Query 036338
Match_columns 408
No_of_seqs 348 out of 2423
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 20:07:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/036338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/036338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 1.6E-28 5.6E-33 239.5 22.7 244 116-389 49-334 (354)
2 3nmz_A APC variant protein; pr 100.0 3.1E-27 1.1E-31 237.3 22.6 244 117-389 166-450 (458)
3 1xm9_A Plakophilin 1; armadill 99.9 5.5E-26 1.9E-30 229.7 25.0 264 101-390 3-361 (457)
4 1xm9_A Plakophilin 1; armadill 99.9 5.2E-26 1.8E-30 229.9 21.1 259 99-389 43-449 (457)
5 3l6x_A Catenin delta-1; cateni 99.9 2E-25 6.7E-30 229.4 23.4 268 99-391 47-386 (584)
6 3nmz_A APC variant protein; pr 99.9 2E-25 6.7E-30 224.3 22.8 261 99-389 69-408 (458)
7 3l6x_A Catenin delta-1; cateni 99.9 4.2E-25 1.4E-29 226.9 22.6 260 99-389 89-476 (584)
8 3nmw_A APC variant protein; AR 99.9 2.1E-25 7.2E-30 217.5 19.2 221 99-347 72-314 (354)
9 3now_A UNC-45 protein, SD10334 99.9 3.8E-24 1.3E-28 226.8 26.9 260 99-389 420-737 (810)
10 3now_A UNC-45 protein, SD10334 99.9 1.4E-24 4.9E-29 230.0 22.4 260 100-389 495-782 (810)
11 3tt9_A Plakophilin-2; cell adh 99.9 2.2E-24 7.6E-29 197.4 19.1 200 101-325 9-229 (233)
12 3ul1_B Importin subunit alpha- 99.9 2.6E-24 8.8E-29 220.4 20.6 259 101-389 58-345 (510)
13 3ul1_B Importin subunit alpha- 99.9 8E-24 2.7E-28 216.7 23.4 259 99-389 99-387 (510)
14 3tpo_A Importin subunit alpha- 99.9 3E-23 1E-27 213.4 25.5 259 99-389 118-406 (529)
15 4hxt_A De novo protein OR329; 99.9 9E-23 3.1E-27 187.8 26.1 235 101-389 3-241 (252)
16 3tpo_A Importin subunit alpha- 99.9 4.5E-23 1.5E-27 212.1 24.1 259 99-388 161-448 (529)
17 4db8_A Armadillo-repeat protei 99.9 7.6E-23 2.6E-27 189.2 20.9 236 99-388 11-250 (252)
18 4b8j_A Importin subunit alpha- 99.9 1.8E-22 6.2E-27 207.0 25.6 262 99-389 73-358 (528)
19 3tt9_A Plakophilin-2; cell adh 99.9 6.5E-23 2.2E-27 187.6 18.5 218 142-388 8-228 (233)
20 4b8j_A Importin subunit alpha- 99.9 1.7E-21 5.9E-26 199.7 29.2 257 100-389 117-400 (528)
21 4db6_A Armadillo repeat protei 99.9 5.9E-22 2E-26 178.2 21.7 196 100-326 12-210 (210)
22 1wgm_A Ubiquitin conjugation f 99.9 3.9E-23 1.3E-27 163.4 8.2 77 4-81 13-90 (98)
23 1jdh_A Beta-catenin; beta-cate 99.9 7.6E-21 2.6E-25 194.1 26.6 279 99-389 58-385 (529)
24 2kr4_A Ubiquitin conjugation f 99.9 3.7E-23 1.3E-27 159.4 6.3 76 5-81 6-81 (85)
25 2kre_A Ubiquitin conjugation f 99.9 6.4E-23 2.2E-27 162.8 7.5 75 6-81 22-96 (100)
26 1wa5_B Importin alpha subunit; 99.9 8.1E-21 2.8E-25 195.0 24.9 258 100-389 87-370 (530)
27 1wa5_B Importin alpha subunit; 99.9 2.2E-20 7.4E-25 191.8 27.7 257 100-389 130-412 (530)
28 2jdq_A Importin alpha-1 subuni 99.9 5.2E-20 1.8E-24 183.9 28.5 257 100-389 64-347 (450)
29 2z6h_A Catenin beta-1, beta-ca 99.9 2.2E-20 7.4E-25 196.4 26.9 279 99-389 55-382 (644)
30 1jdh_A Beta-catenin; beta-cate 99.9 4.8E-20 1.7E-24 188.1 27.2 260 99-389 16-339 (529)
31 1xqr_A HSPBP1 protein; armadil 99.9 1.3E-19 4.5E-24 172.2 27.7 225 116-388 57-286 (296)
32 2z6h_A Catenin beta-1, beta-ca 99.9 3.9E-20 1.3E-24 194.5 25.7 260 99-389 13-336 (644)
33 2jdq_A Importin alpha-1 subuni 99.9 1.6E-19 5.4E-24 180.4 28.2 259 99-389 106-390 (450)
34 4db8_A Armadillo-repeat protei 99.9 1.3E-20 4.4E-25 174.2 18.6 196 99-325 53-251 (252)
35 4db6_A Armadillo repeat protei 99.8 9.8E-20 3.3E-24 163.6 20.6 195 142-389 12-209 (210)
36 2z6g_A B-catenin; FULL-length, 99.8 3E-19 1E-23 191.6 27.3 280 99-389 191-518 (780)
37 4hxt_A De novo protein OR329; 99.8 1.6E-19 5.5E-24 166.0 21.4 196 100-326 44-242 (252)
38 1t1h_A Gspef-atpub14, armadill 99.8 2.3E-21 7.9E-26 147.2 6.3 75 7-81 2-76 (78)
39 2f42_A STIP1 homology and U-bo 99.8 2.5E-21 8.6E-26 168.4 6.8 76 6-81 99-174 (179)
40 2z6g_A B-catenin; FULL-length, 99.8 3E-19 1E-23 191.7 24.1 260 99-389 149-472 (780)
41 2yu4_A E3 SUMO-protein ligase 99.8 2.3E-20 7.8E-25 146.7 6.4 73 9-81 3-84 (94)
42 2c2l_A CHIP, carboxy terminus 99.8 8.3E-20 2.8E-24 172.4 7.2 77 5-81 200-276 (281)
43 1xqr_A HSPBP1 protein; armadil 99.8 2.9E-17 9.8E-22 156.1 20.1 207 99-327 80-289 (296)
44 3opb_A SWI5-dependent HO expre 99.8 2.7E-17 9.3E-22 171.7 21.0 261 99-389 375-728 (778)
45 3opb_A SWI5-dependent HO expre 99.7 5.7E-17 2E-21 169.3 21.0 275 99-389 333-683 (778)
46 3ztg_A E3 ubiquitin-protein li 99.7 3.6E-18 1.2E-22 133.7 8.1 77 5-81 5-84 (92)
47 3fl2_A E3 ubiquitin-protein li 99.7 5.2E-17 1.8E-21 134.3 5.2 70 10-79 49-119 (124)
48 3htk_C E3 SUMO-protein ligase 99.6 8E-17 2.7E-21 146.4 4.5 71 9-79 177-251 (267)
49 2bay_A PRE-mRNA splicing facto 99.6 5.3E-17 1.8E-21 116.3 1.8 54 13-67 3-57 (61)
50 1z6u_A NP95-like ring finger p 99.6 2.2E-16 7.5E-21 134.7 5.2 69 10-78 75-144 (150)
51 3l11_A E3 ubiquitin-protein li 99.6 1.7E-16 5.9E-21 129.4 3.2 78 1-78 3-87 (115)
52 2egp_A Tripartite motif-contai 99.6 5.6E-17 1.9E-21 123.1 -1.1 67 5-71 4-76 (79)
53 2y43_A E3 ubiquitin-protein li 99.6 1.1E-15 3.6E-20 121.3 5.4 71 10-81 19-90 (99)
54 3lrq_A E3 ubiquitin-protein li 99.6 1E-15 3.5E-20 121.5 4.8 71 10-80 19-90 (100)
55 2ecw_A Tripartite motif-contai 99.6 4.5E-16 1.5E-20 119.6 2.5 67 6-72 12-83 (85)
56 2ecv_A Tripartite motif-contai 99.6 6.3E-16 2.2E-20 118.7 2.1 66 6-71 12-82 (85)
57 2ysl_A Tripartite motif-contai 99.6 4.3E-15 1.5E-19 110.7 6.4 62 2-63 9-72 (73)
58 2yur_A Retinoblastoma-binding 99.5 5.6E-15 1.9E-19 110.5 6.5 61 6-66 8-71 (74)
59 3grl_A General vesicular trans 99.5 5.9E-13 2E-17 135.9 23.4 262 99-387 20-340 (651)
60 2ecy_A TNF receptor-associated 99.5 4.7E-15 1.6E-19 108.3 5.9 57 7-63 9-65 (66)
61 1jm7_B BARD1, BRCA1-associated 99.5 1.4E-15 4.8E-20 124.4 3.4 69 10-81 19-88 (117)
62 2ckl_A Polycomb group ring fin 99.5 2.6E-15 8.7E-20 121.0 4.7 69 9-78 11-84 (108)
63 2csy_A Zinc finger protein 183 99.5 3.2E-15 1.1E-19 113.9 4.6 65 6-72 8-72 (81)
64 3hct_A TNF receptor-associated 99.5 3.1E-15 1.1E-19 122.5 4.2 70 8-77 13-82 (118)
65 2djb_A Polycomb group ring fin 99.5 1.1E-14 3.8E-19 108.3 6.7 60 6-66 8-68 (72)
66 2ysj_A Tripartite motif-contai 99.5 1.1E-14 3.9E-19 105.2 6.0 51 4-54 11-63 (63)
67 2ckl_B Ubiquitin ligase protei 99.5 4.3E-15 1.5E-19 129.0 3.8 71 9-79 50-122 (165)
68 3m62_A Ubiquitin conjugation f 99.5 1.1E-14 3.7E-19 153.8 6.3 74 7-81 885-959 (968)
69 1jm7_A BRCA1, breast cancer ty 99.5 8.1E-15 2.8E-19 118.8 4.1 69 10-78 18-88 (112)
70 4ayc_A E3 ubiquitin-protein li 99.5 1.8E-14 6E-19 121.3 4.4 64 11-77 51-114 (138)
71 1rmd_A RAG1; V(D)J recombinati 99.5 1E-14 3.6E-19 119.0 2.5 68 9-76 19-87 (116)
72 1g25_A CDK-activating kinase a 99.5 2.7E-14 9.1E-19 103.9 3.8 55 12-66 2-61 (65)
73 3knv_A TNF receptor-associated 99.5 1.1E-14 3.9E-19 122.6 2.0 67 9-75 27-102 (141)
74 3hcs_A TNF receptor-associated 99.4 5.1E-14 1.7E-18 122.8 4.0 69 8-76 13-81 (170)
75 2ecj_A Tripartite motif-contai 99.4 2.6E-13 8.9E-18 96.1 5.4 49 6-54 8-58 (58)
76 2ct2_A Tripartite motif protei 99.4 3.7E-13 1.3E-17 103.9 6.4 56 6-61 8-69 (88)
77 3ng2_A RNF4, snurf, ring finge 99.4 1.2E-13 4.1E-18 102.2 2.7 58 8-66 5-69 (71)
78 1e4u_A Transcriptional repress 99.4 5.6E-13 1.9E-17 100.2 5.6 57 7-63 5-65 (78)
79 2d8t_A Dactylidin, ring finger 99.4 3.6E-13 1.2E-17 99.7 4.0 51 9-60 11-61 (71)
80 2ea6_A Ring finger protein 4; 99.3 7.7E-13 2.6E-17 97.1 4.0 54 6-60 8-68 (69)
81 2ect_A Ring finger protein 126 99.3 2.4E-12 8.1E-17 97.1 5.9 60 6-66 8-70 (78)
82 2xeu_A Ring finger protein 4; 99.3 5.3E-13 1.8E-17 96.5 1.8 54 12-66 2-62 (64)
83 3grl_A General vesicular trans 99.3 2.2E-10 7.7E-15 117.0 20.4 224 99-348 121-370 (651)
84 1bor_A Transcription factor PM 99.2 4.8E-12 1.7E-16 88.9 2.6 46 11-60 4-49 (56)
85 2ecn_A Ring finger protein 141 99.2 5.4E-12 1.8E-16 93.0 3.0 54 7-62 9-62 (70)
86 2ep4_A Ring finger protein 24; 99.2 1.6E-11 5.6E-16 91.4 5.6 56 4-60 6-64 (74)
87 2ecm_A Ring finger and CHY zin 99.2 1.9E-11 6.5E-16 85.4 4.2 47 12-59 4-54 (55)
88 1chc_A Equine herpes virus-1 r 99.1 2.2E-11 7.7E-16 89.0 4.3 48 12-60 4-52 (68)
89 4ap4_A E3 ubiquitin ligase RNF 99.1 1.4E-11 4.9E-16 102.4 2.6 54 11-65 5-65 (133)
90 2kiz_A E3 ubiquitin-protein li 99.1 7.6E-11 2.6E-15 86.5 5.8 53 7-60 8-63 (69)
91 1iym_A EL5; ring-H2 finger, ub 99.1 4.7E-11 1.6E-15 83.4 4.4 48 10-58 2-53 (55)
92 2l0b_A E3 ubiquitin-protein li 99.1 5.2E-11 1.8E-15 92.5 4.6 50 10-60 37-89 (91)
93 1x4j_A Ring finger protein 38; 99.1 7.2E-11 2.5E-15 88.1 3.8 49 11-60 21-72 (75)
94 1v87_A Deltex protein 2; ring- 99.0 1.2E-10 4.2E-15 94.3 5.0 50 11-60 23-94 (114)
95 4ic3_A E3 ubiquitin-protein li 99.0 5.2E-11 1.8E-15 88.7 1.8 46 10-60 21-67 (74)
96 1oyz_A Hypothetical protein YI 99.0 1.7E-08 5.6E-13 94.2 18.2 214 99-383 53-276 (280)
97 3ltm_A Alpha-REP4; protein eng 99.0 4.8E-08 1.6E-12 87.1 19.8 185 99-389 18-203 (211)
98 3ltj_A Alpharep-4; protein eng 99.0 8.3E-08 2.8E-12 84.8 21.2 152 99-323 13-165 (201)
99 2ecg_A Baculoviral IAP repeat- 99.0 3.9E-11 1.3E-15 89.7 -1.4 46 10-60 22-68 (75)
100 2y1n_A E3 ubiquitin-protein li 98.9 4.9E-10 1.7E-14 108.3 4.7 49 13-61 332-380 (389)
101 1wim_A KIAA0161 protein; ring 98.9 2E-10 6.8E-15 89.7 0.7 67 11-78 3-83 (94)
102 1oyz_A Hypothetical protein YI 98.9 5.2E-08 1.8E-12 90.8 17.3 215 101-389 24-250 (280)
103 3ltm_A Alpha-REP4; protein eng 98.9 6.2E-08 2.1E-12 86.3 16.9 134 142-347 19-152 (211)
104 4ap4_A E3 ubiquitin ligase RNF 98.9 3.2E-10 1.1E-14 94.1 0.8 55 11-66 70-131 (133)
105 4gmo_A Putative uncharacterize 98.9 2.1E-08 7.4E-13 105.8 14.7 199 99-324 33-257 (684)
106 3ltj_A Alpharep-4; protein eng 98.8 1.4E-07 4.7E-12 83.4 16.2 175 142-389 14-198 (201)
107 2ecl_A Ring-box protein 2; RNF 98.8 2.9E-09 9.9E-14 80.6 3.8 48 12-60 14-76 (81)
108 2vje_A E3 ubiquitin-protein li 98.8 2.5E-09 8.7E-14 77.0 3.2 48 11-59 6-56 (64)
109 2vje_B MDM4 protein; proto-onc 98.7 3.4E-09 1.2E-13 76.1 2.8 47 12-59 6-55 (63)
110 2yho_A E3 ubiquitin-protein li 98.7 2.4E-09 8.2E-14 80.6 1.3 46 10-60 15-61 (79)
111 4gmo_A Putative uncharacterize 98.7 1.7E-07 5.7E-12 99.0 13.7 149 190-349 34-193 (684)
112 2ea5_A Cell growth regulator w 98.7 2.3E-08 7.8E-13 72.9 4.9 47 9-60 11-58 (68)
113 3dpl_R Ring-box protein 1; ubi 98.6 1.9E-08 6.5E-13 79.9 4.5 46 13-59 37-100 (106)
114 3t6p_A Baculoviral IAP repeat- 98.6 7.7E-09 2.6E-13 99.4 1.8 45 11-60 293-338 (345)
115 2d8s_A Cellular modulator of i 98.4 2.3E-07 7.8E-12 69.7 5.4 51 10-60 12-70 (80)
116 4fdd_A Transportin-1; heat rep 98.4 1.9E-05 6.3E-10 85.2 20.5 275 99-389 127-429 (852)
117 4fdd_A Transportin-1; heat rep 98.3 2.3E-05 7.8E-10 84.5 19.5 192 100-325 215-429 (852)
118 4a0k_B E3 ubiquitin-protein li 98.3 8.9E-08 3E-12 77.2 0.2 45 14-59 49-111 (117)
119 1b3u_A Protein (protein phosph 98.2 7.3E-05 2.5E-09 76.2 20.4 185 102-325 166-353 (588)
120 3b2a_A TON_1937, putative unch 98.2 9.7E-05 3.3E-09 65.9 17.9 248 67-389 10-261 (265)
121 2qk2_A LP04448P; mini spindles 98.1 4.9E-05 1.7E-09 69.0 14.6 181 105-325 20-205 (242)
122 1ibr_B P95, importin beta-1 su 98.1 0.00048 1.7E-08 67.8 22.2 261 99-389 127-437 (462)
123 1b3u_A Protein (protein phosph 98.1 0.00013 4.6E-09 74.2 17.9 24 366-389 564-587 (588)
124 1te4_A Conserved protein MTH18 98.0 1.1E-06 3.8E-11 72.3 1.8 118 142-322 12-130 (131)
125 2vgl_B AP-2 complex subunit be 98.0 3.1E-05 1E-09 80.1 12.4 178 99-326 12-190 (591)
126 2qk1_A Protein STU2; STU2P, XM 98.0 8.5E-05 2.9E-09 68.2 12.9 193 105-325 21-220 (249)
127 1u6g_C TIP120 protein, CAND1; 97.9 0.00019 6.6E-09 80.3 18.1 250 99-389 5-284 (1230)
128 2vgl_B AP-2 complex subunit be 97.9 0.00034 1.2E-08 72.3 18.6 167 101-285 122-293 (591)
129 3dad_A FH1/FH2 domain-containi 97.9 0.0008 2.7E-08 63.5 18.5 179 100-286 118-316 (339)
130 1te4_A Conserved protein MTH18 97.8 4.6E-06 1.6E-10 68.5 1.8 120 99-261 11-131 (131)
131 3vk6_A E3 ubiquitin-protein li 97.8 1.5E-05 5E-10 61.1 3.8 46 15-60 3-49 (101)
132 1ibr_B P95, importin beta-1 su 97.7 0.00071 2.4E-08 66.6 15.8 191 104-325 221-437 (462)
133 2ct0_A Non-SMC element 1 homol 97.7 7.8E-05 2.7E-09 54.7 6.3 47 13-59 15-63 (74)
134 2bpt_A Importin beta-1 subunit 97.7 0.002 7E-08 68.7 19.5 197 99-325 497-711 (861)
135 1w63_A Adapter-related protein 97.6 0.0078 2.7E-07 62.4 22.4 190 104-326 74-264 (618)
136 1w63_A Adapter-related protein 97.6 0.002 7E-08 66.8 17.9 174 101-327 35-210 (618)
137 1qgr_A Protein (importin beta 97.4 0.028 9.6E-07 59.9 24.8 258 99-389 127-437 (876)
138 1vyx_A ORF K3, K3RING; zinc-bi 97.4 0.00019 6.4E-09 50.4 4.7 48 12-59 5-58 (60)
139 2bpt_A Importin beta-1 subunit 97.4 0.0021 7E-08 68.7 14.9 188 101-325 325-529 (861)
140 1qgr_A Protein (importin beta 97.3 0.0068 2.3E-07 64.7 17.9 193 102-325 219-437 (876)
141 2qk2_A LP04448P; mini spindles 97.2 0.0057 2E-07 55.1 14.2 146 99-265 55-207 (242)
142 2db0_A 253AA long hypothetical 97.2 0.052 1.8E-06 46.7 18.8 182 99-328 31-214 (253)
143 3k1l_B Fancl; UBC, ring, RWD, 97.2 5.8E-05 2E-09 71.0 0.6 46 14-59 309-372 (381)
144 3b2a_A TON_1937, putative unch 97.2 0.008 2.7E-07 53.7 13.5 146 99-265 74-220 (265)
145 3dad_A FH1/FH2 domain-containi 97.1 0.011 3.8E-07 55.7 15.0 163 146-334 122-298 (339)
146 2jun_A Midline-1; B-BOX, TRIM, 97.1 0.0002 6.8E-09 56.0 2.5 34 12-45 2-38 (101)
147 2vgl_A Adaptor protein complex 96.9 0.11 3.8E-06 53.7 21.5 193 101-336 188-408 (621)
148 2qk1_A Protein STU2; STU2P, XM 96.8 0.018 6E-07 52.5 13.4 153 100-263 60-220 (249)
149 4ady_A RPN2, 26S proteasome re 96.8 0.041 1.4E-06 59.1 17.5 98 192-325 579-676 (963)
150 1u6g_C TIP120 protein, CAND1; 96.7 0.018 6.2E-07 64.3 15.1 172 99-286 47-224 (1230)
151 3i2d_A E3 SUMO-protein ligase 96.7 0.00099 3.4E-08 63.6 3.7 64 12-75 248-315 (371)
152 4ady_A RPN2, 26S proteasome re 96.6 0.1 3.5E-06 56.1 18.7 102 189-325 540-641 (963)
153 2fv2_A RCD1 required for cell 96.5 0.058 2E-06 48.8 14.1 150 117-273 74-234 (268)
154 1ho8_A Vacuolar ATP synthase s 96.4 0.37 1.3E-05 47.7 20.1 200 100-326 77-302 (480)
155 2iw3_A Elongation factor 3A; a 96.3 0.19 6.6E-06 54.4 18.8 247 101-389 15-280 (986)
156 4fo9_A E3 SUMO-protein ligase 96.2 0.0025 8.6E-08 60.6 3.7 63 12-74 214-280 (360)
157 2vgl_A Adaptor protein complex 96.2 0.1 3.5E-06 54.0 16.2 173 101-325 36-216 (621)
158 2iw3_A Elongation factor 3A; a 96.1 0.25 8.6E-06 53.5 19.0 190 102-334 97-292 (986)
159 3ebb_A Phospholipase A2-activa 95.9 0.32 1.1E-05 45.5 16.3 162 116-284 119-284 (304)
160 3nw0_A Non-structural maintena 94.9 0.024 8.2E-07 51.2 4.9 48 13-60 180-229 (238)
161 2db0_A 253AA long hypothetical 94.7 1.8 6.3E-05 37.2 16.9 175 100-324 69-245 (253)
162 1ho8_A Vacuolar ATP synthase s 94.0 1 3.5E-05 44.5 14.4 183 116-324 245-475 (480)
163 4ffb_C Protein STU2; tubulin f 93.4 1.2 4.1E-05 40.5 13.3 187 105-325 14-212 (278)
164 3tjz_B Coatomer subunit gamma; 93.4 0.56 1.9E-05 44.8 11.1 205 64-325 79-316 (355)
165 2of3_A ZYG-9; multifunctional 93.3 1 3.5E-05 41.1 12.3 179 106-324 52-235 (266)
166 3tjz_B Coatomer subunit gamma; 93.1 4.6 0.00016 38.4 17.0 100 192-325 106-205 (355)
167 3oc3_A Helicase MOT1, MOT1; re 93.0 1.3 4.3E-05 44.8 13.0 236 101-385 175-432 (800)
168 1weo_A Cellulose synthase, cat 92.6 0.21 7.1E-06 37.1 5.2 47 13-59 16-69 (93)
169 3eg5_B Protein diaphanous homo 92.5 7.6 0.00026 37.3 18.0 173 105-286 71-275 (383)
170 2fv2_A RCD1 required for cell 92.3 6.2 0.00021 35.6 18.0 207 100-336 3-235 (268)
171 2f31_A Diaphanous protein homo 92.1 6.2 0.00021 35.0 17.1 173 105-286 5-209 (233)
172 3c2g_A SYS-1 protein; beta-cat 90.9 5.6 0.00019 37.7 14.1 119 159-286 259-378 (619)
173 3ebb_A Phospholipase A2-activa 90.9 5.4 0.00018 37.0 14.4 160 143-333 104-271 (304)
174 2bnx_A Diaphanous protein homo 88.8 17 0.00059 34.8 17.8 173 105-286 9-213 (386)
175 2cs3_A Protein C14ORF4, MY039 88.7 0.54 1.9E-05 34.0 4.2 44 10-53 12-63 (93)
176 1wa5_C Importin alpha RE-expor 87.7 19 0.00065 38.7 18.0 110 192-326 401-526 (960)
177 4hat_C Exportin-1; heat repeat 87.3 6 0.0002 43.2 13.6 119 157-285 467-595 (1023)
178 4ffb_C Protein STU2; tubulin f 85.5 3.7 0.00013 37.2 9.4 143 105-264 60-213 (278)
179 2x1g_F Cadmus; transport prote 83.9 11 0.00037 40.6 13.6 130 158-325 479-615 (971)
180 3mjh_B Early endosome antigen 82.9 0.27 9.2E-06 29.8 0.2 17 12-28 4-20 (34)
181 2of3_A ZYG-9; multifunctional 82.2 14 0.00048 33.5 11.6 66 191-263 168-236 (266)
182 1wa5_C Importin alpha RE-expor 82.1 47 0.0016 35.6 17.8 188 104-324 459-669 (960)
183 2jne_A Hypothetical protein YF 80.5 0.069 2.4E-06 40.3 -3.7 40 14-59 33-72 (101)
184 2kkx_A Uncharacterized protein 79.2 2.7 9.1E-05 31.9 4.6 56 7-63 21-82 (102)
185 2x19_B Importin-13; nuclear tr 77.3 15 0.00051 39.3 11.9 150 157-345 463-619 (963)
186 3u0r_A Apoptosis inhibitor 5; 77.2 15 0.00051 36.3 10.5 75 200-287 38-112 (507)
187 2x19_B Importin-13; nuclear tr 77.0 76 0.0026 33.7 17.4 151 116-285 466-622 (963)
188 2ko5_A Ring finger protein Z; 76.4 3 0.0001 31.3 4.1 49 11-61 26-74 (99)
189 2bay_A PRE-mRNA splicing facto 75.0 1.3 4.3E-05 30.6 1.7 44 48-92 3-49 (61)
190 3m1i_C Exportin-1; heat repeat 73.2 36 0.0012 37.0 13.7 101 156-264 466-570 (1049)
191 2f31_A Diaphanous protein homo 72.2 10 0.00036 33.5 7.6 77 189-266 42-128 (233)
192 1lsh_A Lipovitellin (LV-1N, LV 71.7 71 0.0024 34.9 15.5 89 196-322 446-540 (1056)
193 2jvx_A NF-kappa-B essential mo 70.1 1.3 4.3E-05 25.5 0.6 17 12-28 2-18 (28)
194 4hat_C Exportin-1; heat repeat 69.7 8.4 0.00029 42.1 7.5 99 204-325 466-569 (1023)
195 1x5b_A Signal transducing adap 69.3 10 0.00034 31.7 6.4 91 191-286 53-145 (163)
196 1m3v_A FLIN4, fusion of the LI 68.7 2.7 9.3E-05 33.2 2.6 51 12-63 31-84 (122)
197 2x1g_F Cadmus; transport prote 68.4 1.3E+02 0.0044 32.1 17.5 179 113-325 519-722 (971)
198 1lrv_A LRV, leucine-rich repea 68.4 1.3 4.3E-05 40.0 0.6 32 350-383 209-240 (244)
199 2jrp_A Putative cytoplasmic pr 68.0 0.39 1.3E-05 35.2 -2.4 40 14-59 3-42 (81)
200 2xqn_T Testin, TESS; metal-bin 67.8 3.1 0.0001 32.9 2.7 48 11-61 28-76 (126)
201 3eg5_B Protein diaphanous homo 66.3 20 0.00068 34.3 8.6 138 189-347 108-273 (383)
202 3c2g_A SYS-1 protein; beta-cat 65.9 56 0.0019 31.0 11.0 112 215-349 266-378 (619)
203 2o35_A Hypothetical protein DU 65.6 2.3 7.8E-05 32.1 1.4 12 35-46 43-54 (105)
204 1x5b_A Signal transducing adap 65.5 26 0.00088 29.1 8.1 71 99-170 51-123 (163)
