~e~~ 105 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIGN---IRCRAMEKVAEAV 105 (299)
T ss_pred hhhccCchhhccCcccceecCCCcEehhhhhhh----hcccCCcccccccc---HHHHHHHHHHHhc
Confidence 4457899999999999764 4799999999432 23469999988752 2456666666543
No 249
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=86.35 E-value=6.4 Score=39.81 Aligned_cols=156 Identities=8% Similarity=0.039 Sum_probs=88.3
Q ss_pred ChHHHHHHHhhcCc-chhhHHHHHHHHHHhccc----ccchHHHHHHHhccCcccHHHHHHHHh--cCCChHHHHHHHHH
Q 036338 142 GLVVMLVEILSNVN-DVNMLKQVIRVLDLILNK----IEDQQHLMNLILKRDQDCLNSLLLVLK--QQESVDSRIESLRL 214 (408)
Q Consensus 142 G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~----~~~~~~~~~~i~~~~~g~i~~Lv~lL~--~~~~~~~~~~Aa~~ 214 (408)
.+...+...|.+.. ..+ +.+.+++.|++.- +.........+. .-.+..+++.-. +..+..++.+|.++
T Consensus 433 ~aa~~il~sl~d~~ln~r--~KaawtlgnITdAL~~~~Ps~~s~~eR~s---g~ll~~~~~~A~~~~Ad~dkV~~navra 507 (728)
T KOG4535|consen 433 DAANAILMSLEDKSLNVR--AKAAWSLGNITDALIVNMPTPDSFQERFS---GLLLLKMLRSAIEASADKDKVKSNAVRA 507 (728)
T ss_pred HHHHHHHHHhhhHhHhHH--HHHHHHhhhhHHHHHcCCCCchHHHHHHH---HHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence 34445555555544 444 8888888887521 011111112221 111222222221 11156788999999
Q ss_pred HHHhhcCcc------hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHH-HHH-hcCcHHHHHHHhcc
Q 036338 215 LEFIAGDAD------SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKT-KLI-NHKLITELGKLITD 286 (408)
Q Consensus 215 L~~La~~~~------~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~-~~~-~~G~i~~Lv~lL~~ 286 (408)
|+|+...-+ +++.+ .|.+..+....-.+....++-+|+.|+.||-+++.-.- .+- ..-+++.|..|+.+
T Consensus 508 LgnllQvlq~i~~~~~~e~~---~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~ 584 (728)
T KOG4535|consen 508 LGNLLQFLQPIEKPTFAEII---EESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTS 584 (728)
T ss_pred HhhHHHHHHHhhhccHHHHH---HHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHH
Confidence 999975322 22222 23444444444333367899999999999988765311 111 23467889999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 287 GHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
. .+-+++-.|+++|..-..
T Consensus 585 ~--------------------~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 585 C--------------------KNFKVRIRAAAALSVPGK 603 (728)
T ss_pred h--------------------ccceEeehhhhhhcCCCC
Confidence 3 366788888888877544
No 250
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=86.27 E-value=0.74 Score=34.17 Aligned_cols=46 Identities=17% Similarity=0.173 Sum_probs=22.1
Q ss_pred ccccCccccCC-----Cceec--CCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338 14 FRCPISLDVMK-----SPVSL--CTGVTYDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 14 ~~Cpi~~~~~~-----dPv~~--~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
-+|.||++-.- +|.+. .|+.-.||.|.+--.+.|+..||+|+.++.
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 47999987543 36665 499999999988778888899999987654
No 251
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=86.24 E-value=18 Score=37.70 Aligned_cols=95 Identities=15% Similarity=0.274 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc--chhhHHHHHHHHHHhccccc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN--DVNMLKQVIRVLDLILNKIE 175 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~--~~~~~e~A~~~L~~L~~~~~ 175 (408)
...+..++.+....+.. |..|++.|-.++++++++...|++. |+.+|.+.+ +..++..++..|..+
T Consensus 58 ~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDv------L~QlL~tdd~~E~~~v~~sL~~ll~~----- 126 (556)
T PF05918_consen 58 EEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADV------LVQLLQTDDPVELDAVKNSLMSLLKQ----- 126 (556)
T ss_dssp HHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHH------HHHHTT---HHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHH------HHHHHhcccHHHHHHHHHHHHHHHhc-----
Confidence 67888889988888877 9999999999999877776666654 999998876 333334444443322
Q ss_pred chHHHHHHHhccCcccHHHHHHHHh---cCCChHHHHHHHHHHH
Q 036338 176 DQQHLMNLILKRDQDCLNSLLLVLK---QQESVDSRIESLRLLE 216 (408)
Q Consensus 176 ~~~~~~~~i~~~~~g~i~~Lv~lL~---~~~~~~~~~~Aa~~L~ 216 (408)
| . + +.+..|...+. ++ +..+|+.+...|.
T Consensus 127 d-~--k--------~tL~~lf~~i~~~~~~-de~~Re~~lkFl~ 158 (556)
T PF05918_consen 127 D-P--K--------GTLTGLFSQIESSKSG-DEQVRERALKFLR 158 (556)
T ss_dssp --H--H--------HHHHHHHHHHH---HS--HHHHHHHHHHHH
T ss_pred C-c--H--------HHHHHHHHHHHhcccC-chHHHHHHHHHHH
Confidence 2 1 2 22333444444 56 7788998877764
No 252
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=86.21 E-value=17 Score=39.79 Aligned_cols=173 Identities=15% Similarity=0.165 Sum_probs=104.9
Q ss_pred HHHHHHHHHHhcCCh--h-HHHHHHHHHHHhhh-ChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhccccc
Q 036338 100 DEVKDIIRVAISKNE--D-FSENLTKIVAFAKE-SDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIE 175 (408)
Q Consensus 100 ~~i~~Lv~~L~s~~~--~-~~~Al~~L~~la~~-~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~ 175 (408)
..+...+++|.+.+. + +..|..++..+... .+..+..+. ..++.+++-|+..- ..-.|+++|..++.+--
T Consensus 568 ~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~---~~L~il~eRl~nEi---TRl~AvkAlt~Ia~S~l 641 (1233)
T KOG1824|consen 568 TMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELP---RTLPILLERLGNEI---TRLTAVKALTLIAMSPL 641 (1233)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhH---HHHHHHHHHHhchh---HHHHHHHHHHHHHhccc
Confidence 344555666766554 3 66777776666432 122332322 34566666665543 23667788877765211
Q ss_pred chHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc--hhhHHhhhcChHHHHHHhcccCCCHHHHHH
Q 036338 176 DQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD--SKVKIAERDGLLAETVKSLSLDSDRRLIEA 253 (408)
Q Consensus 176 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 253 (408)
+-+ ..-+ -..+++.++..++.. ....|.....++..|..+.. .-....+ -++..+-.++... +..+.+.
T Consensus 642 ~i~--l~~~---l~~il~~l~~flrK~-~r~lr~~~l~a~~~L~~~~~~~~~~~~~e--~vL~el~~Lises-dlhvt~~ 712 (1233)
T KOG1824|consen 642 DID--LSPV---LTEILPELASFLRKN-QRALRLATLTALDKLVKNYSDSIPAELLE--AVLVELPPLISES-DLHVTQL 712 (1233)
T ss_pred eee--hhhh---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccccHHHHH--HHHHHhhhhhhHH-HHHHHHH
Confidence 111 1111 235678888888876 66777777777776655431 1111111 2344455556554 7788899
Q ss_pred HHHHHHHhccCcchHHHHHhcCcHHHHHHHhccC
Q 036338 254 SLSCLITISSSKRAKTKLINHKLITELGKLITDG 287 (408)
Q Consensus 254 A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~ 287 (408)
|...|..+..........+..-.++.++.+++||
T Consensus 713 a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~Sp 746 (1233)
T KOG1824|consen 713 AVAFLTTLAIIQPSSLLKISNPILDEIIRLLRSP 746 (1233)
T ss_pred HHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhCc
Confidence 9999999998887777667777899999999976
No 253
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=86.17 E-value=3.4 Score=30.68 Aligned_cols=67 Identities=15% Similarity=0.063 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcC
Q 036338 208 RIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHK 275 (408)
Q Consensus 208 ~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G 275 (408)
...|.+++.+++..+..-..+-+ .++++.++++........+|--+..+|.-+++..+....+-+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~~-~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDE-SDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhh-cCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 46789999999998887777765 78999999999876567888888899988898887777666655
No 254
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=85.89 E-value=0.094 Score=38.29 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=22.9
Q ss_pred cccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338 13 FFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
+..||.|+..| .-.-||.+|..|-.++.. ...||.|++++.
T Consensus 1 e~~CP~C~~~L----~~~~~~~~C~~C~~~~~~--~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQEL----EWQGGHYHCEACQKDYKK--EAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBE----EEETTEEEETTT--EEEE--EEE-TTT-SB-E
T ss_pred CCcCCCCCCcc----EEeCCEEECcccccccee--cccCCCcccHHH
Confidence 46899999864 333489999999665433 246999998864
No 255
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=85.87 E-value=4.1 Score=37.48 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHhcC-------cHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHH
Q 036338 249 RLIEASLSCLITISSSKRAKTKLINHK-------LITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVE 321 (408)
Q Consensus 249 ~~~~~A~~aL~~Ls~~~~n~~~~~~~G-------~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~ 321 (408)
.-++.|+.+|..||..+.|...+...+ .+..|+.+|.. .++...+|.|+.+|.
T Consensus 139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~--------------------~e~~v~REfAvvlL~ 198 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGM--------------------REDQVCREFAVVLLS 198 (257)
T ss_pred CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhcc--------------------ccchhHHHHHHHHHH
Confidence 568999999999999888877666543 44556666654 458899999999999
Q ss_pred HHhCCHHHH-HHHHhhcCchHHHHHHHH
Q 036338 322 ILSTTKQGR-MEICQDAALLNGVVQKML 348 (408)
Q Consensus 322 ~L~~~~~~~-~~~~~~~g~i~~lv~~l~ 348 (408)
+|+..++.- ..++.+.+.|..|+..+-
T Consensus 199 ~La~~~~~~~r~iA~q~~~i~~Li~FiE 226 (257)
T PF12031_consen 199 NLAQGDEAAARAIAMQKPCISHLIAFIE 226 (257)
T ss_pred HHhcccHHHHHHHHHhhchHHHHHHHHH
Confidence 999754433 345555688888888543
No 256
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=85.73 E-value=2.8 Score=38.53 Aligned_cols=83 Identities=17% Similarity=0.165 Sum_probs=65.2
Q ss_pred ChHHHHHHHHHHHHhhcCcchhhHHhhh------cChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchH--HHHHhcC
Q 036338 204 SVDSRIESLRLLEFIAGDADSKVKIAER------DGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAK--TKLINHK 275 (408)
Q Consensus 204 ~~~~~~~Aa~~L~~La~~~~~~~~i~~~------~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~--~~~~~~G 275 (408)
...-|..|..+|.+|+..+.|-..|..+ +..+..|+++|....++-.++-|.-.|.+|+..+... ....+.+
T Consensus 137 ~lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 137 PLSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CCCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 4567889999999999888777766531 2356667777776668899999999999999988743 3334799
Q ss_pred cHHHHHHHhcc
Q 036338 276 LITELGKLITD 286 (408)
Q Consensus 276 ~i~~Lv~lL~~ 286 (408)
.|..|+..+.+
T Consensus 217 ~i~~Li~FiE~ 227 (257)
T PF12031_consen 217 CISHLIAFIED 227 (257)
T ss_pred hHHHHHHHHHH
Confidence 99999999975
No 257
>PLN02195 cellulose synthase A
Probab=85.58 E-value=0.72 Score=50.40 Aligned_cols=45 Identities=9% Similarity=0.087 Sum_probs=36.4
Q ss_pred cccCccc-----cCCCceec--CCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338 15 RCPISLD-----VMKSPVSL--CTGVTYDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 15 ~Cpi~~~-----~~~dPv~~--~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
.|.||++ .+-+|.+. .||.-.||.|.+-=-++|+..||+|+..+.
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 6999998 44468776 499999999985446678889999998776
No 258
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.30 E-value=0.63 Score=46.29 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=29.0
Q ss_pred cccccCccccCCCc----eecCCCCcccHhhHHHHHhc-----CCCCCCCc
Q 036338 13 FFRCPISLDVMKSP----VSLCTGVTYDRASIQRWLDS-----GNNTCPAT 54 (408)
Q Consensus 13 ~~~Cpi~~~~~~dP----v~~~cgh~f~r~cI~~~~~~-----~~~~CP~~ 54 (408)
...|.||..-+.++ .+..|||.||..|..++++. ....||.-
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~ 196 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHD 196 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCC
Confidence 46899999322222 24579999999999999863 22457763
No 259
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=84.90 E-value=17 Score=34.01 Aligned_cols=172 Identities=19% Similarity=0.145 Sum_probs=98.1
Q ss_pred HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCCh-HHHHHHHhhcCc---chhhHHHHHHHHHHhccccc
Q 036338 101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGL-VVMLVEILSNVN---DVNMLKQVIRVLDLILNKIE 175 (408)
Q Consensus 101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~-i~~Lv~lL~s~~---~~~~~e~A~~~L~~L~~~~~ 175 (408)
.+..++..+.+-..+ +.-++.-+|-++. ++..-..+...++. ...+..++.... ....+--++++|.|+.. +
T Consensus 64 ~~~~~~~~~~~Wp~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~--~ 140 (268)
T PF08324_consen 64 WLILLLKILLSWPPESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFS--H 140 (268)
T ss_dssp HHHHHHHHHCCS-CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTT--S
T ss_pred HHHHHHHHHHhCCCccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhC--C
Confidence 344445555554444 6667777766655 45555566554233 455666665543 23334668899999876 4
Q ss_pred chHHHHHHHhccCcc-cHHHHHHHHhcCC---ChHHHHHHHHHHHHhhcCcc-hh--hHHhhhcChHHHHHHhc-ccCCC
Q 036338 176 DQQHLMNLILKRDQD-CLNSLLLVLKQQE---SVDSRIESLRLLEFIAGDAD-SK--VKIAERDGLLAETVKSL-SLDSD 247 (408)
Q Consensus 176 ~~~~~~~~i~~~~~g-~i~~Lv~lL~~~~---~~~~~~~Aa~~L~~La~~~~-~~--~~i~~~~g~i~~Lv~lL-~~~~~ 247 (408)
... +..+. ...+ .+...+..+.... +...|..++.++.|++..-. .+ .... ...+..+++.+ ....+
T Consensus 141 ~~~--~~~~~-~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~--~~ll~~i~~~~~~~~~d 215 (268)
T PF08324_consen 141 PPG--RQLLL-SHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQ--SELLSSIIEVLSREESD 215 (268)
T ss_dssp CCC--HHHHH-CTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHH--HHHHHHHHHHCHCCHTS
T ss_pred Ccc--HHHHH-hcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHH--HHHHHHHHHHhccccCC
Confidence 444 44443 1233 3333333333221 46788899999999985321 11 1111 12456666633 33358
Q ss_pred HHHHHHHHHHHHHhccCcchHHHHHh-cCcHHHH
Q 036338 248 RRLIEASLSCLITISSSKRAKTKLIN-HKLITEL 280 (408)
Q Consensus 248 ~~~~~~A~~aL~~Ls~~~~n~~~~~~-~G~i~~L 280 (408)
+++.-.++-||.+|...+.....+.. .|+-..+
T Consensus 216 ~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~ 249 (268)
T PF08324_consen 216 EEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVL 249 (268)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHH
T ss_pred HHHHHHHHHHHHHHhccChhHHHHHHHcChHHHH
Confidence 89999999999999987777777665 3443333
No 260
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.84 E-value=30 Score=36.79 Aligned_cols=87 Identities=15% Similarity=0.191 Sum_probs=65.2
Q ss_pred ccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHH
Q 036338 190 DCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKT 269 (408)
Q Consensus 190 g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~ 269 (408)
.++..|-.+|.+. ....|--|..-+..|+........+-. . .+.++..|+...|..+++.|+..||.+|.. +|.+
T Consensus 329 ~~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~s~davK~-h--~d~Ii~sLkterDvSirrravDLLY~mcD~-~Nak 403 (938)
T KOG1077|consen 329 RAVNQLGQFLSHR-ETNIRYLALESMCKLASSEFSIDAVKK-H--QDTIINSLKTERDVSIRRRAVDLLYAMCDV-SNAK 403 (938)
T ss_pred HHHHHHHHHhhcc-cccchhhhHHHHHHHHhccchHHHHHH-H--HHHHHHHhccccchHHHHHHHHHHHHHhch-hhHH
Confidence 4567777777776 677788888888888877666666654 3 688889999656889999999999999975 3555
Q ss_pred HHHhcCcHHHHHHHhcc
Q 036338 270 KLINHKLITELGKLITD 286 (408)
Q Consensus 270 ~~~~~G~i~~Lv~lL~~ 286 (408)
.|| .-|++.|.+
T Consensus 404 ~IV-----~elLqYL~t 415 (938)
T KOG1077|consen 404 QIV-----AELLQYLET 415 (938)
T ss_pred HHH-----HHHHHHHhh
Confidence 555 447777764
No 261
>PLN02189 cellulose synthase
Probab=84.81 E-value=0.7 Score=50.80 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=36.7
Q ss_pred ccccCccccCC-----CceecC--CCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338 14 FRCPISLDVMK-----SPVSLC--TGVTYDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 14 ~~Cpi~~~~~~-----dPv~~~--cgh~f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
-.|+||++-.- +|.+.+ ||.-.||.|.|-=.++|+..||+|+..+.
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 38999998643 476663 99999999996556778899999997654
No 262
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.75 E-value=32 Score=38.62 Aligned_cols=177 Identities=16% Similarity=0.162 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhhhCh-hhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcc--cccchHHHHHHHhccCcccH
Q 036338 116 FSENLTKIVAFAKESD-ENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILN--KIEDQQHLMNLILKRDQDCL 192 (408)
Q Consensus 116 ~~~Al~~L~~la~~~~-~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~--~~~~~~~~~~~i~~~~~g~i 192 (408)
+..++.+|..+.+..+ ++...+.+. ||-++-+++..+ ....+.|...|..+.. ...++..=+ ..-.|
T Consensus 714 ~~~rl~~L~~L~~~~~~e~~~~i~k~---I~EvIL~~Ke~n-~~aR~~Af~lL~~i~~i~~~~d~g~e~------~~~~l 783 (1176)
T KOG1248|consen 714 QASRLKCLKRLLKLLSAEHCDLIPKL---IPEVILSLKEVN-VKARRNAFALLVFIGAIQSSLDDGNEP------ASAIL 783 (1176)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHH---HHHHHHhccccc-HHHHhhHHHHHHHHHHHHhhhcccccc------hHHHH
Confidence 7777777777776655 444444443 444454444443 3333788888877762 000100000 01256
Q ss_pred HHHHHHHhcCC-ChHHHHHHHHHHHHhhc-CcchhhHHhh--hcChHHHHHHhcccCCCHHHHHHHHHHHHHhccC-cch
Q 036338 193 NSLLLVLKQQE-SVDSRIESLRLLEFIAG-DADSKVKIAE--RDGLLAETVKSLSLDSDRRLIEASLSCLITISSS-KRA 267 (408)
Q Consensus 193 ~~Lv~lL~~~~-~~~~~~~Aa~~L~~La~-~~~~~~~i~~--~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~-~~n 267 (408)
..++..+.-|- ..+.+..+.. |..+.. ..+.+..+.. ..+.+..+..+|.+. +++.+++|.+++.-++.. ++.
T Consensus 784 nefl~~Isagl~gd~~~~~as~-Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~~pe~ 861 (1176)
T KOG1248|consen 784 NEFLSIISAGLVGDSTRVVASD-IVAITHILQEFKNILDDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYKFPEE 861 (1176)
T ss_pred HHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHcCCHH
Confidence 66666665431 2233333332 332221 1122222211 134555555566665 999999999999998875 333
Q ss_pred HHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 268 KTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 268 ~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
...--..-.+|.+..++.+. ...++.+....|..|..
T Consensus 862 ~l~~~~~~LL~sll~ls~d~---------------------k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 862 CLSPHLEELLPSLLALSHDH---------------------KIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred HHhhhHHHHHHHHHHHHHhh---------------------hHHHHHHHHHHHHHHHH
Confidence 33333444778888877653 56777777778888765
No 263
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.65 E-value=15 Score=39.35 Aligned_cols=155 Identities=15% Similarity=0.096 Sum_probs=97.1
Q ss_pred ChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC
Q 036338 142 GLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD 221 (408)
Q Consensus 142 G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~ 221 (408)
..++++.+.+.+....-..-+++.+|.||+. .++.. |..|. +.-+++.+-.++... ++-.|..++..+.||...
T Consensus 541 ~v~~~~~s~~~~d~~~~en~E~L~altnLas--~s~s~-r~~i~--ke~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~ 614 (748)
T KOG4151|consen 541 EVVKPLDSALHNDEKGLENFEALEALTNLAS--ISESD-RQKIL--KEKALGKIEELMTEE-NPALQRAALESIINLLWS 614 (748)
T ss_pred hhhhhhcchhhhhHHHHHHHHHHHHhhcccC--cchhh-HHHHH--HHhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhh
Confidence 4455555555544411123678889999986 44333 44455 555555555555555 788889999999999887
Q ss_pred cc-hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHH-HH-hcCcHHHHHHHhccCCCCCCCCCCCC
Q 036338 222 AD-SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTK-LI-NHKLITELGKLITDGHNGNGSGNGNG 298 (408)
Q Consensus 222 ~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~-~~-~~G~i~~Lv~lL~~~~~~~~~~~~~~ 298 (408)
+. ....+++-....+.....+... +.....++++++..+....+|.-. +. -......++.++.+.
T Consensus 615 ~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~----------- 682 (748)
T KOG4151|consen 615 PLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE----------- 682 (748)
T ss_pred HHHHHHHhhccccCchHHHHHHHhh-hhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-----------
Confidence 75 5566665344567666666664 666777788888766665554332 33 345666777777653
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHHh
Q 036338 299 NGNGNGSGNGTVLITEKALRLVEILS 324 (408)
Q Consensus 299 ~~~~~~~~~~~~~~~~~a~~~L~~L~ 324 (408)
+..++...+....|+.
T Consensus 683 ----------~~~~qhrgl~~~ln~~ 698 (748)
T KOG4151|consen 683 ----------DDEIQHRGLVIILNLF 698 (748)
T ss_pred ----------hhhhhhhhhhhhhhHH
Confidence 6667766666666643
No 264
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=84.17 E-value=51 Score=35.45 Aligned_cols=142 Identities=14% Similarity=0.089 Sum_probs=86.1
Q ss_pred hChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHH-HhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHH
Q 036338 129 ESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLD-LILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDS 207 (408)
Q Consensus 129 ~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~-~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~ 207 (408)
....-+...++. |+...|+++..... ......+..+|. .+.. ..+ . ....++++...+.+......
T Consensus 492 ~~K~~~~~~Ik~-~~~~aLlrl~~~q~-e~akl~~~~aL~~~i~f---~~~---~-----~~~v~~~~~s~~~~d~~~~e 558 (748)
T KOG4151|consen 492 KEKYERAKKIKP-GGYEALLRLGQQQF-EEAKLKWYHALAGKIDF---PGE---R-----SYEVVKPLDSALHNDEKGLE 558 (748)
T ss_pred hhHHhcCccccc-cHHHHHHHHHHHhc-hHHHHHHHHHHhhhcCC---CCC---c-----hhhhhhhhcchhhhhHHHHH
Confidence 334556678888 99999999987665 122244444554 3322 111 1 23456677776665411122
Q ss_pred HHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchH-HHHHh-cCcHHHHHHHh
Q 036338 208 RIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAK-TKLIN-HKLITELGKLI 284 (408)
Q Consensus 208 ~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~-~~~~~-~G~i~~Lv~lL 284 (408)
.-.+..++.||+..+ ..|..|.. .-+++.+-.++-+. ++..+++++..+.||..++.-- ..+++ ...++.....+
T Consensus 559 n~E~L~altnLas~s~s~r~~i~k-e~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~ 636 (748)
T KOG4151|consen 559 NFEALEALTNLASISESDRQKILK-EKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNL 636 (748)
T ss_pred HHHHHHHhhcccCcchhhHHHHHH-HhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHH
Confidence 345788888888754 46666765 44555555555554 8899999999999999887643 33344 44455555444
Q ss_pred c
Q 036338 285 T 285 (408)
Q Consensus 285 ~ 285 (408)
.
T Consensus 637 e 637 (748)
T KOG4151|consen 637 E 637 (748)
T ss_pred H
Confidence 3
No 265
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.06 E-value=26 Score=37.49 Aligned_cols=169 Identities=14% Similarity=0.189 Sum_probs=101.3
Q ss_pred HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH
Q 036338 101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH 179 (408)
Q Consensus 101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~ 179 (408)
....+.+.++..++. |..++..+..+- ..+.+...+. |.++.|-.++.+.+ +.++.+|+.+|..+.. .+.+.
T Consensus 122 ~~~Pl~~~l~d~~~yvRktaa~~vakl~---~~~~~~~~~~-gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e--~~~~~ 194 (734)
T KOG1061|consen 122 LCDPLLKCLKDDDPYVRKTAAVCVAKLF---DIDPDLVEDS-GLVDALKDLLSDSN-PMVVANALAALSEIHE--SHPSV 194 (734)
T ss_pred HHHHHHHhccCCChhHHHHHHHHHHHhh---cCChhhcccc-chhHHHHHHhcCCC-chHHHHHHHHHHHHHH--hCCCC
Confidence 345666677777766 777777766663 3445677788 99999999998443 5567899999988864 12110
Q ss_pred HHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHH
Q 036338 180 LMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLI 259 (408)
Q Consensus 180 ~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~ 259 (408)
..... ..-.+..++ ... +...-..-+.+|..++..-.... .+....+..+...|.+. ++.+.-.+..+++
T Consensus 195 -~~~~l--~~~~~~~lL---~al-~ec~EW~qi~IL~~l~~y~p~d~--~ea~~i~~r~~p~Lqh~-n~avvlsavKv~l 264 (734)
T KOG1061|consen 195 -NLLEL--NPQLINKLL---EAL-NECTEWGQIFILDCLAEYVPKDS--REAEDICERLTPRLQHA-NSAVVLSAVKVIL 264 (734)
T ss_pred -Ccccc--cHHHHHHHH---HHH-HHhhhhhHHHHHHHHHhcCCCCc--hhHHHHHHHhhhhhccC-CcceEeehHHHHH
Confidence 00000 122222333 333 44444455566666665422111 11123456666677765 6667777888888
Q ss_pred HhccCcchHHHHHhcCcHHHHHHHhcc
Q 036338 260 TISSSKRAKTKLINHKLITELGKLITD 286 (408)
Q Consensus 260 ~Ls~~~~n~~~~~~~G~i~~Lv~lL~~ 286 (408)
.+.....+.....-....++|+.++++
T Consensus 265 ~~~~~~~~~~~~~~~K~~~pl~tlls~ 291 (734)
T KOG1061|consen 265 QLVKYLKQVNELLFKKVAPPLVTLLSS 291 (734)
T ss_pred HHHHHHHHHHHHHHHHhcccceeeecc
Confidence 877765555555556677788887765
No 266
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=82.69 E-value=42 Score=34.73 Aligned_cols=153 Identities=12% Similarity=0.232 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc---chhhHHHHHHHHHHhccccc
Q 036338 100 DEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN---DVNMLKQVIRVLDLILNKIE 175 (408)
Q Consensus 100 ~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~---~~~~~e~A~~~L~~L~~~~~ 175 (408)
.....+.+.+.+++.. |..|++.|..+..+ ...-..++.. .++..|..++.++. ....+...+.++..+.. +
T Consensus 83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~-~gl~~L~~liedg~~~~~~~~L~~~L~af~elme--h 158 (713)
T KOG2999|consen 83 HYAKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRC-SGLELLFSLIEDGRVCMSSELLSTSLRAFSELME--H 158 (713)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhc-chHHHHHHHHHcCccchHHHHHHHHHHHHHHHHh--h
Confidence 4567888899998877 88899999999876 5666667777 78999999998876 22233444455444321 1
Q ss_pred chHHHHHHHhccCcccHHHHHHHHhcC-CChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHH
Q 036338 176 DQQHLMNLILKRDQDCLNSLLLVLKQQ-ESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEAS 254 (408)
Q Consensus 176 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~-~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A 254 (408)
.--. -+.+ ...+|...+.+.... .+..+-..|...|.++....+.........--+..|+..|+.. +......|
T Consensus 159 gvvs-W~~~---~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~-n~~i~~~a 233 (713)
T KOG2999|consen 159 GVVS-WESV---SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS-NQRIQTCA 233 (713)
T ss_pred ceee-eeec---ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc-chHHHHHH
Confidence 1000 0001 122233333333221 1445667888999999887764444444377899999999986 76777776
Q ss_pred HHHHHHh
Q 036338 255 LSCLITI 261 (408)
Q Consensus 255 ~~aL~~L 261 (408)
...|-.|
T Consensus 234 ial~nal 240 (713)
T KOG2999|consen 234 IALLNAL 240 (713)
T ss_pred HHHHHHH
Confidence 5555555
No 267
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=82.31 E-value=78 Score=34.18 Aligned_cols=153 Identities=18% Similarity=0.198 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhcCChh-HHHHHHHHHHHhhhCh--hhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338 100 DEVKDIIRVAISKNED-FSENLTKIVAFAKESD--ENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED 176 (408)
Q Consensus 100 ~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~--~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~ 176 (408)
.-+..++..|.+.++. +.+|+..+..++.--. .--+.+... |.| |.+.|.... .+++-..+.+|..+... ..
T Consensus 799 qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~l-Gvv--LyEylgeey-pEvLgsILgAikaI~nv-ig 873 (1172)
T KOG0213|consen 799 QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHL-GVV--LYEYLGEEY-PEVLGSILGAIKAIVNV-IG 873 (1172)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHh-hHH--HHHhcCccc-HHHHHHHHHHHHHHHHh-cc
Confidence 3445666777777777 8888888877764211 111233333 433 556665544 33333344444333210 11
Q ss_pred hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338 177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS 256 (408)
Q Consensus 177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~ 256 (408)
-..+..- -.+.+|.|.-+|++. ...++++...++..++..........+=..+--.|+++|+.. ..+.+++|..
T Consensus 874 m~km~pP----i~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah-kK~iRRaa~n 947 (1172)
T KOG0213|consen 874 MTKMTPP----IKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAH-KKEIRRAAVN 947 (1172)
T ss_pred ccccCCC----hhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 1100111 247899999999998 899999999999999976432221111111234588888875 7789999998
Q ss_pred HHHHhcc
Q 036338 257 CLITISS 263 (408)
Q Consensus 257 aL~~Ls~ 263 (408)
.+..++.
T Consensus 948 TfG~Iak 954 (1172)
T KOG0213|consen 948 TFGYIAK 954 (1172)
T ss_pred hhhHHHH
Confidence 8887765
No 268
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.09 E-value=47 Score=35.89 Aligned_cols=169 Identities=20% Similarity=0.226 Sum_probs=101.0
Q ss_pred HHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHH
Q 036338 104 DIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLM 181 (408)
Q Consensus 104 ~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~ 181 (408)
.|..+|.+.... +.+|++.|..+........ ...|.+|+-..+.+ +++ ...---|...+. .+.+ -
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS-------~~Fp~VVKNVaskn~EVK--kLVyvYLlrYAE--eqpd--L 105 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKDVS-------LLFPAVVKNVASKNIEVK--KLVYVYLLRYAE--EQPD--L 105 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCcHH-------HHHHHHHHHhhccCHHHH--HHHHHHHHHHhh--cCCC--c
Confidence 366777776554 8999998877754433322 45667788877766 333 333222333332 1111 1
Q ss_pred HHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 036338 182 NLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITI 261 (408)
Q Consensus 182 ~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~L 261 (408)
.++ -|..+=+-|+.+ +..+|..|.++|..+- ..+.. .=++-++-+...+. ++-+|+.|+.||-.|
T Consensus 106 ALL------SIntfQk~L~Dp-N~LiRasALRvlSsIR------vp~Ia-PI~llAIk~~~~D~-s~yVRk~AA~AIpKL 170 (968)
T KOG1060|consen 106 ALL------SINTFQKALKDP-NQLIRASALRVLSSIR------VPMIA-PIMLLAIKKAVTDP-SPYVRKTAAHAIPKL 170 (968)
T ss_pred eee------eHHHHHhhhcCC-cHHHHHHHHHHHHhcc------hhhHH-HHHHHHHHHHhcCC-cHHHHHHHHHhhHHH
Confidence 122 366777778888 9999987777766542 22222 11223333455565 889999999999988
Q ss_pred ccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 262 SSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 262 s~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
=+-+.+.... .+..+=.||.+ .++.+...|+.+....|-
T Consensus 171 YsLd~e~k~q----L~e~I~~LLaD---------------------~splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 171 YSLDPEQKDQ----LEEVIKKLLAD---------------------RSPLVVGSAVMAFEEVCP 209 (968)
T ss_pred hcCChhhHHH----HHHHHHHHhcC---------------------CCCcchhHHHHHHHHhch
Confidence 6654433321 23445556654 378888888888887763
No 269
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=82.07 E-value=36 Score=34.63 Aligned_cols=130 Identities=17% Similarity=0.151 Sum_probs=89.2
Q ss_pred HHHHHhcCChh-HHHHHHHHHHHhhhCh---hhhhhhhhcCChHHHHHHHhhcCc------chhhHHHHHHHHHHhcccc
Q 036338 105 IIRVAISKNED-FSENLTKIVAFAKESD---ENKTFLAKFDGLVVMLVEILSNVN------DVNMLKQVIRVLDLILNKI 174 (408)
Q Consensus 105 Lv~~L~s~~~~-~~~Al~~L~~la~~~~---~~r~~i~~~~G~i~~Lv~lL~s~~------~~~~~e~A~~~L~~L~~~~ 174 (408)
+...++..+.+ |..|+--.-.+++.++ .+|+.+-++ =+.+.+=++|.+.+ +.-...-++.+|..++.
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeA-VGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~-- 92 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEA-VGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR-- 92 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHH-hccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC--
Confidence 44555554444 8889988888887644 467788888 77899999997755 11123446677777775
Q ss_pred cchHH-HHHHHhccCcccHHHHHHHHhcCCChH------HHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcc
Q 036338 175 EDQQH-LMNLILKRDQDCLNSLLLVLKQQESVD------SRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLS 243 (408)
Q Consensus 175 ~~~~~-~~~~i~~~~~g~i~~Lv~lL~~~~~~~------~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~ 243 (408)
+++- .+..++ ..||.|...+..+.+++ +-+.+-..|..++..+.....+.. .|+++.+-++-.
T Consensus 93 -~pElAsh~~~v----~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia-~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 93 -VPELASHEEMV----SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIA-SGGLRVIAQMYE 162 (698)
T ss_pred -ChhhccCHHHH----HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHh-cCchHHHHHHHh
Confidence 3331 122232 56899999998754544 567788889999988777777766 789998887654
No 270
>PLN02436 cellulose synthase A
Probab=82.02 E-value=1.1 Score=49.51 Aligned_cols=46 Identities=22% Similarity=0.374 Sum_probs=36.6
Q ss_pred ccccCccccC-----CCceecC--CCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338 14 FRCPISLDVM-----KSPVSLC--TGVTYDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 14 ~~Cpi~~~~~-----~dPv~~~--cgh~f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
-.|.||++-. -+|.+.+ ||.-.||.|.+-=.++|+..||+|+..+.
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 3899999863 3477764 99999999996556778889999997754
No 271
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=81.73 E-value=0.97 Score=49.91 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=36.1
Q ss_pred ccccCcccc-----CCCceec--CCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338 14 FRCPISLDV-----MKSPVSL--CTGVTYDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 14 ~~Cpi~~~~-----~~dPv~~--~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
-.|.||++- .-+|.+. .||.-.||.|.|-=.++|+..||+|+..+.
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 389999986 3347776 499999999985556778899999987654
No 272
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=81.58 E-value=20 Score=33.52 Aligned_cols=105 Identities=18% Similarity=0.157 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHH
Q 036338 116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSL 195 (408)
Q Consensus 116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~L 195 (408)
+-.|+..|++.-.+ .+|-.|++-|..++ .-.+.++..+|+.|- ..-+|+.|
T Consensus 173 Ry~amF~LRn~g~E------------eaI~al~~~l~~~S-alfrhEvAfVfGQl~----------------s~~ai~~L 223 (289)
T KOG0567|consen 173 RYRAMFYLRNIGTE------------EAINALIDGLADDS-ALFRHEVAFVFGQLQ----------------SPAAIPSL 223 (289)
T ss_pred HHhhhhHhhccCcH------------HHHHHHHHhcccch-HHHHHHHHHHHhhcc----------------chhhhHHH
Confidence 55677777765332 22333343333332 212366666666542 33457777
Q ss_pred HHHHhc-CCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 036338 196 LLVLKQ-QESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITI 261 (408)
Q Consensus 196 v~lL~~-~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~L 261 (408)
.+.|.. ..++.+|..|+.+|+.++ . ...++.|.+++.+. ++-+++.+.-||--+
T Consensus 224 ~k~L~d~~E~pMVRhEaAeALGaIa----------~-e~~~~vL~e~~~D~-~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 224 IKVLLDETEHPMVRHEAAEALGAIA----------D-EDCVEVLKEYLGDE-ERVVRESCEVALDML 278 (289)
T ss_pred HHHHHhhhcchHHHHHHHHHHHhhc----------C-HHHHHHHHHHcCCc-HHHHHHHHHHHHHHH
Confidence 777764 237889999999999876 2 45688888999886 666666666666543
No 273
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=81.58 E-value=0.67 Score=32.14 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=23.2
Q ss_pred CcccccCccccCCCceecCCCCcccHhhHHHHHhc-CCCCCCCccc
Q 036338 12 SFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDS-GNNTCPATMQ 56 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~-~~~~CP~~~~ 56 (408)
+.|.||.|++.|... .+.+-+.++...+ ....||+|..