205 3u0r_A Apoptosis inhibitor 5; 65.4 43 0.0015 33.0 10.7 133 99-260 28-160 (507)
206 3fyb_A Protein of unknown func 65.1 2.4 8.1E-05 32.0 1.4 12 35-46 42-53 (104)
207 3zyq_A Hepatocyte growth facto 64.8 11 0.00038 33.2 6.1 71 191-263 46-118 (226)
208 1lrv_A LRV, leucine-rich repea 62.9 1.9 6.6E-05 38.7 0.6 12 70-81 41-52 (244)
209 3zyq_A Hepatocyte growth facto 61.9 25 0.00087 30.9 7.9 72 99-171 44-117 (226)
210 1juq_A ADP-ribosylation factor 61.9 18 0.00063 30.3 6.6 88 191-286 51-145 (171)
211 1mhq_A ADP-ribosylation factor 61.7 16 0.00056 29.9 6.1 89 190-286 38-133 (148)
212 3ldz_A STAM-1, signal transduc 61.6 19 0.00066 29.1 6.5 70 191-263 43-114 (140)
213 3g2s_A C-terminal fragment of 61.5 22 0.00075 29.1 6.9 72 191-264 49-127 (149)
214 3m1i_C Exportin-1; heat repeat 61.1 1.8E+02 0.0061 31.4 16.1 143 99-263 15-166 (1049)
215 3l9t_A Putative uncharacterize 60.1 92 0.0032 27.6 12.7 140 99-266 69-210 (240)
216 1lsh_A Lipovitellin (LV-1N, LV 59.5 1.8E+02 0.006 31.7 15.6 129 103-266 443-579 (1056)
217 1dvp_A HRS, hepatocyte growth 58.5 18 0.00061 31.6 6.2 71 191-263 43-115 (220)
218 2xjy_A Rhombotin-2; oncoprotei 57.9 7.1 0.00024 30.9 3.2 49 11-60 27-78 (131)
219 2bnx_A Diaphanous protein homo 57.5 31 0.0011 33.0 8.2 138 189-347 46-211 (386)
220 1upk_A MO25 protein; transfera 56.1 1.3E+02 0.0045 28.1 14.3 190 104-325 82-283 (341)
221 6rxn_A Rubredoxin; electron tr 54.9 3.8 0.00013 26.5 0.8 13 9-21 26-38 (46)
222 1dvp_A HRS, hepatocyte growth 54.2 36 0.0012 29.6 7.5 71 99-170 41-113 (220)
223 2rgt_A Fusion of LIM/homeobox 54.1 12 0.0004 31.2 4.1 48 11-61 31-78 (169)
224 2cup_A Skeletal muscle LIM-pro 53.3 11 0.00037 28.2 3.4 47 11-60 31-78 (101)
225 2jtn_A LIM domain-binding prot 53.3 9.2 0.00031 32.3 3.3 47 12-61 86-132 (182)
226 1mhq_A ADP-ribosylation factor 52.8 46 0.0016 27.1 7.4 72 99-171 37-115 (148)
227 1e8j_A Rubredoxin; iron-sulfur 51.8 6 0.0002 26.3 1.4 14 8-21 31-44 (52)
228 1upk_A MO25 protein; transfera 50.8 1.6E+02 0.0055 27.5 13.2 142 116-265 140-285 (341)
229 3ldz_A STAM-1, signal transduc 50.7 89 0.003 25.0 8.8 71 144-220 44-114 (140)
230 1rut_X Flinc4, fusion protein 50.5 4.5 0.00015 34.6 0.9 50 11-61 30-82 (188)
231 2jmo_A Parkin; IBR, E3 ligase, 50.3 4.4 0.00015 29.5 0.6 31 13-43 25-68 (80)
232 3vhs_A ATPase wrnip1; zinc fin 50.2 3.8 0.00013 22.6 0.2 11 14-24 7-17 (29)
233 4rxn_A Rubredoxin; electron tr 49.8 5.1 0.00017 26.9 0.8 15 8-22 31-45 (54)
234 3qml_C Protein SLS1, nucleotid 49.0 1.6E+02 0.0056 27.1 11.3 147 147-324 27-188 (315)
235 2ee8_A Protein ODD-skipped-rel 47.6 47 0.0016 24.2 6.4 16 10-25 14-29 (106)
236 1x61_A Thyroid receptor intera 47.1 22 0.00075 24.5 4.0 32 14-45 34-66 (72)
237 3uk3_C Zinc finger protein 217 46.8 8.8 0.0003 24.7 1.7 41 13-60 4-44 (57)
238 1iml_A CRIP, cysteine rich int 46.0 17 0.00057 25.6 3.2 45 11-58 25-71 (76)
239 2kn9_A Rubredoxin; metalloprot 46.0 7.9 0.00027 28.3 1.4 15 8-22 55-69 (81)
240 1wig_A KIAA1808 protein; LIM d 45.4 10 0.00034 26.7 1.9 21 15-35 7-27 (73)
241 1yk4_A Rubredoxin, RD; electro 44.9 6.7 0.00023 26.0 0.8 14 8-21 30-43 (52)
242 1juq_A ADP-ribosylation factor 44.8 1.3E+02 0.0046 24.9 10.8 74 143-221 51-129 (171)
243 2f42_A STIP1 homology and U-bo 44.3 11 0.00036 32.1 2.2 44 49-92 107-152 (179)
244 2v3b_B Rubredoxin 2, rubredoxi 43.7 6.9 0.00024 26.3 0.8 14 9-22 32-45 (55)
245 2ct7_A Ring finger protein 31; 43.2 7 0.00024 28.8 0.8 29 15-43 27-61 (86)
246 3ibv_A Exportin-T; karyopherin 41.9 3.6E+02 0.012 29.0 17.1 214 66-334 21-272 (980)
247 1elk_A Target of MYB1; superhe 41.7 90 0.0031 25.5 7.6 71 99-170 52-128 (157)
248 2lcq_A Putative toxin VAPC6; P 41.6 5.9 0.0002 33.1 0.2 22 30-58 137-158 (165)
249 3gjx_A Exportin-1; transport, 41.6 1.1E+02 0.0037 33.5 10.2 101 156-264 492-596 (1073)
250 1dx8_A Rubredoxin; electron tr 40.4 8.5 0.00029 27.3 0.8 15 8-22 35-49 (70)
251 1wgm_A Ubiquitin conjugation f 39.9 15 0.00052 27.6 2.3 44 48-92 22-68 (98)
252 3pwf_A Rubrerythrin; non heme 39.7 10 0.00035 31.9 1.4 20 30-57 143-162 (170)
253 2lv2_A Insulinoma-associated p 39.0 22 0.00076 25.8 3.0 39 11-60 26-68 (85)
254 2d8x_A Protein pinch; LIM doma 39.0 21 0.0007 24.6 2.8 40 15-63 7-46 (70)
255 2ebt_A Krueppel-like factor 5; 38.6 48 0.0016 23.8 5.0 17 9-25 11-29 (100)
256 3l9t_A Putative uncharacterize 38.2 2.1E+02 0.0072 25.2 10.0 108 192-335 105-218 (240)
257 2kdx_A HYPA, hydrogenase/ureas 37.9 12 0.00042 29.3 1.5 21 30-57 78-99 (119)
258 2lri_C Autoimmune regulator; Z 37.8 40 0.0014 23.3 4.1 45 11-57 10-59 (66)
259 1wg2_A Zinc finger (AN1-like) 37.7 35 0.0012 23.6 3.6 28 11-38 13-41 (64)
260 2dar_A PDZ and LIM domain prot 37.4 24 0.00084 25.7 3.1 41 14-63 26-66 (90)
261 2d8z_A Four and A half LIM dom 37.2 26 0.00088 24.0 3.0 24 16-39 8-31 (70)
262 2epr_A POZ-, at HOOK-, and zin 37.1 40 0.0014 20.6 3.8 36 10-56 9-48 (48)
263 2eps_A POZ-, at HOOK-, and zin 36.9 18 0.00061 23.1 2.0 38 11-59 10-52 (54)
264 3gjx_A Exportin-1; transport, 36.9 4.5E+02 0.015 28.7 15.8 208 66-325 41-275 (1073)
265 2kre_A Ubiquitin conjugation f 36.1 17 0.00058 27.5 2.0 44 48-92 29-74 (100)
266 2gmg_A Hypothetical protein PF 36.0 14 0.00049 28.3 1.5 29 23-57 65-93 (105)
267 1s24_A Rubredoxin 2; electron 35.8 11 0.00038 27.9 0.9 15 8-22 63-77 (87)
268 2jr6_A UPF0434 protein NMA0874 35.4 5.1 0.00017 28.3 -1.0 41 9-66 4-44 (68)
269 2js4_A UPF0434 protein BB2007; 35.1 8.5 0.00029 27.3 0.1 42 9-67 4-45 (70)
270 2yt9_A Zinc finger-containing 35.0 47 0.0016 23.6 4.4 15 12-26 6-20 (95)
271 2dmd_A Zinc finger protein 64, 35.0 40 0.0014 24.1 4.0 47 12-58 7-74 (96)
272 2c2l_A CHIP, carboxy terminus 34.9 16 0.00054 32.7 2.0 44 49-92 209-254 (281)
273 2wbs_A Krueppel-like factor 4; 34.9 32 0.0011 24.2 3.4 15 11-25 3-19 (89)
274 1b8t_A Protein (CRP1); LIM dom 34.8 24 0.00083 29.9 3.1 35 11-45 32-67 (192)
275 1vq8_Z 50S ribosomal protein L 34.5 9.1 0.00031 28.1 0.2 40 12-69 26-66 (83)
276 3gox_A Restriction endonucleas 34.0 23 0.00078 30.2 2.6 46 14-59 76-148 (200)
277 1wfh_A Zinc finger (AN1-like) 33.8 46 0.0016 23.0 3.7 27 12-38 14-41 (64)
278 2l4z_A DNA endonuclease RBBP8, 33.5 24 0.00083 27.7 2.6 38 13-59 61-99 (123)
279 1x6a_A LIMK-2, LIM domain kina 33.3 35 0.0012 24.1 3.3 36 15-59 17-52 (81)
280 3oc3_A Helicase MOT1, MOT1; re 33.1 91 0.0031 31.7 7.1 86 205-324 242-327 (800)
281 1wil_A KIAA1045 protein; ring 33.0 62 0.0021 23.7 4.4 37 6-43 8-47 (89)
282 1nyp_A Pinch protein; LIM doma 32.8 22 0.00076 24.0 2.1 38 15-61 7-44 (66)
283 1bbo_A Human enhancer-binding 32.8 13 0.00044 23.9 0.7 35 14-59 2-40 (57)
284 3a6p_A Exportin-5; exportin-5, 32.4 5.3E+02 0.018 28.3 14.1 172 113-325 60-276 (1204)
285 2cur_A Skeletal muscle LIM-pro 32.2 39 0.0013 23.0 3.3 30 14-43 32-62 (69)
286 1x62_A C-terminal LIM domain p 32.2 47 0.0016 23.4 3.8 43 9-60 11-53 (79)
287 2ctu_A Zinc finger protein 483 31.9 13 0.00044 25.2 0.6 35 12-60 17-51 (73)
288 3g2s_A C-terminal fragment of 31.7 2E+02 0.007 23.2 10.6 72 143-220 49-126 (149)
289 1x6e_A Zinc finger protein 24; 31.1 14 0.00047 25.3 0.7 37 12-59 13-53 (72)
290 2d8x_A Protein pinch; LIM doma 31.0 27 0.00091 24.0 2.2 36 11-46 29-65 (70)
291 2l3k_A Rhombotin-2, linker, LI 30.7 32 0.0011 26.8 2.9 36 11-46 34-71 (123)
292 2lce_A B-cell lymphoma 6 prote 30.1 26 0.00089 23.9 2.1 39 11-60 15-57 (74)
293 1lko_A Rubrerythrin all-iron(I 30.0 15 0.0005 31.5 0.8 21 30-57 160-180 (191)
294 4ayb_P DNA-directed RNA polyme 29.8 6.9 0.00024 25.2 -1.0 26 29-57 7-32 (48)
295 3pst_A Protein DOA1; protein d 29.7 2.6E+02 0.0087 27.0 9.6 105 204-325 275-389 (425)
296 2dj7_A Actin-binding LIM prote 29.7 25 0.00087 25.1 2.0 45 7-60 9-54 (80)
297 1yc5_A NAD-dependent deacetyla 29.5 46 0.0016 29.5 4.1 49 30-79 126-180 (246)
298 4gzn_C ZFP-57, zinc finger pro 29.4 22 0.00075 23.9 1.5 37 13-60 4-44 (60)
299 2cor_A Pinch protein; LIM doma 29.3 20 0.00068 25.6 1.3 40 14-62 16-55 (79)
300 1x64_A Alpha-actinin-2 associa 28.8 27 0.00093 25.3 2.1 43 11-62 23-65 (89)
301 2dar_A PDZ and LIM domain prot 28.4 34 0.0012 24.8 2.6 35 11-45 49-84 (90)
302 2ctd_A Zinc finger protein 512 28.3 38 0.0013 24.9 2.8 12 48-59 62-73 (96)
303 2jny_A Uncharacterized BCR; st 28.3 5.8 0.0002 27.9 -1.7 40 9-65 6-45 (67)
304 2hf1_A Tetraacyldisaccharide-1 28.0 5.3 0.00018 28.2 -1.9 40 10-66 5-44 (68)
305 1joc_A EEA1, early endosomal a 27.6 25 0.00085 27.8 1.7 29 14-42 70-102 (125)
306 2kpi_A Uncharacterized protein 27.5 37 0.0013 22.7 2.3 17 7-23 4-20 (56)
307 1j2o_A FLIN2, fusion of rhombo 27.1 60 0.0021 24.7 3.9 36 11-46 28-66 (114)
308 1x64_A Alpha-actinin-2 associa 26.9 84 0.0029 22.6 4.5 35 11-45 49-84 (89)
309 1wyh_A SLIM 2, skeletal muscle 26.8 46 0.0016 22.7 2.9 39 15-62 7-47 (72)
310 1ma3_A SIR2-AF2, transcription 26.5 58 0.002 29.0 4.2 49 30-79 128-183 (253)
311 2epq_A POZ-, at HOOK-, and zin 25.9 35 0.0012 20.4 1.9 14 13-26 10-23 (45)
312 2gqj_A Zinc finger protein KIA 25.3 27 0.00092 25.6 1.5 41 12-59 23-65 (98)
313 4g9i_A Hydrogenase maturation 25.1 25 0.00087 36.9 1.7 49 10-58 103-188 (772)
314 3vth_A Hydrogenase maturation 24.3 21 0.00073 37.4 1.0 49 10-58 108-193 (761)
315 1ard_A Yeast transcription fac 23.8 29 0.00099 18.0 1.1 12 14-25 3-14 (29)
316 1b8t_A Protein (CRP1); LIM dom 23.6 52 0.0018 27.8 3.2 41 14-57 143-184 (192)
317 2lt7_A Transcriptional regulat 23.5 37 0.0013 26.8 2.1 46 13-58 22-88 (133)
318 1znf_A 31ST zinc finger from X 23.4 27 0.00093 17.8 0.9 12 14-25 2-13 (27)
319 2d8y_A Eplin protein; LIM doma 23.4 1.2E+02 0.004 21.8 4.8 45 9-62 11-56 (91)
320 2cor_A Pinch protein; LIM doma 23.3 91 0.0031 21.9 4.0 33 11-43 39-71 (79)
321 3l3f_X Protein DOA1, DOA1/UFD3 23.2 2.7E+02 0.0092 26.2 8.3 144 149-325 172-326 (362)
322 1elk_A Target of MYB1; superhe 23.0 3E+02 0.01 22.2 10.2 73 144-220 55-130 (157)
323 2m0e_A Zinc finger and BTB dom 22.9 32 0.0011 17.7 1.2 9 15-23 4-12 (29)
324 2kmk_A Zinc finger protein GFI 22.9 29 0.001 23.9 1.2 13 14-26 2-14 (82)
325 1llm_C Chimera of ZIF23-GCN4; 22.7 32 0.0011 24.4 1.4 37 13-60 3-43 (88)
326 1klr_A Zinc finger Y-chromosom 22.6 34 0.0012 17.8 1.2 12 14-25 3-14 (30)
327 1weu_A Inhibitor of growth fam 22.6 82 0.0028 23.3 3.7 48 9-57 32-85 (91)
328 2cot_A Zinc finger protein 435 22.5 53 0.0018 22.4 2.6 39 11-60 16-58 (77)
329 1x5w_A Zinc finger protein 64, 22.5 44 0.0015 22.3 2.1 37 12-59 8-48 (70)
330 1x4k_A Skeletal muscle LIM-pro 22.1 49 0.0017 22.6 2.3 38 15-61 7-46 (72)
331 1wen_A Inhibitor of growth fam 22.0 1.1E+02 0.0038 21.3 4.1 51 6-57 9-65 (71)
332 2fiy_A Protein FDHE homolog; F 22.0 9.9 0.00034 35.3 -1.9 46 11-57 180-231 (309)
333 1x3h_A Leupaxin; paxillin fami 21.9 76 0.0026 22.1 3.3 37 15-60 17-53 (80)
334 2d9h_A Zinc finger protein 692 21.8 36 0.0012 23.3 1.5 41 12-59 6-49 (78)
335 3ttc_A HYPF, transcriptional r 21.7 29 0.00097 35.8 1.2 49 10-58 14-99 (657)
336 2d8y_A Eplin protein; LIM doma 21.5 61 0.0021 23.5 2.8 34 12-45 41-75 (91)
337 1wff_A Riken cDNA 2810002D23 p 21.4 52 0.0018 24.1 2.3 25 14-38 26-52 (85)
338 3vld_A DNA mismatch repair pro 21.3 3.9E+02 0.013 26.3 9.1 86 235-346 118-204 (500)
339 2dlq_A GLI-kruppel family memb 21.3 55 0.0019 24.5 2.6 15 12-26 6-20 (124)
340 2cuq_A Four and A half LIM dom 21.2 73 0.0025 22.2 3.1 37 15-60 17-53 (80)
341 1paa_A Yeast transcription fac 20.9 37 0.0013 17.7 1.2 12 14-25 3-14 (30)
342 1rik_A E6APC1 peptide; E6-bind 20.8 29 0.00098 18.0 0.6 12 14-25 3-14 (29)
343 1p7a_A BF3, BKLF, kruppel-like 20.8 36 0.0012 19.1 1.1 14 13-26 11-24 (37)
344 2dj7_A Actin-binding LIM prote 20.7 86 0.003 22.1 3.4 35 11-45 40-74 (80)
345 2m0f_A Zinc finger and BTB dom 20.5 24 0.00083 18.3 0.3 12 14-25 3-14 (29)
346 2wbt_A B-129; zinc finger; 2.7 20.3 61 0.0021 24.7 2.8 11 14-24 42-52 (129)
347 2m0d_A Zinc finger and BTB dom 20.0 30 0.001 18.0 0.6 12 14-25 4-15 (30)
348 1x4l_A Skeletal muscle LIM-pro 20.0 83 0.0028 21.4 3.1 39 15-62 7-49 (72)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=1.6e-28 Score=239.52 Aligned_cols=244 Identities=16% Similarity=0.203 Sum_probs=206.1
Q ss_pred HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcC--------c--chhhHHHHHHHHHHhcccccchHHHHHHHh
Q 036338 116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNV--------N--DVNMLKQVIRVLDLILNKIEDQQHLMNLIL 185 (408)
Q Consensus 116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~--------~--~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~ 185 (408)
+..|++.|.+++.+ +++|..|++. |++++|+.+|.++ + ...++++|+++|.||+. ++++. +..|.
T Consensus 49 ~~~A~~aL~nls~d-~e~R~~i~~~-G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~--~~~~~-k~~i~ 123 (354)
T 3nmw_A 49 ICPAVCVLMKLSFD-EEHRHAMNEL-GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF--GDVAN-KATLC 123 (354)
T ss_dssp HHHHHHHHHHHHTS-HHHHHHHHHT-THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTS--SCHHH-HHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHc-CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHc--CCHHH-HHHHH
Confidence 66899999999986 8999999999 9999999999642 1 24466999999999997 55443 66563
Q ss_pred ccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC--cchhhHHhhhcChHHHHHHhc-ccCCCHHHHHHHHHHHHHhc
Q 036338 186 KRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD--ADSKVKIAERDGLLAETVKSL-SLDSDRRLIEASLSCLITIS 262 (408)
Q Consensus 186 ~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~--~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~~A~~aL~~Ls 262 (408)
...|+||.|+++|+++ +.++++.|+++|.+|+.. +++|..|.+ .|+||+||++| +++ +.++++.|+++|+||+
T Consensus 124 -~~~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~i~~-~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs 199 (354)
T 3nmw_A 124 -SMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVK-KESTLKSVLSALWNLS 199 (354)
T ss_dssp -HCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCCHHHHHHHHH-TTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred -HcCCcHHHHHHHHCCC-CHHHHHHHHHHHHHHhccCCHHHHHHHHH-CCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 1457799999999999 999999999999999985 568899987 89999999986 454 8899999999999999
Q ss_pred c-CcchHHHHH-hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCC--CcchHHHHHHHHHHHhC----CHHHHHHHH
Q 036338 263 S-SKRAKTKLI-NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNG--TVLITEKALRLVEILST----TKQGRMEIC 334 (408)
Q Consensus 263 ~-~~~n~~~~~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~L~~L~~----~~~~~~~~~ 334 (408)
. .++|+..++ ..|+||+|+.+|.++ +. ...+++.|+++|.||+. +++++..+.
T Consensus 200 ~~~~~nk~~i~~~~Gai~~Lv~lL~~~-------------------~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~ 260 (354)
T 3nmw_A 200 AHCTENKADICAVDGALAFLVGTLTYR-------------------SQTNTLAIIESGGGILRNVSSLIATNEDHRQILR 260 (354)
T ss_dssp TTCHHHHHHHHHSTTHHHHHHHHTTCC-------------------CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccChhhhHHHHHhcCcHHHHHHHhccC-------------------CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 9 668999998 799999999999863 11 12589999999999994 899998887
Q ss_pred hhcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 335 QDAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 335 ~~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
+. |++|.|+++|.. +.++.+++.|+++.|+.+|++. ++.+|+.|..+|+.|..
T Consensus 261 ~~-g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~ 334 (354)
T 3nmw_A 261 EN-NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMA 334 (354)
T ss_dssp TT-THHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHT
T ss_pred Hc-CCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHc
Confidence 74 999999996543 5677889999999999998765 67789999999999887
No 2
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.95 E-value=3.1e-27 Score=237.34 Aligned_cols=244 Identities=16% Similarity=0.184 Sum_probs=204.6
Q ss_pred HHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcC----------cchhhHHHHHHHHHHhcccccchHHHHHHHhc
Q 036338 117 SENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNV----------NDVNMLKQVIRVLDLILNKIEDQQHLMNLILK 186 (408)
Q Consensus 117 ~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~----------~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~ 186 (408)
.+|++.|.+++.+ +++|..|.+. |++++|+.+|... ....++++|+++|.||+. ++++. +..+.
T Consensus 166 ~qAv~aL~nls~~-~e~R~~i~~~-G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~--~~~~~-k~~i~- 239 (458)
T 3nmz_A 166 CPAVCVLMKLSFD-EEHRHAMNEL-GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTF--GDVAN-KATLC- 239 (458)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHT-THHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHT--TCHHH-HHHHH-
T ss_pred HHHHHHHHHhcCC-HHHHHHHHHC-CCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhC--CCccc-HHHHH-
Confidence 4899999999764 9999999999 9999999999631 124466999999999997 55543 55553
Q ss_pred cCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC--cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc-
Q 036338 187 RDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD--ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS- 263 (408)
Q Consensus 187 ~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~- 263 (408)
...|+||+|+++|+++ +.++++.|+++|.+|+.. +++|..|.+ .|+|++||++|....+..+++.|+++|+||+.
T Consensus 240 ~~~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~-~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~ 317 (458)
T 3nmz_A 240 SMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAH 317 (458)
T ss_dssp HCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHH-TTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHH-cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccC
Confidence 1457799999999999 999999999999999984 468899987 89999999975443388999999999999999
Q ss_pred CcchHHHHH-hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCC--CcchHHHHHHHHHHHh----CCHHHHHHHHhh
Q 036338 264 SKRAKTKLI-NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNG--TVLITEKALRLVEILS----TTKQGRMEICQD 336 (408)
Q Consensus 264 ~~~n~~~~~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~L~~L~----~~~~~~~~~~~~ 336 (408)
.++|+..++ .+|+||+|+.+|.++ +. ...+++.|+++|.||+ .+++++..+.+.
T Consensus 318 ~~~nk~~I~~~~Gal~~Lv~LL~~~-------------------~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~ 378 (458)
T 3nmz_A 318 CTENKADICAVDGALAFLVGTLTYR-------------------SQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378 (458)
T ss_dssp CHHHHHHHHHSTTHHHHHHHHTTCC-------------------CSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHhcCcHHHHHHHhcCC-------------------CCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHc
Confidence 778999998 799999999999863 11 1258999999999999 489999888874
Q ss_pred cCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 337 AALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 337 ~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
|++|.|+++|.. +.++.+++.|+++.|+.+|++. ++.+|+.|..+|+.|..
T Consensus 379 -G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~~ 450 (458)
T 3nmz_A 379 -NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMA 450 (458)
T ss_dssp -THHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHT
T ss_pred -ccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHc
Confidence 899999996533 5677788999999999998765 67789999999998887
No 3
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.95 E-value=5.5e-26 Score=229.69 Aligned_cols=264 Identities=15% Similarity=0.148 Sum_probs=210.0
Q ss_pred HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH
Q 036338 101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH 179 (408)
Q Consensus 101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~ 179 (408)
.++.+|+.|++++.+ |..|++.|++++..++.++..+++. |+||.|+.+|++++ ..+++.|+++|.||+. ++++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~-g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~--~~~~~ 78 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQL-GGICKLVDLLRSPN-QNVQQAAAGALRNLVF--RSTTN 78 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHT-THHHHHHHHTTSSC-HHHHHHHHHHHHHHHS--SCHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHc-CCHHHHHHHHcCCC-HHHHHHHHHHHHHHhc--CCHHH
Confidence 378899999999888 9999999999998888889899999 99999999999876 3455999999999997 43343
Q ss_pred HHHHHhccCcccHHHHHHHHh-cCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcc--------cC-----
Q 036338 180 LMNLILKRDQDCLNSLLLVLK-QQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLS--------LD----- 245 (408)
Q Consensus 180 ~~~~i~~~~~g~i~~Lv~lL~-~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~--------~~----- 245 (408)
+..|. +.|+||+|+++|+ ++ +.++++.|+++|.+|+.++++|..+.. |++|+|+++|. ++
T Consensus 79 -k~~i~--~~G~i~~Lv~lL~~~~-~~~~~~~a~~aL~nLa~~~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~~~ 152 (457)
T 1xm9_A 79 -KLETR--RQNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSSTDELKEELIA--DALPVLADRVIIPFSGWCDGNSNMSR 152 (457)
T ss_dssp -HHHHH--HTTCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTSSSTHHHHHH--HHHHHHHHHTTHHHHTCC--------
T ss_pred -HHHHH--HcCCHHHHHHHHhhCC-CHHHHHHHHHHHHHHhcCHHhHHHHHh--ccHHHHHHHHhccccccccCccchhc
Confidence 77777 8999999999999 77 999999999999999999889998875 99999999993 22
Q ss_pred --CCHHHHHHHHHHHHHhccCcchHHHHHhc-CcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHH
Q 036338 246 --SDRRLIEASLSCLITISSSKRAKTKLINH-KLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEI 322 (408)
Q Consensus 246 --~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~-G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~ 322 (408)
.++.+.+.|+++|+|||.+++++..+++. |+|++|+.+|++.. .....+..+++.|+++|.+
T Consensus 153 e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~---------------~~~~~~~~~~e~a~~~L~n 217 (457)
T 1xm9_A 153 EVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCV---------------AASRCDDKSVENCMCVLHN 217 (457)
T ss_dssp -CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHH---------------HHTCTTCTTHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhc---------------cccCCchHHHHHHHHHHHh
Confidence 24567779999999999998899999997 99999999998510 0001356789999999999
Q ss_pred HhCCHHHH--------------------------------------------------HHHHhhcCchHHHHHHHHH---
Q 036338 323 LSTTKQGR--------------------------------------------------MEICQDAALLNGVVQKMLK--- 349 (408)
Q Consensus 323 L~~~~~~~--------------------------------------------------~~~~~~~g~i~~lv~~l~~--- 349 (408)
|+...+.. .+.+-+.++++.|+.+|..
T Consensus 218 Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~ 297 (457)
T 1xm9_A 218 LSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKK 297 (457)
T ss_dssp HTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCC
T ss_pred cccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCC
Confidence 97422100 0111224667778876543
Q ss_pred -----------------------HHHHHHH-hcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhhc
Q 036338 350 -----------------------TAQEAVS-SSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVN 390 (408)
Q Consensus 350 -----------------------~~~~~~~-~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~ 390 (408)
...+.++ +.|+++.|+.+|+++ ++.+|+.|..+|+.++.+
T Consensus 298 ~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 298 DATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcC
Confidence 0112333 689999999999776 577888898999988773
No 4
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.94 E-value=5.2e-26 Score=229.90 Aligned_cols=259 Identities=15% Similarity=0.146 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhh-cCcchhhHHHHHHHHHHhcccccc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILS-NVNDVNMLKQVIRVLDLILNKIED 176 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~-s~~~~~~~e~A~~~L~~L~~~~~~ 176 (408)
.+.|+.|++.|++++++ +..|+++|++++.+++++|..|++. |+||.|+.+|. +++ .++++.|+++|.||+. ++
T Consensus 43 ~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~-G~i~~Lv~lL~~~~~-~~~~~~a~~aL~nLa~--~~ 118 (457)
T 1xm9_A 43 LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQ-NGIREAVSLLRRTGN-AEIQKQLTGLLWNLSS--TD 118 (457)
T ss_dssp TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHT-TCHHHHHHHHTTCCC-HHHHHHHHHHHHHHHT--SS
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHHhhCCC-HHHHHHHHHHHHHHhc--CH
Confidence 46789999999998888 9999999999999889999999999 99999999998 544 4456999999999997 54
Q ss_pred hHHHHHHHhccCcccHHHHHHHHh--------cC-------CChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHh
Q 036338 177 QQHLMNLILKRDQDCLNSLLLVLK--------QQ-------ESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKS 241 (408)
Q Consensus 177 ~~~~~~~i~~~~~g~i~~Lv~lL~--------~~-------~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~l 241 (408)
+. +..|. + |++++|+++|. ++ .+.+++.+|+++|.||+.+++++..+.+..|++++|+.+
T Consensus 119 ~~--~~~i~--~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~l 193 (457)
T 1xm9_A 119 EL--KEELI--A-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAY 193 (457)
T ss_dssp ST--HHHHH--H-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHH
T ss_pred Hh--HHHHH--h-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHH
Confidence 44 67776 7 99999999993 22 134455599999999999988888888723999999988
Q ss_pred cccC----------------------------------------------------------------------------
Q 036338 242 LSLD---------------------------------------------------------------------------- 245 (408)
Q Consensus 242 L~~~---------------------------------------------------------------------------- 245 (408)
|+++
T Consensus 194 L~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (457)
T 1xm9_A 194 VQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNP 273 (457)
T ss_dssp HHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSC
T ss_pred HHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCc
Confidence 8630
Q ss_pred ----------------------CCHHHHHHHHHHHHHhccCcch-----HHHHH-hcCcHHHHHHHhccCCCCCCCCCCC
Q 036338 246 ----------------------SDRRLIEASLSCLITISSSKRA-----KTKLI-NHKLITELGKLITDGHNGNGSGNGN 297 (408)
Q Consensus 246 ----------------------~~~~~~~~A~~aL~~Ls~~~~n-----~~~~~-~~G~i~~Lv~lL~~~~~~~~~~~~~ 297 (408)
.++..+++|++||+||+.+... .+.++ ++|++|.|+++|.++
T Consensus 274 ~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~---------- 343 (457)
T 1xm9_A 274 KGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG---------- 343 (457)
T ss_dssp CGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS----------
T ss_pred hHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC----------
Confidence 1356777889999999975432 12344 699999999999864
Q ss_pred CCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHH---------------------------H
Q 036338 298 GNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLK---------------------------T 350 (408)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~---------------------------~ 350 (408)
+..++..|+++|.||+.+++++..+.. |++|.|+++|.. +
T Consensus 344 -----------~~~v~~~A~~aL~nls~~~~~~~~i~~--~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~ 410 (457)
T 1xm9_A 344 -----------NSDVVRSGASLLSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQ 410 (457)
T ss_dssp -----------CHHHHHHHHHHHHHHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTH
T ss_pred -----------CHhHHHHHHHHHHHHhcCHHHHHHHHH--hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHH
Confidence 789999999999999999888877754 689999986543 3
Q ss_pred HHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 351 AQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 351 ~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
..+.+.+.|++++|..++.++.++.++++|..+|..+-.
T Consensus 411 ~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 411 LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence 345566789999999988776578899999888875544
No 5
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.94 E-value=2e-25 Score=229.39 Aligned_cols=268 Identities=17% Similarity=0.173 Sum_probs=210.2
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc-
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED- 176 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~- 176 (408)
...|+.||+.|.+++.+ |..|++.|.+++..++.+|..|++. |+||.||.+|++++ ..+++.|+++|.||+. ++
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~-G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~--~~~ 122 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKL-KGIPVLVGLLDHPK-KEVHLGACGALKNISF--GRD 122 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHGGGCSS-HHHHHHHHHHHHHHTS--SSC
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHc-CCcHHHHHHHCCCC-HHHHHHHHHHHHHHHc--cCC
Confidence 45689999999999888 9999999999999899999999999 99999999999887 3445999999999996 42
Q ss_pred hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcc-------------
Q 036338 177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLS------------- 243 (408)
Q Consensus 177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~------------- 243 (408)
++. +..|. +.|+|++|+++|+++.+.+++++|+.+|++|+.++++|..|+. +++++|+++|.
T Consensus 123 ~~n-k~~I~--~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~--~alp~Lv~LL~~p~sg~~~~~~~~ 197 (584)
T 3l6x_A 123 QDN-KIAIK--NCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD--HALHALTDEVIIPHSGWEREPNED 197 (584)
T ss_dssp HHH-HHHHH--HTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH--HTHHHHHHHTHHHHHCCC------
T ss_pred HHH-HHHHH--HcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh--ccHHHHHHHHhccccccccccccc
Confidence 333 77787 8999999999999842788999999999999999999999985 46999999872
Q ss_pred ----cCCCHHHHHHHHHHHHHhccCcc-hHHHHHh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Q 036338 244 ----LDSDRRLIEASLSCLITISSSKR-AKTKLIN-HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKAL 317 (408)
Q Consensus 244 ----~~~~~~~~~~A~~aL~~Ls~~~~-n~~~~~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 317 (408)
+..+..+++.|+++|+||+...+ +|..|++ .|+|++||.+|++.. .....+...++.|+
T Consensus 198 ~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~---------------~~~~~~~~~~enav 262 (584)
T 3l6x_A 198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEI---------------GQKDSDSKLVENCV 262 (584)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHH---------------HTTCCSCHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhh---------------cccCccHHHHHHHH
Confidence 11257999999999999999875 5899987 577789999997510 00023678999999
Q ss_pred HHHHHHhCCHHHHH-------H---------HHhhc---------CchHHHHHHHHH-----------------------
Q 036338 318 RLVEILSTTKQGRM-------E---------ICQDA---------ALLNGVVQKMLK----------------------- 349 (408)
Q Consensus 318 ~~L~~L~~~~~~~~-------~---------~~~~~---------g~i~~lv~~l~~----------------------- 349 (408)
++|.||+..-+... . ..... ++++.|+.+|..
T Consensus 263 ~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~ 342 (584)
T 3l6x_A 263 CLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWT 342 (584)
T ss_dssp HHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSH
T ss_pred HHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcc
Confidence 99999997632111 0 01112 334556765532
Q ss_pred ---HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhhcC
Q 036338 350 ---TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRVNY 391 (408)
Q Consensus 350 ---~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~ 391 (408)
..+..+.+.|+++.|+.+|.+. ++.+++.|..+|+.|+.+.
T Consensus 343 ~~~~~~~~v~~~~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~~~ 386 (584)
T 3l6x_A 343 YGRYIRSALRQEKALSAIADLLTNE-HERVVKAASGALRNLAVDA 386 (584)
T ss_dssp HHHHHHHHHTSHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCh
Confidence 1122334579999999999766 5678999999999998743
No 6
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.94 E-value=2e-25 Score=224.26 Aligned_cols=261 Identities=14% Similarity=0.118 Sum_probs=213.3
Q ss_pred HHHHHHHHHHHhcCC------------hh-HHHHHHHHHHHhhhChhhhhhhhhcCChH----------HHHHHHhhcCc
Q 036338 99 QDEVKDIIRVAISKN------------ED-FSENLTKIVAFAKESDENKTFLAKFDGLV----------VMLVEILSNVN 155 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~------------~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i----------~~Lv~lL~s~~ 155 (408)
.+.++.||+.|+..+ ++ +.+|+++|.+++.+.++.....++. |++ +.+++++.+..
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~ 147 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREI-RVLHLLEQIRAYCETCWEWQEAHE 147 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHH-HHHHHHHHhhhhhHHHHHHHHhhc
Confidence 456889999999743 46 9999999999999988888888888 888 77778887652
Q ss_pred ---c-----hh-----hHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhc-----------CCChHHHHHH
Q 036338 156 ---D-----VN-----MLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQ-----------QESVDSRIES 211 (408)
Q Consensus 156 ---~-----~~-----~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~-----------~~~~~~~~~A 211 (408)
+ .+ .+..|+++|.|++. +++. |..|. +.|++++|+.+|.. . +.+.+.+|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~qAv~aL~nls~---~~e~-R~~i~--~~G~l~~Lv~LL~~~~~~~~~~~~~~-~~~l~~~A 220 (458)
T 3nmz_A 148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSF---DEEH-RHAMN--ELGGLQAIAELLQVDCEMYGLTNDHY-SITLRRYA 220 (458)
T ss_dssp SSSCCCSCC--CCCTTTTHHHHHHHHHHTT---SHHH-HHHHH--HTTHHHHHHHHHHHHHHHSTTCCCHH-HHHHHHHH
T ss_pred cccccccCCccchhhHHHHHHHHHHHHhcC---CHHH-HHHHH--HCCCHHHHHHHHhhhhcccccccCCC-CHHHHHHH
Confidence 2 11 12389999999985 4333 88887 89999999999952 2 46789999
Q ss_pred HHHHHHhhcCcc-hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccC--cchHHHHHhcCcHHHHHHHhccCC
Q 036338 212 LRLLEFIAGDAD-SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSS--KRAKTKLINHKLITELGKLITDGH 288 (408)
Q Consensus 212 a~~L~~La~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~--~~n~~~~~~~G~i~~Lv~lL~~~~ 288 (408)
+++|.+|+.+++ ++..+....|+||+||++|+++ ++++++.|++||+||+.. ++||..++++|+||+|+++|.+
T Consensus 221 a~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~-- 297 (458)
T 3nmz_A 221 GMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE-- 297 (458)
T ss_dssp HHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTT--
T ss_pred HHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhc--
Confidence 999999998775 6777754367799999999987 899999999999999985 4689999999999999998643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHHhhcCchHHHHHHHHH------------------
Q 036338 289 NGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQGRMEICQDAALLNGVVQKMLK------------------ 349 (408)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~~g~i~~lv~~l~~------------------ 349 (408)
+.+..+++.|+.+|.||+. +++++.+++...|++|.|+++|..
T Consensus 298 ------------------s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~ 359 (458)
T 3nmz_A 298 ------------------VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 359 (458)
T ss_dssp ------------------CCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHH
T ss_pred ------------------CCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 2377899999999999998 889999998667999999986531
Q ss_pred ----------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 350 ----------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 350 ----------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
+.++.+++.|+++.|+.+|+++ +..+++.|..+|..|..
T Consensus 360 nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 360 NVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHHHHHHHS
T ss_pred HHHhcccCCHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHHHHHHHc
Confidence 2455678899999999999865 56688888888888874
No 7
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.93 E-value=4.2e-25 Score=226.93 Aligned_cols=260 Identities=14% Similarity=0.182 Sum_probs=209.0
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhh-ChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKE-SDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED 176 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~-~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~ 176 (408)
.+.|+.||++|++++.+ |..|+++|++++.. ++++|..|++. |+||.|+.+|++..+..+++.|+.+|++|+. .+
T Consensus 89 ~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~-GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~--~~ 165 (584)
T 3l6x_A 89 LKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNC-DGVPALVRLLRKARDMDLTEVITGTLWNLSS--HD 165 (584)
T ss_dssp TTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHT-THHHHHHHHHHHCCSHHHHHHHHHHHHHHTT--SG
T ss_pred cCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHc-CCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC--Cc
Confidence 46789999999999988 99999999999985 78999999999 9999999999985434456999999999997 56
Q ss_pred hHHHHHHHhccCcccHHHHHHHHh-----------------cCCChHHHHHHHHHHHHhhcCcc-hhhHHhhhcChHHHH
Q 036338 177 QQHLMNLILKRDQDCLNSLLLVLK-----------------QQESVDSRIESLRLLEFIAGDAD-SKVKIAERDGLLAET 238 (408)
Q Consensus 177 ~~~~~~~i~~~~~g~i~~Lv~lL~-----------------~~~~~~~~~~Aa~~L~~La~~~~-~~~~i~~~~g~i~~L 238 (408)
++ +..|. + ++|++|+++|. +..+.+++++|+++|.||+.+.+ +|..|.+..|++++|
T Consensus 166 ~~--k~~I~--~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~L 240 (584)
T 3l6x_A 166 SI--KMEIV--D-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDAL 240 (584)
T ss_dssp GG--HHHHH--H-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHH
T ss_pred hh--hHHHH--h-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHH
Confidence 55 66675 4 57999999872 11146899999999999998764 588887656777777
Q ss_pred HHhccc-------------------------------------------------------------------------C
Q 036338 239 VKSLSL-------------------------------------------------------------------------D 245 (408)
Q Consensus 239 v~lL~~-------------------------------------------------------------------------~ 245 (408)
|.+|++ .
T Consensus 241 V~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s 320 (584)
T 3l6x_A 241 IFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKES 320 (584)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccC
Confidence 776642 1
Q ss_pred CCHHHHHHHHHHHHHhccCc-----chHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHH
Q 036338 246 SDRRLIEASLSCLITISSSK-----RAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLV 320 (408)
Q Consensus 246 ~~~~~~~~A~~aL~~Ls~~~-----~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L 320 (408)
.++.++++|++||+|||.+. .++..+.+.|++|.|+.||.++ +..+++.|+++|
T Consensus 321 ~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~---------------------~~~v~~~A~~aL 379 (584)
T 3l6x_A 321 KTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE---------------------HERVVKAASGAL 379 (584)
T ss_dssp CCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS---------------------CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC---------------------CHHHHHHHHHHH
Confidence 23566778888888887653 2344445689999999999864 789999999999
Q ss_pred HHHhCCHHHHHHHHhhcCchHHHHHHHHH-----------------------------HHHHHHHhcCcHHHHHHHHhhc
Q 036338 321 EILSTTKQGRMEICQDAALLNGVVQKMLK-----------------------------TAQEAVSSSNVLTKILLLMQSN 371 (408)
Q Consensus 321 ~~L~~~~~~~~~~~~~~g~i~~lv~~l~~-----------------------------~~~~~~~~~g~~~~Ll~ll~~~ 371 (408)
.||+.++.++..| . .|++|.||++|.. +.++.++++|++++|+.++++.
T Consensus 380 ~nLs~~~~~~~~I-~-~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~ 457 (584)
T 3l6x_A 380 RNLAVDARNKELI-G-KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSG 457 (584)
T ss_dssp HHHHTTCSCHHHH-H-HHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCS
T ss_pred HHHhCChhHHHHH-H-hCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC
Confidence 9999998899877 4 3889999975431 5667788999999999999875
Q ss_pred -CCHHHHHHHHHHHHHHhh
Q 036338 372 -CTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 372 -~~~~~k~~A~~lL~~l~~ 389 (408)
..+..++.|..+|..+..
T Consensus 458 ~~~~~v~k~Aa~vL~nl~~ 476 (584)
T 3l6x_A 458 NRSEKEVRAAALVLQTIWG 476 (584)
T ss_dssp SSCHHHHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHHc
Confidence 478889999999998765
No 8
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.93 E-value=2.1e-25 Score=217.53 Aligned_cols=221 Identities=15% Similarity=0.130 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHhcC-----------Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHH
Q 036338 99 QDEVKDIIRVAISK-----------NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRV 166 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~-----------~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~ 166 (408)
.+.++.|+..|.+. +.+ |..|++.|.+++.+++.+|..|....|+||.|+.+|++++ ..+++.|+++
T Consensus 72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~-~~v~~~A~~a 150 (354)
T 3nmw_A 72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES-EDLQQVIASV 150 (354)
T ss_dssp TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSC-HHHHHHHHHH
T ss_pred cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCC-HHHHHHHHHH
Confidence 45678888888531 234 8899999999999888899988655266999999999876 3345999999
Q ss_pred HHHhcccccchHHHHHHHhccCcccHHHHHHHH-hcCCChHHHHHHHHHHHHhhc-CcchhhHHhhhcChHHHHHHhccc
Q 036338 167 LDLILNKIEDQQHLMNLILKRDQDCLNSLLLVL-KQQESVDSRIESLRLLEFIAG-DADSKVKIAERDGLLAETVKSLSL 244 (408)
Q Consensus 167 L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL-~~~~~~~~~~~Aa~~L~~La~-~~~~~~~i~~~~g~i~~Lv~lL~~ 244 (408)
|.||+. .+++..|..|. +.|+|++|+++| +++ +.++++.|+.+|++|+. .+++|..|+...|++++|+++|++
T Consensus 151 L~nLs~--~~~~~~k~~i~--~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~ 225 (354)
T 3nmw_A 151 LRNLSW--RADVNSKKTLR--EVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY 225 (354)
T ss_dssp HHHHHT--TCCHHHHHHHH--HTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred HHHHhc--cCCHHHHHHHH--HCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhcc
Confidence 999986 42222277777 899999999975 556 89999999999999998 668899998448999999999987
Q ss_pred CCCH---HHHHHHHHHHHHhcc----CcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Q 036338 245 DSDR---RLIEASLSCLITISS----SKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKAL 317 (408)
Q Consensus 245 ~~~~---~~~~~A~~aL~~Ls~----~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 317 (408)
+.+. ++++.|+++|+||+. +++++..++++|+||+|+++|.++ +..+++.|+
T Consensus 226 ~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~---------------------~~~v~~~A~ 284 (354)
T 3nmw_A 226 RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH---------------------SLTIVSNAC 284 (354)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS---------------------CHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC---------------------ChHHHHHHH
Confidence 6332 589999999999996 778999999999999999999864 778999999
Q ss_pred HHHHHHh-CCHHHHHHHHhhcCchHHHHHHH
Q 036338 318 RLVEILS-TTKQGRMEICQDAALLNGVVQKM 347 (408)
Q Consensus 318 ~~L~~L~-~~~~~~~~~~~~~g~i~~lv~~l 347 (408)
++|.||+ .+++++..+++. |+||.|+++|
T Consensus 285 ~aL~nLa~~~~~~~~~i~~~-G~i~~Lv~LL 314 (354)
T 3nmw_A 285 GTLWNLSARNPKDQEALWDM-GAVSMLKNLI 314 (354)
T ss_dssp HHHHHHTSSCHHHHHHHHHT-THHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHC-CCHHHHHHHH
Confidence 9999999 579999988875 9999999954
No 9
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.93 E-value=3.8e-24 Score=226.76 Aligned_cols=260 Identities=13% Similarity=0.150 Sum_probs=214.0
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhCh-----------------------------hhh---hhhhhcCChHH
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESD-----------------------------ENK---TFLAKFDGLVV 145 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~-----------------------------~~r---~~i~~~~G~i~ 145 (408)
.+.++.||+.|++.+.. +..|++.|.+++.+.+ .++ +.+++. |+||
T Consensus 420 ~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vvea-GaVp 498 (810)
T 3now_A 420 KASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANE-GITT 498 (810)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHT-THHH
T ss_pred cchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHC-cCHH
Confidence 67899999999998877 9999999999997542 233 678899 9999
Q ss_pred HHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchh
Q 036338 146 MLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSK 225 (408)
Q Consensus 146 ~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~ 225 (408)
.|+.+|++++ ..+++.|+++|.||+. +.+. +..+. ++|++++|+.+|+++ +...|+.|+++|.+|+.+.+..
T Consensus 499 ~LV~LL~s~s-~~vqe~Aa~aL~NLA~---d~~~-r~~Vv--~~Gaip~Lv~LL~s~-~~~~k~~Aa~AL~nL~~~~~p~ 570 (810)
T 3now_A 499 ALCALAKTES-HNSQELIARVLNAVCG---LKEL-RGKVV--QEGGVKALLRMALEG-TEKGKRHATQALARIGITINPE 570 (810)
T ss_dssp HHHHHHTCCC-HHHHHHHHHHHHHHHT---SHHH-HHHHH--HTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHcCCC-HHHHHHHHHHHHHHcC---CHHH-HHHHH--HCCCHHHHHHHHccC-CHHHHHHHHHHHHHHhcCCChh
Confidence 9999999877 3445999999999996 3333 77777 899999999999999 9999999999999999765544
Q ss_pred hHHh--hhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCc-chHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCC
Q 036338 226 VKIA--ERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSK-RAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNG 302 (408)
Q Consensus 226 ~~i~--~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~-~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~ 302 (408)
..+. ...|++|+|+.+|.++.+...+..|++||.||+..+ +++..++++|++|.|+.+|.++
T Consensus 571 ~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~--------------- 635 (810)
T 3now_A 571 VSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED--------------- 635 (810)
T ss_dssp HHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC---------------
T ss_pred hhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC---------------
Confidence 3332 124689999999986535455678999999999974 6899999999999999999864
Q ss_pred CCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHH---------------------HHHHHHHh-cCc
Q 036338 303 NGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLK---------------------TAQEAVSS-SNV 360 (408)
Q Consensus 303 ~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~---------------------~~~~~~~~-~g~ 360 (408)
+..+++.|+++|.||+.+++.+.+++...|+++.|+.++.. ...+.+++ .|+
T Consensus 636 ------~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~ 709 (810)
T 3now_A 636 ------HLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASW 709 (810)
T ss_dssp ------CTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTH
T ss_pred ------CHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 78899999999999999999999998545899999985432 34566777 899
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 361 LTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 361 ~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
++.|+.+|+++ +..+|+.|.++|..+..