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchh
Confidence 468999998844432 2444554444333 3467999975
No 274
>PF04641 Rtf2: Rtf2 RING-finger
Probab=81.06 E-value=1.2 Score=41.77 Aligned_cols=34 Identities=21% Similarity=0.480 Sum_probs=30.5
Q ss_pred cccccCccccCCCceec-CCCCcccHhhHHHHHhc
Q 036338 13 FFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDS 46 (408)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~ 46 (408)
-..|+|+++.|.+||+. .-|+-|.++.|-+|+-.
T Consensus 34 w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~ 68 (260)
T PF04641_consen 34 WTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLD 68 (260)
T ss_pred cCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHh
Confidence 46899999999999976 59999999999999854
No 275
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=80.64 E-value=62 Score=36.19 Aligned_cols=192 Identities=11% Similarity=0.020 Sum_probs=112.4
Q ss_pred HHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHH
Q 036338 102 VKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHL 180 (408)
Q Consensus 102 i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~ 180 (408)
+..|++.++..+.. +-.|++.+..++...+ ..+++ -+|...++++...++...-..|+.+|+.|+.
T Consensus 343 ie~Lls~l~d~dt~VrWSaAKg~grvt~rlp---~~Lad--~vi~svid~~~p~e~~~aWHgacLaLAELA~-------- 409 (1133)
T KOG1943|consen 343 IEHLLSALSDTDTVVRWSAAKGLGRVTSRLP---PELAD--QVIGSVIDLFNPAEDDSAWHGACLALAELAL-------- 409 (1133)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHccCc---HHHHH--HHHHHHHHhcCcCCchhHHHHHHHHHHHHHh--------
Confidence 44455555555656 7789999999988766 33443 3566677755444333344677778887775
Q ss_pred HHHHhc-cCcccHHHHHHHHhc----C---CChHHHHHHHHHHHHhhcCcchh--hHHhhhcChHHH-HHHhcccCCCHH
Q 036338 181 MNLILK-RDQDCLNSLLLVLKQ----Q---ESVDSRIESLRLLEFIAGDADSK--VKIAERDGLLAE-TVKSLSLDSDRR 249 (408)
Q Consensus 181 ~~~i~~-~~~g~i~~Lv~lL~~----~---~~~~~~~~Aa~~L~~La~~~~~~--~~i~~~~g~i~~-Lv~lL~~~~~~~ 249 (408)
+.++.- .=..++|.+++-|.. | ....+|..|+.+++.++...+.. +-+.. ..... |..-+-+. +..
T Consensus 410 rGlLlps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~--~L~s~LL~~AlFDr-evn 486 (1133)
T KOG1943|consen 410 RGLLLPSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ--SLASALLIVALFDR-EVN 486 (1133)
T ss_pred cCCcchHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH--HHHHHHHHHHhcCc-hhh
Confidence 222210 001345555555532 1 13568889999999888654322 11211 12222 23333344 678
Q ss_pred HHHHHHHHHHHhccCcc---------------------h-----HHHHHh-cCcHHHHHHHhccCCCCCCCCCCCCCCCC
Q 036338 250 LIEASLSCLITISSSKR---------------------A-----KTKLIN-HKLITELGKLITDGHNGNGSGNGNGNGNG 302 (408)
Q Consensus 250 ~~~~A~~aL~~Ls~~~~---------------------n-----~~~~~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~ 302 (408)
++++|..||-....-.. | ...+.+ .|...++++.|-..
T Consensus 487 cRRAAsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~--------------- 551 (1133)
T KOG1943|consen 487 CRRAASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTK--------------- 551 (1133)
T ss_pred HhHHHHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhc---------------
Confidence 99999999987642211 1 122332 56677777766431
Q ss_pred CCCCCCCcchHHHHHHHHHHHhC
Q 036338 303 NGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 303 ~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
.-...|..+++.++.+|.+|+.
T Consensus 552 -Kv~HWd~~irelaa~aL~~Ls~ 573 (1133)
T KOG1943|consen 552 -KVCHWDVKIRELAAYALHKLSL 573 (1133)
T ss_pred -ccccccHHHHHHHHHHHHHHHH
Confidence 1225789999999999999875
No 276
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=80.42 E-value=39 Score=35.80 Aligned_cols=80 Identities=13% Similarity=0.087 Sum_probs=52.5
Q ss_pred cccHHHHHHHHh----cCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccC--CCHHHHHHHHHHHHHhc
Q 036338 189 QDCLNSLLLVLK----QQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLD--SDRRLIEASLSCLITIS 262 (408)
Q Consensus 189 ~g~i~~Lv~lL~----~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~~A~~aL~~Ls 262 (408)
.-.++.|...|. .+ +.+.+.-+..+|+|+. . ...++.|..++... .+..++-+|++||+.+.
T Consensus 485 ~~~~~~l~~~l~~~~~~~-~~~~~~~~LkaLgN~g----------~-~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~ 552 (618)
T PF01347_consen 485 EKYVPYLEQELKEAVSRG-DEEEKIVYLKALGNLG----------H-PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLA 552 (618)
T ss_dssp GGGTHHHHHHHHHHHHTT--HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGG
T ss_pred HHHHHHHHHHHHHHhhcc-CHHHHHHHHHHhhccC----------C-chhhHHHHhHhhhccccchHHHHHHHHHHHHHh
Confidence 355677776666 34 6677888889998875 2 34678888888754 35688889999999885
Q ss_pred cCcchHHHHHhcCcHHHHHHHhccC
Q 036338 263 SSKRAKTKLINHKLITELGKLITDG 287 (408)
Q Consensus 263 ~~~~n~~~~~~~G~i~~Lv~lL~~~ 287 (408)
....+. +.+.|+.++.+.
T Consensus 553 ~~~~~~-------v~~~l~~I~~n~ 570 (618)
T PF01347_consen 553 KHCPEK-------VREILLPIFMNT 570 (618)
T ss_dssp GT-HHH-------HHHHHHHHHH-T
T ss_pred hcCcHH-------HHHHHHHHhcCC
Confidence 543322 346677777764
No 277
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=80.11 E-value=75 Score=33.68 Aligned_cols=162 Identities=18% Similarity=0.175 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhhhChhhhhhhh---hcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccH
Q 036338 116 FSENLTKIVAFAKESDENKTFLA---KFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCL 192 (408)
Q Consensus 116 ~~~Al~~L~~la~~~~~~r~~i~---~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i 192 (408)
+.-|+..||.++..+..+-..+- .. ..+..++..+.. ++..+-.++..|.|+.. +... ++.+.....-.+
T Consensus 561 ~fPalDilRl~v~h~~~~s~~~~~~~~~-~~~~~li~~~~~--~~an~ll~vR~L~N~f~--~~~g--~~~~~s~~~~i~ 633 (745)
T KOG0301|consen 561 MFPALDILRLAVKHHSSNSLFCDREEGQ-NLVGTLIPILNA--DPANQLLVVRCLANLFS--NPAG--RELFMSRLESIL 633 (745)
T ss_pred hhhHHHHHHHHHhccchhhhhhhhhhhh-HHHHhhhccccc--chhHHHHHHHHHHHhcc--CHHH--HHHHHHHHHHHh
Confidence 55577777777665433322222 12 233344444431 23334678889999876 4333 444431111122
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhc--CcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHH
Q 036338 193 NSLLLVLKQQESVDSRIESLRLLEFIAG--DADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTK 270 (408)
Q Consensus 193 ~~Lv~lL~~~~~~~~~~~Aa~~L~~La~--~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~ 270 (408)
..++. .+++.+...+...+....|++. ..++-+ +...+-....+..+++.-.+.++.=.++.||.+|+..+.+..+
T Consensus 634 ~~~~~-~~s~~~knl~ia~atlaln~sv~l~~~~~~-~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~ 711 (745)
T KOG0301|consen 634 DPVIE-ASSLSNKNLQIALATLALNYSVLLIQDNEQ-LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQ 711 (745)
T ss_pred hhhhh-hhcccchhHHHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHH
Confidence 22222 2333245566555555555553 222211 2110112222233333222445666788899999999989999
Q ss_pred HHhcCcHHHHHHHhcc
Q 036338 271 LINHKLITELGKLITD 286 (408)
Q Consensus 271 ~~~~G~i~~Lv~lL~~ 286 (408)
+...-.|..++.-+++
T Consensus 712 ~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 712 LAKNRSVDSIAKKLKE 727 (745)
T ss_pred HHHhcCHHHHHHHHHH
Confidence 9887788888888876
No 278
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=79.79 E-value=29 Score=31.77 Aligned_cols=137 Identities=15% Similarity=0.131 Sum_probs=90.0
Q ss_pred HHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcc----cCCCHHHHHHHHHHHHHhccCcc--hHHHHHhcCcHHHHHH
Q 036338 209 IESLRLLEFIAGDADSKVKIAERDGLLAETVKSLS----LDSDRRLIEASLSCLITISSSKR--AKTKLINHKLITELGK 282 (408)
Q Consensus 209 ~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~----~~~~~~~~~~A~~aL~~Ls~~~~--n~~~~~~~G~i~~Lv~ 282 (408)
.+|..+|.-++++++.|..+.. +-+--.|..+|. +..-.-.+-.+++.+..|..++. ....+....+||.++.
T Consensus 118 cnaL~lLQclaShPetk~~Fl~-AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr 196 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLD-AHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR 196 (315)
T ss_pred HHHHHHHHHHhcCcchheeeee-cccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence 4577777788999998888775 332222333332 22233577889999999998765 5566668899999999
Q ss_pred HhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHHHHHHHHHhcCcHH
Q 036338 283 LITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKTAQEAVSSSNVLT 362 (408)
Q Consensus 283 lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~~~~~~~~~~g~~~ 362 (408)
.+... +..-+..|.-++..+-.++.+-..+++.-.-.- -|..+++......++.|...
T Consensus 197 Ime~g---------------------SElSktvaifI~qkil~dDvGLqYiCqT~eRFy-Av~~vln~mv~qlVs~~~~R 254 (315)
T COG5209 197 IMELG---------------------SELSKTVAIFIFQKILGDDVGLQYICQTFERFY-AVNLVLNSMVSQLVSLGSTR 254 (315)
T ss_pred HHHhh---------------------hHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH-HHHHHHHHHHHHHhhccchh
Confidence 99753 566777888888888888888887776422111 22333444445556666655
Q ss_pred HHHHHH
Q 036338 363 KILLLM 368 (408)
Q Consensus 363 ~Ll~ll 368 (408)
.|-..+
T Consensus 255 LlKh~i 260 (315)
T COG5209 255 LLKHAI 260 (315)
T ss_pred HHHHHH
Confidence 554444
No 279
>PF14353 CpXC: CpXC protein
Probab=79.55 E-value=1 Score=37.33 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=29.5
Q ss_pred cccccCccccCCCceecCCCCcccHhhHHHHHhcCC---CCCCCccccc
Q 036338 13 FFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGN---NTCPATMQVL 58 (408)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~---~~CP~~~~~l 58 (408)
+.+||-|+..|.-.|-..-.-.....-.++-+. |. .+||.|+..+
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~-g~l~~~~CP~Cg~~~ 48 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILD-GSLFSFTCPSCGHKF 48 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHc-CCcCEEECCCCCCce
Confidence 368999999888877543333344455555554 43 5799999764
No 280
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=78.94 E-value=65 Score=35.41 Aligned_cols=180 Identities=22% Similarity=0.262 Sum_probs=104.2
Q ss_pred HHHhcCC-hhHHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHh
Q 036338 107 RVAISKN-EDFSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLIL 185 (408)
Q Consensus 107 ~~L~s~~-~~~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~ 185 (408)
..+.+.+ .++.+|+..+....++.. ........|.+-.++.....+....+.-.|+..|..++...... .+...
T Consensus 260 t~~~s~~WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~--~~~~~- 334 (815)
T KOG1820|consen 260 TEMLSKKWKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL--FRKYA- 334 (815)
T ss_pred HhhhccchHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh--hHHHH-
Confidence 3444444 458999999998887533 22222221444455555444444555567777777776522222 24443
Q ss_pred ccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc-C
Q 036338 186 KRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS-S 264 (408)
Q Consensus 186 ~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~-~ 264 (408)
.+..+.|+.-+..- -.+.+..+..++-..+.. ... ...++.+...++++ ++..+......+-.... .
T Consensus 335 ---~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns------~~l-~~~~~~I~e~lk~k-np~~k~~~~~~l~r~~~~~ 402 (815)
T KOG1820|consen 335 ---KNVFPSLLDRLKEK-KSELRDALLKALDAILNS------TPL-SKMSEAILEALKGK-NPQIKGECLLLLDRKLRKL 402 (815)
T ss_pred ---HhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhc------ccH-HHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHhhc
Confidence 36678888888776 667777766666655541 112 34678888889987 88877765555544333 3
Q ss_pred c-chHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHh
Q 036338 265 K-RAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILS 324 (408)
Q Consensus 265 ~-~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~ 324 (408)
+ .+-..-.-.+.+|.++....+ .+..++..|..++..+-
T Consensus 403 ~~~~~~~~t~~~l~p~~~~~~~D---------------------~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 403 GPKTVEKETVKTLVPHLIKHIND---------------------TDKDVRKAALEAVAAVM 442 (815)
T ss_pred CCcCcchhhHHHHhHHHhhhccC---------------------CcHHHHHHHHHHHHHHH
Confidence 2 111121223455666665543 37788877777776664
No 281
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=78.93 E-value=8.4 Score=32.60 Aligned_cols=73 Identities=12% Similarity=0.130 Sum_probs=59.6
Q ss_pred ccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc--hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccC
Q 036338 190 DCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD--SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSS 264 (408)
Q Consensus 190 g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~ 264 (408)
.++..|.+.|.++ ++.++..|..+|..+..+.. ....++. .+++..|++++....++.+++.++..+.+-+..
T Consensus 41 ~a~ral~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas-~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~ 115 (142)
T cd03569 41 YAMRALKKRLLSK-NPNVQLYALLLLESCVKNCGTHFHDEVAS-REFMDELKDLIKTTKNEEVRQKILELIQAWALA 115 (142)
T ss_pred HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHCCHHHHHHHhh-HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence 4466778888888 99999999999999988743 4555665 789999999998656889999999999887654
No 282
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=78.23 E-value=1.4 Score=48.50 Aligned_cols=47 Identities=17% Similarity=0.234 Sum_probs=37.0
Q ss_pred cccccCcccc-----CCCceec--CCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338 13 FFRCPISLDV-----MKSPVSL--CTGVTYDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 13 ~~~Cpi~~~~-----~~dPv~~--~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
.-.|.||++- .-+|.+. .||.-.||.|.+-=.++|+..||+|+..+.
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 3579999985 3347776 499999999996556778899999987754
No 283
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.22 E-value=1.9 Score=31.42 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=27.7
Q ss_pred CCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHH
Q 036338 31 TGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTL 69 (408)
Q Consensus 31 cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l 69 (408)
=-||||..|-+.-+. ..||.|+-.+.....+|.-.|
T Consensus 27 fEcTFCadCae~~l~---g~CPnCGGelv~RP~RPaa~L 62 (84)
T COG3813 27 FECTFCADCAENRLH---GLCPNCGGELVARPIRPAAKL 62 (84)
T ss_pred EeeehhHhHHHHhhc---CcCCCCCchhhcCcCChHHHH
Confidence 447999999887665 479999988877777775444
No 284
>PHA03096 p28-like protein; Provisional
Probab=77.26 E-value=1.4 Score=41.87 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=30.1
Q ss_pred ccccCccccCCC--------ceecCCCCcccHhhHHHHHhcC--CCCCCCccc
Q 036338 14 FRCPISLDVMKS--------PVSLCTGVTYDRASIQRWLDSG--NNTCPATMQ 56 (408)
Q Consensus 14 ~~Cpi~~~~~~d--------Pv~~~cgh~f~r~cI~~~~~~~--~~~CP~~~~ 56 (408)
-.|-||.+.-.+ -....|-|.||-.||..|-... ..+||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 458888876543 1223599999999999997653 345666654
No 285
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=77.16 E-value=13 Score=40.61 Aligned_cols=137 Identities=17% Similarity=0.213 Sum_probs=88.7
Q ss_pred ChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhc
Q 036338 142 GLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAG 220 (408)
Q Consensus 142 G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~ 220 (408)
..+|.|++...+.. +.+ ..=+.+|.+... .-+ +..+.-+-...+|.|++-|.-. +..+|..+..+|.-+..
T Consensus 867 ~ivP~l~~~~~t~~~~~K--~~yl~~LshVl~---~vP--~~vllp~~~~LlPLLLq~Ls~~-D~~v~vstl~~i~~~l~ 938 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGSQK--HNYLEALSHVLT---NVP--KQVLLPQFPMLLPLLLQALSMP-DVIVRVSTLRTIPMLLT 938 (1030)
T ss_pred hhHHHHHHHhccCCccch--hHHHHHHHHHHh---cCC--HHhhccchhhHHHHHHHhcCCC-ccchhhhHhhhhhHHHH
Confidence 56888888887444 444 444455555443 222 3334322346688888888888 99999999999886654
Q ss_pred CcchhhHHhhhcChHHHHHHhcccCCC--HHHHHHHHHHHHHhcc-CcchHHHHHhcCcHHHHHHHhccC
Q 036338 221 DADSKVKIAERDGLLAETVKSLSLDSD--RRLIEASLSCLITISS-SKRAKTKLINHKLITELGKLITDG 287 (408)
Q Consensus 221 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~--~~~~~~A~~aL~~Ls~-~~~n~~~~~~~G~i~~Lv~lL~~~ 287 (408)
..+.-..--. .-.+|.|..+=++.++ ..+++.|+.+|..|.. .+.++-.--+..+|.+|...|+++
T Consensus 939 ~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk 1007 (1030)
T KOG1967|consen 939 ESETLQTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK 1007 (1030)
T ss_pred hccccchHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH
Confidence 4332111111 2357777776666532 6799999999999998 444444444667888899999764
No 286
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.73 E-value=1.5 Score=40.73 Aligned_cols=43 Identities=7% Similarity=0.183 Sum_probs=33.3
Q ss_pred CCcccccCccccCCCceecCC----CCcccHhhHHHHHhcC----CCCCCC
Q 036338 11 PSFFRCPISLDVMKSPVSLCT----GVTYDRASIQRWLDSG----NNTCPA 53 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~c----gh~f~r~cI~~~~~~~----~~~CP~ 53 (408)
-..++|-+|++-+.|.-.+.| +|.||--|=.+.++.. .-+||.
T Consensus 266 ~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPS 316 (352)
T KOG3579|consen 266 SAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPS 316 (352)
T ss_pred CCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCC
Confidence 345899999999999877655 6999999988887752 335665
No 287
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=76.19 E-value=0.99 Score=30.14 Aligned_cols=37 Identities=11% Similarity=0.113 Sum_probs=22.5
Q ss_pred CCCceecCC-CCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 23 MKSPVSLCT-GVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 23 ~~dPv~~~c-gh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
|.+--.+.| .|..|..|+...+.. +..||+|+++++.
T Consensus 10 f~~k~Li~C~dHYLCl~CLt~ml~~-s~~C~iC~~~LPt 47 (50)
T PF03854_consen 10 FANKGLIKCSDHYLCLNCLTLMLSR-SDRCPICGKPLPT 47 (50)
T ss_dssp S--SSEEE-SS-EEEHHHHHHT-SS-SSEETTTTEE---
T ss_pred hcCCCeeeecchhHHHHHHHHHhcc-ccCCCcccCcCcc
Confidence 444445554 499999999988874 5569999998753
No 288
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=76.05 E-value=70 Score=33.90 Aligned_cols=134 Identities=13% Similarity=0.096 Sum_probs=76.8
Q ss_pred ccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc--Ccch
Q 036338 190 DCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS--SKRA 267 (408)
Q Consensus 190 g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~--~~~n 267 (408)
..+..++..+. + ++..+.-+++.|.|+-.++.++..+.....-+...+.-.+...+..++.+-+....|++. ...+
T Consensus 589 ~~~~~li~~~~-~-~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~ 666 (745)
T KOG0301|consen 589 NLVGTLIPILN-A-DPANQLLVVRCLANLFSNPAGRELFMSRLESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDN 666 (745)
T ss_pred HHHHhhhcccc-c-chhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcc
Confidence 35556666555 4 677788899999999888777776654322222222222333234455555555555543 2222
Q ss_pred HHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHH
Q 036338 268 KTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQK 346 (408)
Q Consensus 268 ~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~ 346 (408)
-+ .|+.+.|..++..- -+ ...+.+..-.++.+|.+|+..+.+..++... -.+..+++.
T Consensus 667 ~~----~~~~~~l~~ai~~~---~e-------------~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~~-~~v~sia~~ 724 (745)
T KOG0301|consen 667 EQ----LEGKEVLLSAISTL---LE-------------PVDDLEAIYRLLVALGTLMTVDASVIQLAKN-RSVDSIAKK 724 (745)
T ss_pred cc----cchHHHHHHHHHhh---cc-------------cchhHHHHHHHHHHHHhhccccHHHHHHHHh-cCHHHHHHH
Confidence 21 45666666655431 00 0223456667788888888877788777764 456666664
No 289
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=75.90 E-value=1.1e+02 Score=32.19 Aligned_cols=87 Identities=15% Similarity=0.248 Sum_probs=63.3
Q ss_pred cccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc---C
Q 036338 189 QDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS---S 264 (408)
Q Consensus 189 ~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~---~ 264 (408)
.|.+..+++-+.+. +..+|.+.+.+|..+...- +--+.+. .|.+..|.+-+-+- .+.++..|+.+|..+-. +
T Consensus 90 ~~~~~h~lRg~esk-dk~VR~r~lqila~~~d~v~eIDe~l~--N~L~ekl~~R~~DR-E~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 90 AGTFYHLLRGTESK-DKKVRKRSLQILALLSDVVREIDEVLA--NGLLEKLSERLFDR-EKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred HHHHHHHHhcccCc-chhHHHHHHHHHHHHHHhcchHHHHHH--HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhccCC
Confidence 47788888888888 8999999999999888653 2233333 57788888877765 77899999999987643 4
Q ss_pred cchHHHHHhcCcHHHHHHHhcc
Q 036338 265 KRAKTKLINHKLITELGKLITD 286 (408)
Q Consensus 265 ~~n~~~~~~~G~i~~Lv~lL~~ 286 (408)
++|+. +..|+.+++.
T Consensus 166 een~~-------~n~l~~~vqn 180 (885)
T COG5218 166 EENRI-------VNLLKDIVQN 180 (885)
T ss_pred hHHHH-------HHHHHHHHhc
Confidence 44443 3467777876
No 290
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=75.89 E-value=82 Score=30.78 Aligned_cols=192 Identities=11% Similarity=0.125 Sum_probs=120.5
Q ss_pred HHHHHHHhcCChh-HHHHHHHHHHHhhhChhh-----hhhhhhc-CChHHHHHHHhhcCcchhhHHHHHHHHHHhccccc
Q 036338 103 KDIIRVAISKNED-FSENLTKIVAFAKESDEN-----KTFLAKF-DGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIE 175 (408)
Q Consensus 103 ~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~-----r~~i~~~-~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~ 175 (408)
..|+..|..-+-+ +..+......+....... ...+... +.++..|+.--+.+ ...-.+-..|..+.. +
T Consensus 79 ~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~---dial~~g~mlRec~k--~ 153 (335)
T PF08569_consen 79 YLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENP---DIALNCGDMLRECIK--H 153 (335)
T ss_dssp HHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGST---TTHHHHHHHHHHHTT--S
T ss_pred HHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCc---cccchHHHHHHHHHh--h
Confidence 3444444444545 666666666665443222 3345544 34444444333322 233455567777765 3
Q ss_pred chHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHh-hcCcchh-hHHhh-hcChHHHHHHhcccCCCHHHHH
Q 036338 176 DQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFI-AGDADSK-VKIAE-RDGLLAETVKSLSLDSDRRLIE 252 (408)
Q Consensus 176 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~L-a~~~~~~-~~i~~-~~g~i~~Lv~lL~~~~~~~~~~ 252 (408)
+ . +-+.|. ....+..+.+....+ +-++-..|...+..+ ..+.... ..+.. -..++....++|.++ +--.++
T Consensus 154 e-~-l~~~iL--~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtkr 227 (335)
T PF08569_consen 154 E-S-LAKIIL--YSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTKR 227 (335)
T ss_dssp H-H-HHHHHH--TSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHHH
T ss_pred H-H-HHHHHh--CcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEeeh
Confidence 3 2 244555 778899999999988 999999999999975 4444332 22222 234677888899887 889999
Q ss_pred HHHHHHHHhccCcchHHHHH----hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338 253 ASLSCLITISSSKRAKTKLI----NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT 326 (408)
Q Consensus 253 ~A~~aL~~Ls~~~~n~~~~~----~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~ 326 (408)
.++..|..|-....|...|. +..-+..+..+|+++ +..++-.|--+..-...+
T Consensus 228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~---------------------sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK---------------------SKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S----------------------HHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc---------------------chhhhHHHHHHHHHHHhC
Confidence 99999999999888766554 456677778888764 778999998888776543
No 291
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=75.83 E-value=1.5 Score=25.52 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=12.6
Q ss_pred cccCccccCCCceec-C-CCCccc
Q 036338 15 RCPISLDVMKSPVSL-C-TGVTYD 36 (408)
Q Consensus 15 ~Cpi~~~~~~dPv~~-~-cgh~f~ 36 (408)
.||-|......-... + |||.|.
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDFE 25 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCCc
Confidence 477777766444333 2 666663
No 292
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=75.75 E-value=29 Score=27.37 Aligned_cols=79 Identities=19% Similarity=0.187 Sum_probs=55.7
Q ss_pred HHHHHHHHHHH-HhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHh
Q 036338 206 DSRIESLRLLE-FIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLI 284 (408)
Q Consensus 206 ~~~~~Aa~~L~-~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL 284 (408)
++|..|..-|. .+-..--....+....+.+..|+...... +....+.++..|..|..++.....+.+-|++..|-++-
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~-~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr 80 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFP-PVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLR 80 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCC-CCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHH
Confidence 45665544333 44443333344444466778888888776 55688999999999999999899999999999966655
Q ss_pred c
Q 036338 285 T 285 (408)
Q Consensus 285 ~ 285 (408)
.
T Consensus 81 ~ 81 (98)
T PF14726_consen 81 P 81 (98)
T ss_pred h
Confidence 3
No 293
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=75.32 E-value=1.4 Score=42.89 Aligned_cols=44 Identities=16% Similarity=0.357 Sum_probs=34.7
Q ss_pred cccccCccccCC--Cce--ecCCCCcccHhhHHHHHhc-CCCCCCCccc
Q 036338 13 FFRCPISLDVMK--SPV--SLCTGVTYDRASIQRWLDS-GNNTCPATMQ 56 (408)
Q Consensus 13 ~~~Cpi~~~~~~--dPv--~~~cgh~f~r~cI~~~~~~-~~~~CP~~~~ 56 (408)
++.|-.|++.+- |-- -+||.|.|--+|+.+++.+ +..+||.|++
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 467999998763 322 3689999999999999865 4578999983
No 294
>PHA02862 5L protein; Provisional
Probab=75.25 E-value=2.9 Score=35.08 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=37.3
Q ss_pred cccCccccCCCceecCCCCc-----ccHhhHHHHHhc-CCCCCCCcccccCCCCCcccHHHHHHHHHHHH
Q 036338 15 RCPISLDVMKSPVSLCTGVT-----YDRASIQRWLDS-GNNTCPATMQVLQSKEFVPNRTLQRLIQIWSD 78 (408)
Q Consensus 15 ~Cpi~~~~~~dPv~~~cgh~-----f~r~cI~~~~~~-~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~ 78 (408)
.|=||.+-=.+.+ -||.-+ .=++|+++|+.. ++..||.|+.++.-+.. .+-..+|.-
T Consensus 4 iCWIC~~~~~e~~-~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~------yKpf~kW~~ 66 (156)
T PHA02862 4 ICWICNDVCDERN-NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKT------YVSFKKWNW 66 (156)
T ss_pred EEEEecCcCCCCc-ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEc------cccHHHhhc
Confidence 5888988765553 455422 238999999975 45679999988754321 112567864
No 295
>PRK14707 hypothetical protein; Provisional
Probab=75.11 E-value=2.1e+02 Score=35.01 Aligned_cols=216 Identities=13% Similarity=0.094 Sum_probs=119.4
Q ss_pred HHHHHHHHHhcC--ChhHHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH
Q 036338 101 EVKDIIRVAISK--NEDFSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ 178 (408)
Q Consensus 101 ~i~~Lv~~L~s~--~~~~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~ 178 (408)
.+..++.-++.. +.+...++..|.......+..+..+-. -+|..+++-++.-.+...++.|+..|..... +++.
T Consensus 164 ~~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~~~--q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~--~~~~ 239 (2710)
T PRK14707 164 NISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAMDA--QGVATVLNALCKWPDTPDCGNAVSALAERLA--DESR 239 (2710)
T ss_pred cHHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhcccch--HHHHHHHHHHhcCCCChhHHHHHHHHHHHHc--CcHH
Confidence 344444444322 334666777776666555667766643 5677777777665533345777777776543 3433
Q ss_pred HHHHHHhccCcccHHHHHHHHhc-CCChHHHHHHHHHHH-HhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338 179 HLMNLILKRDQDCLNSLLLVLKQ-QESVDSRIESLRLLE-FIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS 256 (408)
Q Consensus 179 ~~~~~i~~~~~g~i~~Lv~lL~~-~~~~~~~~~Aa~~L~-~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~ 256 (408)
.+..+ +.-.|-..+..|.. . +.....+|+..|. .++.+..-+..+.. .++--.|-.+-+.. +..+-+.|+.
T Consensus 240 -l~~~~---~~q~va~~lN~lsKwp-~~~~C~~a~~~lA~rl~~~~~l~~al~~-q~vanalNalSKwp-d~~vc~~Aa~ 312 (2710)
T PRK14707 240 -LRNEL---KPQELGNALNALSKWA-DTPVCAAAASALAERLVDDPGLRKALDP-INVTQALNALSKWA-DLPVCAEAAI 312 (2710)
T ss_pred -HHHhC---ChHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhhhHHHHHhcCH-HHHHHHHhhhhcCC-CchHHHHHHH
Confidence 34544 45555555555554 4 6666666666665 67766666666654 33334444444555 4444444444
Q ss_pred HHH-HhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHh
Q 036338 257 CLI-TISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQ 335 (408)
Q Consensus 257 aL~-~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 335 (408)
+|. .|....+-+..+=..|+-..|=.|-.++ +.....+.|...-..|+.+++-+..+-.
T Consensus 313 ~la~rl~~d~~l~~~~~~~~~~~~LNalsKWp--------------------d~~~C~~Aa~~LA~rl~~d~~l~~~l~~ 372 (2710)
T PRK14707 313 ALAERLADDPELCKALNARGLSTALNALSKWP--------------------DNPVCAAAVSALAERLVADPELRKDLEP 372 (2710)
T ss_pred HHHHHHhccHhhhhccchHHHHHHHHHhhcCC--------------------CchhHHHHHHHHHHHhccCHhhhcccch
Confidence 444 5666555554443344444444444554 2334444455555567777777776643
Q ss_pred hcCchHHHHHHHHH
Q 036338 336 DAALLNGVVQKMLK 349 (408)
Q Consensus 336 ~~g~i~~lv~~l~~ 349 (408)
-++..+++.|.+
T Consensus 373 --q~~a~~lNalsK 384 (2710)
T PRK14707 373 --QGVSSVLNALSK 384 (2710)
T ss_pred --hHHHHHHhhhhc
Confidence 456667776655
No 296
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=74.78 E-value=16 Score=31.01 Aligned_cols=92 Identities=16% Similarity=0.253 Sum_probs=68.0
Q ss_pred ccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc--hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcch
Q 036338 190 DCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD--SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRA 267 (408)
Q Consensus 190 g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n 267 (408)
.++..|.+.|.++ ++.++..|..+|..+..+.. ....|+. ..++..|++++....++.+++..+..|...+....+
T Consensus 37 ~a~ral~KRl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evas-k~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~ 114 (144)
T cd03568 37 DCLKAIMKRLNHK-DPNVQLRALTLLDACAENCGKRFHQEVAS-RDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKN 114 (144)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHhh-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence 3466777888888 99999999999999998764 4556665 789999999998855889999999999887654332
Q ss_pred HHHHHhcCcHHHHHHHhcc
Q 036338 268 KTKLINHKLITELGKLITD 286 (408)
Q Consensus 268 ~~~~~~~G~i~~Lv~lL~~ 286 (408)
.. +.+.|..+...|..
T Consensus 115 ~~---~l~~i~~~y~~L~~ 130 (144)
T cd03568 115 DP---SLSLMSDLYKKLKN 130 (144)
T ss_pred Cc---ccHHHHHHHHHHHH
Confidence 11 22344555555543
No 297
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=74.77 E-value=3.2 Score=33.10 Aligned_cols=54 Identities=19% Similarity=0.393 Sum_probs=32.5
Q ss_pred CCCCcccccCccccCCCceecC-CC-----CcccHhhHHHHHhcCCCCCCCcccccCCCCC
Q 036338 9 TVPSFFRCPISLDVMKSPVSLC-TG-----VTYDRASIQRWLDSGNNTCPATMQVLQSKEF 63 (408)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~~-cg-----h~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l 63 (408)
-.++.++|||++++-.+=|.+. .+ .-|++.++.+.+..|. .-|.+|++++...+
T Consensus 36 C~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~~-~HPLSREpit~sMI 95 (113)
T PF06416_consen 36 CPEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREGA-PHPLSREPITPSMI 95 (113)
T ss_dssp S-CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT----TTT-----TTTE
T ss_pred CCHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcCC-CCCCccCCCChhhE
Confidence 4567789999999999988764 22 4589999999988654 47999998876543
No 298
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=74.59 E-value=51 Score=37.36 Aligned_cols=194 Identities=16% Similarity=0.173 Sum_probs=108.5
Q ss_pred HHHHHHHHhcCChh-HHHHHHHHHHHh---hh-ChhhhhhhhhcCChHHHHHHHhhcCc--chhhHHHHHHHHHHhccc-
Q 036338 102 VKDIIRVAISKNED-FSENLTKIVAFA---KE-SDENKTFLAKFDGLVVMLVEILSNVN--DVNMLKQVIRVLDLILNK- 173 (408)
Q Consensus 102 i~~Lv~~L~s~~~~-~~~Al~~L~~la---~~-~~~~r~~i~~~~G~i~~Lv~lL~s~~--~~~~~e~A~~~L~~L~~~- 173 (408)
++.+|..+..+..+ |..|+..|..+. ++ .+.+-..+.+. ..|.|-.++.+.. .+++ .-+..|..|+..
T Consensus 464 lPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eY--lfP~L~~l~~d~~~~~vRi--ayAsnla~LA~tA 539 (1431)
T KOG1240|consen 464 LPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEY--LFPHLNHLLNDSSAQIVRI--AYASNLAQLAKTA 539 (1431)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhh--hhhhhHhhhccCccceehh--hHHhhHHHHHHHH
Confidence 45666677766666 888888776664 22 23333445553 6788888887633 2221 111111111110
Q ss_pred ---------------ccchH-----------HHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhH
Q 036338 174 ---------------IEDQQ-----------HLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVK 227 (408)
Q Consensus 174 ---------------~~~~~-----------~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~ 227 (408)
.++.+ ..++++ .++=..++.+|... +.-+|..-...|.-||..-. |+
T Consensus 540 ~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~----~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFG-k~- 612 (1431)
T KOG1240|consen 540 YRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALH----HTVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFG-KE- 612 (1431)
T ss_pred HHHHHHHHHHHhcccccCcccccccccccchHHHHHH----HHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhh-hc-
Confidence 00100 001111 12223344555555 66778766666777664321 11
Q ss_pred HhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCC
Q 036338 228 IAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGN 307 (408)
Q Consensus 228 i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~ 307 (408)
....=.++.|+.+|.+. |..++-+--.-|.-+|..-. .+-++.+.+|.|.+-|.++
T Consensus 613 -ksND~iLshLiTfLNDk-Dw~LR~aFfdsI~gvsi~VG--~rs~seyllPLl~Q~ltD~-------------------- 668 (1431)
T KOG1240|consen 613 -KSNDVILSHLITFLNDK-DWRLRGAFFDSIVGVSIFVG--WRSVSEYLLPLLQQGLTDG-------------------- 668 (1431)
T ss_pred -ccccchHHHHHHHhcCc-cHHHHHHHHhhccceEEEEe--eeeHHHHHHHHHHHhccCc--------------------
Confidence 11123578899999886 87777665555555554322 2335677889998888754
Q ss_pred CCcchHHHHHHHHHHHhCCHHHHH
Q 036338 308 GTVLITEKALRLVEILSTTKQGRM 331 (408)
Q Consensus 308 ~~~~~~~~a~~~L~~L~~~~~~~~ 331 (408)
.+.+...|++.|..|....--|+
T Consensus 669 -EE~Viv~aL~~ls~Lik~~ll~K 691 (1431)
T KOG1240|consen 669 -EEAVIVSALGSLSILIKLGLLRK 691 (1431)
T ss_pred -chhhHHHHHHHHHHHHHhcccch
Confidence 78999999999999987543333
No 299
>KOG1086 consensus Cytosolic sorting protein/ADP-ribosylation factor effector GGA [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.38 E-value=58 Score=32.63 Aligned_cols=123 Identities=15% Similarity=0.173 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcCChh-HHHHHHHHHHHhhh-ChhhhhhhhhcCChHHHHHHHhhcCc-----chhhHHHHHHHHHHhccc
Q 036338 101 EVKDIIRVAISKNED-FSENLTKIVAFAKE-SDENKTFLAKFDGLVVMLVEILSNVN-----DVNMLKQVIRVLDLILNK 173 (408)
Q Consensus 101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~-~~~~r~~i~~~~G~i~~Lv~lL~s~~-----~~~~~e~A~~~L~~L~~~ 173 (408)
.++.|-..++|.... ...|+..|..+.+. .+...+.+.+. -.+.-|++++.-.. +.++.-..+.+|+.-..+
T Consensus 46 Av~LlaHKiqSPqe~EAl~altvLe~cmkncGekfH~evgkf-rFLNELIkvvsPKYlG~~tSekvKtkiIelLfsWtv~ 124 (594)
T KOG1086|consen 46 AVRLLAHKIQSPQEWEALQALTVLEYCMKNCGEKFHEEVGKF-RFLNELIKVVSPKYLGSRTSEKVKTKIIELLFSWTVS 124 (594)
T ss_pred HHHHHHhhcCChhHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHHHhCchhcchhhhHHHHHHHHHHHhhheec
Confidence 455566677776554 66777777776654 34455566666 67777888875433 334446667777654433
Q ss_pred ccchHHHHHHHhc-cCcccH-------------------------------HHHHHHHhcCCChHHHHHHHHHHHHhhcC
Q 036338 174 IEDQQHLMNLILK-RDQDCL-------------------------------NSLLLVLKQQESVDSRIESLRLLEFIAGD 221 (408)
Q Consensus 174 ~~~~~~~~~~i~~-~~~g~i-------------------------------~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~ 221 (408)
+.++..++++-.| ...|+| ..|.++|++. +++..+.|-.+|.+|...