T Consensus 710 I~~Lv~LL~s~-d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 710 LDILHTLIANP-SPAVQHRGIVIILNMIN 737 (810)
T ss_dssp HHHHHHHHTCS-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCC-CHHHHHHHHHHHHHHHh
Confidence 99999999865 56678777777776654
No 10
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.93 E-value=1.4e-24 Score=229.99 Aligned_cols=260 Identities=15% Similarity=0.086 Sum_probs=220.1
Q ss_pred HHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH
Q 036338 100 DEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ 178 (408)
Q Consensus 100 ~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~ 178 (408)
+.++.|++.+++++++ |.+|++.|.+++. ++++|..+++. |++|+|+.+|.+++ ...++.|+++|.+|+. +.++
T Consensus 495 GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~-Gaip~Lv~LL~s~~-~~~k~~Aa~AL~nL~~--~~~p 569 (810)
T 3now_A 495 GITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQE-GGVKALLRMALEGT-EKGKRHATQALARIGI--TINP 569 (810)
T ss_dssp THHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHT-THHHHHHHHHHSSC-HHHHHHHHHHHHHHHH--HSCH
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHC-CCHHHHHHHHccCC-HHHHHHHHHHHHHHhc--CCCh
Confidence 5688999999999888 9999999999996 57899999999 99999999999877 3345999999999986 3333
Q ss_pred HHHHHHhc-cCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338 179 HLMNLILK-RDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS 256 (408)
Q Consensus 179 ~~~~~i~~-~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~ 256 (408)
...+.. ...|++++|+.+|.++.+...+..|+++|.||+..+ +++..|.+ .|+++.|+.+|.++ ++.++++|++
T Consensus 570 --~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~-aG~l~~Lv~LL~s~-~~~Vq~~A~~ 645 (810)
T 3now_A 570 --EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK-EQGVSKIEYYLMED-HLYLTRAAAQ 645 (810)
T ss_dssp --HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHSC-CTTHHHHHHH
T ss_pred --hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHcCC-CHHHHHHHHH
Confidence 222210 024799999999986524455678999999999875 67888887 89999999999987 8899999999
Q ss_pred HHHHhccCcchHHHHHh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHH
Q 036338 257 CLITISSSKRAKTKLIN-HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQGRMEIC 334 (408)
Q Consensus 257 aL~~Ls~~~~n~~~~~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~ 334 (408)
+|.||+.+++.+..+++ .|+++.|+.+++++ +..+++.|+++|.+|+. +++..+.++
T Consensus 646 ~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~---------------------d~~vq~~Aa~ALanLt~~s~~~~~~ii 704 (810)
T 3now_A 646 CLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE---------------------DEETATACAGALAIITSVSVKCCEKIL 704 (810)
T ss_dssp HHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS---------------------SHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHhCChHHHHHHHhccCcHHHHHHHhcCC---------------------CHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999995 89999999999864 78999999999999998 788888888
Q ss_pred hhcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhc--CCHHHHHHHHHHHHHHhh
Q 036338 335 QDAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSN--CTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 335 ~~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~--~~~~~k~~A~~lL~~l~~ 389 (408)
...|++|.|+++|.. +..+.++++|++++|..+++.. ....+.++|.++|+.+-+
T Consensus 705 ~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 705 AIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp TSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 756999999996533 5677889999999999998654 468899999999998876
No 11
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.92 E-value=2.2e-24 Score=197.38 Aligned_cols=200 Identities=17% Similarity=0.172 Sum_probs=170.3
Q ss_pred HHHHHHHHHhcCCh--h-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 101 EVKDIIRVAISKNE--D-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 101 ~i~~Lv~~L~s~~~--~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
.++.+|+.|++++. + +..|++.|.+++.+++.+|..|++. |+||+||.+|++++ ..+++.|+++|.||+. .++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~-G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~--~~~ 84 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQL-RGILKLLQLLKVQN-EDVQRAVCGALRNLVF--EDN 84 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHT-THHHHHHHGGGCCC-HHHHHHHHHHHHHHHT--TCH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHc-CCHHHHHHHHcCCC-HHHHHHHHHHHHHHHh--CCH
Confidence 47889999999987 6 7889999999999999999999999 99999999999876 3345999999999996 434
Q ss_pred HHHHHHHhccCcccHHHHHHHHhc-CCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcc---cC--------
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLKQ-QESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLS---LD-------- 245 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~~-~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~---~~-------- 245 (408)
+. +..|. ++|+||+|+++|++ + +.+++++|+.+|++|+..+++|..|.. +++++|+.++. .+
T Consensus 85 ~n-k~~I~--~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS~~~~~k~~i~~--~~i~~Lv~ll~~p~sG~~~~~~~~ 158 (233)
T 3tt9_A 85 DN-KLEVA--ELNGVPRLLQVLKQTR-DLETKKQITGLLWNLSSNDKLKNLMIT--EALLTLTENIIIPFSGWPEGDYPK 158 (233)
T ss_dssp HH-HHHHH--HTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSGGGHHHHHH--HHHHHHCCCCCHHHHCCCGGGCCC
T ss_pred HH-HHHHH--HcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcChhhHHHHHh--ccHHHHHHHHhccccCCccccccc
Confidence 43 77787 89999999999984 6 899999999999999999999999986 46999999773 11
Q ss_pred ----CCHHHHHHHHHHHHHhccCc-chHHHHHh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHH
Q 036338 246 ----SDRRLIEASLSCLITISSSK-RAKTKLIN-HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRL 319 (408)
Q Consensus 246 ----~~~~~~~~A~~aL~~Ls~~~-~n~~~~~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 319 (408)
.++++++.|+++|+||+..+ ++|+.|.+ .|+|+.|+.++++... ....+...+|.|+.+
T Consensus 159 ~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~---------------~~~~~~k~~En~v~~ 223 (233)
T 3tt9_A 159 ANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIA---------------DYQPDDKATENCVCI 223 (233)
T ss_dssp CCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHH---------------TTCTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhh---------------cccchhHHHHHHHHH
Confidence 26699999999999999854 89999997 5789999999986200 013467899999999
Q ss_pred HHHHhC
Q 036338 320 VEILST 325 (408)
Q Consensus 320 L~~L~~ 325 (408)
|.||+.
T Consensus 224 L~nLs~ 229 (233)
T 3tt9_A 224 LHNLSY 229 (233)
T ss_dssp HHHHCC
T ss_pred HHHHHh
Confidence 999985
No 12
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.92 E-value=2.6e-24 Score=220.41 Aligned_cols=259 Identities=13% Similarity=0.165 Sum_probs=212.3
Q ss_pred HHHHHHHHHhcCChh-HHHHHHHHHHHhh-hChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH
Q 036338 101 EVKDIIRVAISKNED-FSENLTKIVAFAK-ESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ 178 (408)
Q Consensus 101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~-~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~ 178 (408)
.++.+|+.+.+++.+ |..|+..++.+.+ +...-.+.|++. |+||.||.+|++.+...++.+|+++|.||+. ++++
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~-G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias--~~~e 134 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRA-GLIPKFVSFLGKTDCSPIQFESAWALTNIAS--GTSE 134 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHT-THHHHHHHHTTCTTCHHHHHHHHHHHHHHHT--SCHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHC-CCHHHHHHHHCCCCCHHHHHHHHHHHHHHhc--CCHH
Confidence 488999999999998 9999999998754 333346788899 9999999999876644556999999999987 5665
Q ss_pred HHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCC----CHHHHHH
Q 036338 179 HLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDS----DRRLIEA 253 (408)
Q Consensus 179 ~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~----~~~~~~~ 253 (408)
. ++.|+ +.|+||.|+.+|+++ +.++|+.|+++|.+|+.+. +.+..+.. .|++++|+.+|.... ....++.
T Consensus 135 ~-~~~vv--~~GaIp~Lv~lL~s~-~~~v~e~A~~aL~nLa~d~~~~r~~v~~-~G~i~~Ll~lL~~~~~~~~~~~~~~~ 209 (510)
T 3ul1_B 135 Q-TKAVV--DGGAIPAFISLLASP-HAHISEQAVWALGNIAGDGSAFRDLVIK-HGAIDPLLALLAVPDLSTLACGYLRN 209 (510)
T ss_dssp H-HHHHH--HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTCSSCGGGSCHHHHHH
T ss_pred H-HHHHH--HCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHHHHhccchhhhHHHHHH
Confidence 5 56666 899999999999999 9999999999999999875 56667766 899999999998641 2457889
Q ss_pred HHHHHHHhccCcchHHHHH-hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHH
Q 036338 254 SLSCLITISSSKRAKTKLI-NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRME 332 (408)
Q Consensus 254 A~~aL~~Ls~~~~n~~~~~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 332 (408)
++++|.+++.+..+...+. ..|++|.|+.+|.++ +..++..|+++|.+|+..+.++..
T Consensus 210 a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~---------------------~~~v~~~A~~aL~~L~~~~~~~~~ 268 (510)
T 3ul1_B 210 LTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN---------------------DPEVLADSCWAISYLTDGPNERIE 268 (510)
T ss_dssp HHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS---------------------CHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC---------------------CHHHHHHHHHHHHHHhhchhhhHH
Confidence 9999999999876555544 578999999999864 789999999999999987666666
Q ss_pred HHhhcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 333 ICQDAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 333 ~~~~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
++...|+++.|+++|.. ...+.+++.|+++.|+.+|.+. .+.+|+.|..+|..|..
T Consensus 269 ~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a 345 (510)
T 3ul1_B 269 MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITA 345 (510)
T ss_dssp HHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTT
T ss_pred HHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHc
Confidence 66567999999996533 3556678899999999888754 56788888888888776
No 13
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.92 E-value=8e-24 Score=216.75 Aligned_cols=259 Identities=12% Similarity=0.182 Sum_probs=213.2
Q ss_pred HHHHHHHHHHHhcCC-hh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338 99 QDEVKDIIRVAISKN-ED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED 176 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~-~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~ 176 (408)
.+.|+.||+.|+..+ ++ |.+|+++|.+++.++++++..+++. |+||.|+.+|++++ ..+++.|+++|.||+. +.
T Consensus 99 ~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~-GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~--d~ 174 (510)
T 3ul1_B 99 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG-GAIPAFISLLASPH-AHISEQAVWALGNIAG--DG 174 (510)
T ss_dssp TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSC-HHHHHHHHHHHHHHHT--TC
T ss_pred CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC-CCHHHHHHHHcCCC-HHHHHHHHHHHHHHHh--CC
Confidence 467899999998654 56 9999999999999999999999999 99999999999887 3345999999999996 33
Q ss_pred hHHHHHHHhccCcccHHHHHHHHhcCCC-----hHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHH
Q 036338 177 QQHLMNLILKRDQDCLNSLLLVLKQQES-----VDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLI 251 (408)
Q Consensus 177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~-----~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 251 (408)
++ .+..+. +.|++++|+.+|.+. + ...+..++++|.+++.+......+....|++|.|+++|+++ +.+++
T Consensus 175 ~~-~r~~v~--~~G~i~~Ll~lL~~~-~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~ 249 (510)
T 3ul1_B 175 SA-FRDLVI--KHGAIDPLLALLAVP-DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVL 249 (510)
T ss_dssp HH-HHHHHH--HTTCHHHHHHHTCSS-CGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS-CHHHH
T ss_pred HH-HHHHHH--HcCChHHHHHHHHhc-cchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC-CHHHH
Confidence 34 377777 899999999999865 4 34678899999999998766555554478999999999997 89999
Q ss_pred HHHHHHHHHhccCcchHHHH-HhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHH
Q 036338 252 EASLSCLITISSSKRAKTKL-INHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQG 329 (408)
Q Consensus 252 ~~A~~aL~~Ls~~~~n~~~~-~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~ 329 (408)
..|+++|++|+.+..++..+ ++.|+++.|+.+|.++ +..++..|+.+|.+|+. +++.
T Consensus 250 ~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~---------------------~~~v~~~al~aL~nl~~~~~~~ 308 (510)
T 3ul1_B 250 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT---------------------ELPIVTPALRAIGNIVTGTDEQ 308 (510)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS---------------------CHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC---------------------ChhhhhHHHHHHHHhhcCCHHH
Confidence 99999999999987766554 5899999999999864 78999999999999986 4566
Q ss_pred HHHHHhhcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036338 330 RMEICQDAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFR 388 (408)
Q Consensus 330 ~~~~~~~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~ 388 (408)
+..+.. .|+++.|+.+|.. +.++.+++.|+++.|+.+|++. +..+|+.|..+|..+.
T Consensus 309 ~~~i~~-~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~ 386 (510)
T 3ul1_B 309 TQKVID-AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYT 386 (510)
T ss_dssp HHHHHH-TTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHH
T ss_pred HHHHhh-ccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHH
Confidence 666665 5899988875432 4566778899999999999866 4667777777777665
Q ss_pred h
Q 036338 389 V 389 (408)
Q Consensus 389 ~ 389 (408)
.
T Consensus 387 ~ 387 (510)
T 3ul1_B 387 S 387 (510)
T ss_dssp H
T ss_pred c
Confidence 4
No 14
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.92 E-value=3e-23 Score=213.36 Aligned_cols=259 Identities=12% Similarity=0.175 Sum_probs=213.6
Q ss_pred HHHHHHHHHHHhcCC-hh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338 99 QDEVKDIIRVAISKN-ED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED 176 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~-~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~ 176 (408)
.+.|+.||+.|+.++ ++ +..|++.|.+++..++.++..+++. |+||.|+.+|.+++ ..+++.|+++|+||+. ++
T Consensus 118 ~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~-Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~--~~ 193 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG-GAIPAFISLLASPH-AHISEQAVWALGNIAG--AG 193 (529)
T ss_dssp TTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSC-HHHHHHHHHHHHHHHT--TC
T ss_pred CCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHcCCC-HHHHHHHHHHHHHHhc--cC
Confidence 567899999997654 56 8999999999999999999999999 99999999999987 3344999999999996 33
Q ss_pred hHHHHHHHhccCcccHHHHHHHHhcCCC-----hHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHH
Q 036338 177 QQHLMNLILKRDQDCLNSLLLVLKQQES-----VDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLI 251 (408)
Q Consensus 177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~-----~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 251 (408)
.+ .+..+. +.|++++|+.+|... + ...+..++++|.+++.+.+....+....|++|.|+++|.++ +++++
T Consensus 194 ~~-~r~~i~--~~g~i~~Ll~lL~~~-~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v~ 268 (529)
T 3tpo_A 194 SA-FRDLVI--KHGAIDPLLALLAVP-DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVL 268 (529)
T ss_dssp HH-HHHHHH--HTTCHHHHHHTTCSS-CGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS-CHHHH
T ss_pred HH-HHHHHH--HcCCcHHHHHHHhcc-chhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC-cHHHH
Confidence 34 378887 899999999999865 3 34678899999999998765555554478999999999997 99999
Q ss_pred HHHHHHHHHhccCcchHHH-HHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHH
Q 036338 252 EASLSCLITISSSKRAKTK-LINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQG 329 (408)
Q Consensus 252 ~~A~~aL~~Ls~~~~n~~~-~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~ 329 (408)
..|+++|.+|+.+..++.. +++.|+++.|+.+|.++ +..++..|+.+|.+|+. +++.
T Consensus 269 ~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~---------------------~~~v~~~a~~aL~nl~~~~~~~ 327 (529)
T 3tpo_A 269 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT---------------------ELPIVTPALRAIGNIVTGTDEQ 327 (529)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS---------------------CHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC---------------------ChhHHHHHHHHHHHHHccchHH
Confidence 9999999999998765554 55899999999999864 78999999999999986 4666
Q ss_pred HHHHHhhcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036338 330 RMEICQDAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFR 388 (408)
Q Consensus 330 ~~~~~~~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~ 388 (408)
+..+.. .|+++.|+.+|.. ...+.+++.|+++.|+.+|+++. ..+|..|..+|..+.
T Consensus 328 ~~~i~~-~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nl~ 405 (529)
T 3tpo_A 328 TQKVID-AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD-FKTQKAAAWAITNYT 405 (529)
T ss_dssp HHHHHH-TTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHH
T ss_pred HHHHhh-cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCC-HHHHHHHHHHHHHHH
Confidence 666666 5999999986532 45566788999999999998764 556777777777665
Q ss_pred h
Q 036338 389 V 389 (408)
Q Consensus 389 ~ 389 (408)
.
T Consensus 406 ~ 406 (529)
T 3tpo_A 406 S 406 (529)
T ss_dssp H
T ss_pred c
Confidence 4
No 15
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.92 E-value=9e-23 Score=187.84 Aligned_cols=235 Identities=18% Similarity=0.257 Sum_probs=200.6
Q ss_pred HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH
Q 036338 101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH 179 (408)
Q Consensus 101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~ 179 (408)
.++.|++.|++++.+ +..|++.|.+++..++.++..+.+. |+++.|+.+|++++ ..+++.|+.+|.+|+. ++++.
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~--~~~~~ 78 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDA-GGVEVLVKLLTSTD-SEVQKEAARALANIAS--GPDEA 78 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSC-HHHHHHHHHHHHHHTT--SCHHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHC-CCHHHHHHHHhCCC-HHHHHHHHHHHHHHHc--CChHH
Confidence 578999999999888 9999999999999888899999999 99999999999877 4455999999999997 43443
Q ss_pred HHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhh-cCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHH
Q 036338 180 LMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIA-GDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCL 258 (408)
Q Consensus 180 ~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La-~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL 258 (408)
+..+. +.|+++.|+.+|+++ +.+++..|+++|.+|+ .+++++..+.. .|+++.|+++|+++ ++.++..|+++|
T Consensus 79 -~~~~~--~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~~-~~~~~~~a~~~L 152 (252)
T 4hxt_A 79 -IKAIV--DAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLLTST-DSEVQKEAARAL 152 (252)
T ss_dssp -HHHHH--HTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred -HHHHH--HCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 66676 899999999999998 9999999999999999 56678888887 89999999999987 899999999999
Q ss_pred HHhccCcc-hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHHhh
Q 036338 259 ITISSSKR-AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQGRMEICQD 336 (408)
Q Consensus 259 ~~Ls~~~~-n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~ 336 (408)
.+|+...+ ++..+++.|+++.|+.+|.++ ++.++..|+++|.+|+. +++.+..
T Consensus 153 ~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---------------------~~~v~~~a~~~L~~l~~~~~~~~~~---- 207 (252)
T 4hxt_A 153 ANIASGPDEAIKAIVDAGGVEVLVKLLTST---------------------DSEVQKEAARALANIASGPTSAIKA---- 207 (252)
T ss_dssp HHHTTSCHHHHHHHHHTTHHHHHHHHTTCS---------------------CHHHHHHHHHHHHHHTTSBHHHHHH----
T ss_pred HHHHcCCHHHHHHHHHCcCHHHHHHHHCCC---------------------CHHHHHHHHHHHHHHHcCCHHHHHH----
Confidence 99998654 567888999999999999864 78999999999999987 3433332
Q ss_pred cCchHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 337 AALLNGVVQKMLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 337 ~g~i~~lv~~l~~~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
+.+.|+++.|+.+++. .++.+|+.|..+|..|..
T Consensus 208 ------------------l~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 208 ------------------IVDAGGVEVLQKLLTS-TDSEVQKEAQRALENIKS 241 (252)
T ss_dssp ------------------HHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHHH
T ss_pred ------------------HHHCCCHHHHHHHHCC-CcHHHHHHHHHHHHHHHc
Confidence 2345677777777764 457889999999998887
No 16
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.91 E-value=4.5e-23 Score=212.10 Aligned_cols=259 Identities=12% Similarity=0.203 Sum_probs=213.4
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc----chhhHHHHHHHHHHhccc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN----DVNMLKQVIRVLDLILNK 173 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~----~~~~~e~A~~~L~~L~~~ 173 (408)
.+.|+.|+..|.+++.+ +..|+++|.+++.+++.+|..+.+. |++++|+.+|...+ ....++.++++|.+++.
T Consensus 161 ~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~-g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~- 238 (529)
T 3tpo_A 161 GGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKH-GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR- 238 (529)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-TCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHc-CCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHh-
Confidence 45789999999999988 9999999999999999999999999 99999999998765 23456889999999986
Q ss_pred ccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHH
Q 036338 174 IEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEA 253 (408)
Q Consensus 174 ~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 253 (408)
+..+. ..... ..|++|.|+++|.++ +.+++..|+++|.+++...+.+..+....|+++.|+.+|.++ +..++..
T Consensus 239 -~~~~~-~~~~~--~~~~lp~L~~LL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~ 312 (529)
T 3tpo_A 239 -NKNPA-PPLDA--VEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTP 312 (529)
T ss_dssp -CCTTC-CCHHH--HHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHH
T ss_pred -cccch-hhHHH--HhhHHHHHHHHhcCC-cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC-ChhHHHH
Confidence 43332 22222 468899999999999 999999999999999988765554443489999999999987 8999999
Q ss_pred HHHHHHHhccCc-chHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC-HHHHH
Q 036338 254 SLSCLITISSSK-RAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT-KQGRM 331 (408)
Q Consensus 254 A~~aL~~Ls~~~-~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~ 331 (408)
|+++|+|++.+. .++..+++.|+++.|+.+|.++ +..+++.|+++|.||+.+ ++.+.
T Consensus 313 a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~---------------------~~~i~~~a~~aL~nl~~~~~~~~~ 371 (529)
T 3tpo_A 313 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP---------------------KTNIQKEATWTMSNITAGRQDQIQ 371 (529)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS---------------------SHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC---------------------CHHHHHHHHHHHHHHhcccHHHHH
Confidence 999999998865 4677778999999999999865 789999999999999975 55555
Q ss_pred HHHhhcCchHHHHHHHHH----------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036338 332 EICQDAALLNGVVQKMLK----------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFR 388 (408)
Q Consensus 332 ~~~~~~g~i~~lv~~l~~----------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~ 388 (408)
.+.. .|++|.|+.+|.. +....+++.|++++|+.+|.+. ++.++..+...|..+-
T Consensus 372 ~v~~-~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~-d~~i~~~~L~aL~nil 448 (529)
T 3tpo_A 372 QVVN-HGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNIF 448 (529)
T ss_dssp HHHH-TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHh-cCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 5555 5999999996544 2345577899999999999765 5667887777766554
No 17
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.91 E-value=7.6e-23 Score=189.20 Aligned_cols=236 Identities=17% Similarity=0.261 Sum_probs=196.2
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
....+.++..|++++.+ +..|++.|+.+...++.++..+.+. |+|+.|+.+|++.+ ..+++.|+.+|.+++. +++
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~-g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~--~~~ 86 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDA-GALPALVQLLSSPN-EQILQEALWALSNIAS--GGN 86 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHGGGCSC-HHHHHHHHHHHHHHTT--SCH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHc-CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhc--CCH
Confidence 34577899999999988 9999999988776678889999999 99999999999877 4455999999999996 444
Q ss_pred HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchh-hHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSK-VKIAERDGLLAETVKSLSLDSDRRLIEASLS 256 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~ 256 (408)
+. +..+. +.|+++.|+.+|+++ +.+++..|+++|.+|+.+++.+ ..+.. .|+++.|+++|+++ ++.+++.|++
T Consensus 87 ~~-~~~i~--~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~-~~~v~~~a~~ 160 (252)
T 4db8_A 87 EQ-IQAVI--DAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSP-NEQILQEALW 160 (252)
T ss_dssp HH-HHHHH--HTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHGGGCS-CHHHHHHHHH
T ss_pred HH-HHHHH--HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHH-CCCHHHHHHHHhCC-CHHHHHHHHH
Confidence 43 66666 889999999999998 9999999999999999999888 66766 89999999999987 8999999999
Q ss_pred HHHHhccCc-chHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHH
Q 036338 257 CLITISSSK-RAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQGRMEIC 334 (408)
Q Consensus 257 aL~~Ls~~~-~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~ 334 (408)
+|.+|+... .++..+++.|+++.|+.+|.++ +..+++.|+++|.+|+. +++++..+.
T Consensus 161 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~ 219 (252)
T 4db8_A 161 ALSNIASGGNEQIQAVIDAGALPALVQLLSSP---------------------NEQILQEALWALSNIASGGNEQKQAVK 219 (252)
T ss_dssp HHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS---------------------SHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC---------------------CHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999865 5677778999999999999864 88999999999999985 444444333
Q ss_pred hhcCchHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036338 335 QDAALLNGVVQKMLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFR 388 (408)
Q Consensus 335 ~~~g~i~~lv~~l~~~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~ 388 (408)
+.|+++.|+.++++. ++.+|+.|..+|..|.
T Consensus 220 ----------------------~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 220 ----------------------EAGALEKLEQLQSHE-NEKIQKEAQEALEKLQ 250 (252)
T ss_dssp ----------------------HTTHHHHHHTTTTCS-SSHHHHTHHHHHHTTC
T ss_pred ----------------------HCCcHHHHHHHhCCC-CHHHHHHHHHHHHHHh
Confidence 445666666666544 5668888877776654
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.90 E-value=1.8e-22 Score=207.00 Aligned_cols=262 Identities=14% Similarity=0.187 Sum_probs=217.4
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhCh-hhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESD-ENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED 176 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~-~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~ 176 (408)
...++.|++.|.+++.+ +..|++.|+.++.... ..+..+++. |+||.|+.+|.++++..+++.|+++|.+++. ++
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~-g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~--~~ 149 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVQFLTREDFPQLQFEAAWALTNIAS--GT 149 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHT-TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHT--SC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHC-CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC--CC
Confidence 45689999999999888 9999999999976544 667888888 9999999999887534556999999999997 44
Q ss_pred hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHH
Q 036338 177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASL 255 (408)
Q Consensus 177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~ 255 (408)
.+. +..+. +.|+++.|+.+|.++ +.+++..|+++|.+|+.+. +.+..+.. .|++++|+.+|....+..+++.|+
T Consensus 150 ~~~-~~~~~--~~g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~i~~-~g~l~~Ll~lL~~~~~~~v~~~a~ 224 (528)
T 4b8j_A 150 SEN-TKVVI--DHGAVPIFVKLLGSS-SDDVREQAVWALGNVAGDSPKCRDLVLA-NGALLPLLAQLNEHTKLSMLRNAT 224 (528)
T ss_dssp HHH-HHHHH--HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHTCHHHHHHHHH-TTCHHHHHHTCCTTCCHHHHHHHH
T ss_pred HHH-HHHHH--hCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHH-CCcHHHHHHHHhcCCCHHHHHHHH
Confidence 443 56666 789999999999998 9999999999999999774 46777776 799999999995444899999999
Q ss_pred HHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHh
Q 036338 256 SCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQ 335 (408)
Q Consensus 256 ~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 335 (408)
++|++|+....+.......|+++.|+.+|.+. +..++..|+++|.+|+.....+.+.+.