T Consensus 125 lpe~~KikdaYqmLKkqgIik~DP~lp~d~~~~p~ppP~pkssvFddEEksklL~rLLkSn-~PeDLqaANkLIK~lVke 203 (594)
T KOG1086|consen 125 LPEEPKIKDAYQMLKKQGIIKSDPKLPVDETPVPAPPPRPKSSVFDDEEKSKLLARLLKSN-HPEDLQAANKLIKTLVKE 203 (594)
T ss_pred CcccchHHHHHHHHHhcCcccCCCCCCCCCccCCCCCCCCCccccCcHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHH
Confidence 3333332222111 023333 4577888888 899999999999999877
Q ss_pred cchh
Q 036338 222 ADSK 225 (408)
Q Consensus 222 ~~~~ 225 (408)
++.|
T Consensus 204 ee~k 207 (594)
T KOG1086|consen 204 EEHK 207 (594)
T ss_pred HHHH
Confidence 6544
No 300
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=74.33 E-value=20 Score=30.25 Aligned_cols=72 Identities=10% Similarity=0.147 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhC-hhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKES-DENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLIL 171 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~-~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~ 171 (408)
.+.++.|.++|+++++. +..|+..|..+++.. ......+.+. +.+..|+.++....+.++.+.++..+..-+
T Consensus 40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~-~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASR-EFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhH-HHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 67899999999999887 999999999998874 5567778887 999999999976445556688888776654
No 301
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=73.98 E-value=3.4 Score=35.33 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=33.7
Q ss_pred CcccccCccccCCCceecCCC--Cc---ccHhhHHHHHhcC-CCCCCCcccccCC
Q 036338 12 SFFRCPISLDVMKSPVSLCTG--VT---YDRASIQRWLDSG-NNTCPATMQVLQS 60 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~cg--h~---f~r~cI~~~~~~~-~~~CP~~~~~l~~ 60 (408)
.+..|=||.+--. +..-||. .+ .=++|+++|+..+ ...||.|+.++.-
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 3457999988754 4445654 32 2589999999864 5679999987643
No 302
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=73.84 E-value=36 Score=35.55 Aligned_cols=134 Identities=14% Similarity=0.161 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH
Q 036338 99 QDEVKDIIRVAISKNEDFSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ 178 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~ 178 (408)
.+....++...+++...+.-|+.-|....+.-|...+. +|..+++|....+ ..+...|+..|-.+|. ++.+
T Consensus 22 ~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~------Ai~a~~DLcEDed-~~iR~~aik~lp~~ck--~~~~ 92 (556)
T PF05918_consen 22 EEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEE------AINAQLDLCEDED-VQIRKQAIKGLPQLCK--DNPE 92 (556)
T ss_dssp HHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHH------HHHHHHHHHT-SS-HHHHHHHHHHGGGG----T--T
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHH------HHHHHHHHHhccc-HHHHHHHHHhHHHHHH--hHHH
Confidence 45666677766654333777888888888877776544 4555889888766 3344899999999987 3322
Q ss_pred HHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcc---cCCCHHHHHHHH
Q 036338 179 HLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLS---LDSDRRLIEASL 255 (408)
Q Consensus 179 ~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~---~~~~~~~~~~A~ 255 (408)
.+ ..++..|+.+|.+. +......+-.+|..|-..+ . .+.+..|..-+. .+ +..+++.++
T Consensus 93 ----~v----~kvaDvL~QlL~td-d~~E~~~v~~sL~~ll~~d-~-------k~tL~~lf~~i~~~~~~-de~~Re~~l 154 (556)
T PF05918_consen 93 ----HV----SKVADVLVQLLQTD-DPVELDAVKNSLMSLLKQD-P-------KGTLTGLFSQIESSKSG-DEQVRERAL 154 (556)
T ss_dssp -----H----HHHHHHHHHHTT----HHHHHHHHHHHHHHHHH--H-------HHHHHHHHHHHH---HS--HHHHHHHH
T ss_pred ----HH----hHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHhcC-c-------HHHHHHHHHHHHhcccC-chHHHHHHH
Confidence 22 23467788888877 6666666666666554332 1 233344444443 44 667888888
Q ss_pred HHHH
Q 036338 256 SCLI 259 (408)
Q Consensus 256 ~aL~ 259 (408)
..|.
T Consensus 155 kFl~ 158 (556)
T PF05918_consen 155 KFLR 158 (556)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8775
No 303
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=73.43 E-value=1.2e+02 Score=31.70 Aligned_cols=148 Identities=9% Similarity=0.025 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHhcCCh-----h---HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc---chhhHHHHHHHH
Q 036338 99 QDEVKDIIRVAISKNE-----D---FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN---DVNMLKQVIRVL 167 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~-----~---~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~---~~~~~e~A~~~L 167 (408)
.+.+|.|+++|...++ + ...|..+|...+.-. .- -.+.+++.+....- +-.-.|.|+.++
T Consensus 320 ~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~--------gd-~i~~pVl~FvEqni~~~~w~nreaavmAf 390 (858)
T COG5215 320 ADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK--------GD-KIMRPVLGFVEQNIRSESWANREAAVMAF 390 (858)
T ss_pred HHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh--------hh-HhHHHHHHHHHHhccCchhhhHHHHHHHh
Confidence 5678889998876321 1 345556666555321 11 33444555554322 112238888899
Q ss_pred HHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccC--
Q 036338 168 DLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLD-- 245 (408)
Q Consensus 168 ~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~-- 245 (408)
+.... +......-.++ +.++|.+......+ ..-++..+||+++.++.+- ...| .-.|-+++.+.-+.-|
T Consensus 391 GSvm~--gp~~~~lT~~V---~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~v--a~~i-~p~~Hl~~~vsa~liGl~ 461 (858)
T COG5215 391 GSVMH--GPCEDCLTKIV---PQALPGIENEMSDS-CLWVKSTTAWCFGAIADHV--AMII-SPCGHLVLEVSASLIGLM 461 (858)
T ss_pred hhhhc--CccHHHHHhhH---HhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHH--HHhc-CccccccHHHHHHHhhhh
Confidence 88764 22222233342 57788888887776 8889999999999998542 1112 1123333333322211
Q ss_pred CCHHHHHHHHHHHHHhccC
Q 036338 246 SDRRLIEASLSCLITISSS 264 (408)
Q Consensus 246 ~~~~~~~~A~~aL~~Ls~~ 264 (408)
+.+....+..|+.-||..+
T Consensus 462 D~p~~~~ncsw~~~nlv~h 480 (858)
T COG5215 462 DCPFRSINCSWRKENLVDH 480 (858)
T ss_pred ccchHHhhhHHHHHhHHHh
Confidence 2567777888888888654
No 304
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=73.10 E-value=32 Score=36.82 Aligned_cols=63 Identities=17% Similarity=0.072 Sum_probs=46.9
Q ss_pred cHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 036338 191 CLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITI 261 (408)
Q Consensus 191 ~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~L 261 (408)
.++..|.+|...-+..+|..||.+|+-.|....+++.|.. ++||+. +. ..-+|+.|+-++.-+
T Consensus 589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~l----Lepl~~---D~-~~fVRQgAlIa~amI 651 (929)
T KOG2062|consen 589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINL----LEPLTS---DP-VDFVRQGALIALAMI 651 (929)
T ss_pred hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHH----Hhhhhc---Ch-HHHHHHHHHHHHHHH
Confidence 3566777887544899999999999999988888887753 666665 44 446888887777654
No 305
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=72.94 E-value=2.6 Score=41.32 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=24.7
Q ss_pred cCCCCccc-----HhhHHHHHhc------------CCCCCCCcccccCCCC
Q 036338 29 LCTGVTYD-----RASIQRWLDS------------GNNTCPATMQVLQSKE 62 (408)
Q Consensus 29 ~~cgh~f~-----r~cI~~~~~~------------~~~~CP~~~~~l~~~~ 62 (408)
-+|+.-|| -+|+-+||.. +...||.||.+|.-.|
T Consensus 304 ~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 304 PPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred CCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 35667776 5899999953 2347999999886544
No 306
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.43 E-value=2e+02 Score=33.81 Aligned_cols=197 Identities=14% Similarity=0.064 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHhhhC-hhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHH
Q 036338 116 FSENLTKIVAFAKES-DENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNS 194 (408)
Q Consensus 116 ~~~Al~~L~~la~~~-~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~ 194 (408)
+..|+..+..++++. ++.+..+.+ .||.|.+.=.+++ . .+..|..-++|... .|. +..+--.-..++.-
T Consensus 974 k~GaAfGf~~i~~~a~~kl~p~l~k---LIPrLyRY~yDP~-~-~Vq~aM~sIW~~Li--~D~---k~~vd~y~neIl~e 1043 (1702)
T KOG0915|consen 974 KKGAAFGFGAIAKQAGEKLEPYLKK---LIPRLYRYQYDPD-K-KVQDAMTSIWNALI--TDS---KKVVDEYLNEILDE 1043 (1702)
T ss_pred ccchhhchHHHHHHHHHhhhhHHHH---hhHHHhhhccCCc-H-HHHHHHHHHHHHhc--cCh---HHHHHHHHHHHHHH
Confidence 556666677776543 222333332 3666666655555 2 23556666666443 242 22221001244566
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHh---cc----C-cc
Q 036338 195 LLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITI---SS----S-KR 266 (408)
Q Consensus 195 Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~L---s~----~-~~ 266 (408)
|+.-|.+. -..+|+.++.+|..|-...+.-...-.-......+.+...+ ....+|++|-++...| |- . ..
T Consensus 1044 LL~~lt~k-ewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDD-IKEsVR~aa~~~~~~lsKl~vr~~d~~~~ 1121 (1702)
T KOG0915|consen 1044 LLVNLTSK-EWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDD-IKESVREAADKAARALSKLCVRICDVTNG 1121 (1702)
T ss_pred HHHhccch-hHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcccCCc
Confidence 66666666 78899999999999998766544443322344445555544 2345666665554444 31 1 11
Q ss_pred hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhh-cCchHHHHH
Q 036338 267 AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQD-AALLNGVVQ 345 (408)
Q Consensus 267 n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~-~g~i~~lv~ 345 (408)
.+.+-+-+-++|.|++ + |.. +.-..+...+..++..|+.+... ++.-+ +..||.|++
T Consensus 1122 ~~~~~~l~~iLPfLl~----~--------------gim--s~v~evr~~si~tl~dl~Kssg~--~lkP~~~~LIp~ll~ 1179 (1702)
T KOG0915|consen 1122 AKGKEALDIILPFLLD----E--------------GIM--SKVNEVRRFSIGTLMDLAKSSGK--ELKPHFPKLIPLLLN 1179 (1702)
T ss_pred ccHHHHHHHHHHHHhc----c--------------Ccc--cchHHHHHHHHHHHHHHHHhchh--hhcchhhHHHHHHHH
Confidence 2222222335555553 1 000 22568888899999999875433 22211 245565555
Q ss_pred H
Q 036338 346 K 346 (408)
Q Consensus 346 ~ 346 (408)
.
T Consensus 1180 ~ 1180 (1702)
T KOG0915|consen 1180 A 1180 (1702)
T ss_pred H
Confidence 3
No 307
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=72.26 E-value=1e+02 Score=32.41 Aligned_cols=78 Identities=14% Similarity=0.032 Sum_probs=44.4
Q ss_pred cHHHHHHHHhc----CCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcc-c-CCCHHHHHHHHHHHHHhccC
Q 036338 191 CLNSLLLVLKQ----QESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLS-L-DSDRRLIEASLSCLITISSS 264 (408)
Q Consensus 191 ~i~~Lv~lL~~----~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~-~-~~~~~~~~~A~~aL~~Ls~~ 264 (408)
.++.|...|.. + +.+.+.-...+|+|+. . ...++.|..++. + ..+..++.+|++||+.++..
T Consensus 443 ~~~~l~~~l~~~~~~~-~~~~~~~~LkaLGN~g----------~-~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~ 510 (574)
T smart00638 443 LLKYLHELLQQAVSKG-DEEEIQLYLKALGNAG----------H-PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKR 510 (574)
T ss_pred HHHHHHHHHHHHHhcC-CchheeeHHHhhhccC----------C-hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 44555554432 2 3334444555555543 2 334566666665 2 23568999999999988753
Q ss_pred cchHHHHHhcCcHHHHHHHhccC
Q 036338 265 KRAKTKLINHKLITELGKLITDG 287 (408)
Q Consensus 265 ~~n~~~~~~~G~i~~Lv~lL~~~ 287 (408)
... -+-+.|+.++.+.
T Consensus 511 ~p~-------~v~~~l~~i~~n~ 526 (574)
T smart00638 511 DPR-------KVQEVLLPIYLNR 526 (574)
T ss_pred Cch-------HHHHHHHHHHcCC
Confidence 322 1335677777654
No 308
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=72.08 E-value=21 Score=30.38 Aligned_cols=100 Identities=12% Similarity=0.078 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc--chhhHHHHHHHHHHhccccc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN--DVNMLKQVIRVLDLILNKIE 175 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~--~~~~~e~A~~~L~~L~~~~~ 175 (408)
..+...|++.|+.+... ....+.-|.+-..-. -.-..-+++ +. |-.+.+... ..-....|+..|+.+.
T Consensus 21 a~Qt~~lielLk~~~~~~~~~lldLL~~RV~PG-VD~AA~VKA-~F---L~~ia~g~~~~~~Is~~~Av~LLGtM~---- 91 (154)
T PF11791_consen 21 AEQTAELIELLKNPPAGEEAFLLDLLTNRVPPG-VDEAAYVKA-EF---LAAIAKGEISSPLISPAEAVELLGTML---- 91 (154)
T ss_dssp HHHHHHHHHHHHS--TT-HHHHHHHHHHSS--T-T-HHHHHHH-HH---HHHHHTTSS-BTTB-HHHHHHHHTTS-----
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHhcCCCC-CChHHHHHH-HH---HHHHHcCCccCCCcCHHHHHHHHhhcc----
Confidence 88999999999987543 333444333332110 001112222 21 222222221 1111244444443321
Q ss_pred chHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhc
Q 036338 176 DQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAG 220 (408)
Q Consensus 176 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~ 220 (408)
..--|.+|+++|.+. +.+....|+.+|.+--.
T Consensus 92 ------------GGYNV~~LI~~L~~~-d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 92 ------------GGYNVQPLIDLLKSD-DEELAEEAAEALKNTLL 123 (154)
T ss_dssp ------------SSTTHHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred ------------CCCcHHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence 222388999999888 88999999999986543
No 309
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.87 E-value=23 Score=37.70 Aligned_cols=81 Identities=15% Similarity=0.167 Sum_probs=60.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc-CcchHHHH
Q 036338 193 NSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS-SKRAKTKL 271 (408)
Q Consensus 193 ~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~-~~~n~~~~ 271 (408)
+-++.+|.+. .+-+|..|..+|+.+..... +.+. -.+|.|+.-|.++ |+.++.+|+..+..|+. ++.|--.+
T Consensus 147 ~Dv~tLL~ss-kpYvRKkAIl~lykvFLkYP--eAlr---~~FprL~EkLeDp-Dp~V~SAAV~VICELArKnPknyL~L 219 (877)
T KOG1059|consen 147 DDVFTLLNSS-KPYVRKKAILLLYKVFLKYP--EALR---PCFPRLVEKLEDP-DPSVVSAAVSVICELARKNPQNYLQL 219 (877)
T ss_pred HHHHHHHhcC-chHHHHHHHHHHHHHHHhhh--HhHh---hhHHHHHHhccCC-CchHHHHHHHHHHHHHhhCCcccccc
Confidence 4567788888 88999999999998865422 2332 3689999999998 99999999999999987 45454332
Q ss_pred HhcCcHHHHHHHhc
Q 036338 272 INHKLITELGKLIT 285 (408)
Q Consensus 272 ~~~G~i~~Lv~lL~ 285 (408)
. |.+..+|.
T Consensus 220 A-----P~ffkllt 228 (877)
T KOG1059|consen 220 A-----PLFYKLLV 228 (877)
T ss_pred c-----HHHHHHHh
Confidence 2 44455554
No 310
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=71.67 E-value=28 Score=29.99 Aligned_cols=131 Identities=16% Similarity=0.127 Sum_probs=68.5
Q ss_pred CChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhc
Q 036338 141 DGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAG 220 (408)
Q Consensus 141 ~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~ 220 (408)
|..++.|+++|+.+.+..+..+++++|+.|-. -|... .+.+.. ..... . -... +..... ..+.+...
T Consensus 9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA--LDP~~-~k~~~~-~~~~~---~--~~~~-~~~~~~---~~l~~~~~ 75 (160)
T PF11865_consen 9 PELLDILLNILKTEQSQSIRREALRVLGILGA--LDPYK-HKSIQK-SLDSK---S--SENS-NDESTD---ISLPMMGI 75 (160)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc--cCcHH-Hhcccc-cCCcc---c--cccc-cccchh---hHHhhccC
Confidence 35677788888887634445999999998854 46554 232220 11100 0 0011 111111 11222222
Q ss_pred CcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc-hHHHHHhcCcHHHHHHHhccC
Q 036338 221 DADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR-AKTKLINHKLITELGKLITDG 287 (408)
Q Consensus 221 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~-n~~~~~~~G~i~~Lv~lL~~~ 287 (408)
.+..-+... .-++..|+++|++..-..-..+++.|+.++..... ...... .-+||.++..+++.
T Consensus 76 ~~~~ee~y~--~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L-~~viP~~l~~i~~~ 140 (160)
T PF11865_consen 76 SPSSEEYYP--TVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL-PQVIPIFLRVIRTC 140 (160)
T ss_pred CCchHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH-HHHhHHHHHHHHhC
Confidence 122223332 24688899999986444555567777777654322 122222 34789999999853
No 311
>PLN02400 cellulose synthase
Probab=71.65 E-value=2.4 Score=47.04 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=35.4
Q ss_pred cccCccccC-----CCceec--CCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338 15 RCPISLDVM-----KSPVSL--CTGVTYDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 15 ~Cpi~~~~~-----~dPv~~--~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
.|.||++-. -+|.+. .||.-.||.|.|-=.++|+..||+|+..+.
T Consensus 38 iCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 38 ICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred eeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 899999853 347666 499999999985446678889999987654
No 312
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=71.62 E-value=24 Score=29.28 Aligned_cols=74 Identities=20% Similarity=0.275 Sum_probs=58.9
Q ss_pred ccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc--hhhHHhhhcChHHHHHHhccc--CCCHHHHHHHHHHHHHhccCc
Q 036338 190 DCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD--SKVKIAERDGLLAETVKSLSL--DSDRRLIEASLSCLITISSSK 265 (408)
Q Consensus 190 g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~--~~~~i~~~~g~i~~Lv~lL~~--~~~~~~~~~A~~aL~~Ls~~~ 265 (408)
.++..|-+.|+++ ++.++..|..+|..+..+.. ....++. ..++..|++++.. ..++.+++.++..|.+.+...
T Consensus 37 ~a~raL~krl~~~-n~~vql~AL~lLd~~vkNcg~~f~~~i~s-~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f 114 (133)
T cd03561 37 EAARAIRKKIKYG-NPHVQLLALTLLELLVKNCGKPFHLQVAD-KEFLLELVKIAKNSPKYDPKVREKALELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhCChHHHHHHhh-HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3466778888898 99999999999999998764 4455555 5788889999976 457899999999998876643
No 313
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=71.30 E-value=86 Score=30.64 Aligned_cols=144 Identities=9% Similarity=0.072 Sum_probs=96.9
Q ss_pred hh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHhccCccc
Q 036338 114 ED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDC 191 (408)
Q Consensus 114 ~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~ 191 (408)
++ ...+-..|+...+. +..-+.|... ..+-.+...+..+. ++. ..|..++..+... +. .-....+...-...
T Consensus 137 ~dial~~g~mlRec~k~-e~l~~~iL~~-~~f~~ff~~~~~~~Fdia--sdaf~t~~~llt~-hk-~~~a~fl~~n~d~f 210 (335)
T PF08569_consen 137 PDIALNCGDMLRECIKH-ESLAKIILYS-ECFWKFFKYVQLPNFDIA--SDAFSTFKELLTR-HK-KLVAEFLSNNYDRF 210 (335)
T ss_dssp TTTHHHHHHHHHHHTTS-HHHHHHHHTS-GGGGGHHHHTTSSSHHHH--HHHHHHHHHHHHS-SH-HHHHHHHHHTHHHH
T ss_pred ccccchHHHHHHHHHhh-HHHHHHHhCc-HHHHHHHHHhcCCccHhH--HHHHHHHHHHHhc-cH-HHHHHHHHHHHHHH
Confidence 44 55666667777664 6666666666 77777888887776 544 7777777765431 22 11123332112355
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHh---hhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCc
Q 036338 192 LNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIA---ERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSK 265 (408)
Q Consensus 192 i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~---~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~ 265 (408)
+.....+|.++ +.-+|..+..+|+.|-.+..+...+. .+..-+..++.+|++. +...+-.|-..+--...++
T Consensus 211 f~~~~~Ll~s~-NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 211 FQKYNKLLESS-NYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHCT-S-SHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHccCC-CeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCC
Confidence 67788889998 99999999999999999888766543 4466788999999987 8888888888887666554
No 314
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.25 E-value=1e+02 Score=33.06 Aligned_cols=110 Identities=19% Similarity=0.164 Sum_probs=63.6
Q ss_pred HHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHH
Q 036338 102 VKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQH 179 (408)
Q Consensus 102 i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~ 179 (408)
+..+++...+.+.. |.+.+.-|+.+..++.+.-+-+.. +....|..-|.... .++ .+|+.+|..+-- ++.
T Consensus 87 f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn--~l~e~l~~Rl~Drep~VR--iqAv~aLsrlQ~---d~~- 158 (892)
T KOG2025|consen 87 FYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN--KLNEKLLIRLKDREPNVR--IQAVLALSRLQG---DPK- 158 (892)
T ss_pred HHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH--HHHHHHHHHHhccCchHH--HHHHHHHHHHhc---CCC-
Confidence 34444444555555 778888888777643332222322 44555555554443 344 889988888752 211
Q ss_pred HHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHH
Q 036338 180 LMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKI 228 (408)
Q Consensus 180 ~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i 228 (408)
. .+..++..++.++++.++.++|.. +|.+++-++.....|
T Consensus 159 --d----ee~~v~n~l~~liqnDpS~EVRRa---aLsnI~vdnsTlp~I 198 (892)
T KOG2025|consen 159 --D----EECPVVNLLKDLIQNDPSDEVRRA---ALSNISVDNSTLPCI 198 (892)
T ss_pred --C----CcccHHHHHHHHHhcCCcHHHHHH---HHHhhccCcccchhH
Confidence 0 134567778888887668899884 455555554444444
No 315
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=71.17 E-value=2.1 Score=40.34 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=19.4
Q ss_pred cccccCccccCC--C-ceecCCCCcccHh
Q 036338 13 FFRCPISLDVMK--S-PVSLCTGVTYDRA 38 (408)
Q Consensus 13 ~~~Cpi~~~~~~--d-Pv~~~cgh~f~r~ 38 (408)
.|.||+|+..|. + ...-+.||+|+..
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a 30 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCA 30 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCccc
Confidence 378999999996 2 3344588999765
No 316
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=71.13 E-value=28 Score=28.99 Aligned_cols=72 Identities=17% Similarity=0.103 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhC-hhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKES-DENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLIL 171 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~-~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~ 171 (408)
.+.++.|-+.|+++++. +..|+..|-.+++.. ......+.+. ..+..|+.++.+.. ...+.+.++..+...+
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~-~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASK-EFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 67889999999999887 999999999998874 5567778887 89999999998876 3335577777766543
No 317
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=71.11 E-value=1e+02 Score=29.86 Aligned_cols=160 Identities=17% Similarity=0.222 Sum_probs=103.4
Q ss_pred HHHHHHHHhcCChh-HHHHHHHHHHHhh-hChhh-hhhhhhcCChHHHHHHHhhcCc---ch---------hhHHHHHHH
Q 036338 102 VKDIIRVAISKNED-FSENLTKIVAFAK-ESDEN-KTFLAKFDGLVVMLVEILSNVN---DV---------NMLKQVIRV 166 (408)
Q Consensus 102 i~~Lv~~L~s~~~~-~~~Al~~L~~la~-~~~~~-r~~i~~~~G~i~~Lv~lL~s~~---~~---------~~~e~A~~~ 166 (408)
++.+-+.|.+.... ...+++-|..++. ++... ++.+...+--.+.+.+++.... .. .+....+..
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 45556667766655 6678888888887 55444 4444444233566777774322 01 233455554
Q ss_pred HHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHH-HhhcCc----chhhHHhhhcChHHHHHHh
Q 036338 167 LDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLE-FIAGDA----DSKVKIAERDGLLAETVKS 241 (408)
Q Consensus 167 L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~-~La~~~----~~~~~i~~~~g~i~~Lv~l 241 (408)
+..+... .+....+.++. ..+.+..+.+-|... +.++-.....+|. ++..++ ..|..+.. ...+..|+.+
T Consensus 138 ~Lsfl~~-~~~~~~~~lL~--~~~~~~~l~k~l~~D-~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn-~~~L~~l~~L 212 (330)
T PF11707_consen 138 WLSFLSS-GDPELKRDLLS--QKKLMSALFKGLRKD-PPETVILILETLKDKVLKDSSVSRSTKCKLFN-EWTLSQLASL 212 (330)
T ss_pred HHHHHcc-CCHHHHHHHHH--cCchHHHHHhcccCC-CHHHHHHHHHHHHHHhccCCCCChhhhhhhcC-HHHHHHHHHH
Confidence 4433321 34333244554 677799999999887 8888888888887 454443 46666666 6689999997
Q ss_pred cccCCCH----HHHHHHHHHHHHhccCcch
Q 036338 242 LSLDSDR----RLIEASLSCLITISSSKRA 267 (408)
Q Consensus 242 L~~~~~~----~~~~~A~~aL~~Ls~~~~n 267 (408)
.... ++ .+.+.+-..|..+|.++.+
T Consensus 213 y~~~-~~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 213 YSRD-GEDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred hccc-CCcccchHHHHHHHHHHHHhcCCCc
Confidence 7764 55 7888999999999976653
No 318
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=71.05 E-value=98 Score=29.49 Aligned_cols=173 Identities=12% Similarity=0.037 Sum_probs=108.0
Q ss_pred HHHHH-HHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH
Q 036338 102 VKDII-RVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH 179 (408)
Q Consensus 102 i~~Lv-~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~ 179 (408)
+..+| ..+++.+.+ |..|+++|.-.+--+.+. .. ..++.+...++.++ ..+...|+.++..+... ++...
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~----a~--~~l~l~~~~~~~~~-~~v~~~al~~l~Dll~~-~g~~~ 99 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKEL----AK--EHLPLFLQALQKDD-EEVKITALKALFDLLLT-HGIDI 99 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHH----HH--HHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHH-cCchh
Confidence 33444 345667777 899999998887544322 21 23666777775543 44558888888887642 22211
Q ss_pred HHHHHh----ccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccC---CCHHHHH
Q 036338 180 LMNLIL----KRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLD---SDRRLIE 252 (408)
Q Consensus 180 ~~~~i~----~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~ 252 (408)
+...-. ......+..+.+.|.+. +.+++..|+.-+..|-....... . ..++..|+-+.-++ .+...++
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~---~-~~vL~~Lll~yF~p~t~~~~~LrQ 174 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD---P-PKVLSRLLLLYFNPSTEDNQRLRQ 174 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc---H-HHHHHHHHHHHcCcccCCcHHHHH
Confidence 011000 00235678888888888 99999999999998876543222 1 23444454444332 2456666
Q ss_pred HHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccC
Q 036338 253 ASLSCLITISSSKRAKTKLINHKLITELGKLITDG 287 (408)
Q Consensus 253 ~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~ 287 (408)
.-...+-..+......+..+..+.+|.+-.+...+
T Consensus 175 ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 175 CLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCc
Confidence 66666667788777667777788999998888754
No 319
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=71.00 E-value=2.4 Score=30.45 Aligned_cols=12 Identities=17% Similarity=0.728 Sum_probs=9.0
Q ss_pred ccHhhHHHHHhc
Q 036338 35 YDRASIQRWLDS 46 (408)
Q Consensus 35 f~r~cI~~~~~~ 46 (408)
|||.|+.+|...
T Consensus 12 FCRNCLskWy~~ 23 (68)
T PF06844_consen 12 FCRNCLSKWYRE 23 (68)
T ss_dssp --HHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 320
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=70.71 E-value=2.4 Score=26.10 Aligned_cols=20 Identities=25% Similarity=0.423 Sum_probs=12.7
Q ss_pred CCCcccHhhHHHHHhcCCCCCCCcccc
Q 036338 31 TGVTYDRASIQRWLDSGNNTCPATMQV 57 (408)
Q Consensus 31 cgh~f~r~cI~~~~~~~~~~CP~~~~~ 57 (408)
|||+|.-.. ....||.|+.+
T Consensus 7 CGy~y~~~~-------~~~~CP~Cg~~ 26 (33)
T cd00350 7 CGYIYDGEE-------APWVCPVCGAP 26 (33)
T ss_pred CCCEECCCc-------CCCcCcCCCCc
Confidence 666664332 34579999864
No 321
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=70.62 E-value=18 Score=30.11 Aligned_cols=73 Identities=16% Similarity=0.180 Sum_probs=56.8
Q ss_pred ccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc--hhhHHhhhcChHHHHHHhcccCCCHH-HHHHHHHHHHHhccC
Q 036338 190 DCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD--SKVKIAERDGLLAETVKSLSLDSDRR-LIEASLSCLITISSS 264 (408)
Q Consensus 190 g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~-~~~~A~~aL~~Ls~~ 264 (408)
.++..|-+.|.++ ++.++..|..+|..+..+.. ....++. .+++..|++++....+.. +++.++..+.+.+..
T Consensus 37 ~a~r~l~krl~~~-n~~v~l~AL~lLe~~vkNcg~~f~~ev~s-~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 37 DAVRLLKKRLNNK-NPHVALLALTLLDACVKNCGSKFHLEVAS-KEFLNELVKLIKPKYPLPLVKKRILELIQEWADA 112 (133)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCCHHHHHHHHh-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH
Confidence 3466788888888 99999999999999988753 4455655 789999999998753434 888888888776653
No 322
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=70.60 E-value=3.5 Score=27.68 Aligned_cols=39 Identities=26% Similarity=0.601 Sum_probs=21.6
Q ss_pred ccCccccCCC--ceecCCCCc-----ccHhhHHHHHhc-CCCCCCCc
Q 036338 16 CPISLDVMKS--PVSLCTGVT-----YDRASIQRWLDS-GNNTCPAT 54 (408)
Q Consensus 16 Cpi~~~~~~d--Pv~~~cgh~-----f~r~cI~~~~~~-~~~~CP~~ 54 (408)
|=||++.-.+ |.+.||+-+ .=++|+++|+.. +...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 3455554332 677787533 247899999875 55678876
No 323
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=70.02 E-value=1.5e+02 Score=31.34 Aligned_cols=177 Identities=16% Similarity=0.189 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChh---hhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhccc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDE---NKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNK 173 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~---~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~ 173 (408)
.+-++.|.-.|++.+.. +.+.+.-+..++..+++ .|++++=. =-|+++|++.. +.+ +.|...++.++.
T Consensus 687 ~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIc----feLvd~Lks~nKeiR--R~A~~tfG~Is~- 759 (975)
T COG5181 687 SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRIC----FELVDSLKSWNKEIR--RNATETFGCISR- 759 (975)
T ss_pred hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHH----HHHHHHHHHhhHHHH--HhhhhhhhhHHh-
Confidence 34566777777776655 55566666666655544 46665422 23788888877 555 888888887764
Q ss_pred ccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcC---hHHHHHHhcccCCCHHH
Q 036338 174 IEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDG---LLAETVKSLSLDSDRRL 250 (408)
Q Consensus 174 ~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g---~i~~Lv~lL~~~~~~~~ 250 (408)
+|. -..++..|+.-|+.. ....|...+.+|.-.+ +..| ++|.|+.=-..+ +..+
T Consensus 760 ---------aiG--PqdvL~~LlnnLkvq-eRq~RvctsvaI~iVa----------e~cgpfsVlP~lm~dY~TP-e~nV 816 (975)
T COG5181 760 ---------AIG--PQDVLDILLNNLKVQ-ERQQRVCTSVAISIVA----------EYCGPFSVLPTLMSDYETP-EANV 816 (975)
T ss_pred ---------hcC--HHHHHHHHHhcchHH-HHHhhhhhhhhhhhhH----------hhcCchhhHHHHHhcccCc-hhHH
Confidence 221 222233344444444 4444444444444433 2233 345444444444 4456
Q ss_pred HHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338 251 IEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT 326 (408)
Q Consensus 251 ~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~ 326 (408)
+.-.++|+..+-..-.+...=--.-..|.|-+.|.+ .|+.-..-|..++..|+-+
T Consensus 817 QnGvLkam~fmFeyig~~s~dYvy~itPlleDAltD---------------------rD~vhRqta~nvI~Hl~Ln 871 (975)
T COG5181 817 QNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTD---------------------RDPVHRQTAMNVIRHLVLN 871 (975)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcc---------------------cchHHHHHHHHHHHHHhcC
Confidence 665566555443321111111112234445555654 3778888899999999864
No 324
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=69.73 E-value=5.9 Score=26.08 Aligned_cols=39 Identities=10% Similarity=0.364 Sum_probs=22.0
Q ss_pred ccCccccCCCceecC---CCCcccHhhHHHHHhcCC-CCCCCc
Q 036338 16 CPISLDVMKSPVSLC---TGVTYDRASIQRWLDSGN-NTCPAT 54 (408)
Q Consensus 16 Cpi~~~~~~dPv~~~---cgh~f~r~cI~~~~~~~~-~~CP~~ 54 (408)
|.+|.++...=+.=+ |+-.+=..|+..||.... ..||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 567777766665543 887888899999998644 369987
No 325
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=69.66 E-value=4 Score=28.30 Aligned_cols=27 Identities=19% Similarity=0.416 Sum_probs=23.0
Q ss_pred cccccCccccC--CCceec--CCCCcccHhh
Q 036338 13 FFRCPISLDVM--KSPVSL--CTGVTYDRAS 39 (408)
Q Consensus 13 ~~~Cpi~~~~~--~dPv~~--~cgh~f~r~c 39 (408)
.-.|++|++.| .|.+++ .||=.|=|.|
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C 35 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDC 35 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHH
Confidence 34799999999 788877 3999999998
No 326
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=69.62 E-value=15 Score=38.05 Aligned_cols=67 Identities=21% Similarity=0.211 Sum_probs=35.9
Q ss_pred ccHHHHHHH-HhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc
Q 036338 190 DCLNSLLLV-LKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR 266 (408)
Q Consensus 190 g~i~~Lv~l-L~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~ 266 (408)
|++..|+.. ...+ +.++|..|+-+|..+|..+ ...++..|++|....++-++-..+-||.-.|.+..
T Consensus 551 ~vv~~lLh~avsD~-nDDVrRAAViAlGfvc~~D---------~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G 618 (926)
T COG5116 551 GVVSTLLHYAVSDG-NDDVRRAAVIALGFVCCDD---------RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTG 618 (926)
T ss_pred hhHhhhheeecccC-chHHHHHHHHheeeeEecC---------cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCc
Confidence 444444444 3344 6667766666666665443 22344455555544455566666666665555443
No 327
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.60 E-value=1.7e+02 Score=31.71 Aligned_cols=105 Identities=18% Similarity=0.257 Sum_probs=57.0
Q ss_pred hHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc
Q 036338 143 LVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA 222 (408)
Q Consensus 143 ~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~ 222 (408)
.|..+..+|.+.+ ..+..+|+..|..|+. +++.++. +...+++++-..++-.++--..--|..+.
T Consensus 244 ~i~~i~~lL~sts-saV~fEaa~tlv~lS~---~p~alk~--------Aa~~~i~l~~kesdnnvklIvldrl~~l~--- 308 (948)
T KOG1058|consen 244 YIRCIYNLLSSTS-SAVIFEAAGTLVTLSN---DPTALKA--------AASTYIDLLVKESDNNVKLIVLDRLSELK--- 308 (948)
T ss_pred HHHHHHHHHhcCC-chhhhhhcceEEEccC---CHHHHHH--------HHHHHHHHHHhccCcchhhhhHHHHHHHh---
Confidence 3455677776665 2233666667766663 3332121 12334444432213333332223333333
Q ss_pred chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCc
Q 036338 223 DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSK 265 (408)
Q Consensus 223 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~ 265 (408)
...+.|.+ |.+--++++|..+ +.++++.++.....|+++.
T Consensus 309 ~~~~~il~--~l~mDvLrvLss~-dldvr~Ktldi~ldLvssr 348 (948)
T KOG1058|consen 309 ALHEKILQ--GLIMDVLRVLSSP-DLDVRSKTLDIALDLVSSR 348 (948)
T ss_pred hhhHHHHH--HHHHHHHHHcCcc-cccHHHHHHHHHHhhhhhc
Confidence 33344443 5666778888887 8889999998888887754
No 328
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=69.55 E-value=32 Score=28.53 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChh-hhhhhhhcCChHHHHHHHhhcC-c-chhhHHHHHHHHHHhc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDE-NKTFLAKFDGLVVMLVEILSNV-N-DVNMLKQVIRVLDLIL 171 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~-~r~~i~~~~G~i~~Lv~lL~s~-~-~~~~~e~A~~~L~~L~ 171 (408)
.+.++.|-+.|+++++. +..|+..|..+.+.... ....+... ..+..|+.++... . +.++...++..+...+
T Consensus 36 k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~-~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 36 KEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADK-EFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhH-HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 67889999999999887 99999999999887644 77778776 7777799999874 2 5556688888777654
No 329
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=68.95 E-value=67 Score=35.35 Aligned_cols=120 Identities=16% Similarity=0.162 Sum_probs=77.6
Q ss_pred cccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHh-hhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcch
Q 036338 189 QDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIA-ERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRA 267 (408)
Q Consensus 189 ~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~-~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n 267 (408)
...+|.|++..... +...|..=..+|.++-.+-. +..+. .....+|.|++-|.-+ |..++-.++.+|.-+-.-...
T Consensus 866 ~~ivP~l~~~~~t~-~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~Ls~~-D~~v~vstl~~i~~~l~~~~t 942 (1030)
T KOG1967|consen 866 CDIVPILVSKFETA-PGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQALSMP-DVIVRVSTLRTIPMLLTESET 942 (1030)
T ss_pred HhhHHHHHHHhccC-CccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhcCCC-ccchhhhHhhhhhHHHHhccc
Confidence 46788899888865 77788888888887765433 34443 3455778888888776 888888888887766443221
Q ss_pred HHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCC-CcchHHHHHHHHHHHhC-CHHHH
Q 036338 268 KTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNG-TVLITEKALRLVEILST-TKQGR 330 (408)
Q Consensus 268 ~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~L~~L~~-~~~~~ 330 (408)
-..---.-.||.++.+=.+. +. ...+++.|+-.|..|.. .|-.+
T Consensus 943 L~t~~~~Tlvp~lLsls~~~-------------------~n~~~~VR~~ALqcL~aL~~~~P~~~ 988 (1030)
T KOG1967|consen 943 LQTEHLSTLVPYLLSLSSDN-------------------DNNMMVVREDALQCLNALTRRLPTKS 988 (1030)
T ss_pred cchHHHhHHHHHHHhcCCCC-------------------CcchhHHHHHHHHHHHHHhccCCCcc
Confidence 11111223556666654432 11 36788999999999987 45443
No 330
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=68.90 E-value=3.5 Score=33.16 Aligned_cols=14 Identities=14% Similarity=0.140 Sum_probs=8.8
Q ss_pred CcccccCccccCCC
Q 036338 12 SFFRCPISLDVMKS 25 (408)
Q Consensus 12 ~~~~Cpi~~~~~~d 25 (408)
...+||-|+.-|.|
T Consensus 8 tKR~Cp~CG~kFYD 21 (108)
T PF09538_consen 8 TKRTCPSCGAKFYD 21 (108)
T ss_pred CcccCCCCcchhcc
Confidence 34568777766654
No 331
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=67.93 E-value=58 Score=35.24 Aligned_cols=157 Identities=11% Similarity=0.168 Sum_probs=93.3
Q ss_pred HHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhc-cCcccHHHHHHHHh
Q 036338 122 KIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILK-RDQDCLNSLLLVLK 200 (408)
Q Consensus 122 ~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~-~~~g~i~~Lv~lL~ 200 (408)
.|.....+++.+.+.+.+. |+...+..++++-+....+..++..|.|++. .... +..... ..-. ...+-.++.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~-~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~--~~~~--~~~~~~~~~~~-~~~f~~~~~ 567 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDN-GGMKLLFKCLESFDNEELHRKILGLLGNLAE--VLEL--RELLMIFEFID-FSVFKVLLN 567 (699)
T ss_pred HHHhhhcCCHHHHHHHHhc-ccHHHHHHHHhhccchhHHHHHHHHHHHHHH--Hhhh--hhhhhHHHHHH-HHHHHHHHh
Confidence 6778888899999999999 9999999999977634455889999999885 2211 111000 0000 011111222
Q ss_pred cCCChHHHHHHHHHHHHhhcC------------------------cchhhHHhhhcChHHH-HHHhcccCCCHHHHHHHH
Q 036338 201 QQESVDSRIESLRLLEFIAGD------------------------ADSKVKIAERDGLLAE-TVKSLSLDSDRRLIEASL 255 (408)
Q Consensus 201 ~~~~~~~~~~Aa~~L~~La~~------------------------~~~~~~i~~~~g~i~~-Lv~lL~~~~~~~~~~~A~ 255 (408)
.-.+.+.-..|+.+|..+..+ ......... ...+.+ +.+++.....+..+-.|+
T Consensus 568 ~w~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~-~~~f~~~~~~il~~s~~~g~~lWal 646 (699)
T KOG3665|consen 568 KWDSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVIN-DRSFFPRILRILRLSKSDGSQLWAL 646 (699)
T ss_pred hcchhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehh-hhhcchhHHHHhcccCCCchHHHHH
Confidence 220113333444444444332 111111111 234455 666676655677888999
Q ss_pred HHHHHhccC-cchHHHHHhcCcHHHHHHHhc
Q 036338 256 SCLITISSS-KRAKTKLINHKLITELGKLIT 285 (408)
Q Consensus 256 ~aL~~Ls~~-~~n~~~~~~~G~i~~Lv~lL~ 285 (408)
+++.++... +++.+.+.+.|+++.+...-.
T Consensus 647 ~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (699)
T KOG3665|consen 647 WTIKNVLEQNKEYCKLVRESNGFELIENIRV 677 (699)
T ss_pred HHHHHHHHcChhhhhhhHhccchhhhhhcch
Confidence 999998774 557777778888887776654
No 332
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=67.91 E-value=28 Score=29.23 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhC-hhhhhhhhhcCChHHHHHHHhhcCc-chh--hHHHHHHHHHHhc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKES-DENKTFLAKFDGLVVMLVEILSNVN-DVN--MLKQVIRVLDLIL 171 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~-~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~--~~e~A~~~L~~L~ 171 (408)
.+.++.|-+.|+++++. +..|+..|..+++.. +..+..+... ..+..|+.++.+.. ... +.+.++..|...+
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~-~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASK-EFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH-HHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHH-HHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 67788999999999888 999999999999875 5677788887 89999999998766 322 5577777666543
No 333
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=67.39 E-value=37 Score=29.39 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=51.0
Q ss_pred ChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhc--CcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCc
Q 036338 233 GLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINH--KLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTV 310 (408)
Q Consensus 233 g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~--G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (408)
..+..+..+|+++ ++..+-.++..+..++...+ ...+.+. --+..|+..|+.+ +..
T Consensus 25 ~l~~ri~~LL~s~-~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~--------------------~~~ 82 (165)
T PF08167_consen 25 KLVTRINSLLQSK-SAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKP--------------------DPP 82 (165)
T ss_pred HHHHHHHHHhCCC-ChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCC--------------------CCH
Confidence 4677788899886 78888888888888887643 2334333 3457788888753 466
Q ss_pred chHHHHHHHHHHHhC
Q 036338 311 LITEKALRLVEILST 325 (408)
Q Consensus 311 ~~~~~a~~~L~~L~~ 325 (408)
.+.+.++.+|..|..
T Consensus 83 ~~~~~ai~~L~~l~~ 97 (165)
T PF08167_consen 83 SVLEAAIITLTRLFD 97 (165)
T ss_pred HHHHHHHHHHHHHHH
Confidence 788888888888764
No 334
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=65.90 E-value=40 Score=28.56 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhCh-hhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESD-ENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLIL 171 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~-~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~ 171 (408)
.+.++.|.++|.+.++. +..|+..|..+++... .....|... ..+..|+.++....+.++.+.++..+...+
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask-~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASR-DFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhH-HHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 67899999999998887 9999999999988754 466678777 999999999987543445587877776654
No 335
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=65.47 E-value=40 Score=35.10 Aligned_cols=114 Identities=6% Similarity=0.134 Sum_probs=81.2
Q ss_pred cHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHH
Q 036338 191 CLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTK 270 (408)
Q Consensus 191 ~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~ 270 (408)
.+..++++|.+....-.-.....+|.+|+..-+.+...-. ..++|.|.+-|+.. +..+...|.+.+..|+..-...-.
T Consensus 598 lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~-~~fiPyl~~aln~~-d~~v~~~avglvgdlantl~~df~ 675 (858)
T COG5215 598 LMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYA-SKFIPYLTRALNCT-DRFVLNSAVGLVGDLANTLGTDFN 675 (858)
T ss_pred HHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHhcch-hHHHHHHHHHHHHHHHHHhhhhHH
Confidence 5677888887652333446677788888766554444444 56899999999664 888999999999999886554444
Q ss_pred HHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 271 LINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 271 ~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
+...-....|++.|+++ ..++.++-..+.+..-++.
T Consensus 676 ~y~d~~ms~LvQ~lss~-------------------~~~R~lKPaiLSvFgDIAl 711 (858)
T COG5215 676 IYADVLMSSLVQCLSSE-------------------ATHRDLKPAILSVFGDIAL 711 (858)
T ss_pred HHHHHHHHHHHHHhcCh-------------------hhccccchHHHHHHHHHHH
Confidence 45555778999999986 4567777766666666553
No 336
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=65.37 E-value=4.4 Score=38.88 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=36.9
Q ss_pred CCcccccCccccCCCceecCCCCcccHhhHHHHHhc-CCCCCCCcccc
Q 036338 11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDS-GNNTCPATMQV 57 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~-~~~~CP~~~~~ 57 (408)
.+...|-||-+-..---++||||..|.-|-.+.-.- ....||.|+..
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 456789999999988889999999999997664221 23569999854
No 337
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=65.23 E-value=1.3e+02 Score=32.32 Aligned_cols=131 Identities=12% Similarity=0.153 Sum_probs=85.9
Q ss_pred ChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC
Q 036338 142 GLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD 221 (408)
Q Consensus 142 G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~ 221 (408)
.++|.|...++..+ .++++.++..+...+.. -|...+++ -++|.|-.+-....+..++.+++.++..+...
T Consensus 389 ~IlplL~~S~~~~~-~~iQ~~~L~~lptv~e~-iD~~~vk~-------~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~ 459 (700)
T KOG2137|consen 389 KILPLLYRSLEDSD-VQIQELALQILPTVAES-IDVPFVKQ-------AILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR 459 (700)
T ss_pred HHHHHHHHHhcCcc-hhhHHHHHHhhhHHHHh-ccHHHHHH-------HHHHHhhcchhcccchHHHHHHHHHHHHHHHH
Confidence 46666666666554 66679999988887642 23333333 34666655533322788999999999999822
Q ss_pred cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhcc
Q 036338 222 ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITD 286 (408)
Q Consensus 222 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~ 286 (408)
- .+..+.+ -+.++.+..+.. ++...-.-+++.-++....-++.......++|.++-+...
T Consensus 460 l-D~~~v~d---~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~ 519 (700)
T KOG2137|consen 460 L-DKAAVLD---ELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVA 519 (700)
T ss_pred H-HHHHhHH---HHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhc
Confidence 2 2333333 367777777775 7777777777777777665555555567788888888764
No 338
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.00 E-value=5.6 Score=31.59 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=23.3
Q ss_pred CCCCcccccCccccCC----CceecC-CCCcccHhhHHH
Q 036338 9 TVPSFFRCPISLDVMK----SPVSLC-TGVTYDRASIQR 42 (408)
Q Consensus 9 ~~~~~~~Cpi~~~~~~----dPv~~~-cgh~f~r~cI~~ 42 (408)
++-..-+||-|+.-|. +|++.| ||.+|-++..+.
T Consensus 5 eLGtKridPetg~KFYDLNrdPiVsPytG~s~P~s~fe~ 43 (129)
T COG4530 5 ELGTKRIDPETGKKFYDLNRDPIVSPYTGKSYPRSYFEE 43 (129)
T ss_pred cccccccCccccchhhccCCCccccCcccccchHHHHHh
Confidence 3444567999988774 488776 888886665443
No 339
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=64.93 E-value=3.3 Score=40.36 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=38.7
Q ss_pred CCcccccCccccCCCc---ee-cCCCCcccHhhHHHH-HhcCCCCCCCcccccCCCCC
Q 036338 11 PSFFRCPISLDVMKSP---VS-LCTGVTYDRASIQRW-LDSGNNTCPATMQVLQSKEF 63 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dP---v~-~~cgh~f~r~cI~~~-~~~~~~~CP~~~~~l~~~~l 63 (408)
..+|.||+...+|.+= |- -.+|..||-+.|++. ++..+...-++..||+..|+
T Consensus 99 ~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~LNiK~knwkdLltdepFtR~Di 156 (518)
T KOG0883|consen 99 EGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEELNIKTKNWKDLLTDEPFTRADI 156 (518)
T ss_pred CCcccCceeeeeecccceEEEEEecCceeeHHHHHHhCcchhhHHHhhccCCcchhce
Confidence 5679999999999882 22 269999999999996 55555555555556655554
No 340
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=64.70 E-value=1.3e+02 Score=35.07 Aligned_cols=151 Identities=13% Similarity=0.184 Sum_probs=92.3
Q ss_pred hhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHH
Q 036338 134 KTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLR 213 (408)
Q Consensus 134 r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~ 213 (408)
+......++.+..++.+|..+. +.+...|+++|..+.. .|.. ++. ...+-..+...+... +..+|+.|..
T Consensus 808 r~f~~sfD~yLk~Il~~l~e~~-ialRtkAlKclS~ive--~Dp~----vL~--~~dvq~~Vh~R~~Ds-sasVREAald 877 (1692)
T KOG1020|consen 808 RSFSQSFDPYLKLILSVLGENA-IALRTKALKCLSMIVE--ADPS----VLS--RPDVQEAVHGRLNDS-SASVREAALD 877 (1692)
T ss_pred hHHHHhhHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHh--cChH----hhc--CHHHHHHHHHhhccc-hhHHHHHHHH
Confidence 3344444467777888888655 3334899999999875 3432 221 333344444555566 8899999999
Q ss_pred HHHHhh-cCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCC
Q 036338 214 LLEFIA-GDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNG 292 (408)
Q Consensus 214 ~L~~La-~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~ 292 (408)
+++... ..++.-..+ ...+..-..+. ...+|+.+.+.|+.+|...++-..++ ...+.+|+--
T Consensus 878 LvGrfvl~~~e~~~qy------Y~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf~~i~-----~~cakmlrRv----- 940 (1692)
T KOG1020|consen 878 LVGRFVLSIPELIFQY------YDQIIERILDT-GVSVRKRVIKILRDICEETPDFSKIV-----DMCAKMLRRV----- 940 (1692)
T ss_pred HHhhhhhccHHHHHHH------HHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCChhhHH-----HHHHHHHHHh-----
Confidence 999543 344433222 33445544453 67899999999999998776555544 3345555432
Q ss_pred CCCCCCCCCCCCCCCCCcchHHHHHHHHHHHh
Q 036338 293 SGNGNGNGNGNGSGNGTVLITEKALRLVEILS 324 (408)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~ 324 (408)
+++...+++.+..++.+|=
T Consensus 941 -------------~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 941 -------------NDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred -------------ccchhHHHHHHHHHHHHHh
Confidence 0122236666777776663
No 341
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=64.47 E-value=16 Score=37.14 Aligned_cols=101 Identities=9% Similarity=0.126 Sum_probs=63.5
Q ss_pred hhhHHHHHHHHHHhcccccc---hHHHHHHHhccCcccHHHHHHH-HhcCCChHHHHHHHHHHHHhhcCcchhhHHhh-h
Q 036338 157 VNMLKQVIRVLDLILNKIED---QQHLMNLILKRDQDCLNSLLLV-LKQQESVDSRIESLRLLEFIAGDADSKVKIAE-R 231 (408)
Q Consensus 157 ~~~~e~A~~~L~~L~~~~~~---~~~~~~~i~~~~~g~i~~Lv~l-L~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~-~ 231 (408)
.++..+|..+|.|+..- -+ ....+..+ .|.+..++.. +..+ ...+|.+|+.++.||-+++..+..-.. .
T Consensus 498 dkV~~navraLgnllQv-lq~i~~~~~~e~~----~~~~~~l~~~v~~~~-~~kV~WNaCya~gNLfkn~a~~lq~~~wA 571 (728)
T KOG4535|consen 498 DKVKSNAVRALGNLLQF-LQPIEKPTFAEII----EESIQALISTVLTEA-AMKVRWNACYAMGNLFKNPALPLQTAPWA 571 (728)
T ss_pred hhhhhHHHHHHhhHHHH-HHHhhhccHHHHH----HHHHHhcccceeccc-ccccchHHHHHHHHhhcCccccccCCCch
Confidence 34558888888887530 01 00011222 2333333322 2345 788999999999999988754322211 1
Q ss_pred cChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338 232 DGLLAETVKSLSLDSDRRLIEASLSCLITISS 263 (408)
Q Consensus 232 ~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~ 263 (408)
.-+++.|..++.+..+-.++-.|+.||.--..
T Consensus 572 ~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~ 603 (728)
T KOG4535|consen 572 SQAFNALTSLVTSCKNFKVRIRAAAALSVPGK 603 (728)
T ss_pred HHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence 33688899999876688899999999987655
No 342
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.43 E-value=3.7 Score=41.24 Aligned_cols=70 Identities=24% Similarity=0.358 Sum_probs=51.5
Q ss_pred CCCCcccccCc-cccCCCceec--CCCCcccHhhHHHHHhcC-CCCCCCcccccCCCCCcccHHHHHHHHHHHHhc
Q 036338 9 TVPSFFRCPIS-LDVMKSPVSL--CTGVTYDRASIQRWLDSG-NNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSV 80 (408)
Q Consensus 9 ~~~~~~~Cpi~-~~~~~dPv~~--~cgh~f~r~cI~~~~~~~-~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~ 80 (408)
..++.+.|++| .+.|.+-+++ .|+-+||..||++-+..+ ...|+.|.. ....+.++..++..+....+..
T Consensus 215 ~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~~~~c~~~~~--~~~~~~~p~~~r~~~n~~~a~~ 288 (448)
T KOG0314|consen 215 ELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKSMCVCGASNV--LADDLLPPKTLRDTINRILASG 288 (448)
T ss_pred cCCccccCceecchhhHHHHHhhhhhcccCCccccccccccccCCcchhhcc--cccccCCchhhHHHHHHHHhhh
Confidence 56889999999 9999999988 499999999999876543 334555543 2355677777777766655543
No 343
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=64.24 E-value=4.2 Score=36.36 Aligned_cols=45 Identities=18% Similarity=0.422 Sum_probs=36.5
Q ss_pred ccccCccccCCCceec-CCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338 14 FRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 14 ~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
..|.+|..+.-.=+.- .||-.|-+.|+..++.+ ...||.|+.-.+
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~-~~~cphc~d~w~ 227 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR-RDICPHCGDLWT 227 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcc-cCcCCchhcccC
Confidence 3699999988776654 58889999999999987 667999975443
No 344
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=63.19 E-value=32 Score=26.71 Aligned_cols=82 Identities=15% Similarity=0.130 Sum_probs=60.5
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHh
Q 036338 194 SLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLIN 273 (408)
Q Consensus 194 ~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~ 273 (408)
..+..|.++ ..-+|.++...|..|....+ ..+....+++..+...|+++ ++-+--+|...|..|+.....
T Consensus 7 ~al~~L~dp-~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~------ 76 (92)
T PF10363_consen 7 EALSDLNDP-LPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPD------ 76 (92)
T ss_pred HHHHHccCC-CcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChH------
Confidence 344566777 78899999999999987766 22222257888888999987 888999999999999886542
Q ss_pred cCcHHHHHHHhcc
Q 036338 274 HKLITELGKLITD 286 (408)
Q Consensus 274 ~G~i~~Lv~lL~~ 286 (408)
.+++.|++...+
T Consensus 77 -~vl~~L~~~y~~ 88 (92)
T PF10363_consen 77 -EVLPILLDEYAD 88 (92)
T ss_pred -HHHHHHHHHHhC
Confidence 255666666543
No 345
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.16 E-value=80 Score=35.72 Aligned_cols=130 Identities=17% Similarity=0.154 Sum_probs=91.4
Q ss_pred Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCccc
Q 036338 113 NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDC 191 (408)
Q Consensus 113 ~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~ 191 (408)
+++ |..|.-+|..++--+.+.. + --.|.|+..+.....+.+..+++.+|+.|+. .-+ .++ .-.
T Consensus 936 dp~Lq~AAtLaL~klM~iSa~fc----e--s~l~llftimeksp~p~IRsN~VvalgDlav---~fp---nli----e~~ 999 (1251)
T KOG0414|consen 936 DPELQAAATLALGKLMCISAEFC----E--SHLPLLFTIMEKSPSPRIRSNLVVALGDLAV---RFP---NLI----EPW 999 (1251)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHH----H--HHHHHHHHHHhcCCCceeeecchheccchhh---hcc---ccc----chh
Confidence 456 7777777777754433322 1 3478899999754434455888888888775 222 122 245
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCc
Q 036338 192 LNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSK 265 (408)
Q Consensus 192 i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~ 265 (408)
-+.|.+.|+.. +..+|..|..+|.+|-.++- | ...|-++.+..+|.++ +.+.+.-|-.....|+.-.
T Consensus 1000 T~~Ly~rL~D~-~~~vRkta~lvlshLILndm----i-KVKGql~eMA~cl~D~-~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 1000 TEHLYRRLRDE-SPSVRKTALLVLSHLILNDM----I-KVKGQLSEMALCLEDP-NAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred hHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhh----h-HhcccHHHHHHHhcCC-cHHHHHHHHHHHHHhhhcc
Confidence 67788888888 99999999999999987652 3 3378899999999998 8888888876666666543
No 346
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=63.10 E-value=19 Score=38.45 Aligned_cols=15 Identities=0% Similarity=0.009 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhcCCh
Q 036338 100 DEVKDIIRVAISKNE 114 (408)
Q Consensus 100 ~~i~~Lv~~L~s~~~ 114 (408)
+....|...|+..+.
T Consensus 413 ~~~~yL~~~Lk~~~~ 427 (929)
T KOG2062|consen 413 GITDYLLQQLKTAEN 427 (929)
T ss_pred cHHHHHHHHHHhccc
Confidence 345556666665543
No 347
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.03 E-value=5.2 Score=34.66 Aligned_cols=45 Identities=16% Similarity=0.438 Sum_probs=31.2
Q ss_pred cccCccccCCC-----ce--ecCCCCcccHhhHHHHHhc-----CC-----CCCCCcccccC
Q 036338 15 RCPISLDVMKS-----PV--SLCTGVTYDRASIQRWLDS-----GN-----NTCPATMQVLQ 59 (408)
Q Consensus 15 ~Cpi~~~~~~d-----Pv--~~~cgh~f~r~cI~~~~~~-----~~-----~~CP~~~~~l~ 59 (408)
-|-||..+--| -+ -+.||+.|-+-|+.+|+.. .+ ..||.|..++.
T Consensus 167 ~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 167 ACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred cccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 46676554433 22 1469999999999999863 12 36999988754
No 348
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=62.95 E-value=1.2e+02 Score=31.77 Aligned_cols=77 Identities=14% Similarity=0.054 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHH---hcCcHHHH
Q 036338 204 SVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLI---NHKLITEL 280 (408)
Q Consensus 204 ~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~---~~G~i~~L 280 (408)
+.-+|..|..+|..++.+.+....- ..+.-.|-++|.+. |.+++..|.-+|.++-..+.. ..++ +-|-||.|
T Consensus 500 N~ivRsaAv~aLskf~ln~~d~~~~---~sv~~~lkRclnD~-DdeVRdrAsf~l~~~~~~da~-~pl~~sd~~~dipsl 574 (898)
T COG5240 500 NNIVRSAAVQALSKFALNISDVVSP---QSVENALKRCLNDQ-DDEVRDRASFLLRNMRLSDAC-EPLFSSDELGDIPSL 574 (898)
T ss_pred hhHHHHHHHHHHHHhccCccccccH---HHHHHHHHHHhhcc-cHHHHHHHHHHHHhhhhhhhh-hccccccccCCcchh
Confidence 5678888999998888765433322 23456677788876 889999999999998643332 2233 35677777
Q ss_pred HHHhc
Q 036338 281 GKLIT 285 (408)
Q Consensus 281 v~lL~ 285 (408)
..-|.
T Consensus 575 e~~l~ 579 (898)
T COG5240 575 ELELI 579 (898)
T ss_pred HHhhh
Confidence 65543
No 349
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=62.92 E-value=3.6 Score=34.21 Aligned_cols=43 Identities=21% Similarity=0.378 Sum_probs=31.2
Q ss_pred cccccCccccCCC--cee-cCCC------CcccHhhHHHHHhcCCCCCCCccc
Q 036338 13 FFRCPISLDVMKS--PVS-LCTG------VTYDRASIQRWLDSGNNTCPATMQ 56 (408)
Q Consensus 13 ~~~Cpi~~~~~~d--Pv~-~~cg------h~f~r~cI~~~~~~~~~~CP~~~~ 56 (408)
..-|.||.+-..+ =|+ ++|| |-||.+|+.+|-. .....|.=|.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~-~~~rDPfnR~ 77 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR-ERNRDPFNRN 77 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh-hccCCCcccc
Confidence 4559999999888 444 4677 4699999999953 3445676554
No 350
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.70 E-value=3.9 Score=38.26 Aligned_cols=28 Identities=14% Similarity=0.409 Sum_probs=20.8
Q ss_pred ccHhhHHHHHh------------cCCCCCCCcccccCCCC
Q 036338 35 YDRASIQRWLD------------SGNNTCPATMQVLQSKE 62 (408)
Q Consensus 35 f~r~cI~~~~~------------~~~~~CP~~~~~l~~~~ 62 (408)
.|++|+.+||. +|+.+||.||+.+.-.|
T Consensus 329 wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 329 WCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred HHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 45799999984 24568999998876433
No 351
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=62.65 E-value=5.6 Score=27.46 Aligned_cols=9 Identities=33% Similarity=0.471 Sum_probs=7.1
Q ss_pred CCCCCcccc
Q 036338 49 NTCPATMQV 57 (408)
Q Consensus 49 ~~CP~~~~~ 57 (408)
.+||.|++.
T Consensus 29 lyCpKCK~E 37 (55)
T PF14205_consen 29 LYCPKCKQE 37 (55)
T ss_pred ccCCCCCce
Confidence 469999875
No 352
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=62.54 E-value=7.6 Score=27.00 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=20.4
Q ss_pred CcccHhhHHHHHhcCCCCCCCcccccCCC
Q 036338 33 VTYDRASIQRWLDSGNNTCPATMQVLQSK 61 (408)
Q Consensus 33 h~f~r~cI~~~~~~~~~~CP~~~~~l~~~ 61 (408)
.|||..|-+..+. ..||.|+-.|...
T Consensus 29 CTFC~~C~e~~l~---~~CPNCgGelv~R 54 (57)
T PF06906_consen 29 CTFCADCAETMLN---GVCPNCGGELVRR 54 (57)
T ss_pred CcccHHHHHHHhc---CcCcCCCCccccC
Confidence 5999999988775 3799998766543
No 353
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=62.45 E-value=37 Score=28.60 Aligned_cols=72 Identities=13% Similarity=0.151 Sum_probs=56.7
Q ss_pred ccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc--hhhHHhhhcChHHHHHHhccc-----CCCHHHHHHHHHHHHHhc
Q 036338 190 DCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD--SKVKIAERDGLLAETVKSLSL-----DSDRRLIEASLSCLITIS 262 (408)
Q Consensus 190 g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~--~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~~A~~aL~~Ls 262 (408)
.++..|.+.|.++ ++.++..|..+|..+..+.. ....|+. .+++..|++++.. ..+..++...+..|..-+
T Consensus 38 ~a~rai~krl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evas-~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 38 LAVRLLAHKIQSP-QEKEALQALTVLEACMKNCGERFHSEVGK-FRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHHh-HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3466788888998 99999999999999988753 5566665 7899999999963 246789998888887665
Q ss_pred c
Q 036338 263 S 263 (408)
Q Consensus 263 ~ 263 (408)
.
T Consensus 116 ~ 116 (139)
T cd03567 116 L 116 (139)
T ss_pred H
Confidence 4
No 354
>PRK14707 hypothetical protein; Provisional
Probab=62.44 E-value=3.7e+02 Score=33.04 Aligned_cols=218 Identities=13% Similarity=0.067 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHhcC--ChhHHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338 99 QDEVKDIIRVAISK--NEDFSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED 176 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~--~~~~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~ 176 (408)
...|..++.-++.- +++...|+..|..........+..+-. -.|...++.|+.-.+..+++.|+..|..=.. +
T Consensus 204 ~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~--q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~---~ 278 (2710)
T PRK14707 204 AQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKP--QELGNALNALSKWADTPVCAAAASALAERLV---D 278 (2710)
T ss_pred hHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCCh--HHHHHHHHHHhcCCCchHHHHHHHHHHHHHh---h
Confidence 44555555554432 334566667666665554555544443 3455666666654444455666666654221 2
Q ss_pred hHHHHHHHhccCcccHHHHHHHHhc-CCChHHHHHHHHHH-HHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHH
Q 036338 177 QQHLMNLILKRDQDCLNSLLLVLKQ-QESVDSRIESLRLL-EFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEAS 254 (408)
Q Consensus 177 ~~~~~~~i~~~~~g~i~~Lv~lL~~-~~~~~~~~~Aa~~L-~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A 254 (408)
+..+++.+ ++--+...+.-|.. . +..+...|+..| ..|..+++-+..+-. .++-..|-.+-+-+++.....+|
T Consensus 279 ~~~l~~al---~~q~vanalNalSKwp-d~~vc~~Aa~~la~rl~~d~~l~~~~~~-~~~~~~LNalsKWpd~~~C~~Aa 353 (2710)
T PRK14707 279 DPGLRKAL---DPINVTQALNALSKWA-DLPVCAEAAIALAERLADDPELCKALNA-RGLSTALNALSKWPDNPVCAAAV 353 (2710)
T ss_pred hHHHHHhc---CHHHHHHHHhhhhcCC-CchHHHHHHHHHHHHHhccHhhhhccch-HHHHHHHHHhhcCCCchhHHHHH
Confidence 33334544 34344444444543 4 555554444444 477777766665543 44444444455556455555555
Q ss_pred HHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHH-HHHhCCHHHHHHH
Q 036338 255 LSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLV-EILSTTKQGRMEI 333 (408)
Q Consensus 255 ~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L-~~L~~~~~~~~~~ 333 (408)
...-..|+..++-+..+--.|+-..|=.+-.+| +......|+..| ..|..+++-+..+
T Consensus 354 ~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp---------------------~~~~c~~aa~~LA~~l~~d~~l~~~~ 412 (2710)
T PRK14707 354 SALAERLVADPELRKDLEPQGVSSVLNALSKWP---------------------DTPVCAAAASALAEHVVDDLELRKGL 412 (2710)
T ss_pred HHHHHHhccCHhhhcccchhHHHHHHhhhhcCC---------------------CchHHHHHHHHHHHHhccChhhhhhc
Confidence 555557888888777777666666666666665 444444444444 4566778888877
Q ss_pred HhhcCchHHHHHHHHH
Q 036338 334 CQDAALLNGVVQKMLK 349 (408)
Q Consensus 334 ~~~~g~i~~lv~~l~~ 349 (408)
-.. ++..+++.|.+
T Consensus 413 ~~Q--~van~lnalsK 426 (2710)
T PRK14707 413 DPQ--GVSNALNALAK 426 (2710)
T ss_pred chh--hHHHHHHHhhc
Confidence 543 46666666666
No 355
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=62.40 E-value=1.4e+02 Score=32.88 Aligned_cols=161 Identities=11% Similarity=0.053 Sum_probs=104.9
Q ss_pred ChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHH
Q 036338 204 SVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKL 283 (408)
Q Consensus 204 ~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~l 283 (408)
..-.|..|.+++...+. .+...--..++++.|..+.... +.++...-..+|...++.+.......++-+.|..+.+
T Consensus 504 ~~~~ki~a~~~~~~~~~---~~vl~~~~p~ild~L~qlas~~-s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~l 579 (1005)
T KOG2274|consen 504 PPPVKISAVRAFCGYCK---VKVLLSLQPMILDGLLQLASKS-SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINL 579 (1005)
T ss_pred CCchhHHHHHHHHhccC---ceeccccchHHHHHHHHHcccc-cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHH
Confidence 44455666665555541 1111222367788888888775 7788888899999999988777777788888888888
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHH--------------
Q 036338 284 ITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLK-------------- 349 (408)
Q Consensus 284 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~-------------- 349 (408)
...- +.|+.+...+-.++..|+...++..-+.. ..||.+|..|.-
T Consensus 580 F~k~-------------------s~DP~V~~~~qd~f~el~q~~~~~g~m~e--~~iPslisil~~~~~~~~~~l~~~ai 638 (1005)
T KOG2274|consen 580 FLKY-------------------SEDPQVASLAQDLFEELLQIAANYGPMQE--RLIPSLISVLQLNADKAPAGLCAIAI 638 (1005)
T ss_pred HHHh-------------------cCCchHHHHHHHHHHHHHHHHHhhcchHH--HHHHHHHHHHcCcccccCchhhHHHH
Confidence 7543 45889999999999999875555555543 568888885433
Q ss_pred HHHHHHHh-----------cCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 350 TAQEAVSS-----------SNVLTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 350 ~~~~~~~~-----------~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
+..-.+++ .-++|++....-.......=+.+.+.||.+-.
T Consensus 639 dvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 639 DVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred HHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 22222222 23455555544333345566777777776655
No 356
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=62.10 E-value=4.7 Score=34.32 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=10.8
Q ss_pred CCCCCCCcccccCC
Q 036338 47 GNNTCPATMQVLQS 60 (408)
Q Consensus 47 ~~~~CP~~~~~l~~ 60 (408)
+.+.||.|+.++..
T Consensus 122 ~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 122 GTFTCPRCGEELEE 135 (147)
T ss_pred CcEECCCCCCEEEE
Confidence 34789999988754
No 357
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=61.34 E-value=54 Score=36.97 Aligned_cols=141 Identities=16% Similarity=0.134 Sum_probs=95.5
Q ss_pred hHHHHHHHhhcCc---chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 036338 143 LVVMLVEILSNVN---DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIA 219 (408)
Q Consensus 143 ~i~~Lv~lL~s~~---~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La 219 (408)
..|.++..-+.+. ++..+..|.-+|+.+.. -+.+ + -...+|.|+..+....++-+|.++..+++.|+
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~--iSa~-----f---ces~l~llftimeksp~p~IRsN~VvalgDla 989 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMC--ISAE-----F---CESHLPLLFTIMEKSPSPRIRSNLVVALGDLA 989 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh--hhHH-----H---HHHHHHHHHHHHhcCCCceeeecchheccchh
Confidence 4566666665443 44455777777777653 1222 1 13458889999984339999999999999988
Q ss_pred cCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCC
Q 036338 220 GDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGN 299 (408)
Q Consensus 220 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~ 299 (408)
..-.+ +.+ -.-+.|...|++. ++.+++.|...|.+|-.++.-+ -.|.++-+...|.++
T Consensus 990 v~fpn---lie--~~T~~Ly~rL~D~-~~~vRkta~lvlshLILndmiK----VKGql~eMA~cl~D~------------ 1047 (1251)
T KOG0414|consen 990 VRFPN---LIE--PWTEHLYRRLRDE-SPSVRKTALLVLSHLILNDMIK----VKGQLSEMALCLEDP------------ 1047 (1251)
T ss_pred hhccc---ccc--hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhhhH----hcccHHHHHHHhcCC------------
Confidence 54332 121 2456688888887 9999999999999998765322 368888888888754
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHh
Q 036338 300 GNGNGSGNGTVLITEKALRLVEILS 324 (408)
Q Consensus 300 ~~~~~~~~~~~~~~~~a~~~L~~L~ 324 (408)
+..+...|-.....|+
T Consensus 1048 ---------~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 1048 ---------NAEISDLAKSFFKELS 1063 (1251)
T ss_pred ---------cHHHHHHHHHHHHHhh
Confidence 6677777764444443
No 358
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=61.22 E-value=5.4 Score=32.77 Aligned_cols=16 Identities=13% Similarity=0.106 Sum_probs=10.1
Q ss_pred CCCcccccCccccCCC
Q 036338 10 VPSFFRCPISLDVMKS 25 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~d 25 (408)
+-...+||-|+.-|.|
T Consensus 6 lGtKr~Cp~cg~kFYD 21 (129)
T TIGR02300 6 LGTKRICPNTGSKFYD 21 (129)
T ss_pred hCccccCCCcCccccc
Confidence 3345578888776644
No 359
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.85 E-value=2.6e+02 Score=30.79 Aligned_cols=161 Identities=10% Similarity=0.091 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhccc----
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNK---- 173 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~---- 173 (408)
.+.....+..+..+... |..++..|+.+.+.. .....+... +++...+..|+..+.- +--+|+..+..|+.-
T Consensus 726 ~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~e-kvl~i~ld~Lkdedsy-vyLnaI~gv~~Lcevy~e~ 802 (982)
T KOG4653|consen 726 IEPLQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGE-KVLAIALDTLKDEDSY-VYLNAIRGVVSLCEVYPED 802 (982)
T ss_pred HHHHHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHH-HHHHHHHHHhcccCce-eeHHHHHHHHHHHHhcchh
Confidence 55677777778777666 999999999998753 334445555 8899999999876511 113344433333210
Q ss_pred ----ccc-hHH----------------HHHHHhcc-------CcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcch-
Q 036338 174 ----IED-QQH----------------LMNLILKR-------DQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADS- 224 (408)
Q Consensus 174 ----~~~-~~~----------------~~~~i~~~-------~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~- 224 (408)
..+ ..+ +-+.+... .+-.+..++.-++.+ +.+.|..+...+++|+.--..