T Consensus 225 ~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~---------------------~~~v~~~a~~aL~~l~~~~~~~~~~~~ 283 (528)
T 4b8j_A 225 WTLSNFCRGKPQPSFEQTRPALPALARLIHSN---------------------DEEVLTDACWALSYLSDGTNDKIQAVI 283 (528)
T ss_dssp HHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCC---------------------CHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCC---------------------CHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999866555666799999999999854 789999999999999987666654544
Q ss_pred hcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 336 DAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 336 ~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
..|+++.|+++|.. ...+.+++.|+++.|+.+|+....+.+++.|..+|..|..
T Consensus 284 ~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 284 EAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 46999999996543 3455677899999999999876578889999888888875
No 19
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.90 E-value=6.5e-23 Score=187.62 Aligned_cols=218 Identities=15% Similarity=0.105 Sum_probs=169.5
Q ss_pred ChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhc
Q 036338 142 GLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAG 220 (408)
Q Consensus 142 G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~ 220 (408)
-.+|.||.+|.+++ +.+++..|++.|.+|+. .+++. +..|. +.|+||+||++|+++ +.++|+.|+++|.+|+.
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~--~~~~~-r~~I~--~~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECF--QKSEA-RKRVN--QLRGILKLLQLLKVQ-NEDVQRAVCGALRNLVF 81 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHH--HCHHH-HHHHH--HTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHc--CCcHH-HHHHH--HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHh
Confidence 46899999999887 34666889999999986 44443 66776 899999999999999 99999999999999998
Q ss_pred -CcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCC
Q 036338 221 -DADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGN 299 (408)
Q Consensus 221 -~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~ 299 (408)
++++|..|.+ .|+||+||++|++..+.++++.|+++||||+..+.+|..+++. +||+|++++..+.. |...+
T Consensus 82 ~~~~nk~~I~~-~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~s--G~~~~--- 154 (233)
T 3tt9_A 82 EDNDNKLEVAE-LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFS--GWPEG--- 154 (233)
T ss_dssp TCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHH--CCCGG---
T ss_pred CCHHHHHHHHH-cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhcccc--CCccc---
Confidence 4789999998 8999999999985338899999999999999999999999974 79999998742200 00000
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHHhhcCchHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhcCCHHHHH
Q 036338 300 GNGNGSGNGTVLITEKALRLVEILST-TKQGRMEICQDAALLNGVVQKMLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQ 378 (408)
Q Consensus 300 ~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~~~g~i~~lv~~l~~~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~ 378 (408)
.........+..++++|.++|+||+. ++++|+++.+.+|+|+.||.++. .-+. ....+++.+|
T Consensus 155 ~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~-----~~~~-----------~~~~~~k~~E 218 (233)
T 3tt9_A 155 DYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVR-----GTIA-----------DYQPDDKATE 218 (233)
T ss_dssp GCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHH-----HHHH-----------TTCTTCHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHH-----hhhh-----------cccchhHHHH
Confidence 00000112467999999999999987 68999999987788899998522 1110 1233566789
Q ss_pred HHHHHHHHHh
Q 036338 379 MSADLLKIFR 388 (408)
Q Consensus 379 ~A~~lL~~l~ 388 (408)
.|..+|+.|+
T Consensus 219 n~v~~L~nLs 228 (233)
T 3tt9_A 219 NCVCILHNLS 228 (233)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9988888776
No 20
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.90 E-value=1.7e-21 Score=199.73 Aligned_cols=257 Identities=15% Similarity=0.165 Sum_probs=216.3
Q ss_pred HHHHHHHHHHhcCC-hh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 100 DEVKDIIRVAISKN-ED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 100 ~~i~~Lv~~L~s~~-~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
+.++.|++.|.+.+ ++ +..|++.|.+++.++++++..+++. |+||.|+.+|.+++ ..+++.|+++|.+|+. ...
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~--~~~ 192 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDH-GAVPIFVKLLGSSS-DDVREQAVWALGNVAG--DSP 192 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSC-HHHHHHHHHHHHHHHH--TCH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhC-CcHHHHHHHhcCCC-HHHHHHHHHHHHHHhC--CCh
Confidence 46889999999886 66 9999999999999889999999999 99999999999876 3455999999999986 333
Q ss_pred HHHHHHHhccCcccHHHHHHHH-hcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338 178 QHLMNLILKRDQDCLNSLLLVL-KQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS 256 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL-~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~ 256 (408)
. .+..+. +.|++++|+.+| .+. +..++..|+++|.+|+........... .|+++.|+.+|.++ ++.++..|++
T Consensus 193 ~-~~~~i~--~~g~l~~Ll~lL~~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~l~~L~~lL~~~-~~~v~~~a~~ 266 (528)
T 4b8j_A 193 K-CRDLVL--ANGALLPLLAQLNEHT-KLSMLRNATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSN-DEEVLTDACW 266 (528)
T ss_dssp H-HHHHHH--HTTCHHHHHHTCCTTC-CHHHHHHHHHHHHHHHCSSSCCCHHHH-TTHHHHHHHHTTCC-CHHHHHHHHH
T ss_pred h-hHHHHH--HCCcHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCCCcHHHH-HHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 3 366776 789999999999 455 899999999999999988654555555 79999999999987 8999999999
Q ss_pred HHHHhccCcchH-HHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHH
Q 036338 257 CLITISSSKRAK-TKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQGRMEIC 334 (408)
Q Consensus 257 aL~~Ls~~~~n~-~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~ 334 (408)
+|.+|+....++ ..+++.|+++.|+.+|.++ +..++..|+++|.+|+. .+..+..+.
T Consensus 267 aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~---------------------~~~v~~~a~~~L~nl~~~~~~~~~~~~ 325 (528)
T 4b8j_A 267 ALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP---------------------SPSVLIPALRTVGNIVTGDDAQTQCII 325 (528)
T ss_dssp HHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS---------------------CHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC---------------------ChhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999887765 4666899999999999864 77999999999999997 566666666
Q ss_pred hhcCchHHHHHHHHH----------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 335 QDAALLNGVVQKMLK----------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 335 ~~~g~i~~lv~~l~~----------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
. .|++|.|+++|.. +..+.+++.|+++.|+.+|+.. .+.+|+.|..+|..+..
T Consensus 326 ~-~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~ 400 (528)
T 4b8j_A 326 D-HQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATS 400 (528)
T ss_dssp T-TTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred H-hhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHc
Confidence 5 5999999996643 2345567789999999999876 67789988888888776
No 21
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=5.9e-22 Score=178.23 Aligned_cols=196 Identities=20% Similarity=0.300 Sum_probs=171.7
Q ss_pred HHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH
Q 036338 100 DEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ 178 (408)
Q Consensus 100 ~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~ 178 (408)
...+.|+..|++.+.+ +..|++.|.+++..++.++..+.+. |+++.|+.+|++++ ..+++.|+++|.+|+. ++++
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~--~~~~ 87 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDA-GALPALVQLLSSPN-EQILQEALWALSNIAS--GGNE 87 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCSC-HHHHHHHHHHHHHHTT--SCHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHcCCC-HHHHHHHHHHHHHHhc--CCcH
Confidence 4467788999999888 9999999999998889999999999 99999999999876 4455999999999986 4444
Q ss_pred HHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338 179 HLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC 257 (408)
Q Consensus 179 ~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a 257 (408)
. +..+. +.|+++.|+.+|+++ +..++..|+++|.+|+... +.+..+.. .|+++.|+++|+++ ++.+++.|+++
T Consensus 88 ~-~~~i~--~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~-~~~v~~~a~~a 161 (210)
T 4db6_A 88 Q-IQAVI--DAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSP-NEQILQEALWA 161 (210)
T ss_dssp H-HHHHH--HTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred H-HHHHH--HCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCC-CHHHHHHHHHH
Confidence 3 56666 899999999999999 9999999999999999755 45566666 89999999999997 89999999999
Q ss_pred HHHhccC-cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338 258 LITISSS-KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT 326 (408)
Q Consensus 258 L~~Ls~~-~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~ 326 (408)
|.+|+.. ++++..+++.|+++.|+.++.++ +..+++.|+.+|.+|+.+
T Consensus 162 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~---------------------~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 162 LSNIASGGNEQKQAVKEAGALEKLEQLQSHE---------------------NEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS---------------------CHHHHHHHHHHHHHHCC-
T ss_pred HHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC---------------------CHHHHHHHHHHHHHHhcC
Confidence 9999997 66888888999999999999864 889999999999999863
No 22
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.88 E-value=3.9e-23 Score=163.36 Aligned_cols=77 Identities=32% Similarity=0.421 Sum_probs=71.2
Q ss_pred CCcCCCCCCcccccCccccCCCceecCCC-CcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338 4 DDLYITVPSFFRCPISLDVMKSPVSLCTG-VTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ 81 (408)
Q Consensus 4 ~~~~~~~~~~~~Cpi~~~~~~dPv~~~cg-h~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~ 81 (408)
+.....+|++|+||||+++|+|||+++|| |+|||.||++||.. +.+||.|++++...+++||..|++.|+.|+.++.
T Consensus 13 ~~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 90 (98)
T 1wgm_A 13 EETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERK 90 (98)
T ss_dssp CCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHST
T ss_pred hhhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcc
Confidence 34556789999999999999999999999 99999999999985 6789999999999999999999999999999876
No 23
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.88 E-value=7.6e-21 Score=194.11 Aligned_cols=279 Identities=18% Similarity=0.190 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHhcC-Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338 99 QDEVKDIIRVAISK-NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED 176 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~-~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~ 176 (408)
.+.++.|++.|.++ +.+ +..|+..|++++.. ++++..+.+. |+||.|+.+|++++ ..++..|+.+|.+|+. .+
T Consensus 58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~-g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~--~~ 132 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKS-GGIPALVKMLGSPV-DSVLFYAITTLHNLLL--HQ 132 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHT-THHHHHHHHTTCSC-HHHHHHHHHHHHHHHH--HC
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHc-CCHHHHHHHHcCCC-HHHHHHHHHHHHHHhc--CC
Confidence 56789999999865 667 89999999999876 6699999999 99999999999877 4455999999999987 43
Q ss_pred hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHH
Q 036338 177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD-ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASL 255 (408)
Q Consensus 177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~ 255 (408)
++. +..+. +.|+++.|+++|+++ +.+.+..++.+|.+++.. ++++..+.. .|+++.|+++|+++.+...+..+.
T Consensus 133 ~~~-~~~i~--~~g~i~~L~~ll~~~-~~~~~~~~~~~L~~la~~~~~~~~~i~~-~~~i~~L~~ll~~~~~~~~~~~a~ 207 (529)
T 1jdh_A 133 EGA-KMAVR--LAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTS 207 (529)
T ss_dssp TTH-HHHHH--HHTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred cch-HHHHH--HcCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHHHHHHHhCChHHHHHHHH
Confidence 443 66666 889999999999998 999999999999999975 678888887 799999999999876667888899
Q ss_pred HHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCC----------CCCCCCCCCCCCC---------CCCCCCcchHHHH
Q 036338 256 SCLITISSSKRAKTKLINHKLITELGKLITDGHNG----------NGSGNGNGNGNGN---------GSGNGTVLITEKA 316 (408)
Q Consensus 256 ~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~----------~~~~~~~~~~~~~---------~~~~~~~~~~~~a 316 (408)
.+|++|+.+++++..+++.|+++.|+.++.++... +-+..... .... .-.+.++.+++.|
T Consensus 208 ~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~i~~L~~ll~~~~~~v~~~a 286 (529)
T 1jdh_A 208 RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK-QEGMEGLLGTLVQLLGSDDINVVTCA 286 (529)
T ss_dssp HHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT-CSCCHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChh-hHHHHhHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999999999999999988652000 00000000 0000 0013467889999
Q ss_pred HHHHHHHhCC-HHHHHHHHhhcCchHHHHHHHHH--------------------------HHHHHHHhcCcHHHHHHHHh
Q 036338 317 LRLVEILSTT-KQGRMEICQDAALLNGVVQKMLK--------------------------TAQEAVSSSNVLTKILLLMQ 369 (408)
Q Consensus 317 ~~~L~~L~~~-~~~~~~~~~~~g~i~~lv~~l~~--------------------------~~~~~~~~~g~~~~Ll~ll~ 369 (408)
+++|.+|+.. ++++..+... |+++.|+++|.. ..+..+++.|+++.|+.+|+
T Consensus 287 ~~~L~~L~~~~~~~~~~~~~~-~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~ 365 (529)
T 1jdh_A 287 AGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH 365 (529)
T ss_dssp HHHHHHHTTTCHHHHHHHHHT-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTS
T ss_pred HHHHHHHhcCCHHHHHHHHHc-CChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhc
Confidence 9999999875 6788888875 899999997753 13456778899999999998
Q ss_pred hcCCHHHHHHHHHHHHHHhh
Q 036338 370 SNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 370 ~~~~~~~k~~A~~lL~~l~~ 389 (408)
+...+.+++.|..+|..+..
T Consensus 366 ~~~~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 366 PPSHWPLIKATVGLIRNLAL 385 (529)
T ss_dssp TTCCHHHHHHHHHHHHHHTT
T ss_pred cccchHHHHHHHHHHHHHhc
Confidence 87766788888788887765
No 24
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.88 E-value=3.7e-23 Score=159.41 Aligned_cols=76 Identities=33% Similarity=0.425 Sum_probs=70.2
Q ss_pred CcCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338 5 DLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ 81 (408)
Q Consensus 5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~ 81 (408)
.....+|++|+||||+++|+|||+++|||+|||.||++||.. +.+||.|++++...+++||..+++.|+.|+.++.
T Consensus 6 ~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 6 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CCCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hhhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 345678999999999999999999999999999999999985 6789999999998999999999999999998764
No 25
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.88 E-value=6.4e-23 Score=162.77 Aligned_cols=75 Identities=33% Similarity=0.435 Sum_probs=70.0
Q ss_pred cCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338 6 LYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ 81 (408)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~ 81 (408)
....+|++|+||||+++|+|||+++|||+|||.||++||. ++.+||.|+++++..+++||..|++.|+.|+.++.
T Consensus 22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence 4457899999999999999999999999999999999998 46789999999999999999999999999999876
No 26
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.87 E-value=8.1e-21 Score=194.96 Aligned_cols=258 Identities=15% Similarity=0.169 Sum_probs=214.1
Q ss_pred HHHHHHHHHHhcCChh-HHHHHHHHHHHhhh-ChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 100 DEVKDIIRVAISKNED-FSENLTKIVAFAKE-SDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 100 ~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~-~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
..++.+++.|++++.+ +..|+..|+.+... +...+..+++. |++|.|+.+|.++++..++..|+++|.+++. ++.
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~-g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~--~~~ 163 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQA-GVVPRLVEFMRENQPEMLQLEAAWALTNIAS--GTS 163 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHT-TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTT--SCH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHC-CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC--CCH
Confidence 4588999999998888 99999999999654 34556778888 9999999999987434455999999999997 444
Q ss_pred HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS 256 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~ 256 (408)
+. +..+. +.|+++.|+.+|.++ +.++|..|+++|.+|+.+. +.+..+.. .|++++|+.+|.+. +..+++.|++
T Consensus 164 ~~-~~~~~--~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~-~~~v~~~a~~ 237 (530)
T 1wa5_B 164 AQ-TKVVV--DADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDYRDYVLQ-CNAMEPILGLFNSN-KPSLIRTATW 237 (530)
T ss_dssp HH-HHHHH--HTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHGGGSC-CHHHHHHHHH
T ss_pred HH-HHHHH--HCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCccchHHHHH-cCcHHHHHHHhccC-CHHHHHHHHH
Confidence 43 55565 789999999999998 9999999999999999874 57777776 79999999999985 8999999999
Q ss_pred HHHHhccCc-chHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC-HHHHHHHH
Q 036338 257 CLITISSSK-RAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT-KQGRMEIC 334 (408)
Q Consensus 257 aL~~Ls~~~-~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~ 334 (408)
+|.+|+.+. .+.......|+++.|+.+|.+. +..++..|+++|.+|+.. ++.+..+.
T Consensus 238 ~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~---------------------d~~v~~~a~~~L~~L~~~~~~~~~~~~ 296 (530)
T 1wa5_B 238 TLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM---------------------DTETLVDACWAISYLSDGPQEAIQAVI 296 (530)
T ss_dssp HHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC---------------------CHHHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC---------------------CHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999876 5555666799999999999854 789999999999999975 66667666
Q ss_pred hhcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 335 QDAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 335 ~~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
. .|+++.|+++|.. ...+.+++.|+++.|+.+|+.. .+.+|+.|..+|..+..
T Consensus 297 ~-~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 297 D-VRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITA 370 (530)
T ss_dssp H-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred h-cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 6 4899999996533 3345566789999999999866 57789999888888875
No 27
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.87 E-value=2.2e-20 Score=191.80 Aligned_cols=257 Identities=13% Similarity=0.127 Sum_probs=214.5
Q ss_pred HHHHHHHHHHhcC-Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 100 DEVKDIIRVAISK-NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 100 ~~i~~Lv~~L~s~-~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
+.++.|++.|.+. +.+ +..|++.|.+++..++..+..+++. |+++.|+.+|.+++ ..+++.|+++|.+|+. ..+
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~-g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~--~~~ 205 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA-DAVPLFIQLLYTGS-VEVKEQAIWALGNVAG--DST 205 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-TCHHHHHHHHHHCC-HHHHHHHHHHHHHHHT--TCH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHC-CCHHHHHHHHcCCC-HHHHHHHHHHHHHHhC--CCc
Confidence 4588999999887 677 9999999999999888899999998 99999999999876 4455999999999996 333
Q ss_pred HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS 256 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~ 256 (408)
.. +..+. ..|+++.|+.+|.+. +.+++..|+++|.+|+... ........ .|+++.|+.+|.++ ++.++..|++
T Consensus 206 ~~-~~~~~--~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~~~-d~~v~~~a~~ 279 (530)
T 1wa5_B 206 DY-RDYVL--QCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVV-SQALPTLAKLIYSM-DTETLVDACW 279 (530)
T ss_dssp HH-HHHHH--HTTCHHHHHHGGGSC-CHHHHHHHHHHHHHHHCCSSSCCCHHHH-GGGHHHHHHHTTCC-CHHHHHHHHH
T ss_pred cc-hHHHH--HcCcHHHHHHHhccC-CHHHHHHHHHHHHHHhCCCCCCCcHHHH-HhHHHHHHHHHcCC-CHHHHHHHHH
Confidence 33 66666 789999999999998 9999999999999999875 44444444 78999999999987 8999999999
Q ss_pred HHHHhccCc-chHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC-HHHHHHHH
Q 036338 257 CLITISSSK-RAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT-KQGRMEIC 334 (408)
Q Consensus 257 aL~~Ls~~~-~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~ 334 (408)
+|.+|+... +.+..+++.|+++.|+.+|.++ +..++..|+.+|.+|+.. ++....+.
T Consensus 280 ~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~---------------------~~~v~~~a~~~L~~l~~~~~~~~~~~~ 338 (530)
T 1wa5_B 280 AISYLSDGPQEAIQAVIDVRIPKRLVELLSHE---------------------STLVQTPALRAVGNIVTGNDLQTQVVI 338 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS---------------------CHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC---------------------ChhhHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999865 4677777899999999999864 789999999999999964 55566665
Q ss_pred hhcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 335 QDAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 335 ~~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
. .|+++.|+.+|.. +..+.+++.|+++.|+.+|+.. .+.+|..|..+|..+..
T Consensus 339 ~-~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~ 412 (530)
T 1wa5_B 339 N-AGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASS 412 (530)
T ss_dssp H-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred H-cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHh
Confidence 5 4899999986533 3445566789999999999764 57789988888887765
No 28
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.87 E-value=5.2e-20 Score=183.90 Aligned_cols=257 Identities=16% Similarity=0.168 Sum_probs=211.3
Q ss_pred HHHHHHHHHHhcC-Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 100 DEVKDIIRVAISK-NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 100 ~~i~~Lv~~L~s~-~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
+.++.|++.|++. +.+ +..|++.|.+++..++++...+.+. |++|.|+.+|++++ ..+++.|+++|.+++. .+.
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~--~~~ 139 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQA-GAVPIFIELLSSEF-EDVQEQAVWALGNIAG--DST 139 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHT-THHHHHHHHTTCSC-HHHHHHHHHHHHHHHT--TCH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhC-CCHHHHHHHHcCCC-HHHHHHHHHHHHHHcc--CCH
Confidence 6789999999988 677 9999999999999888888888888 99999999999876 3445999999999996 443
Q ss_pred HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc--chhhHHhhhcChHHHHHHhcccCCCHHHHHHHH
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA--DSKVKIAERDGLLAETVKSLSLDSDRRLIEASL 255 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~ 255 (408)
+. +..+. +.|+++.|+.+|.+..+.+++..|+++|.+|+... ..+..+. .++++.|+++|+++ ++.++..|+
T Consensus 140 ~~-~~~~~--~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~l~~~-~~~v~~~a~ 213 (450)
T 2jdq_A 140 MC-RDYVL--DCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV--SPCLNVLSWLLFVS-DTDVLADAC 213 (450)
T ss_dssp HH-HHHHH--HTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT--GGGHHHHHHHTTCC-CHHHHHHHH
T ss_pred HH-HHHHH--HCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH--HHHHHHHHHHHccC-CHHHHHHHH
Confidence 33 66666 78999999999996328999999999999999764 3333333 68999999999987 899999999
Q ss_pred HHHHHhccCc-chHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHH-HHHHH
Q 036338 256 SCLITISSSK-RAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQ-GRMEI 333 (408)
Q Consensus 256 ~aL~~Ls~~~-~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~ 333 (408)
++|.+|+... +++..+++.|+++.|+.+|.++ +..+++.|+.+|.+|+...+ .+..+
T Consensus 214 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---------------------~~~v~~~a~~~L~~l~~~~~~~~~~~ 272 (450)
T 2jdq_A 214 WALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN---------------------DYKVVSPALRAVGNIVTGDDIQTQVI 272 (450)
T ss_dssp HHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS---------------------CHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC---------------------chhHHHHHHHHHHHHhhCChHHHHHH
Confidence 9999999865 5677777999999999999854 78999999999999997644 44445
Q ss_pred HhhcCchHHHHHHHHH---------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 334 CQDAALLNGVVQKMLK---------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 334 ~~~~g~i~~lv~~l~~---------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
.. .|+++.|+++|.. +..+.+++.|+++.|+.+|+.. .+.+|..|..+|..+..
T Consensus 273 ~~-~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 273 LN-CSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATS 347 (450)
T ss_dssp HT-TTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred HH-CccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHc
Confidence 55 5899999986533 3445566789999999999865 57788888888887765
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.87 E-value=2.2e-20 Score=196.44 Aligned_cols=279 Identities=18% Similarity=0.188 Sum_probs=220.5
Q ss_pred HHHHHHHHHHHhcC-Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338 99 QDEVKDIIRVAISK-NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED 176 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~-~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~ 176 (408)
.+.++.|++.|.++ +.+ +..|+..|+.++.. ++++..+.+. |+|+.|+.+|++++ ..+++.|+.+|.+|+. .+
T Consensus 55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~-g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~--~~ 129 (644)
T 2z6h_A 55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKS-GGIPALVKMLGSPV-DSVLFYAITTLHNLLL--HQ 129 (644)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTT-THHHHHHHHTTCSS-HHHHHHHHHHHHHHHH--HS
T ss_pred cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHc-CCHHHHHHHHhCCC-HHHHHHHHHHHHHHHh--Cc
Confidence 46789999999876 666 89999999999876 5699999999 99999999999876 4455999999999986 43
Q ss_pred hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhc-CcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHH
Q 036338 177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAG-DADSKVKIAERDGLLAETVKSLSLDSDRRLIEASL 255 (408)
Q Consensus 177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~ 255 (408)
++. +..+. +.|+++.|+++|+++ +...+..++.+|.+|+. +++++..+.. .|+++.|+++|+++.....++.++
T Consensus 130 ~~~-~~~v~--~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~~~~~~~~~i~~-~g~v~~Lv~lL~~~~~~~~~~~a~ 204 (644)
T 2z6h_A 130 EGA-KMAVR--LAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTS 204 (644)
T ss_dssp TTH-HHHHH--HTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred chh-HHHHH--HCCChHHHHHHHCcC-CHHHHHHHHHHHHHHHhcCcHHHHHHHH-cCChHHHHHHHHcCChHHHHHHHH
Confidence 343 55665 789999999999998 88888888999999996 6788888888 799999999999875678889999
Q ss_pred HHHHHhccCcchHHHHHhcCcHHHHHHHhccCC----------CCCCCCCCCCCCCCC---------CCCCCCcchHHHH
Q 036338 256 SCLITISSSKRAKTKLINHKLITELGKLITDGH----------NGNGSGNGNGNGNGN---------GSGNGTVLITEKA 316 (408)
Q Consensus 256 ~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~----------~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a 316 (408)
.+|++|+.++.++..+++.|+++.|+.++.+.. .++-+.+... .... .-.+.+..+++.|
T Consensus 205 ~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~-~~~~~~~i~~Lv~lL~~~d~~v~~~a 283 (644)
T 2z6h_A 205 RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK-QEGMEGLLGTLVQLLGSDDINVVTCA 283 (644)
T ss_dssp HHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTT-CCSCHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchh-hhhhhhHHHHHHHHHcCCCHHHHHHH
Confidence 999999999999999999999999998886420 0000000000 0000 0012467889999
Q ss_pred HHHHHHHhCC-HHHHHHHHhhcCchHHHHHHHHH--------------------------HHHHHHHhcCcHHHHHHHHh
Q 036338 317 LRLVEILSTT-KQGRMEICQDAALLNGVVQKMLK--------------------------TAQEAVSSSNVLTKILLLMQ 369 (408)
Q Consensus 317 ~~~L~~L~~~-~~~~~~~~~~~g~i~~lv~~l~~--------------------------~~~~~~~~~g~~~~Ll~ll~ 369 (408)
+++|.+|+.. ++++..+... |+++.|+++|.. ..+..++..|+++.|+.+|+
T Consensus 284 ~~aL~~L~~~~~~~~~~v~~~-g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~ 362 (644)
T 2z6h_A 284 AGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH 362 (644)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHc-CCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhC
Confidence 9999999874 6788888774 899999997754 01233667899999999998
Q ss_pred hcCCHHHHHHHHHHHHHHhh
Q 036338 370 SNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 370 ~~~~~~~k~~A~~lL~~l~~ 389 (408)
+...+.+++.|..+|..|..
T Consensus 363 ~~~~~~v~~~a~~~L~nLa~ 382 (644)
T 2z6h_A 363 PPSHWPLIKATVGLIRNLAL 382 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTT
T ss_pred ccCchHHHHHHHHHHHHHcc
Confidence 77666788888888888775
No 30
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.86 E-value=4.8e-20 Score=188.13 Aligned_cols=260 Identities=10% Similarity=0.148 Sum_probs=213.3
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
.+.++.|++.|++.++. +..|+..|.+++.+ +.++..+.+.+|+++.|+.+|.+..+..++..|+.+|.+|+. .++
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~--~~~ 92 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH--HRE 92 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT--SHH
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcC-CccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc--Cch
Confidence 56799999999988888 99999999999975 557766665449999999999876434455999999999987 444
Q ss_pred HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS 256 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~ 256 (408)
+ +..+. +.|+++.|+++|+++ +.+++..|+++|.+|+.++ +.+..+.+ .|+++.|+++|+++ +.+++..++.
T Consensus 93 ~--~~~i~--~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~ll~~~-~~~~~~~~~~ 165 (529)
T 1jdh_A 93 G--LLAIF--KSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKT-NVKFLAITTD 165 (529)
T ss_dssp H--HHHHH--HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHH-HTHHHHHHHGGGCC-CHHHHHHHHH
T ss_pred h--HHHHH--HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHH-cCCHHHHHHHHhcC-CHHHHHHHHH
Confidence 3 66666 789999999999999 9999999999999999874 56667766 89999999999987 8899999999
Q ss_pred HHHHhccC-cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHh
Q 036338 257 CLITISSS-KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQ 335 (408)
Q Consensus 257 aL~~Ls~~-~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 335 (408)
+|.+|+.. ++++..+++.|+++.|+.+|++. ......+.+..+|.+|+.+++++..++.
T Consensus 166 ~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~--------------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 225 (529)
T 1jdh_A 166 CLQILAYGNQESKLIILASGGPQALVNIMRTY--------------------TYEKLLWTTSRVLKVLSVCSSNKPAIVE 225 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC--------------------CCHHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhC--------------------ChHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 99999985 67899999999999999999863 3456778889999999998999988887
Q ss_pred hcCchHHHHHHHH--------------------------------------H----------------------HHHHHH
Q 036338 336 DAALLNGVVQKML--------------------------------------K----------------------TAQEAV 355 (408)
Q Consensus 336 ~~g~i~~lv~~l~--------------------------------------~----------------------~~~~~~ 355 (408)
. |+++.|++++. + +.++.+
T Consensus 226 ~-g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~ 304 (529)
T 1jdh_A 226 A-GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 304 (529)
T ss_dssp T-THHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred C-CCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 5 77776653221 1 355667
Q ss_pred HhcCcHHHHHHHHhhcC-CHHHHHHHHHHHHHHhh
Q 036338 356 SSSNVLTKILLLMQSNC-TPAVRQMSADLLKIFRV 389 (408)
Q Consensus 356 ~~~g~~~~Ll~ll~~~~-~~~~k~~A~~lL~~l~~ 389 (408)
.+.|+++.|+.+|.... .+.+++.|..+|..|..
T Consensus 305 ~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~ 339 (529)
T 1jdh_A 305 CQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 339 (529)
T ss_dssp HHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence 78899999999997643 47789999888887765
No 31
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.86 E-value=1.3e-19 Score=172.19 Aligned_cols=225 Identities=14% Similarity=0.135 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHH-HhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHH
Q 036338 116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVE-ILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNS 194 (408)
Q Consensus 116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~-lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~ 194 (408)
+..|+..|..++.. ..+...+.+. |++|+|+. +|.+++ ..+++.|+++|++++. +++.. +..+. +.|++++
T Consensus 57 k~~Al~~L~~lv~~-~dna~~~~~~-G~l~~Lv~~lL~s~~-~~vr~~Aa~~Lg~ia~--~n~~~-~~~vv--~~g~l~~ 128 (296)
T 1xqr_A 57 REGALELLADLCEN-MDNAADFCQL-SGMHLLVGRYLEAGA-AGLRWRAAQLIGTCSQ--NVAAI-QEQVL--GLGALRK 128 (296)
T ss_dssp HHHHHHHHHHHHTS-HHHHHHHHHT-THHHHHHHTTTTCSS-HHHHHHHHHHHHHHHT--TCHHH-HHHHH--HTTHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHc-CCHHHHHHHHHcCCC-HHHHHHHHHHHHHHHh--CCHHH-HHHHH--HCCCHHH
Confidence 88899999999874 5688888999 99999999 999876 3445999999999997 44443 67777 8899999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccC-cchHHHHH
Q 036338 195 LLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSS-KRAKTKLI 272 (408)
Q Consensus 195 Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~-~~n~~~~~ 272 (408)
|+.+|+++.+..++..|+++|.+|+.+. +....+.. .|++++|+.+|+++ +..++..|+++|.+|+.+ ++.+..++
T Consensus 129 Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~-~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv 206 (296)
T 1xqr_A 129 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR-LDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLC 206 (296)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH-CCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 9999996437899999999999999765 45556666 79999999999997 999999999999999875 56889999
Q ss_pred hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC-HHHHHHHHhhcCchHHHHHHHHHHH
Q 036338 273 NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT-KQGRMEICQDAALLNGVVQKMLKTA 351 (408)
Q Consensus 273 ~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~g~i~~lv~~l~~~~ 351 (408)
+.|+|++|+.+|.++ +..+++.|+.+|.+|+.. +..+...... -+.+..+ +++.
T Consensus 207 ~~g~i~~Lv~LL~~~---------------------d~~v~~~al~aL~~l~~~~~~~~~~~~~~---~~~l~~l-L~~~ 261 (296)
T 1xqr_A 207 SMGMVQQLVALVRTE---------------------HSPFHEHVLGALCSLVTDFPQGVRECREP---ELGLEEL-LRHR 261 (296)
T ss_dssp HTTHHHHHHHHHTSC---------------------CSTHHHHHHHHHHHHHTTCHHHHHHHHCG---GGCHHHH-HHHH
T ss_pred HcCCHHHHHHHHcCC---------------------ChhHHHHHHHHHHHHHhCChhHHHHHhcc---HHHHHHH-HHHH
Confidence 999999999999864 889999999999999975 4444444321 1223332 2121
Q ss_pred HHHHHhcCcHHHHHHHHhh-cCCHHHHHHHHHHHHHHh
Q 036338 352 QEAVSSSNVLTKILLLMQS-NCTPAVRQMSADLLKIFR 388 (408)
Q Consensus 352 ~~~~~~~g~~~~Ll~ll~~-~~~~~~k~~A~~lL~~l~ 388 (408)
+..++. +......++|..++..+-
T Consensus 262 -------------~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 262 -------------CQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp -------------HHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred -------------HHHccchHHHHHHHHHHHHHHHHHc
Confidence 234453 224567788866666554
No 32
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.86 E-value=3.9e-20 Score=194.55 Aligned_cols=260 Identities=10% Similarity=0.149 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
.+.++.|++.|++.++. +..|+..|.+++.+. .++..+....|+++.|+.+|.+..+..++..|+.+|.+|+. .++
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~--~~~ 89 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH--HRE 89 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT--SHH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc--Chh
Confidence 56789999999988888 999999999999875 56776665448999999999876444455999999999987 444
Q ss_pred HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS 256 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~ 256 (408)
+ +..+. +.|+++.|+++|+++ +..++..|+++|.+|+... +.+..+.. .|+++.|+++|+++ +++.+..++.
T Consensus 90 ~--~~~i~--~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~-~g~i~~Lv~lL~~~-~~~~~~~a~~ 162 (644)
T 2z6h_A 90 G--LLAIF--KSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKT-NVKFLAITTD 162 (644)
T ss_dssp H--HHHHH--TTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGCC-CHHHHHHHHH
T ss_pred h--HHHHH--HcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHH-CCChHHHHHHHCcC-CHHHHHHHHH
Confidence 3 66676 889999999999998 9999999999999999875 56666666 89999999999997 8889999999
Q ss_pred HHHHhcc-CcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHh
Q 036338 257 CLITISS-SKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQ 335 (408)
Q Consensus 257 aL~~Ls~-~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 335 (408)
+|.+|+. +++++..+++.|+++.|+.+|++. ....+++.++.+|.+|+.+++++..++.
T Consensus 163 ~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~--------------------~~~~~~~~a~~~L~nLs~~~~~~~~l~~ 222 (644)
T 2z6h_A 163 CLQILAYGNQESKLIILASGGPQALVNIMRTY--------------------TYEKLLWTTSRVLKVLSVCSSNKPAIVE 222 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTC--------------------CCHHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHcCChHHHHHHHHcC--------------------ChHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 9999997 677999999999999999999863 2467789999999999999999999988
Q ss_pred hcCchHHHHHHHH-----------------------------------H-------------------------HHHHHH
Q 036338 336 DAALLNGVVQKML-----------------------------------K-------------------------TAQEAV 355 (408)
Q Consensus 336 ~~g~i~~lv~~l~-----------------------------------~-------------------------~~~~~~ 355 (408)
. |+++.|++++. + +.++.+
T Consensus 223 ~-g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v 301 (644)
T 2z6h_A 223 A-GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 301 (644)
T ss_dssp T-THHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred C-CCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5 77877765321 0 345667
Q ss_pred HhcCcHHHHHHHHhhcCC-HHHHHHHHHHHHHHhh
Q 036338 356 SSSNVLTKILLLMQSNCT-PAVRQMSADLLKIFRV 389 (408)
Q Consensus 356 ~~~g~~~~Ll~ll~~~~~-~~~k~~A~~lL~~l~~ 389 (408)
++.|+++.|+.+|....+ +.+++.|..+|..|..
T Consensus 302 ~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 302 CQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 336 (644)
T ss_dssp HHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 788999999999987543 6789999888888864
No 33
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.86 E-value=1.6e-19 Score=180.42 Aligned_cols=259 Identities=13% Similarity=0.180 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
.+.++.|++.|++++++ +..|++.|.+++..++.++..+.+. |+++.|+.+|.+..+..+++.|+++|.+|+. +..
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~--~~~ 182 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDC-NILPPLLQLFSKQNRLTMTRNAVWALSNLCR--GKS 182 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-TCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC--CSS
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC--CCC
Confidence 35688999999998888 9999999999999888999999998 9999999999964434556999999999986 321
Q ss_pred HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS 256 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~ 256 (408)
+..+..+ -.++++.|+.+|.++ +.+++..++++|.+|+... +.+..+.. .|+++.|+++|+++ ++.++..|++
T Consensus 183 ~~~~~~~---~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~-~~~v~~~a~~ 256 (450)
T 2jdq_A 183 PPPEFAK---VSPCLNVLSWLLFVS-DTDVLADACWALSYLSDGPNDKIQAVID-AGVCRRLVELLMHN-DYKVVSPALR 256 (450)
T ss_dssp SCCCGGG---TGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHTSSSHHHHHHHHH-TTTHHHHHHHTTCS-CHHHHHHHHH
T ss_pred CCCCHHH---HHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHCCCcHHHHHHHH-cCcHHHHHHHHCCC-chhHHHHHHH
Confidence 1102222 368999999999998 9999999999999999865 45566665 79999999999986 8999999999
Q ss_pred HHHHhccCcch-HHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHH
Q 036338 257 CLITISSSKRA-KTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQGRMEIC 334 (408)
Q Consensus 257 aL~~Ls~~~~n-~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~ 334 (408)
+|.+|+...+. +..+++.|+++.|+.+|.++ +..++..|+++|.+|+. +++....+.
T Consensus 257 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~---------------------~~~vr~~a~~~L~~l~~~~~~~~~~~~ 315 (450)
T 2jdq_A 257 AVGNIVTGDDIQTQVILNCSALQSLLHLLSSP---------------------KESIKKEACWTISNITAGNRAQIQTVI 315 (450)
T ss_dssp HHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS---------------------SHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHhhCChHHHHHHHHCccHHHHHHHHcCC---------------------CHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999987664 45566899999999999864 78999999999999996 677777777
Q ss_pred hhcCchHHHHHHHHH----------------------HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 335 QDAALLNGVVQKMLK----------------------TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 335 ~~~g~i~~lv~~l~~----------------------~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
.. |++|.|+++|.. +..+.+++.|+++.|+.+|... ++.+++.|..+|..+..
T Consensus 316 ~~-~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 316 DA-NIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLENILR 390 (450)
T ss_dssp HT-THHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHH
T ss_pred HC-CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 64 899999997654 1233355779999999999765 67789999888877665
No 34
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.86 E-value=1.3e-20 Score=174.17 Aligned_cols=196 Identities=21% Similarity=0.299 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
.+.++.|++.|++.+.+ +..|++.|.+++.+++.++..+.+. |+++.|+.+|++++ ..+++.|+++|.+|+. ++.
T Consensus 53 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~--~~~ 128 (252)
T 4db8_A 53 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA-GALPALVQLLSSPN-EQILQEALWALSNIAS--GGN 128 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHGGGCSC-HHHHHHHHHHHHHHTT--SCH
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHHcCCC-HHHHHHHHHHHHHhhc--CCc
Confidence 35688999999998887 9999999999999889999999999 99999999999876 4455999999999997 444
Q ss_pred HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS 256 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~ 256 (408)
.. ...+. +.|+++.|+++|+++ +.+++..|+++|.+|+... +.+..+.. .|+++.|+++|+++ ++.+++.|++
T Consensus 129 ~~-~~~~~--~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~-~~~v~~~a~~ 202 (252)
T 4db8_A 129 EQ-IQAVI--DAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSP-NEQILQEALW 202 (252)
T ss_dssp HH-HHHHH--HTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTCHHHHHHGGGCS-SHHHHHHHHH
T ss_pred hH-HHHHH--HCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHCCC-CHHHHHHHHH
Confidence 42 25566 899999999999998 9999999999999999865 55566666 89999999999987 9999999999
Q ss_pred HHHHhccC-cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 257 CLITISSS-KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 257 aL~~Ls~~-~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
+|.+|+.. +.++..+++.|+++.|+.++.+. ++.+++.|+++|.+|+.
T Consensus 203 ~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~---------------------~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 203 ALSNIASGGNEQKQAVKEAGALEKLEQLQSHE---------------------NEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS---------------------SSHHHHTHHHHHHTTC-
T ss_pred HHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC---------------------CHHHHHHHHHHHHHHhc
Confidence 99999964 45777888999999999999864 78999999999999975
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.84 E-value=9.8e-20 Score=163.63 Aligned_cols=195 Identities=17% Similarity=0.259 Sum_probs=160.7
Q ss_pred ChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhc-
Q 036338 142 GLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAG- 220 (408)
Q Consensus 142 G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~- 220 (408)
|..+.|+.+|.+.+ ..++..|+++|.+++. .+++. +..+. +.|+++.|+.+|+++ +.+++..|+++|.+|+.
T Consensus 12 ~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~--~~~~~-~~~i~--~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~ 84 (210)
T 4db6_A 12 SELPQMVQQLNSPD-QQELQSALRKLSQIAS--GGNEQ-IQAVI--DAGALPALVQLLSSP-NEQILQEALWALSNIASG 84 (210)
T ss_dssp -CHHHHHHHTTCSC-HHHHHHHHHHHHHHHT--SCHHH-HHHHH--HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTS
T ss_pred chhHHHHHHhcCCC-HHHHHHHHHHHHHHHc--CCHHH-HHHHH--HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcC
Confidence 88999999999877 3445999999999996 44443 56666 889999999999999 99999999999999996
Q ss_pred CcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCc-chHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCC
Q 036338 221 DADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSK-RAKTKLINHKLITELGKLITDGHNGNGSGNGNGN 299 (408)
Q Consensus 221 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~-~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~ 299 (408)
+++++..+.. .|+++.|+++|+++ ++.+++.|+++|.||+... +++..+++.|+++.|+.+|.++
T Consensus 85 ~~~~~~~i~~-~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~------------ 150 (210)
T 4db6_A 85 GNEQIQAVID-AGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP------------ 150 (210)
T ss_dssp CHHHHHHHHH-TTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS------------
T ss_pred CcHHHHHHHH-CCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC------------
Confidence 5567788877 89999999999997 8999999999999999755 4667788999999999999864
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHhCC-HHHHHHHHhhcCchHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhcCCHHHHH
Q 036338 300 GNGNGSGNGTVLITEKALRLVEILSTT-KQGRMEICQDAALLNGVVQKMLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQ 378 (408)
Q Consensus 300 ~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~~~~~~g~i~~lv~~l~~~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~ 378 (408)
+..+++.|+++|.+|+.. ++++..+. +.|+++.|+.++++ .++.+|+
T Consensus 151 ---------~~~v~~~a~~aL~~l~~~~~~~~~~~~----------------------~~g~i~~L~~ll~~-~~~~v~~ 198 (210)
T 4db6_A 151 ---------NEQILQEALWALSNIASGGNEQKQAVK----------------------EAGALEKLEQLQSH-ENEKIQK 198 (210)
T ss_dssp ---------CHHHHHHHHHHHHHHHTSCHHHHHHHH----------------------HTTHHHHHHHGGGC-SCHHHHH
T ss_pred ---------CHHHHHHHHHHHHHHHcCCcHHHHHHH----------------------HCCCHHHHHHHHhC-CCHHHHH
Confidence 789999999999999875 55444333 44666666666654 4677899
Q ss_pred HHHHHHHHHhh
Q 036338 379 MSADLLKIFRV 389 (408)
Q Consensus 379 ~A~~lL~~l~~ 389 (408)
.|..+|+.|..
T Consensus 199 ~a~~aL~~l~~ 209 (210)
T 4db6_A 199 EAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHhc
Confidence 99888887764
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.84 E-value=3e-19 Score=191.63 Aligned_cols=280 Identities=17% Similarity=0.198 Sum_probs=220.1
Q ss_pred HHHHHHHHHHHhcC-Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338 99 QDEVKDIIRVAISK-NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED 176 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~-~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~ 176 (408)
++.++.|++.|+++ +.+ +..|+..|.+++.. +.++..+.+. |+|+.|+.+|++++ ..++..|+.+|.+|+. ..
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~-g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~--~~ 265 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKS-GGIPALVNMLGSPV-DSVLFHAITTLHNLLL--HQ 265 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHT-THHHHHHHHTTCSC-HHHHHHHHHHHHHHHH--HS
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHc-CCHHHHHHHHcCCC-HHHHHHHHHHHHHHhC--CC
Confidence 46788999999866 666 99999999998875 6789999999 99999999999876 4455999999999997 43
Q ss_pred hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhc-CcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHH
Q 036338 177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAG-DADSKVKIAERDGLLAETVKSLSLDSDRRLIEASL 255 (408)
Q Consensus 177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~ 255 (408)
++. +..+. +.|+++.|+.+|.++ +..++..++.+|.+++. +++++..+.. .|+++.|+++|+++.....++.++
T Consensus 266 ~~~-~~~v~--~~g~v~~Lv~lL~~~-~~~v~~~a~~aL~~La~~~~e~~~~i~~-~~~i~~Lv~lL~~~~~~~~~~~a~ 340 (780)
T 2z6g_A 266 EGA-KMAVR--LAGGLQKMVALLNKT-NVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTS 340 (780)
T ss_dssp TTH-HHHHH--HTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred hhh-HHHHH--HcCCHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCChHHHHHHHH-cCCHHHHHHHHhcCCHHHHHHHHH
Confidence 443 66666 789999999999998 99999999999999997 4678888887 799999999999875566778899
Q ss_pred HHHHHhccCcchHHHHHhcCcHHHHHHHhccCCC-------------CCCCCCCCCCCCC-----CCCCCCCcchHHHHH
Q 036338 256 SCLITISSSKRAKTKLINHKLITELGKLITDGHN-------------GNGSGNGNGNGNG-----NGSGNGTVLITEKAL 317 (408)
Q Consensus 256 ~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~-------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~ 317 (408)
.+|++|+....++..+++.|+++.|+.+|.+... -.......+.... ..-.+.+..+++.|+
T Consensus 341 ~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~ 420 (780)
T 2z6g_A 341 RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAA 420 (780)
T ss_dssp HHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999999999999999998865200 0000000000000 000134678899999
Q ss_pred HHHHHHhCC-HHHHHHHHhhcCchHHHHHHHHH-----H---------------------HHHHHHhcCcHHHHHHHHhh
Q 036338 318 RLVEILSTT-KQGRMEICQDAALLNGVVQKMLK-----T---------------------AQEAVSSSNVLTKILLLMQS 370 (408)
Q Consensus 318 ~~L~~L~~~-~~~~~~~~~~~g~i~~lv~~l~~-----~---------------------~~~~~~~~g~~~~Ll~ll~~ 370 (408)
++|.+|+.. ++++..+.. .|+++.|+++|.+ + .+..++..|+++.|+.+|..
T Consensus 421 ~aL~~L~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~ 499 (780)
T 2z6g_A 421 GILSNLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHP 499 (780)
T ss_dssp HHHHHHTSSCHHHHHHHHT-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTST
T ss_pred HHHHHHHhCCHHHHHHHHH-CCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcC
Confidence 999999875 677777776 4899999997754 0 23456778999999999987
Q ss_pred cCCHHHHHHHHHHHHHHhh
Q 036338 371 NCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 371 ~~~~~~k~~A~~lL~~l~~ 389 (408)
...+.+++.|..+|..|..
T Consensus 500 ~~~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 500 PSHWPLIKATVGLIRNLAL 518 (780)
T ss_dssp TCCHHHHHHHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHHHHhc
Confidence 7766788888888888775
No 37
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.84 E-value=1.6e-19 Score=165.97 Aligned_cols=196 Identities=21% Similarity=0.286 Sum_probs=172.1
Q ss_pred HHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH
Q 036338 100 DEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ 178 (408)
Q Consensus 100 ~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~ 178 (408)
+.++.|++.|++++.+ +..|++.|.+++..++.++..+.+. |+++.|+.+|++++ ..+++.|+++|.+|+. .+++
T Consensus 44 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~l~~ll~~~~-~~v~~~a~~~L~~l~~--~~~~ 119 (252)
T 4hxt_A 44 GGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA-GGVEVLVKLLTSTD-SEVQKEAARALANIAS--GPDE 119 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHTTCSS-HHHHHHHHHHHHHHTT--SCHH
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC-CCHHHHHHHHcCCC-HHHHHHHHHHHHHHHc--CCHH
Confidence 5688999999998888 9999999999999889999999999 99999999999766 4455999999999995 3444
Q ss_pred HHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc-hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338 179 HLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD-SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC 257 (408)
Q Consensus 179 ~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a 257 (408)
. +..+. +.|+++.|+++|+++ +.+++..|+++|.+|+...+ .+..+.. .|+++.|+.+|+++ ++.++..|+++
T Consensus 120 ~-~~~~~--~~~~i~~L~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~-~~~v~~~a~~~ 193 (252)
T 4hxt_A 120 A-IKAIV--DAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLLTST-DSEVQKEAARA 193 (252)
T ss_dssp H-HHHHH--HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred H-HHHHH--HCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHH-CcCHHHHHHHHCCC-CHHHHHHHHHH
Confidence 3 56666 789999999999999 99999999999999998654 4466666 89999999999986 89999999999
Q ss_pred HHHhccC-cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338 258 LITISSS-KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT 326 (408)
Q Consensus 258 L~~Ls~~-~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~ 326 (408)
|.+|+.. +.++..+++.|+++.|+.++.++ +..+++.|+++|.+|+..
T Consensus 194 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~---------------------~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 194 LANIASGPTSAIKAIVDAGGVEVLQKLLTST---------------------DSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS---------------------CHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC---------------------cHHHHHHHHHHHHHHHcC
Confidence 9999984 55777888999999999999864 789999999999999864
No 38
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.84 E-value=2.3e-21 Score=147.17 Aligned_cols=75 Identities=47% Similarity=0.939 Sum_probs=70.6
Q ss_pred CCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338 7 YITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ 81 (408)
Q Consensus 7 ~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~ 81 (408)
+.+++++|.||||+++|.|||+++|||+||+.||.+|+..+..+||.|++++...++.||..++++|++|.++++
T Consensus 2 ~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~ 76 (78)
T 1t1h_A 2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNG 76 (78)
T ss_dssp CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSC
T ss_pred CcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcC
Confidence 456899999999999999999999999999999999998777889999999998999999999999999999876
No 39
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.83 E-value=2.5e-21 Score=168.39 Aligned_cols=76 Identities=24% Similarity=0.442 Sum_probs=70.5
Q ss_pred cCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338 6 LYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ 81 (408)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~ 81 (408)
....+|++|+||||+++|+|||+++|||+|||.||++||..+..+||.|+++++..+++||..|++.|+.|+..++
T Consensus 99 ~~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~ 174 (179)
T 2f42_A 99 KKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENG 174 (179)
T ss_dssp GCCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCT
T ss_pred cccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCC
Confidence 3567899999999999999999999999999999999998754479999999998999999999999999999886
No 40
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.83 E-value=3e-19 Score=191.69 Aligned_cols=260 Identities=10% Similarity=0.151 Sum_probs=211.8
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
.+.++.|++.|.+.+.. |..|+..|..++.. ..++..+.+.+|+|+.|+.+|.+..+..+++.|+.+|.+|+. .++
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~-~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~--~~~ 225 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSH--HRE 225 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTS-HHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT--SHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCC-ChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC--Cch
Confidence 45688999999988877 99999999999875 567777775548999999999876434455999999999987 444
Q ss_pred HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-chhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-DSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS 256 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~ 256 (408)
+ +..+. +.|+|+.|+.+|+++ +..+|..|+++|.+|+.+. +.+..+.. .|+++.|+++|+++ +..+++.++.
T Consensus 226 ~--~~~i~--~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~v~~-~g~v~~Lv~lL~~~-~~~v~~~a~~ 298 (780)
T 2z6g_A 226 G--LLAIF--KSGGIPALVNMLGSP-VDSVLFHAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKT-NVKFLAITTD 298 (780)
T ss_dssp H--HHHHH--HTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGCC-CHHHHHHHHH
T ss_pred h--HHHHH--HcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHH-cCCHHHHHHHHhcC-CHHHHHHHHH
Confidence 4 56666 789999999999999 9999999999999999875 55666655 89999999999986 8899999999
Q ss_pred HHHHhcc-CcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHh
Q 036338 257 CLITISS-SKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQ 335 (408)
Q Consensus 257 aL~~Ls~-~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~ 335 (408)
+|.+|+. +.+++..+++.|+++.|+.+|++. ......+.++.+|.+|+.+++++..++.