T Consensus 803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrep-d~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREP-DHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCc-hHHHHHhHHHHHHHHHHHHhhh
Confidence 000 000 00011000 001122333333444 566677788888888753221
Q ss_pred -hhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc
Q 036338 225 -KVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR 266 (408)
Q Consensus 225 -~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~ 266 (408)
-..+. .++..++.+.+.+.++.++++|+..|..+-.+.+
T Consensus 882 vsd~~~---ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 882 VSDFFH---EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred hhHHHH---HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccc
Confidence 11222 2455566666655588899999999988866543
No 360
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=60.52 E-value=54 Score=31.70 Aligned_cols=120 Identities=9% Similarity=0.140 Sum_probs=87.7
Q ss_pred HHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhc--CCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHH
Q 036338 161 KQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQ--QESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAET 238 (408)
Q Consensus 161 e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~--~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~L 238 (408)
--|+..|.++.. +.+. |.++.. +.-.-..++.++++ | ..+.|-+...+++.|+.+++..+.|-.....|.-|
T Consensus 167 lfav~cl~~l~~---~~e~-R~i~wa-entcs~r~~e~l~n~vg-~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dl 240 (432)
T COG5231 167 LFAVSCLSNLEF---DVEK-RKIEWA-ENTCSRRFMEILQNYVG-VKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDL 240 (432)
T ss_pred HHHHHHHhhhhh---hHHH-HHHHHH-HhhHHHHHHHHHHhhhh-hhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 557777888775 4454 555542 44556778888876 5 67889999999999999888776665545678888
Q ss_pred HHhcccCCCHHHHHHHHHHHHHhccC--cchHHHHHhcCcHHHHHHHhcc
Q 036338 239 VKSLSLDSDRRLIEASLSCLITISSS--KRAKTKLINHKLITELGKLITD 286 (408)
Q Consensus 239 v~lL~~~~~~~~~~~A~~aL~~Ls~~--~~n~~~~~~~G~i~~Lv~lL~~ 286 (408)
+++++...-..+.+-.++.+.|++.- ......+.-.|-+.+-+++|..
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~e 290 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLE 290 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHh
Confidence 99988654557888889999999872 3466667777767777777764
No 361
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.78 E-value=2.9e+02 Score=30.89 Aligned_cols=133 Identities=13% Similarity=0.144 Sum_probs=83.4
Q ss_pred cccHHHHHHHHhc------C-CChHHHHHHHHHHHHhhcC----cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338 189 QDCLNSLLLVLKQ------Q-ESVDSRIESLRLLEFIAGD----ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC 257 (408)
Q Consensus 189 ~g~i~~Lv~lL~~------~-~~~~~~~~Aa~~L~~La~~----~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a 257 (408)
.|.++.++..|.+ . .+...+..|..++++|+.. ...+..+.. =.+..+.-.++++ ..-.+..|++.
T Consensus 409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~--flv~hVfP~f~s~-~g~Lrarac~v 485 (1010)
T KOG1991|consen 409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEY--FLVNHVFPEFQSP-YGYLRARACWV 485 (1010)
T ss_pred hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHH--HHHHHhhHhhcCc-hhHHHHHHHHH
Confidence 5788899999872 1 1456677788888888742 223333321 1334444455665 66789999999
Q ss_pred HHHhccCc-chHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHHh
Q 036338 258 LITISSSK-RAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQGRMEICQ 335 (408)
Q Consensus 258 L~~Ls~~~-~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~ 335 (408)
+..+|.-+ .+...+. .++......|.+ +.+..++..|+-+|..+-. ++.+..++..
T Consensus 486 l~~~~~~df~d~~~l~--~ale~t~~~l~~--------------------d~~lPV~VeAalALq~fI~~~~~~~e~~~~ 543 (1010)
T KOG1991|consen 486 LSQFSSIDFKDPNNLS--EALELTHNCLLN--------------------DNELPVRVEAALALQSFISNQEQADEKVSA 543 (1010)
T ss_pred HHHHHhccCCChHHHH--HHHHHHHHHhcc--------------------CCcCchhhHHHHHHHHHHhcchhhhhhHhh
Confidence 99999422 2222111 133444555542 2377888888888888865 4556566766
Q ss_pred hcCchHHHHHHHHH
Q 036338 336 DAALLNGVVQKMLK 349 (408)
Q Consensus 336 ~~g~i~~lv~~l~~ 349 (408)
+ ||.+++.|+.
T Consensus 544 h---vp~~mq~lL~ 554 (1010)
T KOG1991|consen 544 H---VPPIMQELLK 554 (1010)
T ss_pred h---hhHHHHHHHH
Confidence 5 7777777776
No 362
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.23 E-value=6.4 Score=40.06 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=30.3
Q ss_pred CCcccccCccccCCC-ceecCCCCcccHhhHHHHHhc
Q 036338 11 PSFFRCPISLDVMKS-PVSLCTGVTYDRASIQRWLDS 46 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~d-Pv~~~cgh~f~r~cI~~~~~~ 46 (408)
.....|.||.+-..+ .+.+.|||.||..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 345789999998886 666789999999999999864
No 363
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=59.17 E-value=7.9 Score=41.24 Aligned_cols=8 Identities=25% Similarity=0.517 Sum_probs=4.2
Q ss_pred CCCCcccc
Q 036338 50 TCPATMQV 57 (408)
Q Consensus 50 ~CP~~~~~ 57 (408)
+||.|+.+
T Consensus 43 fC~~CG~~ 50 (645)
T PRK14559 43 HCPNCGAE 50 (645)
T ss_pred cccccCCc
Confidence 45555544
No 364
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=58.39 E-value=60 Score=32.06 Aligned_cols=93 Identities=23% Similarity=0.227 Sum_probs=65.3
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHH-HHHHHHhccCcchHHH
Q 036338 192 LNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEAS-LSCLITISSSKRAKTK 270 (408)
Q Consensus 192 i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A-~~aL~~Ls~~~~n~~~ 270 (408)
|..+++-|..+.+..+|..++.-|..-+.+++.+..+.. .|.+..+++.+.+..+.....-+ +.+++-|+....+-..
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra-~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRA-HGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHH-cCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 555666666443678888888888888889999999987 89999999999653233244444 4444455555555555
Q ss_pred HHhcCcHHHHHHHhc
Q 036338 271 LINHKLITELGKLIT 285 (408)
Q Consensus 271 ~~~~G~i~~Lv~lL~ 285 (408)
+...+....++.++.
T Consensus 102 ~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLK 116 (361)
T ss_pred hhchhHHHHHHHHhc
Confidence 556677777788887
No 365
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=58.03 E-value=5.8 Score=24.67 Aligned_cols=9 Identities=22% Similarity=0.493 Sum_probs=7.0
Q ss_pred CCCCCcccc
Q 036338 49 NTCPATMQV 57 (408)
Q Consensus 49 ~~CP~~~~~ 57 (408)
..||.|+.+
T Consensus 19 ~~CP~Cg~~ 27 (34)
T cd00729 19 EKCPICGAP 27 (34)
T ss_pred CcCcCCCCc
Confidence 479999864
No 366
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=57.75 E-value=2.2e+02 Score=30.64 Aligned_cols=132 Identities=17% Similarity=0.187 Sum_probs=86.0
Q ss_pred cccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchH
Q 036338 189 QDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAK 268 (408)
Q Consensus 189 ~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~ 268 (408)
..++|.|.+-++.. +...|+.+...+-.++..-| ...+. .-++|.|-.+....++..++.+++-++..+.
T Consensus 388 ~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD--~~~vk-~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~------ 457 (700)
T KOG2137|consen 388 EKILPLLYRSLEDS-DVQIQELALQILPTVAESID--VPFVK-QAILPRLKNLAFKTTNLYVKVNVLPCLAGLI------ 457 (700)
T ss_pred HHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc--HHHHH-HHHHHHhhcchhcccchHHHHHHHHHHHHHH------
Confidence 45677788777777 88999999999998887655 22223 3466766666544457889999999999888
Q ss_pred HHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHH
Q 036338 269 TKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKML 348 (408)
Q Consensus 269 ~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~ 348 (408)
+.+-.+-+++.+.-++..- ...++.++-..+.+..++.....++..+..+ ..+|.++-+..
T Consensus 458 q~lD~~~v~d~~lpi~~~~------------------~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~-~VlPlli~ls~ 518 (700)
T KOG2137|consen 458 QRLDKAAVLDELLPILKCI------------------KTRDPAIVMGFLRIYEALALIIYSGVEVMAE-NVLPLLIPLSV 518 (700)
T ss_pred HHHHHHHhHHHHHHHHHHh------------------cCCCcHHHHHHHHHHHHHHhhcccceeeehh-hhhhhhhhhhh
Confidence 2222333444444444331 0237888888888888887644443333333 67887777544
Q ss_pred H
Q 036338 349 K 349 (408)
Q Consensus 349 ~ 349 (408)
+
T Consensus 519 ~ 519 (700)
T KOG2137|consen 519 A 519 (700)
T ss_pred c
Confidence 4
No 367
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.17 E-value=59 Score=31.25 Aligned_cols=109 Identities=15% Similarity=0.140 Sum_probs=71.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHH
Q 036338 193 NSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKL 271 (408)
Q Consensus 193 ~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~ 271 (408)
...++.|.+. +.+.+..+...|..|+... +...... ...|..+++-+++. -..+.++|+.++..+.++-.+.-.-
T Consensus 91 ~~~l~~L~s~-dW~~~vdgLn~irrLs~fh~e~l~~~L--~~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~ 166 (334)
T KOG2933|consen 91 KQALKKLSSD-DWEDKVDGLNSIRRLSEFHPESLNPML--HEVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQ 166 (334)
T ss_pred HHHHHHhchH-HHHHHhhhHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566777 7888888888888887654 2222222 34678888888886 6689999999999887765443332
Q ss_pred HhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338 272 INHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT 326 (408)
Q Consensus 272 ~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~ 326 (408)
..+.++..|... +..+..-+.+.|-.+|..+..+
T Consensus 167 ----~ld~lv~~Ll~k-----------------a~~dnrFvreda~kAL~aMV~~ 200 (334)
T KOG2933|consen 167 ----ELDDLVTQLLHK-----------------ASQDNRFVREDAEKALVAMVNH 200 (334)
T ss_pred ----HHHHHHHHHHhh-----------------hcccchHHHHHHHHHHHHHHhc
Confidence 344455444322 1133567889999999888764
No 368
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=57.12 E-value=76 Score=26.71 Aligned_cols=72 Identities=19% Similarity=0.193 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhC-hhhhhhhhhcCChHHHHHHHhhcC-----cchhhHHHHHHHHHHhc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKES-DENKTFLAKFDGLVVMLVEILSNV-----NDVNMLKQVIRVLDLIL 171 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~-~~~r~~i~~~~G~i~~Lv~lL~s~-----~~~~~~e~A~~~L~~L~ 171 (408)
.+.++.+.++|++.++. +..|+..|..+++.. ......|.+. +.+.-|++++... .+..+.+.++..+..-+
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~-~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKF-RFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhH-HHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 67899999999999987 999999999998864 4567778877 8999999999641 14455577777766543
No 369
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=56.89 E-value=10 Score=30.28 Aligned_cols=43 Identities=12% Similarity=0.192 Sum_probs=31.4
Q ss_pred ccccCccccCCCceecC--------C---CCcccHhhHHHHHhc--------CCCCCCCccc
Q 036338 14 FRCPISLDVMKSPVSLC--------T---GVTYDRASIQRWLDS--------GNNTCPATMQ 56 (408)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~--------c---gh~f~r~cI~~~~~~--------~~~~CP~~~~ 56 (408)
.+|..|.+--.|+.+.. | .-.||..||..++.+ .+..||.|+-
T Consensus 8 ~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 8 KTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 46888888766666543 3 667999999998753 3357999975
No 370
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=56.70 E-value=15 Score=37.55 Aligned_cols=70 Identities=21% Similarity=0.241 Sum_probs=49.6
Q ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHH-hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchH
Q 036338 235 LAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLI-NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLIT 313 (408)
Q Consensus 235 i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (408)
+..+.+.+-.+.++++++.|..++.+++...+||...+ ....-..++.++..+ .+.+-
T Consensus 329 ~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~---------------------~~~~~ 387 (763)
T KOG4231|consen 329 MLKALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTP---------------------EPRVN 387 (763)
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccc---------------------ccccc
Confidence 33344444444588999999999999999999998777 344556777777654 55666
Q ss_pred HHHHHHHHHHhC
Q 036338 314 EKALRLVEILST 325 (408)
Q Consensus 314 ~~a~~~L~~L~~ 325 (408)
+.+..+|..+-.
T Consensus 388 ~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 388 KAAARALAILGE 399 (763)
T ss_pred hhhhHHHHHhhh
Confidence 666666666654
No 371
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=54.77 E-value=1.3e+02 Score=25.17 Aligned_cols=73 Identities=18% Similarity=0.219 Sum_probs=48.9
Q ss_pred HHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChH---HHHHHHHHHHHhhc
Q 036338 144 VVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVD---SRIESLRLLEFIAG 220 (408)
Q Consensus 144 i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~---~~~~Aa~~L~~La~ 220 (408)
+..|..-|.+.+ ..++..|+.+|-.+.. +....++..+. +..++..|.+++.+..... +|..+..+|...+.
T Consensus 44 ~~~l~krl~~~~-~~vq~~aL~lld~lvk--Ncg~~f~~ev~--~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 44 ARALRKRLKHGN-PNVQLLALTLLDALVK--NCGPRFHREVA--SKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHTTSS-HHHHHHHHHHHHHHHH--HSHHHHHHHHT--SHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHHHH--cCCHHHHHHHh--HHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 444566666654 3344777777777765 44344566776 7789999999888652444 78888888887764
Q ss_pred C
Q 036338 221 D 221 (408)
Q Consensus 221 ~ 221 (408)
.
T Consensus 119 ~ 119 (140)
T PF00790_consen 119 A 119 (140)
T ss_dssp H
T ss_pred H
Confidence 3
No 372
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.58 E-value=70 Score=26.22 Aligned_cols=87 Identities=11% Similarity=0.147 Sum_probs=41.4
Q ss_pred cccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC-CCCCCCCCCCCCCCccCHHHHHHHHHHHhcC
Q 036338 34 TYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ-HRVDSSESATGRPVVLSQDEVKDIIRVAISK 112 (408)
Q Consensus 34 ~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~ 112 (408)
.||..|=+.-+- .||.|..++..+..+.. .....+ -..|+....-+.+.+|++..|...+++...+
T Consensus 29 afcskcgeati~----qcp~csasirgd~~veg---------vlglg~dye~psfchncgs~fpwterkiaga~elvea~ 95 (160)
T COG4306 29 AFCSKCGEATIT----QCPICSASIRGDYYVEG---------VLGLGGDYEPPSFCHNCGSRFPWTERKIAGAVELVEAG 95 (160)
T ss_pred HHHhhhchHHHh----cCCccCCcccccceeee---------eeccCCCCCCcchhhcCCCCCCcHHHHHhHHHHHHHcc
Confidence 366666444333 49999877654432221 111111 1222222222223345555666556655544
Q ss_pred ---Chh-HHHHHHHHHHHhhhChhh
Q 036338 113 ---NED-FSENLTKIVAFAKESDEN 133 (408)
Q Consensus 113 ---~~~-~~~Al~~L~~la~~~~~~ 133 (408)
+++ ..+--..|-.|.++++..
T Consensus 96 ~~l~pdevqqf~tdlt~ltkdspkt 120 (160)
T COG4306 96 ENLNPDEVQQFRTDLTDLTKDSPKT 120 (160)
T ss_pred ccCCHHHHHHHHhhHHHHhhcCchh
Confidence 334 445555666676666543
No 373
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=54.48 E-value=4 Score=22.40 Aligned_cols=13 Identities=31% Similarity=0.754 Sum_probs=7.8
Q ss_pred ccccCccccCCCc
Q 036338 14 FRCPISLDVMKSP 26 (408)
Q Consensus 14 ~~Cpi~~~~~~dP 26 (408)
|.||+|...|.++
T Consensus 1 y~C~~C~~~f~~~ 13 (23)
T PF00096_consen 1 YKCPICGKSFSSK 13 (23)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCccCCH
Confidence 3566666666554
No 374
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=54.34 E-value=10 Score=34.50 Aligned_cols=53 Identities=15% Similarity=0.185 Sum_probs=30.8
Q ss_pred CCcccccCccccCCCceecCCCCcccHhhHH--HHHhcCC------CCCCCcccccCCCCC
Q 036338 11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQ--RWLDSGN------NTCPATMQVLQSKEF 63 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~--~~~~~~~------~~CP~~~~~l~~~~l 63 (408)
.....||+|...|.-.-+.+.+-...+.=-. ...+.-+ .+||.|+-.....++
T Consensus 3 ~k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~~F 63 (214)
T PF09986_consen 3 DKKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEEDF 63 (214)
T ss_pred CCceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccccc
Confidence 3568899999999998766544433211000 0011111 369999977655544
No 375
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=53.27 E-value=9 Score=28.27 Aligned_cols=44 Identities=14% Similarity=0.258 Sum_probs=28.1
Q ss_pred CCCCCcccccCCCCCccc--HHHHHHHHHHHHhcCCCCCCCCCCCC
Q 036338 49 NTCPATMQVLQSKEFVPN--RTLQRLIQIWSDSVQHRVDSSESATG 92 (408)
Q Consensus 49 ~~CP~~~~~l~~~~l~~n--~~l~~~I~~~~~~~~~~~~~~~~~~~ 92 (408)
+.||.|+..+.+..+.|. ..-+..|++|..+++...|.+..+++
T Consensus 5 f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~ 50 (73)
T PF04564_consen 5 FLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLS 50 (73)
T ss_dssp GB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S
T ss_pred cCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC
Confidence 469999988776555443 23488899999996666777666654
No 376
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.70 E-value=6.3 Score=30.15 Aligned_cols=13 Identities=15% Similarity=0.583 Sum_probs=11.4
Q ss_pred cccHhhHHHHHhc
Q 036338 34 TYDRASIQRWLDS 46 (408)
Q Consensus 34 ~f~r~cI~~~~~~ 46 (408)
-|||.|+.+|+..
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999875
No 377
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=52.35 E-value=1.8e+02 Score=27.34 Aligned_cols=144 Identities=13% Similarity=0.144 Sum_probs=81.9
Q ss_pred HHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhccc-ccchHHHHHHH
Q 036338 108 VAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNK-IEDQQHLMNLI 184 (408)
Q Consensus 108 ~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~-~~~~~~~~~~i 184 (408)
.|.+.+.. |.+|+..|......-+... +-+ .-+..|+.++.+.- |......++..|..|... ....+...
T Consensus 7 ~Ltsed~~~R~ka~~~Ls~vL~~lp~~~--L~~--~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~--- 79 (262)
T PF14500_consen 7 YLTSEDPIIRAKALELLSEVLERLPPDF--LSR--QEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAV--- 79 (262)
T ss_pred hhCCCCHHHHHHHHHHHHHHHHhCCHhh--ccH--HHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHH---
Confidence 35555655 8889998888876544322 222 34566777765543 333445555555555420 01111101
Q ss_pred hccCcccHHHHHHHH--hcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 036338 185 LKRDQDCLNSLLLVL--KQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITI 261 (408)
Q Consensus 185 ~~~~~g~i~~Lv~lL--~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~L 261 (408)
..+..+.+-. ++- ....|...-.+|..|..+. +.-..++ .+++..+++++..+.||+..-.+-..+..+
T Consensus 80 -----~i~~~l~~~~~~q~~-~q~~R~~~~~ll~~l~~~~~~~l~~~~--~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i 151 (262)
T PF14500_consen 80 -----KILRSLFQNVDVQSL-PQSTRYAVYQLLDSLLENHREALQSMG--DDFVYGFIQLIDGEKDPRNLLLSFKLLKVI 151 (262)
T ss_pred -----HHHHHHHHhCChhhh-hHHHHHHHHHHHHHHHHHhHHHHHhch--hHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 1122222211 122 4456777777888776553 2233333 468899999999888999988888888877
Q ss_pred ccCcc
Q 036338 262 SSSKR 266 (408)
Q Consensus 262 s~~~~ 266 (408)
...-+
T Consensus 152 ~~~~~ 156 (262)
T PF14500_consen 152 LQEFD 156 (262)
T ss_pred HHhcc
Confidence 66544
No 378
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=52.08 E-value=2.1e+02 Score=26.91 Aligned_cols=133 Identities=18% Similarity=0.206 Sum_probs=80.2
Q ss_pred HHHHHHHHHhcCC-----hhHHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc--c-hhhHHHHHHHHHHhcc
Q 036338 101 EVKDIIRVAISKN-----EDFSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN--D-VNMLKQVIRVLDLILN 172 (408)
Q Consensus 101 ~i~~Lv~~L~s~~-----~~~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~--~-~~~~e~A~~~L~~L~~ 172 (408)
-+|.++..+..++ .+..+.+..|..++.... . ..+..++....... + .+.+..++..|..--.
T Consensus 112 ~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~-~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~ 182 (262)
T PF14225_consen 112 LLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------L-PNLARILSSYAKGRFRDKDDFLSQVVSYLREAFF 182 (262)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------C-ccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhC
Confidence 3456666666555 225567777877774321 1 23333344443333 2 2234445555543211
Q ss_pred cccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHH
Q 036338 173 KIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIE 252 (408)
Q Consensus 173 ~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 252 (408)
.+. +...+..|+.+|.++ ....|.....+|..+-..-+.+...+ .+.+.+|.++|+++ .-.
T Consensus 183 --P~~----------~~~~l~~Ll~lL~n~-~~w~~~~~L~iL~~ll~~~d~~~~~~--~dlispllrlL~t~----~~~ 243 (262)
T PF14225_consen 183 --PDH----------EFQILTFLLGLLENG-PPWLRRKTLQILKVLLPHVDMRSPHG--ADLISPLLRLLQTD----LWM 243 (262)
T ss_pred --chh----------HHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhccccCCCCcc--hHHHHHHHHHhCCc----cHH
Confidence 111 234567799999999 99999999999999987766555554 46899999999875 333
Q ss_pred HHHHHHHHh
Q 036338 253 ASLSCLITI 261 (408)
Q Consensus 253 ~A~~aL~~L 261 (408)
.|+..|-+.
T Consensus 244 eAL~VLd~~ 252 (262)
T PF14225_consen 244 EALEVLDEI 252 (262)
T ss_pred HHHHHHHHH
Confidence 455555443
No 379
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=51.21 E-value=6.4 Score=26.87 Aligned_cols=14 Identities=21% Similarity=0.522 Sum_probs=11.4
Q ss_pred CCCCCcccccCccc
Q 036338 8 ITVPSFFRCPISLD 21 (408)
Q Consensus 8 ~~~~~~~~Cpi~~~ 21 (408)
.++|+++.||+|+.
T Consensus 29 ~~Lp~~w~CP~C~a 42 (50)
T cd00730 29 EDLPDDWVCPVCGA 42 (50)
T ss_pred hHCCCCCCCCCCCC
Confidence 35899999999974
No 380
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=51.19 E-value=14 Score=31.44 Aligned_cols=23 Identities=26% Similarity=0.655 Sum_probs=16.3
Q ss_pred CCCCcccHhhHHHHHhc----------CCCCCCCcccc
Q 036338 30 CTGVTYDRASIQRWLDS----------GNNTCPATMQV 57 (408)
Q Consensus 30 ~cgh~f~r~cI~~~~~~----------~~~~CP~~~~~ 57 (408)
.+||.|+ -||.+ |--.||+|+..
T Consensus 9 ~~gH~FE-----gWF~ss~~fd~Q~~~glv~CP~Cgs~ 41 (148)
T PF06676_consen 9 ENGHEFE-----GWFRSSAAFDRQQARGLVSCPVCGST 41 (148)
T ss_pred CCCCccc-----eecCCHHHHHHHHHcCCccCCCCCCC
Confidence 4899994 57643 34579999854
No 381
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=51.02 E-value=2.2e+02 Score=26.87 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=19.4
Q ss_pred ChHHHHHHHhhcCc-chhhHHHHHHHHHHh
Q 036338 142 GLVVMLVEILSNVN-DVNMLKQVIRVLDLI 170 (408)
Q Consensus 142 G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L 170 (408)
.+||.|+..|...+ .+-+..+|..+|..+
T Consensus 67 ~Av~~l~~vl~desq~pmvRhEAaealga~ 96 (289)
T KOG0567|consen 67 DAVPVLVEVLLDESQEPMVRHEAAEALGAI 96 (289)
T ss_pred hhhHHHHHHhcccccchHHHHHHHHHHHhh
Confidence 67888888887666 333346677777665
No 382
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=49.71 E-value=57 Score=27.87 Aligned_cols=50 Identities=20% Similarity=0.132 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc
Q 036338 205 VDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR 266 (408)
Q Consensus 205 ~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~ 266 (408)
.-.+..|..+|+.|- |- --|.+||++|.+. +......|+.+|.+--.-.+
T Consensus 77 ~Is~~~Av~LLGtM~---------GG--YNV~~LI~~L~~~-d~~lA~~Aa~aLk~TlLvyD 126 (154)
T PF11791_consen 77 LISPAEAVELLGTML---------GG--YNVQPLIDLLKSD-DEELAEEAAEALKNTLLVYD 126 (154)
T ss_dssp TB-HHHHHHHHTTS----------SS--TTHHHHHHGG--G--TTTHHHHHHHHHT--TTCC
T ss_pred CcCHHHHHHHHhhcc---------CC--CcHHHHHHHHcCC-cHHHHHHHHHHHHhhHHHHh
Confidence 345566666665543 11 1489999999775 77899999999998655433
No 383
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=48.48 E-value=49 Score=26.80 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=34.1
Q ss_pred hHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhc
Q 036338 234 LLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINH 274 (408)
Q Consensus 234 ~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~ 274 (408)
+|+.||+-|.+. ++++...|..+|...|..+.....++..
T Consensus 9 ~i~lLv~QL~D~-~~~V~~~A~~iL~e~c~~~~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDP-SPEVVAAALEILEEACEDKEYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhchhhHHHHHHc
Confidence 589999999997 8899999999999999988666666643
No 384
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=47.78 E-value=15 Score=32.39 Aligned_cols=37 Identities=19% Similarity=0.547 Sum_probs=28.5
Q ss_pred CcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccc
Q 036338 12 SFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQV 57 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~ 57 (408)
.-++||-|+++|-|-+ |-=-+.+|.+|+.. ||.-...
T Consensus 86 kIYICPFTGKVF~DNt-----~~nPQDAIYDWvSk----CPeN~ER 122 (238)
T PF10915_consen 86 KIYICPFTGKVFGDNT-----HPNPQDAIYDWVSK----CPENTER 122 (238)
T ss_pred eEEEcCCcCccccCCC-----CCChHHHHHHHHhh----CCccchh
Confidence 4488999999999865 33457999999984 9986543
No 385
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.75 E-value=4.1e+02 Score=29.02 Aligned_cols=63 Identities=10% Similarity=0.071 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHH
Q 036338 101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDL 169 (408)
Q Consensus 101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~ 169 (408)
-++.+...|...+.- |.+|.-++..+-+..+. .+. .+=+.+-++|....+....++|.-.|..
T Consensus 135 l~p~IracleHrhsYVRrNAilaifsIyk~~~~---L~p---DapeLi~~fL~~e~DpsCkRNAFi~L~~ 198 (948)
T KOG1058|consen 135 LMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH---LIP---DAPELIESFLLTEQDPSCKRNAFLMLFT 198 (948)
T ss_pred hHHHHHHHHhCcchhhhhhhheeehhHHhhhhh---hcC---ChHHHHHHHHHhccCchhHHHHHHHHHh
Confidence 345555666666665 77877777666554221 122 2233344444443334344555544443
No 386
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=47.63 E-value=7.9 Score=26.06 Aligned_cols=15 Identities=20% Similarity=0.600 Sum_probs=9.3
Q ss_pred CCCCCCcccccCccc
Q 036338 7 YITVPSFFRCPISLD 21 (408)
Q Consensus 7 ~~~~~~~~~Cpi~~~ 21 (408)
..++|+++.||+|.-
T Consensus 28 F~~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 28 FEDLPDDWVCPVCGA 42 (47)
T ss_dssp GGGS-TT-B-TTTSS
T ss_pred HHHCCCCCcCcCCCC
Confidence 346899999999974
No 387
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=47.54 E-value=17 Score=31.97 Aligned_cols=52 Identities=21% Similarity=0.371 Sum_probs=29.0
Q ss_pred CCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCC-cccHHHHHHHHHHHH
Q 036338 11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEF-VPNRTLQRLIQIWSD 78 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l-~~n~~l~~~I~~~~~ 78 (408)
+..|.||-|+.-+ ||.- + .. ..+.||.|+.++...+- .--..|++.|.....
T Consensus 115 ~~~Y~Cp~C~~ry----------tf~e-A----~~-~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~ 167 (178)
T PRK06266 115 NMFFFCPNCHIRF----------TFDE-A----ME-YGFRCPQCGEMLEEYDNSELIKELKEQIKELEE 167 (178)
T ss_pred CCEEECCCCCcEE----------eHHH-H----hh-cCCcCCCCCCCCeecccHHHHHHHHHHHHHHHH
Confidence 3567888876322 2332 1 22 46889999988765331 112345555555543
No 388
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=47.46 E-value=2e+02 Score=25.33 Aligned_cols=152 Identities=20% Similarity=0.200 Sum_probs=85.5
Q ss_pred HHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc
Q 036338 144 VVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD 223 (408)
Q Consensus 144 i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~ 223 (408)
++.++++..+.+ .++...|+.++..+.. +.++. -.-.+|.|+.+..++ +..++..|...+..+....+
T Consensus 10 l~~Il~~~~~~~-~~vr~~Al~~l~~il~--------qGLvn--P~~cvp~lIAL~ts~-~~~ir~~A~~~l~~l~eK~~ 77 (187)
T PF12830_consen 10 LKNILELCLSSD-DSVRLAALQVLELILR--------QGLVN--PKQCVPTLIALETSP-NPSIRSRAYQLLKELHEKHE 77 (187)
T ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHHHh--------cCCCC--hHHHHhHhhhhhCCC-ChHHHHHHHHHHHHHHHHhH
Confidence 444555555544 2233666666655432 12221 234689999998888 99999999999999986654
Q ss_pred hhhHHhhhcChHHHHHHhccc-CCCHH--H---HHHHHHHHHHhcc-CcchHHHHHhcCcHHHHHHHhccCCCCCCCCCC
Q 036338 224 SKVKIAERDGLLAETVKSLSL-DSDRR--L---IEASLSCLITISS-SKRAKTKLINHKLITELGKLITDGHNGNGSGNG 296 (408)
Q Consensus 224 ~~~~i~~~~g~i~~Lv~lL~~-~~~~~--~---~~~A~~aL~~Ls~-~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~ 296 (408)
+-..-.-.. ++..-.++-+. ..+.. . ...-.+-|+.+.. +..+|.+++ ..|+..+.... ...
T Consensus 78 s~v~~~~~~-gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl-----~~l~k~f~~~~-~~~---- 146 (187)
T PF12830_consen 78 SLVESRYSE-GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFL-----KSLLKQFDFDL-TKL---- 146 (187)
T ss_pred HHHHHHHHH-HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHH-----HHHHHHHHhhc-ccc----
Confidence 332222212 23333333221 00111 1 5667788888877 445777764 56777776520 000
Q ss_pred CCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338 297 NGNGNGNGSGNGTVLITEKALRLVEILSTT 326 (408)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~ 326 (408)
..+....-.....-+..||+.-
T Consensus 147 --------~~~~~~~~l~~~~Fla~nLA~l 168 (187)
T PF12830_consen 147 --------SSESSPSDLDFLLFLAENLATL 168 (187)
T ss_pred --------ccccchhHHHHHHHHHHHHhcC
Confidence 0122445556677777777753
No 389
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=47.37 E-value=9.6 Score=35.63 Aligned_cols=50 Identities=20% Similarity=0.400 Sum_probs=30.7
Q ss_pred CCcccccCccccCCC-------------ceec-CCCCcccHhhHHH-HHhc--C--CCCCCCcccccCC
Q 036338 11 PSFFRCPISLDVMKS-------------PVSL-CTGVTYDRASIQR-WLDS--G--NNTCPATMQVLQS 60 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~d-------------Pv~~-~cgh~f~r~cI~~-~~~~--~--~~~CP~~~~~l~~ 60 (408)
+..|.|+.|.+++.. |-.- -||.-|.|..+.+ .+.. | .+.||.|++.|.+
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFAD 227 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFAD 227 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcc
Confidence 566889999888765 3222 2667776664433 2221 2 2569999887754
No 390
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=47.18 E-value=8.9 Score=32.80 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=17.9
Q ss_pred CcccccCccccCCCceecCCC
Q 036338 12 SFFRCPISLDVMKSPVSLCTG 32 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~cg 32 (408)
++.+||||.+.-.+.|.+-|.
T Consensus 1 ed~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CCccCceeccCCCceEEEEec
Confidence 467899999999999998653
No 391
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=47.05 E-value=2.3e+02 Score=25.95 Aligned_cols=138 Identities=17% Similarity=0.172 Sum_probs=78.4
Q ss_pred HHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcch
Q 036338 145 VMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADS 224 (408)
Q Consensus 145 ~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~ 224 (408)
+.|+.-+....+.+.+...+..|..++. ++... ..-++..|..+...+ +.+.+.-+.+.+..+-...+-
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~--~~~~~--------~~~v~~~L~~L~~~~-~~~~~~~~~rLl~~lw~~~~r 71 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLAC--HKNVC--------VPPVLQTLVSLVEQG-SLELRYVALRLLTLLWKANDR 71 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhc--cCccc--------hhHHHHHHHHHHcCC-chhHHHHHHHHHHHHHHhCch
Confidence 4444434333345556778888888876 44111 122356666666666 666555555666655443321
Q ss_pred hhHHhhhcChHHHHHHh--c------ccC-CCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHh-ccCCCCCCCC
Q 036338 225 KVKIAERDGLLAETVKS--L------SLD-SDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLI-TDGHNGNGSG 294 (408)
Q Consensus 225 ~~~i~~~~g~i~~Lv~l--L------~~~-~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL-~~~~~~~~~~ 294 (408)
.+ +.+.+++.. + .++ ...+..-..+.+++.+|...++ --...++.|-+.| ++
T Consensus 72 ---~f---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~-------- 133 (234)
T PF12530_consen 72 ---HF---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQS-------- 133 (234)
T ss_pred ---HH---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhcc--------
Confidence 11 334444444 1 111 1234445556788888887666 2233567777777 43
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHHHHHHh
Q 036338 295 NGNGNGNGNGSGNGTVLITEKALRLVEILS 324 (408)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~ 324 (408)
.+..++..++.+|..|+
T Consensus 134 -------------~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 134 -------------CDEVAQALALEALAPLC 150 (234)
T ss_pred -------------ccHHHHHHHHHHHHHHH
Confidence 36788899999999998
No 392
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=46.92 E-value=51 Score=34.38 Aligned_cols=46 Identities=15% Similarity=0.230 Sum_probs=34.6
Q ss_pred cChHHHHHHh-cccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhcc
Q 036338 232 DGLLAETVKS-LSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITD 286 (408)
Q Consensus 232 ~g~i~~Lv~l-L~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~ 286 (408)
.|++..|+.. +.++ +.+++++|+-||.-.|..+.+ .++..|++|+.
T Consensus 550 ~~vv~~lLh~avsD~-nDDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~ 596 (926)
T COG5116 550 LGVVSTLLHYAVSDG-NDDVRRAAVIALGFVCCDDRD--------LLVGTVELLSE 596 (926)
T ss_pred chhHhhhheeecccC-chHHHHHHHHheeeeEecCcc--------hhhHHHHHhhh
Confidence 5677777777 5555 779999999999988876542 56677788865
No 393
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=46.81 E-value=8.8 Score=36.38 Aligned_cols=43 Identities=7% Similarity=0.042 Sum_probs=26.5
Q ss_pred cccccCccccCCC-ceecCCCCcccHhhHHHHHhcCCCCCCCccccc
Q 036338 13 FFRCPISLDVMKS-PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVL 58 (408)
Q Consensus 13 ~~~Cpi~~~~~~d-Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l 58 (408)
--+|--|.....- =-+++|.|.||-+|-.. .....||.|..++
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~---~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARS---DSDKICPLCDDRV 133 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhc---CccccCcCcccHH
Confidence 3456666543221 22579999999999432 1234799997553
No 394
>PRK04023 DNA polymerase II large subunit; Validated
Probab=46.70 E-value=18 Score=40.08 Aligned_cols=46 Identities=9% Similarity=-0.039 Sum_probs=29.1
Q ss_pred CcccccCccccCCCceecCCCC-----cccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 12 SFFRCPISLDVMKSPVSLCTGV-----TYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~cgh-----~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
....||-|+....-..--.||. .||..| .+. .+...||.|+.....
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~C--G~~-~~~y~CPKCG~El~~ 675 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRC--GIE-VEEDECEKCGREPTP 675 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccc--cCc-CCCCcCCCCCCCCCc
Confidence 4467999998852222223884 599999 111 234679999987654
No 395
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.64 E-value=37 Score=30.72 Aligned_cols=61 Identities=13% Similarity=0.283 Sum_probs=41.9
Q ss_pred ccccCccccCC--CceecCCCCcccHhhHHHHHhc---C----CCCCCCccccc-CCCCCc-c-cHHHHHHHH
Q 036338 14 FRCPISLDVMK--SPVSLCTGVTYDRASIQRWLDS---G----NNTCPATMQVL-QSKEFV-P-NRTLQRLIQ 74 (408)
Q Consensus 14 ~~Cpi~~~~~~--dPv~~~cgh~f~r~cI~~~~~~---~----~~~CP~~~~~l-~~~~l~-~-n~~l~~~I~ 74 (408)
.-|.+|+..+. |-+-+-|=|-|--.|+.+|-.+ + ...||.|.+++ .+.++. | -..||+...