T Consensus 299 aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~--------------------~~~~~~~~a~~aL~~Ls~~~~~~~~i~~ 358 (780)
T 2z6g_A 299 CLQILAYGNQESKLIILASGGPQALVNIMRTY--------------------TYEKLLWTTSRVLKVLSVCSSNKPAIVE 358 (780)
T ss_dssp HHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTC--------------------CCHHHHHHHHHHHHHHHTSTTHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC--------------------CHHHHHHHHHHHHHHhhcChHHHHHHHH
Confidence 9999997 467999999999999999999863 2456778899999999999999988887
Q ss_pred hcCchHHHHHHHH--------------------------------------H----------------------HHHHHH
Q 036338 336 DAALLNGVVQKML--------------------------------------K----------------------TAQEAV 355 (408)
Q Consensus 336 ~~g~i~~lv~~l~--------------------------------------~----------------------~~~~~~ 355 (408)
. |+++.|+.+|. + +.++.+
T Consensus 359 ~-g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i 437 (780)
T 2z6g_A 359 A-GGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMV 437 (780)
T ss_dssp T-THHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred h-chHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4 77776654321 0 345556
Q ss_pred HhcCcHHHHHHHHhhcC-CHHHHHHHHHHHHHHhh
Q 036338 356 SSSNVLTKILLLMQSNC-TPAVRQMSADLLKIFRV 389 (408)
Q Consensus 356 ~~~g~~~~Ll~ll~~~~-~~~~k~~A~~lL~~l~~ 389 (408)
++.|+++.|+.+|.... .+.+++.|..+|..|..
T Consensus 438 ~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~ 472 (780)
T 2z6g_A 438 CQVGGIEALVRTVLRAGDREDITEPAICALRHLTS 472 (780)
T ss_dssp HTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 67899999999997643 34789999888887764
No 41
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.3e-20 Score=146.69 Aligned_cols=73 Identities=27% Similarity=0.520 Sum_probs=64.9
Q ss_pred CCCCcccccCccccCCCceecC-CCCcccHhhHHHHHhcC-----CCCCCC--cccc-cCCCCCcccHHHHHHHHHHHHh
Q 036338 9 TVPSFFRCPISLDVMKSPVSLC-TGVTYDRASIQRWLDSG-----NNTCPA--TMQV-LQSKEFVPNRTLQRLIQIWSDS 79 (408)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~~-cgh~f~r~cI~~~~~~~-----~~~CP~--~~~~-l~~~~l~~n~~l~~~I~~~~~~ 79 (408)
..+++|+||||+++|+|||+++ |||+|||.||++||..+ ..+||+ |+.. +...+++||..|++.|+.|+++
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~ 82 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK 82 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence 4578999999999999999996 99999999999999763 468999 5544 8888999999999999999988
Q ss_pred cC
Q 036338 80 VQ 81 (408)
Q Consensus 80 ~~ 81 (408)
+.
T Consensus 83 ~~ 84 (94)
T 2yu4_A 83 RH 84 (94)
T ss_dssp CC
T ss_pred hc
Confidence 76
No 42
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.79 E-value=8.3e-20 Score=172.38 Aligned_cols=77 Identities=23% Similarity=0.443 Sum_probs=71.2
Q ss_pred CcCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338 5 DLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ 81 (408)
Q Consensus 5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~ 81 (408)
....++|++|+||||+++|+|||+++|||||||.||++||..+..+||.|+++++..+++||..+++.|++|+..++
T Consensus 200 ~~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~ 276 (281)
T 2c2l_A 200 RKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENG 276 (281)
T ss_dssp TSCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCS
T ss_pred ccCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCC
Confidence 34567899999999999999999999999999999999998766669999999998899999999999999998876
No 43
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.76 E-value=2.9e-17 Score=156.06 Aligned_cols=207 Identities=11% Similarity=0.080 Sum_probs=158.3
Q ss_pred HHHHHHHHH-HHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338 99 QDEVKDIIR-VAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED 176 (408)
Q Consensus 99 ~~~i~~Lv~-~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~ 176 (408)
.+.++.|+. .|.+++++ |..|++.|.+++.+++.++..+++. |++|+|+.+|+++.+..+++.|+++|.||+. +.
T Consensus 80 ~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~-g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~--~~ 156 (296)
T 1xqr_A 80 LSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL-GALRKLLRLLDRDACDTVRVKALFAISCLVR--EQ 156 (296)
T ss_dssp TTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHHCSCHHHHHHHHHHHHHHHT--TC
T ss_pred cCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC-CCHHHHHHHHccCCCHHHHHHHHHHHHHHHc--CC
Confidence 356789999 99998888 9999999999999999999999999 9999999999975434456999999999987 44
Q ss_pred hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHH
Q 036338 177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD-ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASL 255 (408)
Q Consensus 177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~ 255 (408)
.+. .+.+. +.|+++.|+.+|+++ +..+|..|+++|.+|+.. ++.+..+.+ .|++++|+.+|+++ ++.+++.|+
T Consensus 157 ~~~-~~~~~--~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv~-~g~i~~Lv~LL~~~-d~~v~~~al 230 (296)
T 1xqr_A 157 EAG-LLQFL--RLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCS-MGMVQQLVALVRTE-HSPFHEHVL 230 (296)
T ss_dssp HHH-HHHHH--HTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHH-TTHHHHHHHHHTSC-CSTHHHHHH
T ss_pred cHH-HHHHH--HCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHHH-cCCHHHHHHHHcCC-ChhHHHHHH
Confidence 443 44555 789999999999999 999999999999999875 567788877 89999999999997 889999999
Q ss_pred HHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCH
Q 036338 256 SCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTK 327 (408)
Q Consensus 256 ~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~ 327 (408)
++|.+|.............+. +.|..+|.+.. ...+.......+.++|..++.++-..+
T Consensus 231 ~aL~~l~~~~~~~~~~~~~~~-~~l~~lL~~~~------------~~lq~~e~~~e~~~~~~~il~~~f~~~ 289 (296)
T 1xqr_A 231 GALCSLVTDFPQGVRECREPE-LGLEELLRHRC------------QLLQQHEEYQEELEFCEKLLQTCFSSP 289 (296)
T ss_dssp HHHHHHHTTCHHHHHHHHCGG-GCHHHHHHHHH------------HHHTTCGGGHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHhCChhHHHHHhccH-HHHHHHHHHHH------------HHccchHHHHHHHHHHHHHHHHHcCCC
Confidence 999999987443322222221 22333332200 000000124577788888888887543
No 44
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.7e-17 Score=171.72 Aligned_cols=261 Identities=13% Similarity=0.111 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHhc-CChh-HHHHHHHHHHHhhhCh--------------------------------------hhhhhhh
Q 036338 99 QDEVKDIIRVAIS-KNED-FSENLTKIVAFAKESD--------------------------------------ENKTFLA 138 (408)
Q Consensus 99 ~~~i~~Lv~~L~s-~~~~-~~~Al~~L~~la~~~~--------------------------------------~~r~~i~ 138 (408)
+..+..|++.++. .+.. .-.++..|.+++...+ .++..+.
T Consensus 375 ~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~ 454 (778)
T 3opb_A 375 ESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYIL 454 (778)
T ss_dssp HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHH
Confidence 5567888888885 4444 5566666666654211 1577889
Q ss_pred hcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChH---HHHHHHHHH
Q 036338 139 KFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVD---SRIESLRLL 215 (408)
Q Consensus 139 ~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~---~~~~Aa~~L 215 (408)
+. |+||.|+.++++.+ ...++.|+++|.+|+. ...+ |..++ +.|++++|+.+|.++ +.. .|..|+.+|
T Consensus 455 ea-GvIp~Lv~Ll~S~s-~~~re~A~~aL~nLS~--d~~~--R~~lv--qqGal~~LL~lL~s~-~~~~~~~k~~AA~AL 525 (778)
T 3opb_A 455 RT-ELISFLKREMHNLS-PNCKQQVVRIIYNITR--SKNF--IPQLA--QQGAVKIILEYLANK-QDIGEPIRILGCRAL 525 (778)
T ss_dssp TT-THHHHHHHHGGGSC-HHHHHHHHHHHHHHHT--SGGG--HHHHH--HTTHHHHHHHHTTCC----CCHHHHHHHHHH
T ss_pred HC-cCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC--CHHH--HHHHH--HCCCHHHHHHHHhcC-CCcchHHHHHHHHHH
Confidence 99 99999999999877 3344999999999986 4443 77777 899999999999988 544 799999999
Q ss_pred HHhhcCcchhhHHh--hhcChHHHHHHhcccCCCH-------------HHHHHHHHHHHHhccCcc-----hHHHHHhc-
Q 036338 216 EFIAGDADSKVKIA--ERDGLLAETVKSLSLDSDR-------------RLIEASLSCLITISSSKR-----AKTKLINH- 274 (408)
Q Consensus 216 ~~La~~~~~~~~i~--~~~g~i~~Lv~lL~~~~~~-------------~~~~~A~~aL~~Ls~~~~-----n~~~~~~~- 274 (408)
.+|+...+....+. ...|+|++|+.+|..+.+. ..+..|+.||.||++.++ .|..++++
T Consensus 526 ArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ 605 (778)
T 3opb_A 526 TRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTK 605 (778)
T ss_dssp HHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSH
T ss_pred HHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhc
Confidence 99997766555553 2248999999999831111 237789999999999873 48889985
Q ss_pred CcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHH-HHHHhhc-----CchHHHHHHHH
Q 036338 275 KLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGR-MEICQDA-----ALLNGVVQKML 348 (408)
Q Consensus 275 G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~-----g~i~~lv~~l~ 348 (408)
|+++.|..+|.+. +..++..|+.++.||+.+++++ +.+.... +.++.||.++.
T Consensus 606 ga~~~L~~LL~s~---------------------n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~ 664 (778)
T 3opb_A 606 VYWSTIENLMLDE---------------------NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQ 664 (778)
T ss_dssp HHHHHHHHGGGCS---------------------SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHhCC---------------------CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHc
Confidence 9999999999864 7799999999999999999886 3554321 23777887442
Q ss_pred H---------------------HHHHHHHhc-CcHHHHHHHHhhc-CCHHHHHHHHHHHHHHhh
Q 036338 349 K---------------------TAQEAVSSS-NVLTKILLLMQSN-CTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 349 ~---------------------~~~~~~~~~-g~~~~Ll~ll~~~-~~~~~k~~A~~lL~~l~~ 389 (408)
. .+.+.+++. +++..++.+++.. ..+..+..+..++..+..
T Consensus 665 s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 665 LSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 1 234555665 8999999999873 467789988888888886
No 45
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.75 E-value=5.7e-17 Score=169.30 Aligned_cols=275 Identities=11% Similarity=0.092 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc-
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED- 176 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~- 176 (408)
.+-+..+++.|...+.+ +..|++.|..++.+ +..|+.+++..|+++.|+.++++..+..+...++.+|.||+....+
T Consensus 333 ~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~ 411 (778)
T 3opb_A 333 KQLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEX 411 (778)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCC
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCccc
Confidence 34556677777776666 88999999999875 7889998877688999999998633334568999999999863110
Q ss_pred -------------------------h---------HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc
Q 036338 177 -------------------------Q---------QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA 222 (408)
Q Consensus 177 -------------------------~---------~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~ 222 (408)
+ +..+..+. ++|+|+.|+.++.++ +..+|+.|+++|.+|+.+.
T Consensus 412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~--eaGvIp~Lv~Ll~S~-s~~~re~A~~aL~nLS~d~ 488 (778)
T 3opb_A 412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYIL--RTELISFLKREMHNL-SPNCKQQVVRIIYNITRSK 488 (778)
T ss_dssp CCCCC------------------CCTHHHHHHHHHHHHHHHTT--TTTHHHHHHHHGGGS-CHHHHHHHHHHHHHHHTSG
T ss_pred chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHH--HCcCHHHHHHHHcCC-CHHHHHHHHHHHHHHcCCH
Confidence 0 00134565 899999999999999 9999999999999999999
Q ss_pred chhhHHhhhcChHHHHHHhcccCCCH--HHHHHHHHHHHHhccCcchHHHHH--h-cCcHHHHHHHhccCCCCCCCCCCC
Q 036338 223 DSKVKIAERDGLLAETVKSLSLDSDR--RLIEASLSCLITISSSKRAKTKLI--N-HKLITELGKLITDGHNGNGSGNGN 297 (408)
Q Consensus 223 ~~~~~i~~~~g~i~~Lv~lL~~~~~~--~~~~~A~~aL~~Ls~~~~n~~~~~--~-~G~i~~Lv~lL~~~~~~~~~~~~~ 297 (408)
++|..+.. .|++++|+.+|.++.+. .+++.|+.||.+|.........+- . .|+|++|+.||...+ ++.
T Consensus 489 ~~R~~lvq-qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~---~~~--- 561 (778)
T 3opb_A 489 NFIPQLAQ-QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRST---PVD--- 561 (778)
T ss_dssp GGHHHHHH-TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSS---SCS---
T ss_pred HHHHHHHH-CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCC---Ccc---
Confidence 99999998 89999999999987222 289999999999987655444332 1 499999999997310 000
Q ss_pred CCCCCCCCCCCC--c-chHHHHHHHHHHHhCCH-----HHHHHHHhhcCchHHHHHHHHH---HHHHHH-----------
Q 036338 298 GNGNGNGSGNGT--V-LITEKALRLVEILSTTK-----QGRMEICQDAALLNGVVQKMLK---TAQEAV----------- 355 (408)
Q Consensus 298 ~~~~~~~~~~~~--~-~~~~~a~~~L~~L~~~~-----~~~~~~~~~~g~i~~lv~~l~~---~~~~~~----------- 355 (408)
+ .-....+ + ..+..|+.+|.||+..+ +.|..++.+.|++|.|+++|.. .+++++
T Consensus 562 ---~-~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~ 637 (778)
T 3opb_A 562 ---D-NPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP 637 (778)
T ss_dssp ---S-CC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG
T ss_pred ---c-ccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc
Confidence 0 0000011 1 23779999999999865 4578888744899999997654 122211
Q ss_pred -------Hhc------CcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 356 -------SSS------NVLTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 356 -------~~~------g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
.+. +.+..|+.++++ .+..+|+.|..+|..+..
T Consensus 638 e~i~~k~~~~~~~~~~~rL~lLV~Ll~s-~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 638 LTIAAKFFNLENPQSLRNFNILVKLLQL-SDVESQRAVAAIFANIAT 683 (778)
T ss_dssp GGTGGGTSCCSSHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCchhhccHHHHHHHHcC-CCHHHHHHHHHHHHHhcC
Confidence 111 126677777765 567789999999998854
No 46
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.74 E-value=3.6e-18 Score=133.71 Aligned_cols=77 Identities=21% Similarity=0.339 Sum_probs=68.6
Q ss_pred CcCCCCCCcccccCccccCCCceecC-CCCcccHhhHHHHHhc-CCCCCCCccccc-CCCCCcccHHHHHHHHHHHHhcC
Q 036338 5 DLYITVPSFFRCPISLDVMKSPVSLC-TGVTYDRASIQRWLDS-GNNTCPATMQVL-QSKEFVPNRTLQRLIQIWSDSVQ 81 (408)
Q Consensus 5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~-cgh~f~r~cI~~~~~~-~~~~CP~~~~~l-~~~~l~~n~~l~~~I~~~~~~~~ 81 (408)
.....+++++.||||.++|.|||+++ |||+||+.||.+||.. +...||.|++++ ...++.+|..++++|+.|...++
T Consensus 5 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 5 SEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp SSCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred cccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence 34557889999999999999999999 9999999999999975 347899999997 56789999999999999998765
No 47
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.66 E-value=5.2e-17 Score=134.35 Aligned_cols=70 Identities=17% Similarity=0.253 Sum_probs=63.7
Q ss_pred CCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC-CCCcccHHHHHHHHHHHHh
Q 036338 10 VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS-KEFVPNRTLQRLIQIWSDS 79 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~-~~l~~n~~l~~~I~~~~~~ 79 (408)
+++++.||||.++|.+||+++|||+||+.||.+|+..+...||.|++++.. .++.+|..++.+++.|...
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence 456799999999999999999999999999999998666789999999987 7899999999999998754
No 48
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.64 E-value=8e-17 Score=146.39 Aligned_cols=71 Identities=23% Similarity=0.381 Sum_probs=64.2
Q ss_pred CCCCcccccCccccCCCceec-CCCCcccHhhHHHHHhcC-CCCCCC--cccccCCCCCcccHHHHHHHHHHHHh
Q 036338 9 TVPSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSG-NNTCPA--TMQVLQSKEFVPNRTLQRLIQIWSDS 79 (408)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~-~~~CP~--~~~~l~~~~l~~n~~l~~~I~~~~~~ 79 (408)
....+|+||||+++|+|||++ .|||+|||.||.+||..+ ...||+ |++.+...+|+||..|+++|+.|..+
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence 356789999999999999985 899999999999999863 467999 99999999999999999999999775
No 49
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.63 E-value=5.3e-17 Score=116.26 Aligned_cols=54 Identities=20% Similarity=0.329 Sum_probs=49.2
Q ss_pred cccccCccccCCCceec-CCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccH
Q 036338 13 FFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNR 67 (408)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~ 67 (408)
.|.||||+++|+|||++ +|||+|||+||++|+..+ .+||.|++++...+++||+
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChhhcEECc
Confidence 58999999999999999 899999999999999864 4699999999999999875
No 50
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.62 E-value=2.2e-16 Score=134.68 Aligned_cols=69 Identities=22% Similarity=0.350 Sum_probs=63.4
Q ss_pred CCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCC-CCcccHHHHHHHHHHHH
Q 036338 10 VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSK-EFVPNRTLQRLIQIWSD 78 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~-~l~~n~~l~~~I~~~~~ 78 (408)
+++++.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++... .+.+|..++.+++.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 4577999999999999999999999999999999997667899999999887 89999999999998874
No 51
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.61 E-value=1.7e-16 Score=129.40 Aligned_cols=78 Identities=22% Similarity=0.265 Sum_probs=67.1
Q ss_pred CCCCCcCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC-------CCCcccHHHHHHH
Q 036338 1 MVRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS-------KEFVPNRTLQRLI 73 (408)
Q Consensus 1 ~~~~~~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~-------~~l~~n~~l~~~I 73 (408)
|+.........+++.||||.++|.+||+++|||+||+.||.+|+..+...||.|++++.. .++..|..+...|
T Consensus 3 m~~~~~~~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i 82 (115)
T 3l11_A 3 MALPKDAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTII 82 (115)
T ss_dssp CCCCTTCCCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHH
T ss_pred CcccccccCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHH
Confidence 555556666778899999999999999999999999999999998767889999998763 5677889999999
Q ss_pred HHHHH
Q 036338 74 QIWSD 78 (408)
Q Consensus 74 ~~~~~ 78 (408)
++|..
T Consensus 83 ~~~~p 87 (115)
T 3l11_A 83 QKHYP 87 (115)
T ss_dssp HHHSH
T ss_pred HHHCC
Confidence 88863
No 52
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.59 E-value=5.6e-17 Score=123.05 Aligned_cols=67 Identities=24% Similarity=0.348 Sum_probs=58.4
Q ss_pred CcCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcC------CCCCCCcccccCCCCCcccHHHHH
Q 036338 5 DLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSG------NNTCPATMQVLQSKEFVPNRTLQR 71 (408)
Q Consensus 5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~------~~~CP~~~~~l~~~~l~~n~~l~~ 71 (408)
.....+.+++.||||.+.|.+||+++|||+||+.||.+|+... ...||.|++++...++.+|..+++
T Consensus 4 ~~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~ 76 (79)
T 2egp_A 4 GSSGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN 76 (79)
T ss_dssp SSSCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred chHhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence 3455788899999999999999999999999999999999863 568999999998888888876654
No 53
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.1e-15 Score=121.25 Aligned_cols=71 Identities=17% Similarity=0.393 Sum_probs=64.1
Q ss_pred CCCcccccCccccCCCceec-CCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338 10 VPSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ 81 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~ 81 (408)
+++++.||||.+.|.+||++ +|||+||+.||.+|+.. ...||.|+.++...++.+|..++++++.|.....
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFARN 90 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHH
Confidence 34678999999999999998 89999999999999984 5689999999988889999999999999987654
No 54
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.58 E-value=1e-15 Score=121.54 Aligned_cols=71 Identities=23% Similarity=0.360 Sum_probs=63.2
Q ss_pred CCCcccccCccccCCCcee-cCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhc
Q 036338 10 VPSFFRCPISLDVMKSPVS-LCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSV 80 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~dPv~-~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~ 80 (408)
+.+++.||||+++|.+||+ ++|||+||+.||.+|+......||.|+.++...++.+|..+..+++......
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 4577999999999999999 8999999999999999976578999999998889999998888877776554
No 55
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.57 E-value=4.5e-16 Score=119.58 Aligned_cols=67 Identities=24% Similarity=0.409 Sum_probs=58.1
Q ss_pred cCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcC-----CCCCCCcccccCCCCCcccHHHHHH
Q 036338 6 LYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSG-----NNTCPATMQVLQSKEFVPNRTLQRL 72 (408)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~-----~~~CP~~~~~l~~~~l~~n~~l~~~ 72 (408)
....+.+++.||||.+.|.+|++++|||+||+.||.+|+... ...||.|++++...++.+|..++++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred HHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 344678899999999999999999999999999999999862 5689999999988889888766543
No 56
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=6.3e-16 Score=118.73 Aligned_cols=66 Identities=26% Similarity=0.543 Sum_probs=57.6
Q ss_pred cCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhc-----CCCCCCCcccccCCCCCcccHHHHH
Q 036338 6 LYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDS-----GNNTCPATMQVLQSKEFVPNRTLQR 71 (408)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~-----~~~~CP~~~~~l~~~~l~~n~~l~~ 71 (408)
....+.+++.||||.+.|.+|++++|||+||+.||.+|+.. +...||.|++++...++.+|..+++
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~ 82 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred HHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence 34567888999999999999999999999999999999975 3568999999998888888876654
No 57
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=4.3e-15 Score=110.73 Aligned_cols=62 Identities=19% Similarity=0.401 Sum_probs=52.3
Q ss_pred CCCCcCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhc--CCCCCCCcccccCCCCC
Q 036338 2 VRDDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDS--GNNTCPATMQVLQSKEF 63 (408)
Q Consensus 2 ~~~~~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~--~~~~CP~~~~~l~~~~l 63 (408)
+.......+.+++.||||.+.|.+||+++|||+||+.||.+|+.. +...||.|++++...++
T Consensus 9 ~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 9 ASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred ccHHHHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 334445567889999999999999999999999999999999974 45689999998876554
No 58
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.55 E-value=5.6e-15 Score=110.50 Aligned_cols=61 Identities=25% Similarity=0.301 Sum_probs=51.2
Q ss_pred cCCCCCCcccccCccccCCCceecC-CCCcccHhhHHHHHhcC-CCCCCCcccccCC-CCCccc
Q 036338 6 LYITVPSFFRCPISLDVMKSPVSLC-TGVTYDRASIQRWLDSG-NNTCPATMQVLQS-KEFVPN 66 (408)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dPv~~~-cgh~f~r~cI~~~~~~~-~~~CP~~~~~l~~-~~l~~n 66 (408)
....+++++.||||.++|.+||+++ |||+||+.||.+|+... ...||.|++++.. +.+.+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 4456889999999999999999999 99999999999999863 4689999997544 345555
No 59
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.55 E-value=5.9e-13 Score=135.93 Aligned_cols=262 Identities=13% Similarity=0.170 Sum_probs=205.0
Q ss_pred HHHHHHHHHHHhcCC-hh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhccccc
Q 036338 99 QDEVKDIIRVAISKN-ED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIE 175 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~-~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~ 175 (408)
.+.|+.|..+++++. .+ |..|+..|+.++++ ++..+.. ++++.|+..|+... |......++.+|.++.....
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg~--~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~ 94 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVGI--QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE 94 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHHH--HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhhh--hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 678999999998875 34 99999999999764 5556654 78999999998876 67777889999988654211
Q ss_pred chH---------------HHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc-c-hhhHHhhhcChHHHH
Q 036338 176 DQQ---------------HLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA-D-SKVKIAERDGLLAET 238 (408)
Q Consensus 176 ~~~---------------~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~-~-~~~~i~~~~g~i~~L 238 (408)
+++ ....++. +.+.|+.|+.+|++. +..+|.++..+|..|+.+. + ..+.|....++|+.|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~d~f~~--~~~~i~~Ll~lL~~~-df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~L 171 (651)
T 3grl_A 95 EEEVEENSTRQSEDLGSQFTEIFIK--QQENVTLLLSLLEEF-DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRL 171 (651)
T ss_dssp -------------CHHHHHHHHHHH--STHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHH
T ss_pred cccccccccccchHHHHHHHHHHHc--CCccHHHHHHHhcCc-cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHH
Confidence 111 0112344 789999999999998 9999999999999998764 3 678888657999999
Q ss_pred HHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Q 036338 239 VKSLSLDSDRRLIEASLSCLITISSSKRAKTKLIN-HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKAL 317 (408)
Q Consensus 239 v~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 317 (408)
|.+|++. ...+|..|+..|.+|+.+..+.++++. +|+++.|+.++.+. |. .....+++.++
T Consensus 172 v~lL~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~E----g~-------------~~Ggivv~DCL 233 (651)
T 3grl_A 172 MDLLADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEE----GN-------------SDGGIVVEDCL 233 (651)
T ss_dssp HGGGGCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHH----TG-------------GGSHHHHHHHH
T ss_pred HHHHhCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhc----CC-------------CccchhHHHHH
Confidence 9999986 778999999999999999998888886 59999999999874 00 12348899999
Q ss_pred HHHHHHhC-CHHHHHHHHhhcCchHHHHHHHH--------------H----------------------HHHHHHHhcCc
Q 036338 318 RLVEILST-TKQGRMEICQDAALLNGVVQKML--------------K----------------------TAQEAVSSSNV 360 (408)
Q Consensus 318 ~~L~~L~~-~~~~~~~~~~~~g~i~~lv~~l~--------------~----------------------~~~~~~~~~g~ 360 (408)
.+|.+|.+ ++.|+..|.+. ++++.|..+|. + ..+..+.+.|+
T Consensus 234 ~ll~nLLr~N~sNQ~~FrEt-~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~ 312 (651)
T 3grl_A 234 ILLQNLLKNNNSNQNFFKEG-SYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGL 312 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHT-TCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHhcCHHHHHHHHHc-CCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCC
Confidence 99999997 57798888875 88888776431 1 45677889999
Q ss_pred HHHHHHHHhhcC-CHHHHHHHHHHHHHH
Q 036338 361 LTKILLLMQSNC-TPAVRQMSADLLKIF 387 (408)
Q Consensus 361 ~~~Ll~ll~~~~-~~~~k~~A~~lL~~l 387 (408)
+..|+.++.+.+ ...+|..|...+.-+
T Consensus 313 l~~Ll~ll~~~~~p~~i~~~Al~tla~~ 340 (651)
T 3grl_A 313 LQQLCTILMATGVPADILTETINTVSEV 340 (651)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 999999987654 455676665555433
No 60
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=4.7e-15 Score=108.31 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=50.4
Q ss_pred CCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCC
Q 036338 7 YITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEF 63 (408)
Q Consensus 7 ~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l 63 (408)
...+++++.||||.+.|++||+++|||+||+.||.+|+..+...||.|++++...++
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 345778899999999999999999999999999999997667789999998876554
No 61
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.55 E-value=1.4e-15 Score=124.36 Aligned_cols=69 Identities=19% Similarity=0.393 Sum_probs=62.9
Q ss_pred CCCcccccCccccCCCceec-CCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338 10 VPSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ 81 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~ 81 (408)
+.+++.||||.++|.+||++ +|||+||+.||.+|+. ..||.|+.++...++.+|..++.+++.+.....