T Consensus 51 pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsPva~aLre~L~ 123 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVSPVAEALREQLK 123 (299)
T ss_pred CCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccchhHHHHHHHHH
Confidence 45888888775 5777889999999999999754 1 24699998764 444432 2 124555544
No 396
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=46.39 E-value=3.3e+02 Score=32.11 Aligned_cols=139 Identities=9% Similarity=0.109 Sum_probs=78.2
Q ss_pred HHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhh-hhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH
Q 036338 102 VKDIIRVAISKNED-FSENLTKIVAFAKESDENKT-FLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH 179 (408)
Q Consensus 102 i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~-~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~ 179 (408)
+..++..|...... |.+|+++|..++..++.... --++. |+...+ ..+. ..+.|.|+..++.... ...+.
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~-~Vh~R~---~Dss--asVREAaldLvGrfvl--~~~e~ 889 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQE-AVHGRL---NDSS--ASVREAALDLVGRFVL--SIPEL 889 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHH-HHHHhh---ccch--hHHHHHHHHHHhhhhh--ccHHH
Confidence 34555566655555 88999999999876655322 22233 332222 2222 3344999998886554 22221
Q ss_pred HHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHH
Q 036338 180 LMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLI 259 (408)
Q Consensus 180 ~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~ 259 (408)
.. ..-..+....... ...+|.++.++|..++...+.-..+.. +...++.-..++ ...+++-+..++.
T Consensus 890 ~~--------qyY~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf~~i~~---~cakmlrRv~DE-Eg~I~kLv~etf~ 956 (1692)
T KOG1020|consen 890 IF--------QYYDQIIERILDT-GVSVRKRVIKILRDICEETPDFSKIVD---MCAKMLRRVNDE-EGNIKKLVRETFL 956 (1692)
T ss_pred HH--------HHHHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCChhhHHH---HHHHHHHHhccc-hhHHHHHHHHHHH
Confidence 11 1233344445555 789999999999999976554444432 222233333332 2236677777776
Q ss_pred Hh
Q 036338 260 TI 261 (408)
Q Consensus 260 ~L 261 (408)
+|
T Consensus 957 kl 958 (1692)
T KOG1020|consen 957 KL 958 (1692)
T ss_pred HH
Confidence 66
No 397
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=46.24 E-value=1.5e+02 Score=23.42 Aligned_cols=89 Identities=17% Similarity=0.053 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHH
Q 036338 116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSL 195 (408)
Q Consensus 116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~L 195 (408)
|..|+..|..--..+--.-..+.+..+.+..|+.-...+. .-..+.++..|..+.. ++.. ...+. +-|+++.|
T Consensus 4 R~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~--~~~a--~~~l~--~iG~~~fL 76 (98)
T PF14726_consen 4 RVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK--SPYA--AQILR--DIGAVRFL 76 (98)
T ss_pred HHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh--CcHH--HHHHH--HccHHHHH
Confidence 4555555443322222222223322144555555555544 1133888999988887 5544 45665 78888886
Q ss_pred HHHHhcCCChHHHHHHH
Q 036338 196 LLVLKQQESVDSRIESL 212 (408)
Q Consensus 196 v~lL~~~~~~~~~~~Aa 212 (408)
-++=..- +...+...-
T Consensus 77 ~klr~~~-~~~~~~~id 92 (98)
T PF14726_consen 77 SKLRPNV-EPNLQAEID 92 (98)
T ss_pred HHHHhcC-CHHHHHHHH
Confidence 6654433 444444333
No 398
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=45.39 E-value=5.2 Score=26.14 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=14.7
Q ss_pred CCCCcccHhhHHHHHhcCCCCCCCccc
Q 036338 30 CTGVTYDRASIQRWLDSGNNTCPATMQ 56 (408)
Q Consensus 30 ~cgh~f~r~cI~~~~~~~~~~CP~~~~ 56 (408)
.|||.|+... ...+.....||.|+.
T Consensus 10 ~Cg~~fe~~~--~~~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQ--SISEDDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEE--EcCCCCCCcCCCCCC
Confidence 5778886442 111123457999987
No 399
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.99 E-value=3.7 Score=39.27 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=34.9
Q ss_pred ccccCccccCC-C-----ceecC--------CCCcccHhhHHHHHhcCCCCCCCcccc
Q 036338 14 FRCPISLDVMK-S-----PVSLC--------TGVTYDRASIQRWLDSGNNTCPATMQV 57 (408)
Q Consensus 14 ~~Cpi~~~~~~-d-----Pv~~~--------cgh~f~r~cI~~~~~~~~~~CP~~~~~ 57 (408)
-.|.||...+. + |-+.. |||+.|..|+..-.......||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 46888887777 2 77777 999999999999866544789999753
No 400
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.67 E-value=1.6e+02 Score=34.40 Aligned_cols=132 Identities=11% Similarity=0.135 Sum_probs=78.4
Q ss_pred CcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcch
Q 036338 188 DQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRA 267 (408)
Q Consensus 188 ~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n 267 (408)
++..|=.+..|-++......|.-||.=+..++.....+..=.. ...||.|.+.=.++ +..+ +.|..-+||--..+
T Consensus 954 qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l-~kLIPrLyRY~yDP-~~~V-q~aM~sIW~~Li~D-- 1028 (1702)
T KOG0915|consen 954 QPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYL-KKLIPRLYRYQYDP-DKKV-QDAMTSIWNALITD-- 1028 (1702)
T ss_pred ChHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHH-HHhhHHHhhhccCC-cHHH-HHHHHHHHHHhccC--
Confidence 4555666777777665788888898888888765422111111 24678888877776 6555 55666677654432
Q ss_pred HHHHHh---cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHH
Q 036338 268 KTKLIN---HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVV 344 (408)
Q Consensus 268 ~~~~~~---~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv 344 (408)
++.+++ ..+++-|+.-|.+. .=.++|.++-+|..|-..+. ..++.+. +|-+-
T Consensus 1029 ~k~~vd~y~neIl~eLL~~lt~k---------------------ewRVReasclAL~dLl~g~~-~~~~~e~---lpelw 1083 (1702)
T KOG0915|consen 1029 SKKVVDEYLNEILDELLVNLTSK---------------------EWRVREASCLALADLLQGRP-FDQVKEK---LPELW 1083 (1702)
T ss_pred hHHHHHHHHHHHHHHHHHhccch---------------------hHHHHHHHHHHHHHHHcCCC-hHHHHHH---HHHHH
Confidence 223332 23444455545432 45788888888888876432 2233333 55566
Q ss_pred HHHHH
Q 036338 345 QKMLK 349 (408)
Q Consensus 345 ~~l~~ 349 (408)
..++|
T Consensus 1084 ~~~fR 1088 (1702)
T KOG0915|consen 1084 EAAFR 1088 (1702)
T ss_pred HHHHH
Confidence 65666
No 401
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=44.22 E-value=1.1e+02 Score=29.65 Aligned_cols=77 Identities=21% Similarity=0.303 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhhcCcchhhHHhh-hcChHHHHHHhcccC--CCHHHHHHHHHHHHHhccCcchHHHHH-------hcC
Q 036338 206 DSRIESLRLLEFIAGDADSKVKIAE-RDGLLAETVKSLSLD--SDRRLIEASLSCLITISSSKRAKTKLI-------NHK 275 (408)
Q Consensus 206 ~~~~~Aa~~L~~La~~~~~~~~i~~-~~g~i~~Lv~lL~~~--~~~~~~~~A~~aL~~Ls~~~~n~~~~~-------~~G 275 (408)
.+|-.|...|..+......-..+.. ..+++..|+++++-+ ....++..|+.+|-.++....-...++ .+|
T Consensus 237 ~iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HG 316 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHG 316 (329)
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCcc
Confidence 3445566666666666666666665 234999999999853 456899999999999998654333333 245
Q ss_pred cHHHHHH
Q 036338 276 LITELGK 282 (408)
Q Consensus 276 ~i~~Lv~ 282 (408)
.++.++.
T Consensus 317 iL~~llR 323 (329)
T PF06012_consen 317 ILPQLLR 323 (329)
T ss_pred cHHHHHH
Confidence 5555554
No 402
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=44.17 E-value=21 Score=20.68 Aligned_cols=26 Identities=19% Similarity=0.175 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhc
Q 036338 250 LIEASLSCLITISSSKRAKTKLINHKLITELGKLIT 285 (408)
Q Consensus 250 ~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~ 285 (408)
++..|+++|.++.. .-+|++|++.|.
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 46778888887766 237788888775
No 403
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=44.15 E-value=57 Score=26.18 Aligned_cols=39 Identities=10% Similarity=0.172 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccC
Q 036338 249 RLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDG 287 (408)
Q Consensus 249 ~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~ 287 (408)
-........|..|+..++--..+++.|+++.|++||..+
T Consensus 61 ~dLd~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~He 99 (108)
T PF08216_consen 61 VDLDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHE 99 (108)
T ss_pred HHHHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCC
Confidence 345667888999999999888999999999999999864
No 404
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=43.81 E-value=7.9 Score=26.33 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=13.8
Q ss_pred CCCCcccHhhHHHHHhcCCCCCCCccc
Q 036338 30 CTGVTYDRASIQRWLDSGNNTCPATMQ 56 (408)
Q Consensus 30 ~cgh~f~r~cI~~~~~~~~~~CP~~~~ 56 (408)
.|||+|+..- ..-......||.|+.
T Consensus 10 ~Cg~~fe~~~--~~~~~~~~~CP~Cg~ 34 (52)
T TIGR02605 10 ACGHRFEVLQ--KMSDDPLATCPECGG 34 (52)
T ss_pred CCCCEeEEEE--ecCCCCCCCCCCCCC
Confidence 5777776321 111112356999986
No 405
>PLN03086 PRLI-interacting factor K; Provisional
Probab=43.10 E-value=25 Score=36.71 Aligned_cols=51 Identities=16% Similarity=0.256 Sum_probs=27.8
Q ss_pred CCCCcccccCccccCC------------CceecCCCCcccHhhHHHHHhc----CCCCCCCcccccC
Q 036338 9 TVPSFFRCPISLDVMK------------SPVSLCTGVTYDRASIQRWLDS----GNNTCPATMQVLQ 59 (408)
Q Consensus 9 ~~~~~~~Cpi~~~~~~------------dPv~~~cgh~f~r~cI~~~~~~----~~~~CP~~~~~l~ 59 (408)
+++.++.|+.|++.|. .|+.-+||..+.|.-+.+.... ....||.|+..++
T Consensus 449 el~~H~~C~~Cgk~f~~s~LekH~~~~Hkpv~CpCg~~~~R~~L~~H~~thCp~Kpi~C~fC~~~v~ 515 (567)
T PLN03086 449 EAKNHVHCEKCGQAFQQGEMEKHMKVFHEPLQCPCGVVLEKEQMVQHQASTCPLRLITCRFCGDMVQ 515 (567)
T ss_pred ccccCccCCCCCCccchHHHHHHHHhcCCCccCCCCCCcchhHHHhhhhccCCCCceeCCCCCCccc
Confidence 3455667777766553 2433346666666665555432 1134777766553
No 406
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=42.48 E-value=8.6 Score=20.78 Aligned_cols=11 Identities=36% Similarity=0.797 Sum_probs=4.6
Q ss_pred cccCccccCCC
Q 036338 15 RCPISLDVMKS 25 (408)
Q Consensus 15 ~Cpi~~~~~~d 25 (408)
.||+|...|.+
T Consensus 2 ~C~~C~~~~~~ 12 (24)
T PF13894_consen 2 QCPICGKSFRS 12 (24)
T ss_dssp E-SSTS-EESS
T ss_pred CCcCCCCcCCc
Confidence 45555555444
No 407
>PRK07758 hypothetical protein; Provisional
Probab=41.83 E-value=20 Score=27.95 Aligned_cols=31 Identities=23% Similarity=0.360 Sum_probs=18.7
Q ss_pred CCCCcccHhhHHHHHhcCCCCCCCcccccCC-CCCcccH
Q 036338 30 CTGVTYDRASIQRWLDSGNNTCPATMQVLQS-KEFVPNR 67 (408)
Q Consensus 30 ~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~-~~l~~n~ 67 (408)
.-||+|.++. .-++||.|.....+ .++.|-.
T Consensus 11 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~L 42 (95)
T PRK07758 11 EKGHEYYKSS-------DCPTCPTCEKERKPKEGFLSLL 42 (95)
T ss_pred hcccceeccC-------CCCCCcccccccCCCCCCCccc
Confidence 3588887653 34678888765443 4454433
No 408
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=41.75 E-value=6.1e+02 Score=29.35 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=69.5
Q ss_pred HHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhc----
Q 036338 145 VMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAG---- 220 (408)
Q Consensus 145 ~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~---- 220 (408)
+.+...+++-...+...+|+..|..|+..+.++.. + ..++|.++.++... ...+|..|..+|..+-.
T Consensus 425 s~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~----L----DRVlPY~v~l~~Ds-~a~Vra~Al~Tlt~~L~~Vr~ 495 (1431)
T KOG1240|consen 425 SVLTSCIRALKTIQTKLAALELLQELSTYIDDEVK----L----DRVLPYFVHLLMDS-EADVRATALETLTELLALVRD 495 (1431)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHH----H----hhhHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhccC
Confidence 33444443322223447889999888874344332 2 25689999999998 89999999888886643
Q ss_pred CcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338 221 DADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS 263 (408)
Q Consensus 221 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~ 263 (408)
.+.....|.. +-.+|.|-.++.+.....++-+=+..|..|+.
T Consensus 496 ~~~~daniF~-eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~ 537 (1431)
T KOG1240|consen 496 IPPSDANIFP-EYLFPHLNHLLNDSSAQIVRIAYASNLAQLAK 537 (1431)
T ss_pred CCcccchhhH-hhhhhhhHhhhccCccceehhhHHhhHHHHHH
Confidence 2334444554 45789899998874244455555555655543
No 409
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.44 E-value=3.6e+02 Score=26.61 Aligned_cols=81 Identities=16% Similarity=0.174 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc-hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHH
Q 036338 192 LNSLLLVLKQQESVDSRIESLRLLEFIAGDAD-SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTK 270 (408)
Q Consensus 192 i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~ 270 (408)
+..++.+++.. +..-|..++..+.....-.+ ++..+.. +-+.+.-++.+. ++.++..++.+|++.-..+.....
T Consensus 9 ~~~~i~~~~~a-~~~eR~~~A~~l~~~~~~~~~sr~d~~~---~~~l~~~Ll~d~-s~~vrr~lA~aL~~~~~~Pr~l~~ 83 (364)
T COG5330 9 DQDLIRLLEEA-SSGERALAARVLAFASLQRPLSREDMRQ---FEDLARPLLDDS-SEEVRRELAAALAQCETAPRALAR 83 (364)
T ss_pred HHHHHHHhcCC-ChhHHHHHHHHHHHHHhcCcccHHHHHH---HHHHHHHHhhCc-cHHHHHHHHHHHHhCCcCCHHHHH
Confidence 55677788887 78888999999998887776 7777754 234444455554 889999999999998877764444
Q ss_pred HHhcCcH
Q 036338 271 LINHKLI 277 (408)
Q Consensus 271 ~~~~G~i 277 (408)
.....-+
T Consensus 84 ~La~d~~ 90 (364)
T COG5330 84 ALAEDPI 90 (364)
T ss_pred HHhcCCh
Confidence 4433333
No 410
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=41.16 E-value=14 Score=25.69 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=8.7
Q ss_pred cccccCccccCC
Q 036338 13 FFRCPISLDVMK 24 (408)
Q Consensus 13 ~~~Cpi~~~~~~ 24 (408)
.|.||.|+.-+.
T Consensus 2 ~~~CP~CG~~ie 13 (54)
T TIGR01206 2 QFECPDCGAEIE 13 (54)
T ss_pred ccCCCCCCCEEe
Confidence 368999988553
No 411
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.01 E-value=6.1e+02 Score=29.14 Aligned_cols=203 Identities=15% Similarity=0.131 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHhcCC-----h-------h-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc------ch--
Q 036338 99 QDEVKDIIRVAISKN-----E-------D-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN------DV-- 157 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~-----~-------~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~------~~-- 157 (408)
.+.+-.+|..|+++- - + ...-+.+++....-|...+..+.++ |+...|...|..-. +.
T Consensus 719 hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgea-tGFslLlttLhtfqgftelhdesD 797 (2799)
T KOG1788|consen 719 HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEA-TGFSLLLTTLHTFQGFTELHDESD 797 (2799)
T ss_pred HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhcc-ccHHHHHHHHHHhccchhcCCchh
Confidence 467778888888741 1 1 3344556777766677888899999 88888887774311 11
Q ss_pred h-hH---HHHHHHHHHhcccccchHH-----------HHHHHhccCcc---------cHHHHHHH----HhcCCChHHHH
Q 036338 158 N-ML---KQVIRVLDLILNKIEDQQH-----------LMNLILKRDQD---------CLNSLLLV----LKQQESVDSRI 209 (408)
Q Consensus 158 ~-~~---e~A~~~L~~L~~~~~~~~~-----------~~~~i~~~~~g---------~i~~Lv~l----L~~~~~~~~~~ 209 (408)
+ +. .+.+.-|..++.+-...|. +-.++. ..| .|..|.++ |-.. ....-.
T Consensus 798 lcvyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLr--esgllcvnler~viqlllElalevlvpp-fLtSEs 874 (2799)
T KOG1788|consen 798 LCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLR--ESGLLCVNLERHVIQLLLELALEVLVPP-FLTSES 874 (2799)
T ss_pred hhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHH--HhccceecchHHHHHHHHHHHHHhhCCc-hhhhhH
Confidence 1 00 1122222223321011111 111222 223 11111111 1111 222233
Q ss_pred HHHHHHHHhhc-----------CcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccC-cchHHHHHhcCcH
Q 036338 210 ESLRLLEFIAG-----------DADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSS-KRAKTKLINHKLI 277 (408)
Q Consensus 210 ~Aa~~L~~La~-----------~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~-~~n~~~~~~~G~i 277 (408)
.|+..+..+-. ....++.|.. .|++..|++.+-.. .+..+-.-+..|-.++.. +.|....-..|.|
T Consensus 875 aAcaeVfelednifavntPsGqfnpdk~~iyn-agavRvlirslLln-ypK~qlefl~lleSlaRaspfnaelltS~gcv 952 (2799)
T KOG1788|consen 875 AACAEVFELEDNIFAVNTPSGQFNPDKQKIYN-AGAVRVLIRSLLLN-YPKLQLEFLNLLESLARASPFNAELLTSAGCV 952 (2799)
T ss_pred HHHHHHhhcccceeeeccCCCCcCchHhhhcc-cchhHHHHHHHHhh-ChHHHHHHHHHHHHHhhcCCCchhhhhcccHH
Confidence 44555555432 1234566766 89999999988775 788888888888888885 4577777789999
Q ss_pred HHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 278 TELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 278 ~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
..|++.+..-. +++......+..+++.|+.
T Consensus 953 ellleIiypfl------------------sgsspfLshalkIvemLga 982 (2799)
T KOG1788|consen 953 ELLLEIIYPFL------------------SGSSPFLSHALKIVEMLGA 982 (2799)
T ss_pred HHHHHHhhhhh------------------cCCchHhhccHHHHHHHhh
Confidence 99999987521 2355677778888888764
No 412
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=40.90 E-value=26 Score=39.60 Aligned_cols=41 Identities=20% Similarity=0.450 Sum_probs=25.8
Q ss_pred CCCCCcccccCccc--cCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 8 ITVPSFFRCPISLD--VMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 8 ~~~~~~~~Cpi~~~--~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
-.+|.++.||-|+. ++.|+-+ ..| |+ -....||.|+.++..
T Consensus 909 NPL~PHY~Cp~Cky~Ef~~d~sv-gsG--fD---------LpdK~CPkCg~pl~k 951 (1444)
T COG2176 909 NPLPPHYLCPECKYSEFIDDGSV-GSG--FD---------LPDKDCPKCGTPLKK 951 (1444)
T ss_pred CCCCccccCCCCceeeeecCCCc-CCC--CC---------CCCCCCCcCCCcccc
Confidence 36789999999974 4555532 222 21 123579999988654
No 413
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=40.87 E-value=31 Score=29.73 Aligned_cols=15 Identities=33% Similarity=0.348 Sum_probs=11.5
Q ss_pred CCCCCCCcccccCCC
Q 036338 47 GNNTCPATMQVLQSK 61 (408)
Q Consensus 47 ~~~~CP~~~~~l~~~ 61 (408)
..+.||.|+.++...
T Consensus 127 ~~F~Cp~Cg~~L~~~ 141 (158)
T TIGR00373 127 LNFTCPRCGAMLDYL 141 (158)
T ss_pred cCCcCCCCCCEeeec
Confidence 368899999887543
No 414
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=40.74 E-value=8.6 Score=24.53 Aligned_cols=11 Identities=27% Similarity=0.371 Sum_probs=7.9
Q ss_pred CCCCCCccccc
Q 036338 48 NNTCPATMQVL 58 (408)
Q Consensus 48 ~~~CP~~~~~l 58 (408)
...||.|+..+
T Consensus 26 ~~~CP~Cg~~~ 36 (41)
T smart00834 26 LATCPECGGDV 36 (41)
T ss_pred CCCCCCCCCcc
Confidence 35699998743
No 415
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=40.00 E-value=35 Score=29.95 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=30.4
Q ss_pred CCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcc-cHHHHHHHHHHHH
Q 036338 11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVP-NRTLQRLIQIWSD 78 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~-n~~l~~~I~~~~~ 78 (408)
+..|.||.|.--+ +|+..+- ..++||.|+..+...+-.+ ...+++.+++...
T Consensus 111 ~~~y~C~~~~~r~----------sfdeA~~------~~F~Cp~Cg~~L~~~d~s~~i~~l~~~i~~l~~ 163 (176)
T COG1675 111 NNYYVCPNCHVKY----------SFDEAME------LGFTCPKCGEDLEEYDSSEEIEELESELDELEE 163 (176)
T ss_pred CCceeCCCCCCcc----------cHHHHHH------hCCCCCCCCchhhhccchHHHHHHHHHHHHHHH
Confidence 4557787775422 3555542 2478999998876544333 3455555555443
No 416
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=39.99 E-value=22 Score=33.36 Aligned_cols=46 Identities=20% Similarity=0.458 Sum_probs=32.0
Q ss_pred ccccCccccCCCce---------------ec-CCCCcc-cHhhHHHHHhc----CCCCCCCcccccC
Q 036338 14 FRCPISLDVMKSPV---------------SL-CTGVTY-DRASIQRWLDS----GNNTCPATMQVLQ 59 (408)
Q Consensus 14 ~~Cpi~~~~~~dPv---------------~~-~cgh~f-~r~cI~~~~~~----~~~~CP~~~~~l~ 59 (408)
+.|+||++.|.-|= .- .||.-| +|+-+....+. ..+.|+.|++.|.
T Consensus 188 c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFs 254 (279)
T KOG2462|consen 188 CECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFA 254 (279)
T ss_pred cccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHH
Confidence 56999999998643 33 255556 47777777765 2367999998764
No 417
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=39.92 E-value=3.3e+02 Score=28.04 Aligned_cols=79 Identities=15% Similarity=0.269 Sum_probs=47.2
Q ss_pred hhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc---hHHHHHHHhccCcccHHHHHHHHhcCCChHH
Q 036338 131 DENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED---QQHLMNLILKRDQDCLNSLLLVLKQQESVDS 207 (408)
Q Consensus 131 ~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~---~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~ 207 (408)
.+.-.+|...++.|+.+++-+..+. +.+ .|..|... .+ ...+.+.+. +.+.|+.|+.+|....+.+.
T Consensus 10 ~e~l~Fik~~~~~v~~llkHI~~~~---ImD----lLLklIs~-d~~~~~~~ilewL~--~q~LI~~Li~~L~p~~~~~~ 79 (475)
T PF04499_consen 10 EEMLEFIKSQPNFVDNLLKHIDTPA---IMD----LLLKLIST-DKPESPTGILEWLA--EQNLIPRLIDLLSPSYSSDV 79 (475)
T ss_pred HHHHHHHHhCccHHHHHHHhcCCcH---HHH----HHHHHHcc-CcccchHHHHHHHH--HhCHHHHHHHHhCCCCCHHH
Confidence 4455566655677777776665433 112 22222210 11 111234444 78999999999974337889
Q ss_pred HHHHHHHHHHhh
Q 036338 208 RIESLRLLEFIA 219 (408)
Q Consensus 208 ~~~Aa~~L~~La 219 (408)
+.+|+..|..+.
T Consensus 80 q~naa~~L~aII 91 (475)
T PF04499_consen 80 QSNAADFLKAII 91 (475)
T ss_pred HHHHHHHHHHHH
Confidence 999998888774
No 418
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=39.67 E-value=19 Score=24.86 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=11.7
Q ss_pred CCCCcccHhhHHHHHhcCCCCCCCc
Q 036338 30 CTGVTYDRASIQRWLDSGNNTCPAT 54 (408)
Q Consensus 30 ~cgh~f~r~cI~~~~~~~~~~CP~~ 54 (408)
.|||.|..+--.+. .+...||.|
T Consensus 33 ~Cgh~w~~~v~~R~--~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKASVNDRT--RRGKGCPYC 55 (55)
T ss_pred CCCCeeEccHhhhc--cCCCCCCCC
Confidence 36666654432222 234568876
No 419
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.60 E-value=4e+02 Score=27.44 Aligned_cols=155 Identities=14% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCChh-HHHHHHHHHHHhhh-ChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 100 DEVKDIIRVAISKNED-FSENLTKIVAFAKE-SDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 100 ~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~-~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
+.+..+.....+++.. +..|+..|.+.+.. .++.+...-.. +..++.=|..+.+..++-+++..|..+.....+.
T Consensus 258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~---ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~ 334 (533)
T KOG2032|consen 258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQ---LDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASND 334 (533)
T ss_pred HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHH---HHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhc
Q ss_pred HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHh---hhcChHHHHHHhcccCCCHHHHHHH
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIA---ERDGLLAETVKSLSLDSDRRLIEAS 254 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~---~~~g~i~~Lv~lL~~~~~~~~~~~A 254 (408)
.- ..... .+.-.+..+..+. +.+.|..|..+.+.|+.....+..++ ...+...+|+-.|.+. ++.+.++.
T Consensus 335 ~l-~~~~l----~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~-~p~va~AC 407 (533)
T KOG2032|consen 335 DL-ESYLL----NIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDP-NPYVARAC 407 (533)
T ss_pred ch-hhhch----hHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCC-ChHHHHHH
Q ss_pred HHHHHHhccC
Q 036338 255 LSCLITISSS 264 (408)
Q Consensus 255 ~~aL~~Ls~~ 264 (408)
-.++..+..+
T Consensus 408 r~~~~~c~p~ 417 (533)
T KOG2032|consen 408 RSELRTCYPN 417 (533)
T ss_pred HHHHHhcCch
No 420
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.39 E-value=12 Score=40.54 Aligned_cols=35 Identities=14% Similarity=0.157 Sum_probs=26.9
Q ss_pred CCcccccCccccCC-Cceec-CCCCcccHhhHHHHHh
Q 036338 11 PSFFRCPISLDVMK-SPVSL-CTGVTYDRASIQRWLD 45 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~-dPv~~-~cgh~f~r~cI~~~~~ 45 (408)
...-.|-+|...+- .|-.+ +|||.|=+.||++...
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 33457999988654 47655 8999999999999653
No 421
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=39.08 E-value=5.9e+02 Score=28.40 Aligned_cols=156 Identities=13% Similarity=0.130 Sum_probs=91.1
Q ss_pred CChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHh-cCCChHHHHHHHHHHHHhh
Q 036338 141 DGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLK-QQESVDSRIESLRLLEFIA 219 (408)
Q Consensus 141 ~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~-~~~~~~~~~~Aa~~L~~La 219 (408)
|+++..|..+....+ ..+.-.-..+|...++ -|.+ ..... ++-+.|.++.+.. ...++.+-..+-.++..|+
T Consensus 529 p~ild~L~qlas~~s-~evl~llmE~Ls~vv~--~dpe--f~as~--~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~ 601 (1005)
T KOG2274|consen 529 PMILDGLLQLASKSS-DEVLVLLMEALSSVVK--LDPE--FAASM--ESKICPLTINLFLKYSEDPQVASLAQDLFEELL 601 (1005)
T ss_pred hHHHHHHHHHccccc-HHHHHHHHHHHHHHhc--cChh--hhhhh--hcchhHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 356666666665443 1122222334444443 3444 22222 5566666666554 2226666677777788888
Q ss_pred cCcchhhHHhhhcChHHHHHHhcccCC---CHHHHHHHHHHHHHhccCcc-hHHHHHhcCcHHHHHHHhccCCCCCCCCC
Q 036338 220 GDADSKVKIAERDGLLAETVKSLSLDS---DRRLIEASLSCLITISSSKR-AKTKLINHKLITELGKLITDGHNGNGSGN 295 (408)
Q Consensus 220 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~---~~~~~~~A~~aL~~Ls~~~~-n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~ 295 (408)
...++..-+.+ -.||.||..|.... .+....-|+..|-.+..+.+ .-....-.=++|++.+..-.
T Consensus 602 q~~~~~g~m~e--~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlH--------- 670 (1005)
T KOG2274|consen 602 QIAANYGPMQE--RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLH--------- 670 (1005)
T ss_pred HHHHhhcchHH--HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheee---------
Confidence 76666555554 47999999998642 24566667777776665433 22223333477888877632
Q ss_pred CCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 296 GNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
++|......+-.+|+.+..
T Consensus 671 -----------sdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 671 -----------SDDHETLQNATECLRALIS 689 (1005)
T ss_pred -----------cCChHHHHhHHHHHHHHHh
Confidence 3467777788888887765
No 422
>PRK11595 DNA utilization protein GntX; Provisional
Probab=38.69 E-value=23 Score=32.47 Aligned_cols=39 Identities=8% Similarity=-0.022 Sum_probs=26.8
Q ss_pred cccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338 15 RCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 15 ~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
.|++|++.+..+ .+..|..|..+|-.- ...||.|+.++.
T Consensus 7 ~C~~C~~~~~~~-----~~~lC~~C~~~l~~~-~~~C~~Cg~~~~ 45 (227)
T PRK11595 7 LCWLCRMPLALS-----HWGICSVCSRALRTL-KTCCPQCGLPAT 45 (227)
T ss_pred cCccCCCccCCC-----CCcccHHHHhhCCcc-cCcCccCCCcCC
Confidence 599999876322 234799998886322 247999997653
No 423
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=38.38 E-value=5.7e+02 Score=28.06 Aligned_cols=99 Identities=10% Similarity=0.047 Sum_probs=63.1
Q ss_pred HhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHH
Q 036338 199 LKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLIT 278 (408)
Q Consensus 199 L~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~ 278 (408)
|.+. ..++|.+|+..+..++..-...+..- -.++.++....++ +-..+...+.++..|+..- -..+...-.+|
T Consensus 527 l~d~-v~~Ir~~aa~~l~~l~~~~G~~w~~~---~~i~k~L~~~~q~-~y~~R~t~l~si~~la~v~--g~ei~~~~Llp 599 (759)
T KOG0211|consen 527 LPDH-VYSIREAAARNLPALVETFGSEWARL---EEIPKLLAMDLQD-NYLVRMTTLFSIHELAEVL--GQEITCEDLLP 599 (759)
T ss_pred hhhh-HHHHHHHHHHHhHHHHHHhCcchhHH---HhhHHHHHHhcCc-ccchhhHHHHHHHHHHHHh--ccHHHHHHHhH
Confidence 3344 56888999999888886554333332 2467677766654 4556666666666554422 12344555778
Q ss_pred HHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 279 ELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 279 ~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
.+.++..++ .+.++-.++..|..+..
T Consensus 600 ~~~~l~~D~---------------------vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 600 VFLDLVKDP---------------------VANVRINVAKHLPKILK 625 (759)
T ss_pred HHHHhccCC---------------------chhhhhhHHHHHHHHHh
Confidence 888887754 67888888887777654
No 424
>PF12773 DZR: Double zinc ribbon
Probab=38.28 E-value=27 Score=23.34 Aligned_cols=11 Identities=18% Similarity=0.295 Sum_probs=6.8
Q ss_pred CCCCCcccccC
Q 036338 49 NTCPATMQVLQ 59 (408)
Q Consensus 49 ~~CP~~~~~l~ 59 (408)
..||.|+..+.
T Consensus 30 ~~C~~Cg~~~~ 40 (50)
T PF12773_consen 30 KICPNCGAENP 40 (50)
T ss_pred CCCcCCcCCCc
Confidence 45777776543
No 425
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=38.22 E-value=2.8e+02 Score=24.46 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=50.4
Q ss_pred hHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc-hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcch
Q 036338 234 LLAETVKSLSLDSDRRLIEASLSCLITISSSKR-AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLI 312 (408)
Q Consensus 234 ~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~-n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (408)
.-..|+..|+.+.+.......+++|..|..+.. +|- +.|.++.++.-+..- ..+.|..+
T Consensus 102 lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~-----------------l~~~d~~v 161 (182)
T PF13251_consen 102 LHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPL-----------------LRHRDPNV 161 (182)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHH-----------------HhcCCCcH
Confidence 456677777777688888899999999988765 332 345666665544321 00238899
Q ss_pred HHHHHHHHHHHhCC
Q 036338 313 TEKALRLVEILSTT 326 (408)
Q Consensus 313 ~~~a~~~L~~L~~~ 326 (408)
+..++.++..|...
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999888653
No 426
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=38.21 E-value=3.4e+02 Score=25.34 Aligned_cols=81 Identities=14% Similarity=0.152 Sum_probs=48.7
Q ss_pred CcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccC-CCHHHHHHHHHHHHHhccCcc
Q 036338 188 DQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLD-SDRRLIEASLSCLITISSSKR 266 (408)
Q Consensus 188 ~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~~A~~aL~~Ls~~~~ 266 (408)
+..++++++++++.+ +. . --..++.....+-.+.......|-+++|-+++.++ .+.=+|.+|.+||..+...+.
T Consensus 71 e~~A~~~li~l~~~~-~~-~---~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~ 145 (249)
T PF06685_consen 71 EERALPPLIRLFSQD-DD-F---LEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGP 145 (249)
T ss_pred hhhhHHHHHHHHcCC-cc-h---HHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 567799999999865 32 1 11112221111111111111257789999999875 245689999999999987554
Q ss_pred -hHHHHHh
Q 036338 267 -AKTKLIN 273 (408)
Q Consensus 267 -n~~~~~~ 273 (408)
.|..+++
T Consensus 146 ~~Re~vi~ 153 (249)
T PF06685_consen 146 ISREEVIQ 153 (249)
T ss_pred CCHHHHHH
Confidence 6777654
No 427
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=37.92 E-value=4.1e+02 Score=26.29 Aligned_cols=136 Identities=10% Similarity=0.106 Sum_probs=68.2
Q ss_pred HHhcCChh--HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhh-cCc-chhhHHHHHHHHHHhcccccchHH----
Q 036338 108 VAISKNED--FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILS-NVN-DVNMLKQVIRVLDLILNKIEDQQH---- 179 (408)
Q Consensus 108 ~L~s~~~~--~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~-s~~-~~~~~e~A~~~L~~L~~~~~~~~~---- 179 (408)
.+..++.+ |..|..-|+.+++..++.-..+.. +.|..++.-.. ++. +-+..+.|+..+..|+.. ....
T Consensus 218 d~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~--~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k--~~t~~~Gv 293 (370)
T PF08506_consen 218 DLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM--QYIQQLLQQYASNPSNNWRSKDGALYLIGALASK--GSTTKSGV 293 (370)
T ss_dssp HSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBS--S--BTTB-
T ss_pred hccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhh--hccccCCc
Confidence 34433434 667888888888653332222221 12332222211 233 445558888888888752 1110
Q ss_pred --------HHHHHhccCcccHHHHHHHHh-cCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHH
Q 036338 180 --------LMNLILKRDQDCLNSLLLVLK-QQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRL 250 (408)
Q Consensus 180 --------~~~~i~~~~~g~i~~Lv~lL~-~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~ 250 (408)
+.... ..-++|-|- -. +. .+-.|..|++.+...... -.+..+. +++|.|+..|.++ +.-+
T Consensus 294 t~~~~~v~v~~Ff---~~~v~peL~--~~~~~-~piLka~aik~~~~Fr~~-l~~~~l~---~~~~~l~~~L~~~-~~vv 362 (370)
T PF08506_consen 294 TQTNELVDVVDFF---SQHVLPELQ--PDVNS-HPILKADAIKFLYTFRNQ-LPKEQLL---QIFPLLVNHLQSS-SYVV 362 (370)
T ss_dssp S-B-TTS-HHHHH---HHHTCHHHH---SS-S--HHHHHHHHHHHHHHGGG-S-HHHHH---HHHHHHHHHTTSS--HHH
T ss_pred ccccccccHHHHH---HHHhHHHhc--ccCCC-CcchHHHHHHHHHHHHhh-CCHHHHH---HHHHHHHHHhCCC-Ccch
Confidence 00001 111122221 01 23 556777788887777643 2344443 4799999999987 7778
Q ss_pred HHHHHHHH
Q 036338 251 IEASLSCL 258 (408)
Q Consensus 251 ~~~A~~aL 258 (408)
.-.|+.|+
T Consensus 363 ~tyAA~~i 370 (370)
T PF08506_consen 363 HTYAAIAI 370 (370)
T ss_dssp HHHHHHHH
T ss_pred hhhhhhhC
Confidence 88887764
No 428
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.79 E-value=6.8e+02 Score=28.74 Aligned_cols=195 Identities=14% Similarity=0.227 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhh----cCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCccc
Q 036338 116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILS----NVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDC 191 (408)
Q Consensus 116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~----s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~ 191 (408)
|.++-+.|..+... +.......+. +..+-+.|. +.. .-.+..++.+|..|-.. .+.+. ..++. -.
T Consensus 671 QkK~yrlL~~l~~~-~s~~~~~~q~---i~~I~n~L~ds~qs~~-~~~~~~rl~~L~~L~~~-~~~e~-~~~i~----k~ 739 (1176)
T KOG1248|consen 671 QKKAYRLLEELSSS-PSGEGLVEQR---IDDIFNSLLDSFQSSS-SPAQASRLKCLKRLLKL-LSAEH-CDLIP----KL 739 (1176)
T ss_pred HHHHHHHHHHHhcC-CchhhHHHHH---HHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHh-ccHHH-HHHHH----HH
Confidence 77777777777654 3333333322 223333332 222 11224444444444321 12222 33332 33
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhc----CcchhhHHhhhcChHHHHHHhcccC--CC-HHHHHHHHHHHHHhccC
Q 036338 192 LNSLLLVLKQQESVDSRIESLRLLEFIAG----DADSKVKIAERDGLLAETVKSLSLD--SD-RRLIEASLSCLITISSS 264 (408)
Q Consensus 192 i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~----~~~~~~~i~~~~g~i~~Lv~lL~~~--~~-~~~~~~A~~aL~~Ls~~ 264 (408)
|+-++-.++.- +...|.+|..+|..+.. .++..+. . ...|...+.++..+ .+ ........-|+..+..
T Consensus 740 I~EvIL~~Ke~-n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~-~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~- 814 (1176)
T KOG1248|consen 740 IPEVILSLKEV-NVKARRNAFALLVFIGAIQSSLDDGNEP--A-SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ- 814 (1176)
T ss_pred HHHHHHhcccc-cHHHHhhHHHHHHHHHHHHhhhcccccc--h-HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH-
Confidence 44445445666 89999999999999882 1111111 0 12455555555433 12 2222222333433332
Q ss_pred cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHHhhcCchHHH
Q 036338 265 KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQGRMEICQDAALLNGV 343 (408)
Q Consensus 265 ~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~~g~i~~l 343 (408)
+-..+...+.++.+++.+..-. ....+.+...|.+.+..++. .|+..-+.-.. ..+|.+
T Consensus 815 --e~~~~ld~~~l~~li~~V~~~L-----------------~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~-~LL~sl 874 (1176)
T KOG1248|consen 815 --EFKNILDDETLEKLISMVCLYL-----------------ASNSREIAKAAIGFIKVLVYKFPEECLSPHLE-ELLPSL 874 (1176)
T ss_pred --HHhccccHHHHHHHHHHHHHHH-----------------hcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHH-HHHHHH
Confidence 2233333344444444432210 02378999999999999975 46555444332 356666
Q ss_pred HHH
Q 036338 344 VQK 346 (408)
Q Consensus 344 v~~ 346 (408)
..+
T Consensus 875 l~l 877 (1176)
T KOG1248|consen 875 LAL 877 (1176)
T ss_pred HHH
Confidence 653
No 429
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=37.72 E-value=20 Score=28.38 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=24.3
Q ss_pred CCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCccccc
Q 036338 8 ITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVL 58 (408)
Q Consensus 8 ~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l 58 (408)
..+|..|.||-|+. .+-||.+ .+ ..++..||.|+...
T Consensus 16 ~klpt~f~CP~Cge-~~v~v~~------~k-------~~~h~~C~~CG~y~ 52 (99)
T PRK14892 16 PKLPKIFECPRCGK-VSISVKI------KK-------NIAIITCGNCGLYT 52 (99)
T ss_pred cCCCcEeECCCCCC-eEeeeec------CC-------CcceEECCCCCCcc
Confidence 35688899999995 3444443 22 13466799998754
No 430
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=37.25 E-value=2.3e+02 Score=23.09 Aligned_cols=110 Identities=23% Similarity=0.269 Sum_probs=0.0
Q ss_pred CChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc----------hHHHHHHHhccCcccHHHHHHHHhcCCC----hH
Q 036338 141 DGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED----------QQHLMNLILKRDQDCLNSLLLVLKQQES----VD 206 (408)
Q Consensus 141 ~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~----------~~~~~~~i~~~~~g~i~~Lv~lL~~~~~----~~ 206 (408)
+..++.++.++.++.... +..+.+|..+.....+ ...++..+......++..+.+.|... . .+
T Consensus 25 p~~l~~l~~~~~~~~~~~--~~~L~iL~~l~eEi~~~~~~~~~~~r~~~l~~~l~~~~~~i~~~l~~~l~~~-~~~~~~~ 101 (148)
T PF08389_consen 25 PDFLEDLLQLLQSSPQHL--ELVLRILRILPEEITDFRRSSLSQERRRELKDALRSNSPDILEILSQILSQS-SSEANEE 101 (148)
T ss_dssp TTHHHHHHHHHHTTHHHH--HHHHHHHHHHHHHHHTSHCCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHCCHHH
T ss_pred chHHHHHHHHhccchhHH--HHHHHHHHHHHHHHHhhhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccccHHH
Q ss_pred HHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHH
Q 036338 207 SRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCL 258 (408)
Q Consensus 207 ~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL 258 (408)
....+..++..... --.-..+.. ...++.+.++|.++ ..+..|+.+|
T Consensus 102 ~~~~~L~~l~s~i~-~~~~~~i~~-~~~l~~~~~~l~~~---~~~~~A~~cl 148 (148)
T PF08389_consen 102 LVKAALKCLKSWIS-WIPIELIIN-SNLLNLIFQLLQSP---ELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHTT-TS-HHHHHS-SSHHHHHHHHTTSC---CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCCHHHhcc-HHHHHHHHHHcCCH---HHHHHHHHhC
No 431
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=36.67 E-value=3.6e+02 Score=25.28 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=42.6
Q ss_pred ChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhcc
Q 036338 233 GLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITD 286 (408)
Q Consensus 233 g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~ 286 (408)
..+..|+.+|.++ .+-.+...+..|+.|-..-+.+.. ..+..|.+|+++|++
T Consensus 188 ~~l~~Ll~lL~n~-~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t 239 (262)
T PF14225_consen 188 QILTFLLGLLENG-PPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQT 239 (262)
T ss_pred HHHHHHHHHHhCC-cHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCC
Confidence 3577799999987 778999999999999876665544 666799999999976
No 432
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=36.65 E-value=1.2e+02 Score=23.42 Aligned_cols=68 Identities=16% Similarity=0.124 Sum_probs=49.7
Q ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHH
Q 036338 235 LAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITE 314 (408)
Q Consensus 235 i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (408)
+...+..|.++ .+.+|..++.-|+.|..... ...+-..+++..+...|.++ ++-+--
T Consensus 5 ~~~al~~L~dp-~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~---------------------DsyVYL 61 (92)
T PF10363_consen 5 LQEALSDLNDP-LPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDE---------------------DSYVYL 61 (92)
T ss_pred HHHHHHHccCC-CcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCC---------------------CchHHH
Confidence 45566777776 77899999999999988766 11122356667777777653 888888
Q ss_pred HHHHHHHHHhC
Q 036338 315 KALRLVEILST 325 (408)
Q Consensus 315 ~a~~~L~~L~~ 325 (408)
.|...|..|+.
T Consensus 62 ~aI~~L~~La~ 72 (92)
T PF10363_consen 62 NAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHHHH
Confidence 88888888876
No 433
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=36.31 E-value=19 Score=31.31 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=13.6
Q ss_pred CCCcccHhhHHHHHhcCCCCCCCcccc
Q 036338 31 TGVTYDRASIQRWLDSGNNTCPATMQV 57 (408)
Q Consensus 31 cgh~f~r~cI~~~~~~~~~~CP~~~~~ 57 (408)
|||++... ....||+|+.+
T Consensus 140 CGy~~~ge--------~P~~CPiCga~ 158 (166)
T COG1592 140 CGYTHEGE--------APEVCPICGAP 158 (166)
T ss_pred CCCcccCC--------CCCcCCCCCCh
Confidence 88887543 35579999865
No 434
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=36.01 E-value=1.9e+02 Score=29.78 Aligned_cols=72 Identities=15% Similarity=0.235 Sum_probs=56.0
Q ss_pred HHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHH-----------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHH
Q 036338 317 LRLVEILSTTKQGRMEICQDAALLNGVVQKMLK-----------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLK 385 (408)
Q Consensus 317 ~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~-----------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~ 385 (408)
-..+.-|-..+.--..+..+ =.+|+++.+|++ .+.+-+.+.+.++.|+.+|.....+..+..|+.+|+
T Consensus 10 ~e~l~Fik~~~~~v~~llkH-I~~~~ImDlLLklIs~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~ 88 (475)
T PF04499_consen 10 EEMLEFIKSQPNFVDNLLKH-IDTPAIMDLLLKLISTDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLK 88 (475)
T ss_pred HHHHHHHHhCccHHHHHHHh-cCCcHHHHHHHHHHccCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 34455555667777888887 468889998888 344445679999999999987777889999999999
Q ss_pred HHhh
Q 036338 386 IFRV 389 (408)
Q Consensus 386 ~l~~ 389 (408)
.+..
T Consensus 89 aII~ 92 (475)
T PF04499_consen 89 AIIR 92 (475)
T ss_pred HHHH
Confidence 8866
No 435
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=35.86 E-value=6.5e+02 Score=27.93 Aligned_cols=127 Identities=19% Similarity=0.197 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHH
Q 036338 116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNS 194 (408)
Q Consensus 116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~ 194 (408)
...|+..|..++......-.-.+. +..|.++..+.... ..+ +.++.++-.... . .. -..+++.
T Consensus 312 ~~~aa~~l~~ia~~lr~~~~~~~~--~v~p~lld~lkekk~~l~--d~l~~~~d~~~n---s-~~--------l~~~~~~ 375 (815)
T KOG1820|consen 312 VMLAAQILELIAKKLRPLFRKYAK--NVFPSLLDRLKEKKSELR--DALLKALDAILN---S-TP--------LSKMSEA 375 (815)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHH--hhcchHHHHhhhccHHHH--HHHHHHHHHHHh---c-cc--------HHHHHHH
Confidence 455777777777654433222222 56788888876654 222 433333332221 0 10 1234566
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHh-hcCc---chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338 195 LLLVLKQQESVDSRIESLRLLEFI-AGDA---DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS 263 (408)
Q Consensus 195 Lv~lL~~~~~~~~~~~Aa~~L~~L-a~~~---~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~ 263 (408)
+...++++ ++..+......+... ...+ ..+..+ .+.+|.++....+. +.+++.+|..++..+-.
T Consensus 376 I~e~lk~k-np~~k~~~~~~l~r~~~~~~~~~~~~~t~---~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 376 ILEALKGK-NPQIKGECLLLLDRKLRKLGPKTVEKETV---KTLVPHLIKHINDT-DKDVRKAALEAVAAVMK 443 (815)
T ss_pred HHHHhcCC-ChhhHHHHHHHHHHHHhhcCCcCcchhhH---HHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence 77888998 999998866555544 3333 222222 45788888888875 88999999999988754
No 436
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=35.42 E-value=47 Score=28.39 Aligned_cols=25 Identities=8% Similarity=0.251 Sum_probs=18.9
Q ss_pred CcccHhhHHHHHhcCCCCCCCcccccCCC
Q 036338 33 VTYDRASIQRWLDSGNNTCPATMQVLQSK 61 (408)
Q Consensus 33 h~f~r~cI~~~~~~~~~~CP~~~~~l~~~ 61 (408)
+.||..|=++-+. .||.|+.++.-.
T Consensus 28 ~~fC~kCG~~tI~----~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 28 EKFCSKCGAKTIT----SCPNCSTPIRGD 52 (158)
T ss_pred HHHHHHhhHHHHH----HCcCCCCCCCCc
Confidence 5789998666665 499999887654
No 437
>PHA00626 hypothetical protein
Probab=35.02 E-value=32 Score=23.97 Aligned_cols=13 Identities=8% Similarity=-0.067 Sum_probs=7.3
Q ss_pred CCCCCCcccccCC
Q 036338 48 NNTCPATMQVLQS 60 (408)
Q Consensus 48 ~~~CP~~~~~l~~ 60 (408)
.+.||.|+-.++.
T Consensus 23 rYkCkdCGY~ft~ 35 (59)
T PHA00626 23 DYVCCDCGYNDSK 35 (59)
T ss_pred ceEcCCCCCeech
Confidence 3457777655443
No 438
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=34.69 E-value=2.9e+02 Score=29.26 Aligned_cols=113 Identities=19% Similarity=0.152 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH
Q 036338 100 DEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ 178 (408)
Q Consensus 100 ~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~ 178 (408)
..+..++..+.+.+.. |.+.++.|+.+...-.+.- ...-. |.+..|.+-+-... .-+..+|+.+|..+-. .+.+
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eID-e~l~N-~L~ekl~~R~~DRE-~~VR~eAv~~L~~~Qe--~~~n 165 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREID-EVLAN-GLLEKLSERLFDRE-KAVRREAVKVLCYYQE--MELN 165 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHH-HHHHH-HHHHHHHHHHhcch-HHHHHHHHHHHHHHHh--ccCC
Confidence 3445555555666655 7778887776653221211 22222 55555554443333 2234888888887643 1112
Q ss_pred HHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHH
Q 036338 179 HLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKI 228 (408)
Q Consensus 179 ~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i 228 (408)
. .+.+ ...|+.++++..+.++|.. +|.++..++.....|
T Consensus 166 e-en~~-------~n~l~~~vqnDPS~EVRr~---allni~vdnsT~p~I 204 (885)
T COG5218 166 E-ENRI-------VNLLKDIVQNDPSDEVRRL---ALLNISVDNSTYPCI 204 (885)
T ss_pred h-HHHH-------HHHHHHHHhcCcHHHHHHH---HHHHeeeCCCcchhH
Confidence 1 2333 3467777887657788874 456666554444333
No 439
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=34.34 E-value=13 Score=20.76 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=10.4
Q ss_pred ccccCccccCCCcee
Q 036338 14 FRCPISLDVMKSPVS 28 (408)
Q Consensus 14 ~~Cpi~~~~~~dPv~ 28 (408)
|.|.+|...|.++..
T Consensus 1 ~~C~~C~~~f~s~~~ 15 (25)
T PF12874_consen 1 FYCDICNKSFSSENS 15 (25)
T ss_dssp EEETTTTEEESSHHH
T ss_pred CCCCCCCCCcCCHHH
Confidence 468888877777643
No 440
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=33.81 E-value=6.4e+02 Score=27.25 Aligned_cols=159 Identities=17% Similarity=0.234 Sum_probs=92.1
Q ss_pred HHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH
Q 036338 100 DEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ 178 (408)
Q Consensus 100 ~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~ 178 (408)
..|..|+..|.+.+.. ..++-..+..+.....+. + .|..||+.--+..+ ..|+.+|..+- +..
T Consensus 4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~--~------l~~~l~~y~~~t~s----~~~~~il~~~~----~P~ 67 (668)
T PF04388_consen 4 ASITELLSLLESNDLSVLEEIKALLQELLNSDREP--W------LVNGLVDYYLSTNS----QRALEILVGVQ----EPH 67 (668)
T ss_pred ccHHHHHHHhcCCchhhHHHHHHHHHHHhhccchH--H------HHHHHHHHHhhcCc----HHHHHHHHhcC----Ccc
Confidence 3467788888888765 333333444332221111 2 23345655433221 44566665542 221
Q ss_pred HHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338 179 HLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD-ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC 257 (408)
Q Consensus 179 ~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a 257 (408)
. +.+ +..|=..+. ....|..+..+|..+... +.--..|.. ...+.-|+++|..+.+..+...|+.+
T Consensus 68 ~-K~~--------~~~l~~~~~---~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~-t~Lf~~LLk~L~~D~~~~~~~~al~~ 134 (668)
T PF04388_consen 68 D-KHL--------FDKLNDYFV---KPSYRLQALTLLGHFVRSQPPWLYKILQ-TPLFKSLLKCLQFDTSITVVSSALLV 134 (668)
T ss_pred H-HHH--------HHHHHHHHc---CchhHHHHHHHHHHHHhcCCchHHHHhc-ChhHHHHHHHHhhcccHHHHHHHHHH
Confidence 1 222 333334444 447889999999988765 555666766 78999999999977788888999999
Q ss_pred HHHhccCcchHHHHHhcCcHHHHHHHhccC
Q 036338 258 LITISSSKRAKTKLINHKLITELGKLITDG 287 (408)
Q Consensus 258 L~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~ 287 (408)
|.-|-..-.+...=.=...+.....++.+.
T Consensus 135 LimlLP~ip~~l~~~L~~Lf~If~Rl~~W~ 164 (668)
T PF04388_consen 135 LIMLLPHIPSSLGPHLPDLFNIFGRLLSWE 164 (668)
T ss_pred HHHHhccccchhhHHHHHHHHHHHHHHHcc
Confidence 988865433211111124555666666664
No 441
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=33.78 E-value=23 Score=27.30 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=19.2
Q ss_pred eecCCCCcccHhhHHHHHhcCCCCCCCc
Q 036338 27 VSLCTGVTYDRASIQRWLDSGNNTCPAT 54 (408)
Q Consensus 27 v~~~cgh~f~r~cI~~~~~~~~~~CP~~ 54 (408)
|+++.|+.|++..|.+-++. .||+-
T Consensus 10 VtIp~G~KYdK~wLl~~iq~---~c~v~ 34 (88)
T PF09162_consen 10 VTIPYGKKYDKDWLLNSIQS---HCSVP 34 (88)
T ss_dssp EEETTGGGS-HHHHHHHHHH---HSSS-
T ss_pred EEecCCcccCHHHHHHHHHH---HCCCC
Confidence 78999999999999998764 46643
No 442
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=33.66 E-value=63 Score=28.14 Aligned_cols=44 Identities=27% Similarity=0.480 Sum_probs=28.0
Q ss_pred CCCCcccHhhHHHHHhcC-CCCCCCcccccCC-----CCCcccHHHHHHHH
Q 036338 30 CTGVTYDRASIQRWLDSG-NNTCPATMQVLQS-----KEFVPNRTLQRLIQ 74 (408)
Q Consensus 30 ~cgh~f~r~cI~~~~~~~-~~~CP~~~~~l~~-----~~l~~n~~l~~~I~ 74 (408)
.||+.|...-+...+... ...||.|+..+.+ .+..| ..+.+.++
T Consensus 110 ~C~~~~~~~~~~~~~~~~~~~~C~~C~~~lrp~vv~fgE~~~-~~~~~~~~ 159 (178)
T PF02146_consen 110 KCGKEYDREDIVDSIDEEEPPRCPKCGGLLRPDVVLFGESLP-EEIEEAIE 159 (178)
T ss_dssp TTSBEEEGHHHHHHHHTTSSCBCTTTSCBEEEEE--BTSB-S-HHHHHHHH
T ss_pred CCCccccchhhcccccccccccccccCccCCCCeeecCCCCH-HHHHHHHH
Confidence 588888887776655543 4679999986554 23334 45555554
No 443
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=33.61 E-value=19 Score=20.83 Aligned_cols=8 Identities=25% Similarity=0.904 Sum_probs=3.6
Q ss_pred CCCccccc
Q 036338 51 CPATMQVL 58 (408)
Q Consensus 51 CP~~~~~l 58 (408)
||+|.+.+
T Consensus 4 CPiC~~~v 11 (26)
T smart00734 4 CPVCFREV 11 (26)
T ss_pred CCCCcCcc
Confidence 44444433
No 444
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=33.55 E-value=36 Score=20.74 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=21.6
Q ss_pred cccCccccCCC--ceecCCCCcccHhhHHHHHhcCCCCCCCccccc
Q 036338 15 RCPISLDVMKS--PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVL 58 (408)
Q Consensus 15 ~Cpi~~~~~~d--Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l 58 (408)
.|+-|.+.+.+ .++..-|..|-..| +.|..|+.+|
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~C---------f~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPEC---------FKCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccC---------CCCcccCCcC
Confidence 47788887776 34334455554444 4688887765
No 445
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.43 E-value=4.5e+02 Score=25.42 Aligned_cols=142 Identities=15% Similarity=0.188 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
...+...+..|.+.+-+ +..++..|+.++.-+++....... -+|..+++-+++.- ..+...|+.++..+.. ..
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~--~vii~vvkslKNlR-S~VsraA~~t~~difs---~l 160 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH--EVIIAVVKSLKNLR-SAVSRAACMTLADIFS---SL 160 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH--HHHHHHHHHhcChH-HHHHHHHHHHHHHHHH---HH
Confidence 34566678888887766 889999999998777665554443 35666777776654 2344777777777653 11
Q ss_pred HHHHHHHhccCcccHHHHHHHHh-cC--CChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHH
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLK-QQ--ESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEAS 254 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~-~~--~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A 254 (408)
...|. + .+..++..|. .+ .+.-+++.|-.+|..+..+-.. .-+++.|+..+++. ++.++..+
T Consensus 161 ---n~~i~--~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~-n~r~r~~a 225 (334)
T KOG2933|consen 161 ---NNSID--Q--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHS-NPRVRAKA 225 (334)
T ss_pred ---HHHHH--H--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhh-chhhhhhh
Confidence 12232 2 3444444443 22 1445788999999888755321 22345566667765 66666666
Q ss_pred HHHHHHh
Q 036338 255 LSCLITI 261 (408)
Q Consensus 255 ~~aL~~L 261 (408)
+..+.+.
T Consensus 226 ~~~~~~~ 232 (334)
T KOG2933|consen 226 ALCFSRC 232 (334)
T ss_pred hcccccc
Confidence 5544443
No 446
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=33.34 E-value=2.2e+02 Score=30.71 Aligned_cols=70 Identities=14% Similarity=0.115 Sum_probs=51.2
Q ss_pred ccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338 190 DCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS 263 (408)
Q Consensus 190 g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~ 263 (408)
..|..|++.|... ++-+|..|...+..+..-+. ...+..+.++...++.|++. +.-+++.|...+..|-.
T Consensus 346 ~Lv~ll~ERl~D~-~py~RtKalqv~~kifdl~s--k~~~~r~ev~~lv~r~lqDr-ss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 346 DLVGLLVERLSDT-YPYTRTKALQVLEKIFDLNS--KTVGRRHEVIRLVGRRLQDR-SSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred HHHHHHHHHhhcc-chHHHHHHHHHHHHHHhCcc--cccchHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHh
Confidence 4466677777777 88999999999888875431 12222345677788888886 77899999999998754
No 447
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=33.28 E-value=7.3 Score=25.50 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=10.2
Q ss_pred CCCCCCCcccccCCCCCc
Q 036338 47 GNNTCPATMQVLQSKEFV 64 (408)
Q Consensus 47 ~~~~CP~~~~~l~~~~l~ 64 (408)
|...||.|+..+....+.
T Consensus 18 g~~vC~~CG~Vl~e~~i~ 35 (43)
T PF08271_consen 18 GELVCPNCGLVLEENIID 35 (43)
T ss_dssp TEEEETTT-BBEE-TTBS
T ss_pred CeEECCCCCCEeeccccc
Confidence 445788888776554433
No 448
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=33.28 E-value=4.2e+02 Score=27.75 Aligned_cols=50 Identities=12% Similarity=0.022 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccC-CCHHHHHHHHHHHHHh
Q 036338 204 SVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLD-SDRRLIEASLSCLITI 261 (408)
Q Consensus 204 ~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~~A~~aL~~L 261 (408)
+...|..|+++|..++.... ..+.+.|+.++.+. .++++|-+|..+|...
T Consensus 493 ~~~iR~~Av~Alr~~a~~~p--------~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 493 STFIRLAAILALRNLAKRDP--------RKVQEVLLPIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred CHHHHHHHHHHHHHHHHhCc--------hHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 56799999999998875321 12345566666652 4678888888777765
No 449
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=33.20 E-value=2.8e+02 Score=31.31 Aligned_cols=117 Identities=10% Similarity=0.093 Sum_probs=77.3
Q ss_pred ccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHH
Q 036338 190 DCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKT 269 (408)
Q Consensus 190 g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~ 269 (408)
+++..|..-|++. +..+|..||+-++.++.... ..++. .+|...++++.-..+..+-.-|+-||..|+.-+--..
T Consensus 341 ~vie~Lls~l~d~-dt~VrWSaAKg~grvt~rlp--~~Lad--~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDT-DTVVRWSAAKGLGRVTSRLP--PELAD--QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCC-cchhhHHHHHHHHHHHccCc--HHHHH--HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 6677777777888 88999999999999987655 33333 4678888877654356778889999999987553222
Q ss_pred HHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 270 KLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 270 ~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
...+ .++|.++.-|.-. .+ .|.-.....+++.|+.+...+++
T Consensus 416 s~l~-dVvplI~kaL~Yd-~~------------~G~~s~G~~VRDaAcY~~WAf~R 457 (1133)
T KOG1943|consen 416 SLLE-DVVPLILKALHYD-VR------------RGQHSVGQHVRDAACYVCWAFAR 457 (1133)
T ss_pred HHHH-HHHHHHHHHhhhh-hh------------hcccccccchHHHHHHHHHHHHh
Confidence 2222 2566666666431 01 11112345777888888877765
No 450
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=32.56 E-value=1.6e+02 Score=27.92 Aligned_cols=73 Identities=21% Similarity=0.320 Sum_probs=50.4
Q ss_pred ccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhh-HHhhhcChHH----HHHHhcc-------cCCCHHHHHHHHHH
Q 036338 190 DCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKV-KIAERDGLLA----ETVKSLS-------LDSDRRLIEASLSC 257 (408)
Q Consensus 190 g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~-~i~~~~g~i~----~Lv~lL~-------~~~~~~~~~~A~~a 257 (408)
=.+|+++.++.+. +.+.|..++.+|..+...-.... .+....|..+ .|..+|. ...+......|-.+
T Consensus 119 liiP~iL~llDD~-~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~ 197 (282)
T PF10521_consen 119 LIIPPILNLLDDY-SPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA 197 (282)
T ss_pred HHHhhHHHHhcCC-CHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence 4589999999998 99999999999999987543333 2222245333 3333443 11267888999999
Q ss_pred HHHhcc
Q 036338 258 LITISS 263 (408)
Q Consensus 258 L~~Ls~ 263 (408)
|..|..
T Consensus 198 L~~L~~ 203 (282)
T PF10521_consen 198 LLSLLK 203 (282)
T ss_pred HHHHHH
Confidence 999844
No 451
>PRK00420 hypothetical protein; Validated
Probab=32.50 E-value=20 Score=28.93 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=8.6
Q ss_pred CCCCCCCccccc
Q 036338 47 GNNTCPATMQVL 58 (408)
Q Consensus 47 ~~~~CP~~~~~l 58 (408)
|..+||.|+..+
T Consensus 39 g~~~Cp~Cg~~~ 50 (112)
T PRK00420 39 GEVVCPVHGKVY 50 (112)
T ss_pred CceECCCCCCee
Confidence 445699998764
No 452
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=32.22 E-value=18 Score=24.87 Aligned_cols=11 Identities=27% Similarity=0.552 Sum_probs=5.7
Q ss_pred CCCCcccccCC
Q 036338 50 TCPATMQVLQS 60 (408)
Q Consensus 50 ~CP~~~~~l~~ 60 (408)
.||+|+.+|+.
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 89999988754
No 453
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=32.17 E-value=27 Score=20.04 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=10.0
Q ss_pred ccccCccccCCCce
Q 036338 14 FRCPISLDVMKSPV 27 (408)
Q Consensus 14 ~~Cpi~~~~~~dPv 27 (408)
|.|++|...|.+.-
T Consensus 2 ~~C~~C~k~f~~~~ 15 (27)
T PF12171_consen 2 FYCDACDKYFSSEN 15 (27)
T ss_dssp CBBTTTTBBBSSHH
T ss_pred CCcccCCCCcCCHH
Confidence 66788877777653
No 454
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=31.54 E-value=26 Score=29.05 Aligned_cols=23 Identities=22% Similarity=0.371 Sum_probs=15.7
Q ss_pred cCCCCcccHhhHHHHHhcCCCCCCCccc
Q 036338 29 LCTGVTYDRASIQRWLDSGNNTCPATMQ 56 (408)
Q Consensus 29 ~~cgh~f~r~cI~~~~~~~~~~CP~~~~ 56 (408)
+.||+.|.....+ .+. -||.|+-
T Consensus 5 t~Cg~~f~dgs~e-il~----GCP~CGg 27 (131)
T PF09845_consen 5 TKCGRVFEDGSKE-ILS----GCPECGG 27 (131)
T ss_pred CcCCCCcCCCcHH-HHc----cCcccCC
Confidence 4699999866543 222 4999974
No 455
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=31.46 E-value=27 Score=37.27 Aligned_cols=43 Identities=19% Similarity=0.515 Sum_probs=31.7
Q ss_pred cccccCccccCCCceec--CCCCcccHhhHHHHHhcCCCCCCC-ccc
Q 036338 13 FFRCPISLDVMKSPVSL--CTGVTYDRASIQRWLDSGNNTCPA-TMQ 56 (408)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~--~cgh~f~r~cI~~~~~~~~~~CP~-~~~ 56 (408)
.|.|.+|.--.+---.+ .|||.--.+|..+||..|. .||. |+.
T Consensus 1028 ~~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd-~CpsGCGC 1073 (1081)
T KOG0309|consen 1028 TFQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGD-VCPSGCGC 1073 (1081)
T ss_pred eeeeeeEeeEeeccchhhccccccccHHHHHHHHhcCC-cCCCCCCc
Confidence 45688887655554444 4999999999999999765 6887 443
No 456
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=31.36 E-value=95 Score=29.61 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=42.3
Q ss_pred cChHHHHHHhcccCCCHHHHHHHHHHHHHhccCc---------------chHHHHHhcCcHHHHHHHhcc
Q 036338 232 DGLLAETVKSLSLDSDRRLIEASLSCLITISSSK---------------RAKTKLINHKLITELGKLITD 286 (408)
Q Consensus 232 ~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~---------------~n~~~~~~~G~i~~Lv~lL~~ 286 (408)
...+..+++-|... +...+-.|+++|.-++.+. .|...+.+.|++++|+++|..
T Consensus 59 ~~~i~~ll~~L~~~-~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 59 KDFIEKLLDQLESS-DSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45677788888876 7778888888888886532 367778899999999999975
No 457
>KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton]
Probab=31.14 E-value=27 Score=32.14 Aligned_cols=53 Identities=13% Similarity=0.072 Sum_probs=34.1
Q ss_pred cCCCCCCcccccCccccCCCceecCCCCcccHhhHHH---HHhcCCCCCCCccccc
Q 036338 6 LYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQR---WLDSGNNTCPATMQVL 58 (408)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~---~~~~~~~~CP~~~~~l 58 (408)
...++..++.|+-|.+-|.-||--.|-.-.+...|.. .|...++.|-.|.+|+
T Consensus 176 daRevk~eLyClrChD~mgipiCgaC~rpIeervi~amgKhWHveHFvCa~CekPF 231 (332)
T KOG2272|consen 176 DAREVKGELYCLRCHDKMGIPICGACRRPIEERVIFAMGKHWHVEHFVCAKCEKPF 231 (332)
T ss_pred hhhhhccceeccccccccCCcccccccCchHHHHHHHhccccchhheeehhcCCcc
Confidence 3446677888888888888887655554444444432 2333467788887764
No 458
>PF15616 TerY-C: TerY-C metal binding domain
Probab=30.99 E-value=26 Score=29.21 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=27.3
Q ss_pred cccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCccccc
Q 036338 13 FFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVL 58 (408)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l 58 (408)
..-||-|+..+-=-+- .||+.||-.- .+..+||-|++..
T Consensus 77 ~PgCP~CGn~~~fa~C-~CGkl~Ci~g------~~~~~CPwCg~~g 115 (131)
T PF15616_consen 77 APGCPHCGNQYAFAVC-GCGKLFCIDG------EGEVTCPWCGNEG 115 (131)
T ss_pred CCCCCCCcChhcEEEe-cCCCEEEeCC------CCCEECCCCCCee
Confidence 3579999986543333 7999998542 2356799999764
No 459
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=30.98 E-value=5e+02 Score=25.12 Aligned_cols=166 Identities=18% Similarity=0.206 Sum_probs=107.4
Q ss_pred HHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH-HHHHHHhccCcccHHHHHHHHhc----CCC--------hHHHHH
Q 036338 144 VVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ-HLMNLILKRDQDCLNSLLLVLKQ----QES--------VDSRIE 210 (408)
Q Consensus 144 i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~-~~~~~i~~~~~g~i~~Lv~lL~~----~~~--------~~~~~~ 210 (408)
+..+.+.|.+.. ......++..|..+.. .+.. ..++++.. -.--.+.|.+++.. +.. ..+|..
T Consensus 58 ~k~lyr~L~~~~-~~~~~~~LrLL~~iv~--f~~g~~a~~v~~~-fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~ 133 (330)
T PF11707_consen 58 LKLLYRSLSSSK-PSLTNPALRLLTAIVS--FDGGALAREVLRS-FDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTN 133 (330)
T ss_pred HHHHHHHhCcCc-HHHHHHHHHHHHHHHc--cCCHHHHHHHHHh-cCCchhhHHHHhccccccccccccccccCcCHHHH
Confidence 555666666655 2233577777777764 2332 22344321 11224555555532 101 177888
Q ss_pred HHHHHHHhhc--CcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHH-hccCc----chHHHHHhcCcHHHHHHH
Q 036338 211 SLRLLEFIAG--DADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLIT-ISSSK----RAKTKLINHKLITELGKL 283 (408)
Q Consensus 211 Aa~~L~~La~--~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~-Ls~~~----~n~~~~~~~G~i~~Lv~l 283 (408)
....+..+.. ++..+..+....+.+..+.+-|..+ +++.....+.+|+. +.... ..+..+.....+..|+.+
T Consensus 134 fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D-~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~L 212 (330)
T PF11707_consen 134 FIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD-PPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASL 212 (330)
T ss_pred HHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC-CHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHH
Confidence 8877776654 3457777776688899999999985 88999999999995 44333 356677788899999997
Q ss_pred hccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHH
Q 036338 284 ITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRM 331 (408)
Q Consensus 284 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 331 (408)
..... ..+...+.+.+-..|..+|.++..--
T Consensus 213 y~~~~-----------------~~~~~~~~~~vh~fL~~lcT~p~~Gv 243 (330)
T PF11707_consen 213 YSRDG-----------------EDEKSSVADLVHEFLLALCTDPKHGV 243 (330)
T ss_pred hcccC-----------------CcccchHHHHHHHHHHHHhcCCCccc
Confidence 76530 02345888999999999997665433
No 460
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=30.86 E-value=6e+02 Score=26.07 Aligned_cols=59 Identities=5% Similarity=0.160 Sum_probs=35.9
Q ss_pred ChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338 204 SVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS 263 (408)
Q Consensus 204 ~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~ 263 (408)
+...-..+...+..|...-..-+..-.-..+.|.+++--.+. +..+|+.|+-+|..+-.
T Consensus 419 D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 419 DEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred cchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 444444444455555543222222222256788888888886 78899999988877643
No 461
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=30.82 E-value=42 Score=22.91 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=19.8
Q ss_pred CcccccCccccCCCc-eecCCCCcccHhhHHH
Q 036338 12 SFFRCPISLDVMKSP-VSLCTGVTYDRASIQR 42 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dP-v~~~cgh~f~r~cI~~ 42 (408)
+-|.|..|...+.+. ....-|.-||+.|..+
T Consensus 25 ~Cf~C~~C~~~l~~~~~~~~~~~~~C~~c~~~ 56 (58)
T PF00412_consen 25 ECFKCSKCGKPLNDGDFYEKDGKPYCKDCYQK 56 (58)
T ss_dssp TTSBETTTTCBTTTSSEEEETTEEEEHHHHHH
T ss_pred cccccCCCCCccCCCeeEeECCEEECHHHHhh
Confidence 446777777777665 3445667777776554
No 462
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.66 E-value=5.1e+02 Score=28.33 Aligned_cols=136 Identities=10% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChh--HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH
Q 036338 102 VKDIIRVAISKNED--FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH 179 (408)
Q Consensus 102 i~~Lv~~L~s~~~~--~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~ 179 (408)
+..|-..|+...-- +...+..|.....++++.|+....+ |..++.+.. ....+..+|..|-. +-+
T Consensus 393 m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~------LCefIEDce---~~~i~~rILhlLG~---EgP- 459 (865)
T KOG1078|consen 393 MNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEH------LCEFIEDCE---FTQIAVRILHLLGK---EGP- 459 (865)
T ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHH------HHHHHHhcc---chHHHHHHHHHHhc---cCC-
Q ss_pred HHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHH
Q 036338 180 LMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLI 259 (408)
Q Consensus 180 ~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~ 259 (408)
+... ....+..+...+--. +..+|..|..+|.++. ...-+...-+.-.|.+++.+. |.++++.|.-+|.
T Consensus 460 -~a~~---Pskyir~iyNRviLE-n~ivRaaAv~alaKfg-----~~~~~l~~sI~vllkRc~~D~-DdevRdrAtf~l~ 528 (865)
T KOG1078|consen 460 -KAPN---PSKYIRFIYNRVILE-NAIVRAAAVSALAKFG-----AQDVVLLPSILVLLKRCLNDS-DDEVRDRATFYLK 528 (865)
T ss_pred -CCCC---cchhhHHHhhhhhhh-hhhhHHHHHHHHHHHh-----cCCCCccccHHHHHHHHhcCc-hHHHHHHHHHHHH
Q ss_pred Hh
Q 036338 260 TI 261 (408)
Q Consensus 260 ~L 261 (408)
++
T Consensus 529 ~l 530 (865)
T KOG1078|consen 529 NL 530 (865)
T ss_pred Hh
No 463
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=30.59 E-value=13 Score=35.45 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=20.7
Q ss_pred ceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 26 PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 26 Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
|++..-|-+||+.|-.+....+.+.|+.|+..|..
T Consensus 323 p~~~~~~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCl 357 (378)
T KOG2807|consen 323 PETEYNGSRFCFACQGELLSSGRYRCESCKNVFCL 357 (378)
T ss_pred cccccCCCcceeeeccccCCCCcEEchhccceeec
Confidence 44444566778888333333344668888877654
No 464
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=30.41 E-value=34 Score=26.46 Aligned_cols=37 Identities=16% Similarity=0.364 Sum_probs=26.8
Q ss_pred ccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 14 FRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
-.|-||..-...| ||.||+.|=. ....|.-|+..+.+
T Consensus 45 ~~C~~CK~~v~q~-----g~~YCq~CAY-----kkGiCamCGKki~d 81 (90)
T PF10235_consen 45 SKCKICKTKVHQP-----GAKYCQTCAY-----KKGICAMCGKKILD 81 (90)
T ss_pred ccccccccccccC-----CCccChhhhc-----ccCcccccCCeecc
Confidence 3688888754444 8999999932 24579999987643
No 465
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.31 E-value=7.1e+02 Score=27.69 Aligned_cols=65 Identities=14% Similarity=0.228 Sum_probs=50.6
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338 196 LLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS 263 (408)
Q Consensus 196 v~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~ 263 (408)
+..+... -..+|..|...|..+....+.+..+.. .+++....+.|++. ++-+--.|...+..||.
T Consensus 733 i~sl~d~-qvpik~~gL~~l~~l~e~r~~~~~~~~-ekvl~i~ld~Lkde-dsyvyLnaI~gv~~Lce 797 (982)
T KOG4653|consen 733 ISSLHDD-QVPIKGYGLQMLRHLIEKRKKATLIQG-EKVLAIALDTLKDE-DSYVYLNAIRGVVSLCE 797 (982)
T ss_pred HHHhcCC-cccchHHHHHHHHHHHHhcchhhhhhH-HHHHHHHHHHhccc-CceeeHHHHHHHHHHHH
Confidence 3444455 667888999999999987766666666 78999999999997 77777778887777775
No 466
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=30.24 E-value=9.3 Score=37.81 Aligned_cols=42 Identities=14% Similarity=0.260 Sum_probs=27.9
Q ss_pred CCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338 11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
-.+|+|.+|++.|.||..+. -|.. .|| ..-.+.||.|.+.|+
T Consensus 265 iGdyiCqLCK~kYeD~F~LA-QHrC--~RI----V~vEYrCPEC~KVFs 306 (500)
T KOG3993|consen 265 IGDYICQLCKEKYEDAFALA-QHRC--PRI----VHVEYRCPECDKVFS 306 (500)
T ss_pred HHHHHHHHHHHhhhhHHHHh-hccC--Cee----EEeeecCCccccccc
Confidence 35799999999999998762 0111 111 112367999998874
No 467
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=30.14 E-value=75 Score=18.45 Aligned_cols=28 Identities=18% Similarity=0.149 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhccc
Q 036338 206 DSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSL 244 (408)
Q Consensus 206 ~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~ 244 (408)
.+|..|+.+|.++. . ..+++.|++.|++
T Consensus 2 ~vR~~aa~aLg~~~----------~-~~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLG----------D-EEAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcC----------C-HhHHHHHHHHhcC
Confidence 46788888888873 2 3457778877764
No 468
>PRK05978 hypothetical protein; Provisional
Probab=30.11 E-value=33 Score=29.24 Aligned_cols=10 Identities=20% Similarity=0.431 Sum_probs=4.8
Q ss_pred CCCCCccccc
Q 036338 49 NTCPATMQVL 58 (408)
Q Consensus 49 ~~CP~~~~~l 58 (408)
..||.|++.+
T Consensus 53 ~~C~~CG~~~ 62 (148)
T PRK05978 53 DHCAACGEDF 62 (148)
T ss_pred CCccccCCcc
Confidence 3455555444
No 469
>PF11290 DUF3090: Protein of unknown function (DUF3090); InterPro: IPR021441 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=30.11 E-value=45 Score=29.05 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=14.0
Q ss_pred HhcCCCCCCCcccccCCC
Q 036338 44 LDSGNNTCPATMQVLQSK 61 (408)
Q Consensus 44 ~~~~~~~CP~~~~~l~~~ 61 (408)
...|...||.|++++.+.
T Consensus 150 VaAGRP~CPlCg~PlDP~ 167 (171)
T PF11290_consen 150 VAAGRPPCPLCGEPLDPE 167 (171)
T ss_pred HhCCCCCCCCCCCCCCCC
Confidence 345778999999998653
No 470
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=29.85 E-value=31 Score=22.36 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=12.5
Q ss_pred cccCccccCCCcee-cC----CCCcccHhh
Q 036338 15 RCPISLDVMKSPVS-LC----TGVTYDRAS 39 (408)
Q Consensus 15 ~Cpi~~~~~~dPv~-~~----cgh~f~r~c 39 (408)
-||+|.- +|=.. .+ -|+-||+.|
T Consensus 5 pCP~CGG--~DrFri~~d~~~~G~~~C~~C 32 (40)
T PF08273_consen 5 PCPICGG--KDRFRIFDDKDGRGTWICRQC 32 (40)
T ss_dssp --TTTT---TTTEEEETT----S-EEETTT
T ss_pred CCCCCcC--ccccccCcCcccCCCEECCCC
Confidence 4999987 55443 23 488888887
No 471
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=29.78 E-value=46 Score=37.94 Aligned_cols=64 Identities=14% Similarity=0.039 Sum_probs=30.6
Q ss_pred cccccCccccCCCceecCCCCc-----ccHhhHHHHHh--cCCCCCCCcccccCCC---CCcccHHHHHHHHHH
Q 036338 13 FFRCPISLDVMKSPVSLCTGVT-----YDRASIQRWLD--SGNNTCPATMQVLQSK---EFVPNRTLQRLIQIW 76 (408)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~cgh~-----f~r~cI~~~~~--~~~~~CP~~~~~l~~~---~l~~n~~l~~~I~~~ 76 (408)
.+.||-|+..-....--.||.. +|..|=.+.-. .+...||.|+.++... .+-....++++.+..
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~~i~~~~~~~~A~~~~ 740 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRRTINVKEEYRSALENV 740 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceEEecHHHHHHHHHHHh
Confidence 3678888775433211136643 35555221100 0123699998775442 222333445544443
No 472
>TIGR03847 conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.
Probab=29.55 E-value=46 Score=28.99 Aligned_cols=18 Identities=17% Similarity=0.442 Sum_probs=14.5
Q ss_pred HHhcCCCCCCCcccccCC
Q 036338 43 WLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 43 ~~~~~~~~CP~~~~~l~~ 60 (408)
-...|...||.|++++.+
T Consensus 151 VVaAGRP~CPlCg~PldP 168 (177)
T TIGR03847 151 VVAAGRPPCPLCGRPIDP 168 (177)
T ss_pred HHhCCCCCCCCCCCCCCC
Confidence 345578899999999875
No 473
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=29.50 E-value=20 Score=23.71 Aligned_cols=11 Identities=18% Similarity=0.244 Sum_probs=8.1
Q ss_pred CCCCCcccccC
Q 036338 49 NTCPATMQVLQ 59 (408)
Q Consensus 49 ~~CP~~~~~l~ 59 (408)
..||.|+.++.
T Consensus 22 ~~Cp~CG~~~~ 32 (46)
T PRK00398 22 VRCPYCGYRIL 32 (46)
T ss_pred eECCCCCCeEE
Confidence 46999987653
No 474
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=29.13 E-value=27 Score=37.24 Aligned_cols=48 Identities=17% Similarity=0.193 Sum_probs=33.9
Q ss_pred CCCcccccCccccCCCc--------eec--CCCCcc--------------------cHhhHHHHHhcC-------CCCCC
Q 036338 10 VPSFFRCPISLDVMKSP--------VSL--CTGVTY--------------------DRASIQRWLDSG-------NNTCP 52 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~dP--------v~~--~cgh~f--------------------~r~cI~~~~~~~-------~~~CP 52 (408)
+|+--+|+-|++.|.|| .+. .||=.| |-.|-.+|-+-. ...||
T Consensus 98 ~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp 177 (750)
T COG0068 98 PPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACP 177 (750)
T ss_pred CCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCc
Confidence 56778999999999994 444 488655 677877775421 23599
Q ss_pred Ccccc
Q 036338 53 ATMQV 57 (408)
Q Consensus 53 ~~~~~ 57 (408)
.|+=.
T Consensus 178 ~CGP~ 182 (750)
T COG0068 178 KCGPH 182 (750)
T ss_pred ccCCC
Confidence 99843
No 475
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=28.79 E-value=1.3e+02 Score=28.59 Aligned_cols=54 Identities=20% Similarity=0.233 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhC--------------hhhhhhhhhcCChHHHHHHHhhc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKES--------------DENKTFLAKFDGLVVMLVEILSN 153 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~--------------~~~r~~i~~~~G~i~~Lv~lL~s 153 (408)
..-+..++..|.+++.. +.+|++.|.-++.+. ..|...+.+. |+++.|+.+|..
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~-g~~~~l~~~L~~ 127 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYEC-GGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 55688899999988877 899999998887542 1355567888 999999999865
No 476
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=28.58 E-value=97 Score=31.90 Aligned_cols=61 Identities=10% Similarity=0.093 Sum_probs=50.6
Q ss_pred CCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338 202 QESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS 263 (408)
Q Consensus 202 ~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~ 263 (408)
+.+.+.+..|..++.+++.+.++|....-+...-..+++++-.. .+++-++++.|+..+-.
T Consensus 339 ~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~-~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 339 HKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTP-EPRVNKAAARALAILGE 399 (763)
T ss_pred ccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccc-ccccchhhhHHHHHhhh
Confidence 33889999999999999999998887766566777888888876 77888889999888774
No 477
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=28.54 E-value=7.2e+02 Score=26.18 Aligned_cols=182 Identities=14% Similarity=0.129 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHH-HHHHhhhChhhhh----hhhhc--CChHHHHHHHhhcCcchhhHHHHHHHHHHhc
Q 036338 99 QDEVKDIIRVAISKNEDFSENLTK-IVAFAKESDENKT----FLAKF--DGLVVMLVEILSNVNDVNMLKQVIRVLDLIL 171 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~~~~Al~~-L~~la~~~~~~r~----~i~~~--~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~ 171 (408)
...+-.|+..++.-+.+.+..+.. +..-. .....|. .+..+ ..++..+.+++.+..-.. ..|...|..|.
T Consensus 346 ~~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~-~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~~--~ea~~~l~~l~ 422 (618)
T PF01347_consen 346 LSKFSRLVRLLRTLSYEDLEELYKQLKSKS-KKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLTD--DEAAQLLASLP 422 (618)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHHHHTTS----HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S-H--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCH--HHHHHHHHHHH
Confidence 345677788887766553332221 21110 1123333 33333 134666777777755111 33444444443
Q ss_pred ccccc-hHHHHHHHhccCcccHHHHHHHHhc----CCChHHHHHHHHHHHHhhc----Cc-------chhhHHhhhcChH
Q 036338 172 NKIED-QQHLMNLILKRDQDCLNSLLLVLKQ----QESVDSRIESLRLLEFIAG----DA-------DSKVKIAERDGLL 235 (408)
Q Consensus 172 ~~~~~-~~~~~~~i~~~~~g~i~~Lv~lL~~----~~~~~~~~~Aa~~L~~La~----~~-------~~~~~i~~~~g~i 235 (408)
. .- .+. .+. +..+..++++ . +...+..|...+..|.. .. .....+. ...+
T Consensus 423 ~--~~~~Pt-~e~--------l~~l~~L~~~~~~~~-~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~--~~~~ 488 (618)
T PF01347_consen 423 F--HVRRPT-EEL--------LKELFELAKSPKVKN-SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCII--EKYV 488 (618)
T ss_dssp H--T------HHH--------HHHHHHHHT-HHHHT--HHHHHHHHHHHHHHHHHHHTT-----------SS----GGGT
T ss_pred h--hcCCCC-HHH--------HHHHHHHHhCccccC-ChhHHHHHHHHHHHHhCceeecccccccccccchhhH--HHHH
Confidence 2 11 111 222 3334444432 3 45666666666666643 21 1122222 3467
Q ss_pred HHHHHhcc---cCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcch
Q 036338 236 AETVKSLS---LDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLI 312 (408)
Q Consensus 236 ~~Lv~lL~---~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (408)
+.|...|. +..+...+..++.||.|+-.. ..++.|...+... ......+
T Consensus 489 ~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~----------~~i~~l~~~i~~~------------------~~~~~~~ 540 (618)
T PF01347_consen 489 PYLEQELKEAVSRGDEEEKIVYLKALGNLGHP----------ESIPVLLPYIEGK------------------EEVPHFI 540 (618)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G----------GGHHHHHTTSTTS------------------S-S-HHH
T ss_pred HHHHHHHHHHhhccCHHHHHHHHHHhhccCCc----------hhhHHHHhHhhhc------------------cccchHH
Confidence 77777776 223668888999999998642 3677788777642 0225677
Q ss_pred HHHHHHHHHHHhC
Q 036338 313 TEKALRLVEILST 325 (408)
Q Consensus 313 ~~~a~~~L~~L~~ 325 (408)
+-.|+.+|..++.
T Consensus 541 R~~Ai~Alr~~~~ 553 (618)
T PF01347_consen 541 RVAAIQALRRLAK 553 (618)
T ss_dssp HHHHHHTTTTGGG
T ss_pred HHHHHHHHHHHhh
Confidence 7888888887754
No 478
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=28.38 E-value=11 Score=35.96 Aligned_cols=44 Identities=16% Similarity=0.043 Sum_probs=19.8
Q ss_pred cccccCccccCCCceecCC---C--CcccHhhHHHHHhcCCCCCCCcccc
Q 036338 13 FFRCPISLDVMKSPVSLCT---G--VTYDRASIQRWLDSGNNTCPATMQV 57 (408)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~c---g--h~f~r~cI~~~~~~~~~~CP~~~~~ 57 (408)
.-.||+|+..-.=-++..- | |-+|.-|=.+|-- ....||.|+..
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~-~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRF-VRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE---TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeee-cCCCCcCCCCC
Confidence 3689999976444444444 5 5678889888833 24569999864
No 479
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=28.25 E-value=31 Score=21.72 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=14.4
Q ss_pred ccccCccccCCCceecCCCCcccHhh
Q 036338 14 FRCPISLDVMKSPVSLCTGVTYDRAS 39 (408)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~cgh~f~r~c 39 (408)
+.|+.|...+ ....-|..||.+|
T Consensus 9 ~~C~~C~~~~---~~~~dG~~yC~~c 31 (36)
T PF11781_consen 9 EPCPVCGSRW---FYSDDGFYYCDRC 31 (36)
T ss_pred CcCCCCCCeE---eEccCCEEEhhhC
Confidence 3488888762 2335677777665
No 480
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=28.20 E-value=31 Score=27.20 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=15.4
Q ss_pred cCCCCcccHhhHHHHHhcCCCCCCCcccc
Q 036338 29 LCTGVTYDRASIQRWLDSGNNTCPATMQV 57 (408)
Q Consensus 29 ~~cgh~f~r~cI~~~~~~~~~~CP~~~~~ 57 (408)
+.|||.|.... +..+. -||.|+-.
T Consensus 6 trCG~vf~~g~-~~il~----GCp~CG~n 29 (112)
T COG3364 6 TRCGEVFDDGS-EEILS----GCPKCGCN 29 (112)
T ss_pred ccccccccccc-HHHHc----cCccccch
Confidence 57999998752 12222 49999853
No 481
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=27.94 E-value=95 Score=28.27 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=18.3
Q ss_pred CCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 30 CTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 30 ~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
.||+.|...-+........+.||.|+-.+.+
T Consensus 118 ~C~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP 148 (222)
T cd01413 118 NCGSKYDLEEVKYAKKHEVPRCPKCGGIIRP 148 (222)
T ss_pred CCCCCcchhHHHHhccCCCCcCCCCCCccCC
Confidence 3666666655433322234679999876544
No 482
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=27.58 E-value=23 Score=34.51 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=23.8
Q ss_pred CCcccccCcc-ccCCCceecCCCCcccHhhHH
Q 036338 11 PSFFRCPISL-DVMKSPVSLCTGVTYDRASIQ 41 (408)
Q Consensus 11 ~~~~~Cpi~~-~~~~dPv~~~cgh~f~r~cI~ 41 (408)
...+.|.=|+ .-...=..++||.-|||.||.
T Consensus 37 ~gk~~C~RC~~~~~~~~~~lp~~~~YCr~Cl~ 68 (441)
T COG4098 37 NGKYRCNRCGNTHIELFAKLPCGCLYCRNCLM 68 (441)
T ss_pred cCcEEehhcCCcchhhhcccccceEeehhhhh
Confidence 3457899998 444445678999999999985
No 483
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=27.10 E-value=87 Score=25.15 Aligned_cols=37 Identities=30% Similarity=0.385 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc
Q 036338 117 SENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN 155 (408)
Q Consensus 117 ~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~ 155 (408)
-..++.+..++. .|+.-..+++. |+++.|+.||....
T Consensus 64 d~~Ik~l~~La~-~P~LYp~lv~l-~~v~sL~~LL~HeN 100 (108)
T PF08216_consen 64 DEEIKKLSVLAT-APELYPELVEL-GAVPSLLGLLSHEN 100 (108)
T ss_pred HHHHHHHHHccC-ChhHHHHHHHc-CCHHHHHHHHCCCC
Confidence 346777777776 47888889999 99999999997765
No 484
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=26.90 E-value=5e+02 Score=28.48 Aligned_cols=168 Identities=11% Similarity=0.147 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhcCChh--HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhccccc
Q 036338 99 QDEVKDIIRVAISKNED--FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIE 175 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~--~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~ 175 (408)
+..++.+.+.+...+.. +..+...+..+++.-+. ..... +.++.+..++.... .++ +.|...+.++.....
T Consensus 235 k~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~---~~~~s-~v~~~~~~L~~DdqdsVr--~~a~~~~~~l~~l~~ 308 (759)
T KOG0211|consen 235 KRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLES---EIVKS-EVLPTLIQLLRDDQDSVR--EAAVESLVSLLDLLD 308 (759)
T ss_pred HHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHH---HHHHh-hccHHHhhhhhcchhhHH--HHHHHHHHHHHHhcC
Confidence 34555666666655433 56666677777654322 56666 88899999887665 344 777666665542111
Q ss_pred ch-HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHH
Q 036338 176 DQ-QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEAS 254 (408)
Q Consensus 176 ~~-~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A 254 (408)
++ +. ..-..+.++.....+ +..++...+.....|...-+. ..+. .--+++...++++. ..+.+.++
T Consensus 309 ~~~d~--------~~~~~~~l~~~~~d~-~~~v~~~~~~~~~~L~~~~~~--~~~~-~~~~~~~~~l~~~~-~~e~r~a~ 375 (759)
T KOG0211|consen 309 DDDDV--------VKSLTESLVQAVEDG-SWRVSYMVADKFSELSSAVGP--SATR-TQLVPPVSNLLKDE-EWEVRYAI 375 (759)
T ss_pred Cchhh--------hhhhhHHHHHHhcCh-hHHHHHHHhhhhhhHHHHhcc--ccCc-ccchhhHHHHhcch-hhhhhHHh
Confidence 22 21 234577888888887 777777777776666643222 2222 23467777777664 33444444
Q ss_pred HHHHHHhccC--cchHHHHHhcCcHHHHHHHhc
Q 036338 255 LSCLITISSS--KRAKTKLINHKLITELGKLIT 285 (408)
Q Consensus 255 ~~aL~~Ls~~--~~n~~~~~~~G~i~~Lv~lL~ 285 (408)
+.=.-.++.. .+.+..+...-++|.+-.+..
T Consensus 376 a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~ 408 (759)
T KOG0211|consen 376 AKKVQKLACYLNASCYPNIPDSSILPEVQVLVL 408 (759)
T ss_pred hcchHHHhhhcCcccccccchhhhhHHHHHHHh
Confidence 4444444332 223344444444555554444
No 485
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=26.87 E-value=69 Score=34.30 Aligned_cols=65 Identities=14% Similarity=0.220 Sum_probs=43.5
Q ss_pred CCCCcccccCccccCCCceec-CCCCcccHhhHHHHHhc----CCCCCCCcccccCCCCCcccHHHHHHHH
Q 036338 9 TVPSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDS----GNNTCPATMQVLQSKEFVPNRTLQRLIQ 74 (408)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~----~~~~CP~~~~~l~~~~l~~n~~l~~~I~ 74 (408)
.+.-.+.|||++.-|.-|+-- .|.|-=|..... ++.. ....||+|.+....+.++-+..+-..++
T Consensus 302 ~~~vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~-~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~ 371 (636)
T KOG2169|consen 302 SLRVSLNCPLSKMRMSLPARGHTCKHLQCFDALS-YLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQ 371 (636)
T ss_pred cceeEecCCcccceeecCCcccccccceecchhh-hHHhccCCCeeeCccCCccccccchhhhHHHHHHHh
Confidence 345568899999999999865 688765555422 1221 2357999998776677766655555433
No 486
>PHA00733 hypothetical protein
Probab=26.85 E-value=76 Score=26.25 Aligned_cols=18 Identities=11% Similarity=0.108 Sum_probs=13.1
Q ss_pred CcccccCccccCCCceec
Q 036338 12 SFFRCPISLDVMKSPVSL 29 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~ 29 (408)
....|.||...+.+|..+
T Consensus 39 ~~~~~~~~~~~~~~~~~l 56 (128)
T PHA00733 39 KRLIRAVVKTLIYNPQLL 56 (128)
T ss_pred hhHHHHHHhhhccChhhh
Confidence 347788888888877655
No 487
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=26.79 E-value=31 Score=24.87 Aligned_cols=12 Identities=25% Similarity=0.254 Sum_probs=8.8
Q ss_pred ccccCccccCCC
Q 036338 14 FRCPISLDVMKS 25 (408)
Q Consensus 14 ~~Cpi~~~~~~d 25 (408)
-+||.|+....+
T Consensus 29 q~C~~CG~~~~~ 40 (69)
T PF07282_consen 29 QTCPRCGHRNKK 40 (69)
T ss_pred cCccCccccccc
Confidence 358888877777
No 488
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=26.75 E-value=8.5e+02 Score=26.60 Aligned_cols=220 Identities=16% Similarity=0.144 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhh-ChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKE-SDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED 176 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~-~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~ 176 (408)
.+.++.++.-+++.... ..+.+.+|.--.+. .+..|..+..+ |++..+++.|.....-..+.-+..+|..|.. .+
T Consensus 331 ~dd~~yiLStlq~~~~~m~trCLSaISla~Kc~~p~FR~~lRa~-G~v~~vfkalmDs~~~d~Lsl~tsalMylLs--~d 407 (865)
T KOG2152|consen 331 TDDLEYILSTLQSALLPMETRCLSAISLADKCVMPDFRMHLRAH-GMVDAVFKALMDSHEDDLLSLCTSALMYLLS--RD 407 (865)
T ss_pred hhhHHHHHhhhhhccccHHHHHHhhhhhhhhccChHHHHHHHHc-ccHHHHHHHHhccccchhhHHHHHHHHHHHh--hh
Confidence 35667777777776332 44444444322222 47889999999 9999999999775511111222223333332 11
Q ss_pred hHHHHHHHhccCcccHHHHHHHHhc---CCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHH
Q 036338 177 QQHLMNLILKRDQDCLNSLLLVLKQ---QESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEA 253 (408)
Q Consensus 177 ~~~~~~~i~~~~~g~i~~Lv~lL~~---~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 253 (408)
-. -+ ..+---+...+.||+- +++.+.+..-...+...- ...++.+-. |+=.+=..+ ++. ...-...
T Consensus 408 ~l----nm-dldf~Slelmi~LL~~ek~~gS~e~~~~~~n~~~evi--r~L~e~~~~--gG~~~h~n~-~~~-t~~~~~l 476 (865)
T KOG2152|consen 408 KL----NM-DLDFLSLELMIHLLRLEKFEGSHESRDKFTNLVKEVI--RSLCELQLR--GGQKVHLNM-RNE-TLGPSSL 476 (865)
T ss_pred hh----cc-cccchhHHHHHHHHhhhcccCChhhHHHHHHHHHHHH--HHHHHHHHh--cCCcccccc-cCC-CCCchhh
Confidence 11 01 0022335666667752 226666633222211110 000011100 110000000 010 1111134
Q ss_pred HHHH-HHHhccC---cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHH
Q 036338 254 SLSC-LITISSS---KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQ 328 (408)
Q Consensus 254 A~~a-L~~Ls~~---~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~ 328 (408)
+..+ +..|++. +.-+..+..-|+...++.-+.... . ....++....-....+.++.+|++-+. ++.
T Consensus 477 amet~vl~lsSk~~~d~~k~elr~Lg~lq~iv~~i~~~~-~--------~~~~~~~e~~~~~tL~rC~rvles~s~hn~s 547 (865)
T KOG2152|consen 477 AMETLVLILSSKRAGDWFKSELRNLGGLQHIVSKIETNV-S--------PTSDNGDESSVILTLERCLRVLESVSVHNGS 547 (865)
T ss_pred hhheeEEEEeccccchhHHHHHHhcchHHHHHHHHHhcc-C--------cCCCCcchhhHHHhHHHHHHHhhcccccCcc
Confidence 5555 4444442 235777778899999988876410 0 000011101112334888899999887 688
Q ss_pred HHHHHHhhcCchH
Q 036338 329 GRMEICQDAALLN 341 (408)
Q Consensus 329 ~~~~~~~~~g~i~ 341 (408)
|+..+...+-++.
T Consensus 548 nq~yLis~gs~i~ 560 (865)
T KOG2152|consen 548 NQGYLISLGSGIL 560 (865)
T ss_pred hhHHHHhccCChh
Confidence 8888887654443
No 489
>COG3809 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.45 E-value=15 Score=27.43 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=9.8
Q ss_pred ccccCccccCCCce
Q 036338 14 FRCPISLDVMKSPV 27 (408)
Q Consensus 14 ~~Cpi~~~~~~dPv 27 (408)
+.||+|.--|.--+
T Consensus 2 llCP~C~v~l~~~~ 15 (88)
T COG3809 2 LLCPICGVELVMSV 15 (88)
T ss_pred cccCcCCceeeeee
Confidence 47999987665433
No 490
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=26.13 E-value=7.1e+02 Score=27.08 Aligned_cols=153 Identities=12% Similarity=0.035 Sum_probs=88.3
Q ss_pred HHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHH--HHHHhcc
Q 036338 166 VLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLA--ETVKSLS 243 (408)
Q Consensus 166 ~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~--~Lv~lL~ 243 (408)
+|.++.. .....++..+ +.|++..+.+.++.-...+.+..+...+.+++...+.+..... .-.+. .+-.++.
T Consensus 494 ~l~~~t~--~~~~~C~~~l---~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~-~~~~~~~~f~~~~~ 567 (699)
T KOG3665|consen 494 ALWNITD--ENPETCKEFL---DNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMI-FEFIDFSVFKVLLN 567 (699)
T ss_pred HHHhhhc--CCHHHHHHHH---hcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHHHh
Confidence 4556554 3333346655 8999999999998543778899999999999987655444332 11122 2222333
Q ss_pred cCCCHHHHHHHHHHHHHhccCcc------------------------hHHHHHhcCcHHH-HHHHhccCCCCCCCCCCCC
Q 036338 244 LDSDRRLIEASLSCLITISSSKR------------------------AKTKLINHKLITE-LGKLITDGHNGNGSGNGNG 298 (408)
Q Consensus 244 ~~~~~~~~~~A~~aL~~Ls~~~~------------------------n~~~~~~~G~i~~-Lv~lL~~~~~~~~~~~~~~ 298 (408)
.-.+.+..-.|++.|..+..+.+ ..........+.+ +..++..
T Consensus 568 ~w~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~------------ 635 (699)
T KOG3665|consen 568 KWDSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRL------------ 635 (699)
T ss_pred hcchhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcc------------
Confidence 32233566667777776655322 1111112222333 4444433
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHHhhcCchHHHHH
Q 036338 299 NGNGNGSGNGTVLITEKALRLVEILST-TKQGRMEICQDAALLNGVVQ 345 (408)
Q Consensus 299 ~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~~g~i~~lv~ 345 (408)
...+..+-.|++++.++.. .+++.+.+.. .|+++.+.+
T Consensus 636 --------s~~~g~~lWal~ti~~~~~~~~~~~~~~~~-~~~~~~~~~ 674 (699)
T KOG3665|consen 636 --------SKSDGSQLWALWTIKNVLEQNKEYCKLVRE-SNGFELIEN 674 (699)
T ss_pred --------cCCCchHHHHHHHHHHHHHcChhhhhhhHh-ccchhhhhh
Confidence 2356777888888888886 4665554444 477775554
No 491
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=25.93 E-value=7e+02 Score=25.24 Aligned_cols=137 Identities=18% Similarity=0.230 Sum_probs=84.5
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcc---cC------CCHHHHHHHHHHHHHhccC
Q 036338 194 SLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLS---LD------SDRRLIEASLSCLITISSS 264 (408)
Q Consensus 194 ~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~---~~------~~~~~~~~A~~aL~~Ls~~ 264 (408)
.++..|.+|....-+......+.-|+.+.+.-.-+.. .--+..|..+-+ .+ .+..+.-.|+.+|.|+..+
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~-~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~ 127 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTN-DQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFH 127 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccc-hHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhc
Confidence 4566677763345556677777788876654444332 222333333332 11 1457888999999999886
Q ss_pred cc-hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHh-CCHHHHHHHHhhcCchHH
Q 036338 265 KR-AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILS-TTKQGRMEICQDAALLNG 342 (408)
Q Consensus 265 ~~-n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~-~~~~~~~~~~~~~g~i~~ 342 (408)
.. .+....+...+..+++.+.....+ +-...+.-.-+..|.-|. ...+.|.++....+|++.
T Consensus 128 Sq~~q~~~~~~~~~~~ll~~v~~~~er----------------~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~ 191 (532)
T KOG4464|consen 128 SQRAQDLFLENPLTGKLLQRVLGEFER----------------NFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLEL 191 (532)
T ss_pred cHHHHHHHHhhhhHHHHHHHHHHHHHh----------------cCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHH
Confidence 54 666667877777777776532000 112345556666676664 357889999887889997
Q ss_pred HHHHH
Q 036338 343 VVQKM 347 (408)
Q Consensus 343 lv~~l 347 (408)
+-+.+
T Consensus 192 lt~~l 196 (532)
T KOG4464|consen 192 LTNWL 196 (532)
T ss_pred HHHHh
Confidence 76643
No 492
>PF13834 DUF4193: Domain of unknown function (DUF4193)
Probab=25.88 E-value=26 Score=27.55 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=22.4
Q ss_pred CCcccccCccccCCCceec--CCCCcccHhh
Q 036338 11 PSFFRCPISLDVMKSPVSL--CTGVTYDRAS 39 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~--~cgh~f~r~c 39 (408)
.++|+|.-|.-+...--+. .-|+.||+.|
T Consensus 68 ~DEFTCssCFLV~HRSqLa~~~~g~~iC~DC 98 (99)
T PF13834_consen 68 ADEFTCSSCFLVHHRSQLAREKDGQPICRDC 98 (99)
T ss_pred CCceeeeeeeeEechhhhccccCCCEecccc
Confidence 4779999999887765444 3589999887
No 493
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=25.45 E-value=2.9e+02 Score=22.14 Aligned_cols=69 Identities=23% Similarity=0.313 Sum_probs=47.0
Q ss_pred cHHHHHHHHh-cCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCc
Q 036338 191 CLNSLLLVLK-QQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSK 265 (408)
Q Consensus 191 ~i~~Lv~lL~-~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~ 265 (408)
.+|.+.+.|. +. ..+.|..+-.++..|+..-.-...+.. ..+..+++-.... +. .+.++.+|..++...
T Consensus 7 lLP~l~~~L~~s~-~~d~~~a~ymIl~~La~k~~L~~~~l~--~l~~~i~~~~~~~-~~--~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSS-SPDLQAAAYMILSVLASKVPLSDEVLN--ALMESILKNWTQE-TV--QRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCC-cHHHHHHHHHHHHHHHhhcCCcHHHHH--HHHHHHHhccccc-hh--HHHHHHHHHHHHHcc
Confidence 4788888888 55 789999999999999876544344333 2455555544443 22 578899999888655
No 494
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=25.36 E-value=2e+02 Score=23.15 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=31.9
Q ss_pred cHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhh
Q 036338 191 CLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAE 230 (408)
Q Consensus 191 ~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~ 230 (408)
+|+.|+.-|... +.++...|..+|...+.+++.-+.+..
T Consensus 9 ~i~lLv~QL~D~-~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDP-SPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 488899999988 889999999999999987755555543
No 495
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=25.16 E-value=7.5e+02 Score=26.96 Aligned_cols=120 Identities=15% Similarity=0.119 Sum_probs=67.1
Q ss_pred ChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHH---HHh---ccCccc----HHHHHHHHhcCCChHHHHH
Q 036338 142 GLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMN---LIL---KRDQDC----LNSLLLVLKQQESVDSRIE 210 (408)
Q Consensus 142 G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~---~i~---~~~~g~----i~~Lv~lL~~~~~~~~~~~ 210 (408)
|.+.-++.++...- ..+..+.....|.++.....+-...|. .+. .-.+|. +..++.+|.+. +.-.|..
T Consensus 240 ~~~aeli~~isde~n~~~l~edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdse-s~tlRc~ 318 (1128)
T COG5098 240 GLIAELIPSISDELNRCALKEDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSE-SFTLRCC 318 (1128)
T ss_pred HHHHHHHHHhHHHhhhhhhhcccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhccc-chhHHHH
Confidence 55555666655433 334446667777776542111100011 110 002333 56788999988 8888887
Q ss_pred HHHHHHHhhcCcchhhHHhh-----hcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338 211 SLRLLEFIAGDADSKVKIAE-----RDGLLAETVKSLSLDSDRRLIEASLSCLITISS 263 (408)
Q Consensus 211 Aa~~L~~La~~~~~~~~i~~-----~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~ 263 (408)
-..+..|+..+-.-...+.+ -...+..|+.-|.+. +|-++-.|+..+-.++.
T Consensus 319 ~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~-~py~RtKalqv~~kifd 375 (1128)
T COG5098 319 FLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDT-YPYTRTKALQVLEKIFD 375 (1128)
T ss_pred HHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHh
Confidence 77777777643211111111 123466666666664 88899889888877754
No 496
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=25.05 E-value=1.3e+02 Score=27.29 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=18.9
Q ss_pred CCCCcccHhhHHHHHhc-CCCCCCCcccccCC
Q 036338 30 CTGVTYDRASIQRWLDS-GNNTCPATMQVLQS 60 (408)
Q Consensus 30 ~cgh~f~r~cI~~~~~~-~~~~CP~~~~~l~~ 60 (408)
.|++.|.+.-+...... ....||.|+..+.+
T Consensus 114 ~C~~~~~~~~~~~~~~~~~~p~C~~Cg~~lrP 145 (218)
T cd01407 114 KCGKEYPRDELQADIDREEVPRCPKCGGLLRP 145 (218)
T ss_pred CCcCCCcHHHHhHhhccCCCCcCCCCCCccCC
Confidence 57777766543333332 24679999877654
No 497
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=25.05 E-value=23 Score=34.09 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=27.7
Q ss_pred cccccCccccCCCceec----CCC--CcccHhhHHHHHhcCCCCCCCcccc
Q 036338 13 FFRCPISLDVMKSPVSL----CTG--VTYDRASIQRWLDSGNNTCPATMQV 57 (408)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~----~cg--h~f~r~cI~~~~~~~~~~CP~~~~~ 57 (408)
.-.||+|+..=.--++. .-| |-+|.-|=.+|-- ....||.|+..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~-~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHY-VRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccc-cCccCCCCCCC
Confidence 34899999743222222 245 5567888777733 24569999864
No 498
>PF13811 DUF4186: Domain of unknown function (DUF4186)
Probab=24.74 E-value=36 Score=27.24 Aligned_cols=21 Identities=24% Similarity=0.550 Sum_probs=14.7
Q ss_pred CceecC--CCCcccHhhHHHHHh
Q 036338 25 SPVSLC--TGVTYDRASIQRWLD 45 (408)
Q Consensus 25 dPv~~~--cgh~f~r~cI~~~~~ 45 (408)
.||.+. =--|-||.||++|=.
T Consensus 64 HPVFiAQHATatCCRgCL~KWH~ 86 (111)
T PF13811_consen 64 HPVFIAQHATATCCRGCLEKWHG 86 (111)
T ss_pred CCeeeecCCCccchHHHHHHHhC
Confidence 487652 223679999999954
No 499
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=24.52 E-value=52 Score=35.18 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=22.3
Q ss_pred cccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 15 RCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 15 ~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
.||-|+.. .+-|+.||.+|=. -+ ....||.|+..+..
T Consensus 3 ~Cp~Cg~~------n~~~akFC~~CG~-~l--~~~~Cp~CG~~~~~ 39 (645)
T PRK14559 3 ICPQCQFE------NPNNNRFCQKCGT-SL--THKPCPQCGTEVPV 39 (645)
T ss_pred cCCCCCCc------CCCCCccccccCC-CC--CCCcCCCCCCCCCc
Confidence 58888774 4567778877710 00 11358888876544
No 500
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.42 E-value=2.3e+02 Score=29.04 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhh-hhhhhhcCChHHHHHHHhhcC-cchhhHHHHHHHHH
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDEN-KTFLAKFDGLVVMLVEILSNV-NDVNMLKQVIRVLD 168 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~-r~~i~~~~G~i~~Lv~lL~s~-~~~~~~e~A~~~L~ 168 (408)
++.++.|.+++.+.+.. +..|+..|..+++..... ...|++. +++.-+|.+.+.. .+.++++.++..|-
T Consensus 37 ~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k-~fL~emVk~~k~~~~~~~Vr~kiL~LI~ 108 (470)
T KOG1087|consen 37 KEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASK-EFLNEMVKRPKNKPRDLKVREKILELID 108 (470)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHHHhccccCCcchhHHHHHHHHHH
Confidence 67899999999987666 889999888888765554 4478887 9999999999877 34555587776654
Done!