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~~ 88 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLRN 88 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHHH
Confidence 46789999999999999999 9999999999999997 579999999988899999999999998876543
No 62
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.55 E-value=2.6e-15 Score=121.00 Aligned_cols=69 Identities=13% Similarity=0.283 Sum_probs=61.1
Q ss_pred CCCCcccccCccccCCCceec-CCCCcccHhhHHHHHhcCCCCCCCcccccCCC----CCcccHHHHHHHHHHHH
Q 036338 9 TVPSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQSK----EFVPNRTLQRLIQIWSD 78 (408)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~----~l~~n~~l~~~I~~~~~ 78 (408)
.+++++.||||.++|.+||++ +|||+||+.||.+|+.. ...||.|+..+... .+.+|..+..+++.|..
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 467889999999999999998 99999999999999985 46799999998765 67889999999888764
No 63
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.2e-15 Score=113.87 Aligned_cols=65 Identities=17% Similarity=0.138 Sum_probs=54.6
Q ss_pred cCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHH
Q 036338 6 LYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRL 72 (408)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~ 72 (408)
...+..+.+.||||.+.|.+||+++|||+||+.||.+|+.. ...||.|++++. ..+.+|..+...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~~ 72 (81)
T 2csy_A 8 GSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMAK 72 (81)
T ss_dssp CSSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHHH
T ss_pred CcccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHHH
Confidence 33456778999999999999999999999999999999975 567999999986 667788655443
No 64
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.53 E-value=3.1e-15 Score=122.49 Aligned_cols=70 Identities=21% Similarity=0.420 Sum_probs=63.2
Q ss_pred CCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHH
Q 036338 8 ITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWS 77 (408)
Q Consensus 8 ~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~ 77 (408)
..+++++.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++...++.+|..+++.|.++.
T Consensus 13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM 82 (118)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccce
Confidence 4678889999999999999999999999999999999876668999999998888999999988887654
No 65
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=108.27 Aligned_cols=60 Identities=15% Similarity=0.268 Sum_probs=52.7
Q ss_pred cCCCCCCcccccCccccCCCceec-CCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCccc
Q 036338 6 LYITVPSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPN 66 (408)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n 66 (408)
...++.+++.||||++.|.+||++ +|||+||+.||.+|+.. ...||.|++++...++.+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence 445678899999999999999998 99999999999999975 5689999999988777665
No 66
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.1e-14 Score=105.20 Aligned_cols=51 Identities=24% Similarity=0.470 Sum_probs=44.3
Q ss_pred CCcCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhc--CCCCCCCc
Q 036338 4 DDLYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDS--GNNTCPAT 54 (408)
Q Consensus 4 ~~~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~--~~~~CP~~ 54 (408)
......+.+++.||||.+.|.+||+++|||+||+.||.+|+.. +...||.|
T Consensus 11 ~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 11 GQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3344567889999999999999999999999999999999985 45679987
No 67
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.51 E-value=4.3e-15 Score=129.01 Aligned_cols=71 Identities=28% Similarity=0.423 Sum_probs=61.9
Q ss_pred CCCCcccccCccccCCCceec-CCCCcccHhhHHHHHhcCCCCCCCcccccCC-CCCcccHHHHHHHHHHHHh
Q 036338 9 TVPSFFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQS-KEFVPNRTLQRLIQIWSDS 79 (408)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~-~~l~~n~~l~~~I~~~~~~ 79 (408)
.+.+++.||||.+.|.+||++ +|||+||+.||.+|+..+...||.|+.++.. ..+.+|..++++|..|...
T Consensus 50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence 345678999999999999998 9999999999999999777889999999854 5689999999999988654
No 68
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.50 E-value=1.1e-14 Score=153.84 Aligned_cols=74 Identities=30% Similarity=0.436 Sum_probs=69.3
Q ss_pred CCCCCCcccccCccccCCCceecCCC-CcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHHHhcC
Q 036338 7 YITVPSFFRCPISLDVMKSPVSLCTG-VTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWSDSVQ 81 (408)
Q Consensus 7 ~~~~~~~~~Cpi~~~~~~dPv~~~cg-h~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~~~~ 81 (408)
..++|++|.|||++++|+|||++++| +||+|++|++|+.. +.+||.|+++++..+++||++||+.|++|+.++.
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~ 959 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKK 959 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHH
Confidence 46899999999999999999999998 69999999999986 5689999999999999999999999999998875
No 69
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.50 E-value=8.1e-15 Score=118.77 Aligned_cols=69 Identities=17% Similarity=0.420 Sum_probs=59.1
Q ss_pred CCCcccccCccccCCCceecCCCCcccHhhHHHHHhcC--CCCCCCcccccCCCCCcccHHHHHHHHHHHH
Q 036338 10 VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSG--NNTCPATMQVLQSKEFVPNRTLQRLIQIWSD 78 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~--~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~~ 78 (408)
+.+.+.||||.+.|.+||+++|||+||+.||.+|+... ...||.|+.++...++.+|..+...++.+..
T Consensus 18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 34578999999999999999999999999999999853 3589999999998889888777666666654
No 70
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.47 E-value=1.8e-14 Score=121.32 Aligned_cols=64 Identities=19% Similarity=0.331 Sum_probs=51.7
Q ss_pred CCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHHH
Q 036338 11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIWS 77 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~~ 77 (408)
.+++.||||.+.|.|||+++|||+||+.||.+|+.. ...||.|++++... .+|..+...|..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK--TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE--EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC--CCccchhHHHHHHH
Confidence 456899999999999999999999999999999985 56799999987543 24555555555554
No 71
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.47 E-value=1e-14 Score=118.96 Aligned_cols=68 Identities=16% Similarity=0.293 Sum_probs=56.5
Q ss_pred CCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCc-ccHHHHHHHHHH
Q 036338 9 TVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFV-PNRTLQRLIQIW 76 (408)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~-~n~~l~~~I~~~ 76 (408)
++++++.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++...++. ++..+.+.+.++
T Consensus 19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence 35567899999999999999999999999999999987667899999998877764 455666655443
No 72
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.46 E-value=2.7e-14 Score=103.93 Aligned_cols=55 Identities=18% Similarity=0.304 Sum_probs=49.1
Q ss_pred CcccccCccc-cCCCc----eecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCccc
Q 036338 12 SFFRCPISLD-VMKSP----VSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPN 66 (408)
Q Consensus 12 ~~~~Cpi~~~-~~~dP----v~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n 66 (408)
+++.||||.+ +|.+| ++++|||+||+.||.+|+..+...||.|+.++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 5688999999 99999 5789999999999999998777789999999988887765
No 73
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.46 E-value=1.1e-14 Score=122.62 Aligned_cols=67 Identities=18% Similarity=0.335 Sum_probs=56.3
Q ss_pred CCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC---------CCCcccHHHHHHHHH
Q 036338 9 TVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS---------KEFVPNRTLQRLIQI 75 (408)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~---------~~l~~n~~l~~~I~~ 75 (408)
.++++|.||||+++|++||+++|||+||+.||.+|+..+...||.|+.++.. ..+.++..+++.|.+
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 4678899999999999999999999999999999998777789999986432 245588777777653
No 74
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.43 E-value=5.1e-14 Score=122.83 Aligned_cols=69 Identities=22% Similarity=0.433 Sum_probs=62.1
Q ss_pred CCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHHHHHHHHH
Q 036338 8 ITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTLQRLIQIW 76 (408)
Q Consensus 8 ~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~I~~~ 76 (408)
..++++|.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++...++.+|..+++.|.++
T Consensus 13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l 81 (170)
T 3hcs_A 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL 81 (170)
T ss_dssp SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence 357889999999999999999999999999999999987666899999999888899999888877654
No 75
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.6e-13 Score=96.15 Aligned_cols=49 Identities=24% Similarity=0.550 Sum_probs=43.3
Q ss_pred cCCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhc--CCCCCCCc
Q 036338 6 LYITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDS--GNNTCPAT 54 (408)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~--~~~~CP~~ 54 (408)
....+.+++.||||.+.|++||+++|||+||+.||.+|+.. ....||.|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 8 ALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred HhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 44467788999999999999999999999999999999875 45789987
No 76
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=3.7e-13 Score=103.92 Aligned_cols=56 Identities=21% Similarity=0.415 Sum_probs=49.0
Q ss_pred cCCCCCCcccccCccccCCC----ceecCCCCcccHhhHHHHHhcC--CCCCCCcccccCCC
Q 036338 6 LYITVPSFFRCPISLDVMKS----PVSLCTGVTYDRASIQRWLDSG--NNTCPATMQVLQSK 61 (408)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~d----Pv~~~cgh~f~r~cI~~~~~~~--~~~CP~~~~~l~~~ 61 (408)
....+.+.+.||||.+.|.+ |++++|||+||+.||.+|+... ...||.|++++...
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 44567888999999999999 9999999999999999999864 46899999987654
No 77
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.38 E-value=1.2e-13 Score=102.22 Aligned_cols=58 Identities=24% Similarity=0.439 Sum_probs=50.7
Q ss_pred CCCCCcccccCccccCCCc-------eecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCccc
Q 036338 8 ITVPSFFRCPISLDVMKSP-------VSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPN 66 (408)
Q Consensus 8 ~~~~~~~~Cpi~~~~~~dP-------v~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n 66 (408)
....+++.||||.+.|.+| ++++|||+||+.||.+|+... ..||.|++++...++.++
T Consensus 5 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp -CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCccChhheeec
Confidence 4556789999999999999 889999999999999999854 589999999988877765
No 78
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.36 E-value=5.6e-13 Score=100.22 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=48.0
Q ss_pred CCCCCCcccccCccccC--CCceecC--CCCcccHhhHHHHHhcCCCCCCCcccccCCCCC
Q 036338 7 YITVPSFFRCPISLDVM--KSPVSLC--TGVTYDRASIQRWLDSGNNTCPATMQVLQSKEF 63 (408)
Q Consensus 7 ~~~~~~~~~Cpi~~~~~--~dPv~~~--cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l 63 (408)
...+.+++.||||.+.| .||++.+ |||+||+.||.+||..+...||.||+++....+
T Consensus 5 ~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp SCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 34567889999999999 4677766 999999999999998777889999999876544
No 79
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=3.6e-13 Score=99.70 Aligned_cols=51 Identities=18% Similarity=0.172 Sum_probs=45.2
Q ss_pred CCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 9 TVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
...+++.||||++.|.+||+++|||+||+.||.+|+.. ...||.|++++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 44577899999999999999999999999999999985 4679999988754
No 80
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=7.7e-13 Score=97.13 Aligned_cols=54 Identities=22% Similarity=0.363 Sum_probs=47.2
Q ss_pred cCCCCCCcccccCccccCCCc-------eecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 6 LYITVPSFFRCPISLDVMKSP-------VSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dP-------v~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
....+++.+.||||++.|.+| ++++|||+||+.||.+|+.. ...||.|++++..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred cccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 445677889999999999998 88999999999999999986 5689999988753
No 81
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.30 E-value=2.4e-12 Score=97.07 Aligned_cols=60 Identities=20% Similarity=0.366 Sum_probs=49.8
Q ss_pred cCCCCCCcccccCccccCCCc---eecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCccc
Q 036338 6 LYITVPSFFRCPISLDVMKSP---VSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPN 66 (408)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dP---v~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n 66 (408)
......+++.||||++.|.+| ++++|||.||+.||.+|+.. ..+||.|++++...++.+|
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 8 TEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp CCTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred CcccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence 344566789999999999987 45699999999999999985 4689999999887776654
No 82
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.29 E-value=5.3e-13 Score=96.48 Aligned_cols=54 Identities=26% Similarity=0.487 Sum_probs=47.7
Q ss_pred CcccccCccccCCCc-------eecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCccc
Q 036338 12 SFFRCPISLDVMKSP-------VSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPN 66 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dP-------v~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n 66 (408)
+++.||||.+.|.+| ++++|||+||+.||.+|+.. +..||.|++++...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence 467899999999998 88899999999999999986 5689999999887776654
No 83
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.27 E-value=2.2e-10 Score=117.01 Aligned_cols=224 Identities=9% Similarity=0.107 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChh-hhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDE-NKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED 176 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~-~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~ 176 (408)
++.|..|+..|.+.+-. |..+++.|..++..++. ++++|...+++|+.|+.+|++.. ..++.+|+..|.+|+. ++
T Consensus 121 ~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r-E~iRneallLL~~Lt~--~n 197 (651)
T 3grl_A 121 QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR-EVIRNDGVLLLQALTR--SN 197 (651)
T ss_dssp THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS-HHHHHHHHHHHHHHHT--TC
T ss_pred CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch-HHHHHHHHHHHHHHhc--CC
Confidence 67789999999988877 99999999999988777 99999988899999999999766 2244889999999997 44
Q ss_pred hHHHHHHHhccCcccHHHHHHHHhcCC---ChHHHHHHHHHHHHhhcCcc-hhhHHhhhcChHHHHHHhcccCCC-----
Q 036338 177 QQHLMNLILKRDQDCLNSLLLVLKQQE---SVDSRIESLRLLEFIAGDAD-SKVKIAERDGLLAETVKSLSLDSD----- 247 (408)
Q Consensus 177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~---~~~~~~~Aa~~L~~La~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~----- 247 (408)
.+ +++++. -.|+++.|+.+++..+ ...+...++.+|.+|...+. |+..+.+ .|+++.|..+|+.+.+
T Consensus 198 ~~-iQklVA--FEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrE-t~~i~~L~~LL~~~~~~~~W~ 273 (651)
T 3grl_A 198 GA-IQKIVA--FENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKE-GSYIQRMKPWFEVGDENSGWS 273 (651)
T ss_dssp HH-HHHHHH--HTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCGGGGGGGGCCCSCSSCCC
T ss_pred HH-HHHHHH--HhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHH-cCCHHHHHHHhCCCccccccH
Confidence 44 588887 7899999999998631 12567889999999998764 6666666 7999999999985422
Q ss_pred HHHHHH---HHHHHHHhccC-------cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Q 036338 248 RRLIEA---SLSCLITISSS-------KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKAL 317 (408)
Q Consensus 248 ~~~~~~---A~~aL~~Ls~~-------~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 317 (408)
.+...+ ++.+++-|... ..|...+.+.|+++.|+.++.++ .....++..|+
T Consensus 274 ~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~-------------------~~p~~i~~~Al 334 (651)
T 3grl_A 274 AQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMAT-------------------GVPADILTETI 334 (651)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCS-------------------SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccC-------------------CCCHHHHHHHH
Confidence 122333 56666666553 13788888999999999999864 34568889999
Q ss_pred HHHHHHhC-CHHHHHHHHhhc----CchHHHHHHHH
Q 036338 318 RLVEILST-TKQGRMEICQDA----ALLNGVVQKML 348 (408)
Q Consensus 318 ~~L~~L~~-~~~~~~~~~~~~----g~i~~lv~~l~ 348 (408)
.++..+.+ ++.++..+.... ...|.++.+|+
T Consensus 335 ~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~ 370 (651)
T 3grl_A 335 NTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLM 370 (651)
T ss_dssp HHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHH
Confidence 99999975 789999987631 13455666443
No 84
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.20 E-value=4.8e-12 Score=88.95 Aligned_cols=46 Identities=20% Similarity=0.194 Sum_probs=40.5
Q ss_pred CCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
.+++.||||.+.|.+|++++|||+||+.||.+| ...||.|++.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence 467899999999999999999999999999873 4579999988754
No 85
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=5.4e-12 Score=92.98 Aligned_cols=54 Identities=17% Similarity=0.325 Sum_probs=47.1
Q ss_pred CCCCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCC
Q 036338 7 YITVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKE 62 (408)
Q Consensus 7 ~~~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~ 62 (408)
...+.+.+.||||.+.+.+ ++++|||+||+.||.+|+. ....||.|++++...+
T Consensus 9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence 3456788999999999999 9999999999999999998 4678999999886543
No 86
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.6e-11 Score=91.41 Aligned_cols=56 Identities=16% Similarity=0.312 Sum_probs=47.0
Q ss_pred CCcCCCCCCcccccCccccCCCceec---CCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 4 DDLYITVPSFFRCPISLDVMKSPVSL---CTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 4 ~~~~~~~~~~~~Cpi~~~~~~dPv~~---~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
.....++.++..||||++.|.+|..+ +|||.||+.||.+|+... .+||.|++++..
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 6 SGKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCPLCNMPVLQ 64 (74)
T ss_dssp CSCCCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-SBCTTTCCBCSS
T ss_pred ccccccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-CcCCCcCccccc
Confidence 34455677889999999999988655 999999999999999864 489999998754
No 87
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.16 E-value=1.9e-11 Score=85.43 Aligned_cols=47 Identities=23% Similarity=0.381 Sum_probs=41.5
Q ss_pred CcccccCccccCCC----ceecCCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338 12 SFFRCPISLDVMKS----PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 12 ~~~~Cpi~~~~~~d----Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
++..||||.+.|.+ |++++|||.||+.||.+|+..+ ..||.|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 45789999999977 8888999999999999999865 78999998764
No 88
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.15 E-value=2.2e-11 Score=89.04 Aligned_cols=48 Identities=29% Similarity=0.466 Sum_probs=41.9
Q ss_pred CcccccCccccCCCc-eecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 12 SFFRCPISLDVMKSP-VSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dP-v~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
.+..||||.+.+.+| ++++|||+||+.||.+|+.. +..||.|+.++..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence 456899999999997 67899999999999999985 4689999988754
No 89
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.13 E-value=1.4e-11 Score=102.39 Aligned_cols=54 Identities=26% Similarity=0.479 Sum_probs=47.4
Q ss_pred CCcccccCccccCCCc-------eecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcc
Q 036338 11 PSFFRCPISLDVMKSP-------VSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVP 65 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dP-------v~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~ 65 (408)
++++.||||++.|.+| |+++|||+||+.||.+|+.. ...||.|++.+...++.+
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~ 65 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHP 65 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEE
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCccccccc
Confidence 5678999999999999 99999999999999999985 458999999987766544
No 90
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.11 E-value=7.6e-11 Score=86.45 Aligned_cols=53 Identities=17% Similarity=0.360 Sum_probs=43.9
Q ss_pred CCCCCCcccccCccccCC---CceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 7 YITVPSFFRCPISLDVMK---SPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 7 ~~~~~~~~~Cpi~~~~~~---dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
..+...+..||||.+.|. +|++++|||.||+.||.+|+.. +.+||.|+.++..
T Consensus 8 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 8 GTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp CCSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred cCcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 345567789999999985 4678899999999999999986 4469999988754
No 91
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.11 E-value=4.7e-11 Score=83.42 Aligned_cols=48 Identities=21% Similarity=0.457 Sum_probs=42.1
Q ss_pred CCCcccccCccccCCC---ceecC-CCCcccHhhHHHHHhcCCCCCCCccccc
Q 036338 10 VPSFFRCPISLDVMKS---PVSLC-TGVTYDRASIQRWLDSGNNTCPATMQVL 58 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~d---Pv~~~-cgh~f~r~cI~~~~~~~~~~CP~~~~~l 58 (408)
+.++..||||.+.|.+ +++++ |||.|++.||.+|+.. +.+||.|++++
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~ 53 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEe
Confidence 3567789999999999 88887 9999999999999985 56899999865
No 92
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.10 E-value=5.2e-11 Score=92.48 Aligned_cols=50 Identities=20% Similarity=0.418 Sum_probs=43.6
Q ss_pred CCCcccccCccccCCC---ceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 10 VPSFFRCPISLDVMKS---PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~d---Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
..++..||||++.|.+ +++++|||.||+.||.+|+.. +.+||.|+.++.+
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 4567889999999998 888999999999999999984 5689999988754
No 93
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=7.2e-11 Score=88.14 Aligned_cols=49 Identities=18% Similarity=0.348 Sum_probs=42.8
Q ss_pred CCcccccCccccCCCc---eecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 11 PSFFRCPISLDVMKSP---VSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dP---v~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
.++..||||++.|.+| ++++|||.||+.||.+|+.. +.+||.|++++.+
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 4567899999999998 77899999999999999986 4589999988754
No 94
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.05 E-value=1.2e-10 Score=94.26 Aligned_cols=50 Identities=10% Similarity=0.182 Sum_probs=42.3
Q ss_pred CCcccccCccccCCCce------------------ecCCCCcccHhhHHHHHhc----CCCCCCCcccccCC
Q 036338 11 PSFFRCPISLDVMKSPV------------------SLCTGVTYDRASIQRWLDS----GNNTCPATMQVLQS 60 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv------------------~~~cgh~f~r~cI~~~~~~----~~~~CP~~~~~l~~ 60 (408)
+.+..||||++.|.+|+ +++|||.||+.||.+|+.. ...+||.||..+..
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 45568999999999886 7899999999999999963 35689999988754
No 95
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.03 E-value=5.2e-11 Score=88.67 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=41.0
Q ss_pred CCCcccccCccccCCCceecCCCCc-ccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 10 VPSFFRCPISLDVMKSPVSLCTGVT-YDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~dPv~~~cgh~-f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
+.+++.|+||.+.+.+||+++|||+ ||+.|+.+| ..||.||+++..
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 3456899999999999999999999 999999998 569999988754
No 96
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.00 E-value=1.7e-08 Score=94.23 Aligned_cols=214 Identities=10% Similarity=0.033 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHH-hhcCcchhhHHHHHHHHHHhcccccc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEI-LSNVNDVNMLKQVIRVLDLILNKIED 176 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~l-L~s~~~~~~~e~A~~~L~~L~~~~~~ 176 (408)
+..++.|++.+.+.+.. +..|++.|..+...... +. ..++.|... +.+. +..+...|+.+|..+.. .+
T Consensus 53 ~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~----~~---~l~~~L~~~~~~d~-~~~vr~~a~~aL~~l~~--~~ 122 (280)
T 1oyz_A 53 QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC----ED---NVFNILNNMALNDK-SACVRATAIESTAQRCK--KN 122 (280)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT----HH---HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHH--HC
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc----ch---HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhc--cC
Confidence 44566666666666555 66666666555321110 00 122223221 2222 23344666666666542 11
Q ss_pred hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338 177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS 256 (408)
Q Consensus 177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~ 256 (408)
.. . ....++.|+.+|.+. +..+|..|+.+|.++.. .++++.|+.+|+++ ++.++..|++
T Consensus 123 ~~------~--~~~~~~~L~~~l~d~-~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~a~~ 181 (280)
T 1oyz_A 123 PI------Y--SPKIVEQSQITAFDK-STNVRRATAFAISVIND-----------KATIPLLINLLKDP-NGDVRNWAAF 181 (280)
T ss_dssp GG------G--HHHHHHHHHHHTTCS-CHHHHHHHHHHHHTC--------------CCHHHHHHHHTCS-SHHHHHHHHH
T ss_pred Cc------c--cHHHHHHHHHHhhCC-CHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 11 0 123466677777776 77777777777766542 24577777777775 7777777777
Q ss_pred HHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhh
Q 036338 257 CLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQD 336 (408)
Q Consensus 257 aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~ 336 (408)
+|..+.... ..+++.|+.+|.++ +..++..|+.+|..+..
T Consensus 182 aL~~~~~~~--------~~~~~~L~~~l~d~---------------------~~~vR~~A~~aL~~~~~----------- 221 (280)
T 1oyz_A 182 AININKYDN--------SDIRDCFVEMLQDK---------------------NEEVRIEAIIGLSYRKD----------- 221 (280)
T ss_dssp HHHHHTCCC--------HHHHHHHHHHTTCS---------------------CHHHHHHHHHHHHHTTC-----------
T ss_pred HHHhhccCc--------HHHHHHHHHHhcCC---------------------CHHHHHHHHHHHHHhCC-----------
Confidence 777764321 23567777777643 66777777777777642
Q ss_pred cCchHHHHHHHHH-----HHHHH---HHhcCcHHHHHHHHhhcCCHHHHHHHHHH
Q 036338 337 AALLNGVVQKMLK-----TAQEA---VSSSNVLTKILLLMQSNCTPAVRQMSADL 383 (408)
Q Consensus 337 ~g~i~~lv~~l~~-----~~~~~---~~~~g~~~~Ll~ll~~~~~~~~k~~A~~l 383 (408)
...++.|++.|.. .+.+. +-....++.|..+++....+.....+...
T Consensus 222 ~~~~~~L~~~l~d~~vr~~a~~aL~~i~~~~~~~~L~~~l~~~~~~~~~~~~~~~ 276 (280)
T 1oyz_A 222 KRVLSVLCDELKKNTVYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDK 276 (280)
T ss_dssp GGGHHHHHHHHTSSSCCHHHHHHHHHHCCGGGHHHHHHHHTTSSCCHHHHHHHHH
T ss_pred HhhHHHHHHHhcCccHHHHHHHHHHhcCchhhhHHHHHHHhcCCCcHHHHHHHHH
Confidence 2456666664322 12222 22345677777777655445555555333
No 97
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.98 E-value=4.8e-08 Score=87.06 Aligned_cols=185 Identities=16% Similarity=0.123 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
+..++.|++.|.+.+.. |..|+..|..+.. . ++++.|+.+|.+++ ..+...|+.+|..+.
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~-~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~------ 78 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------E-RAVEPLIKALKDED-AWVRRAAADALGQIG------ 78 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------G-GGHHHHHHHTTCSC-HHHHHHHHHHHHHHC------
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------c-cHHHHHHHHHcCCC-HHHHHHHHHHHHhhC------
Confidence 66788999999988877 8889988887643 2 77899999998765 334488888876653
Q ss_pred HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC 257 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a 257 (408)
..+.++.|+.+|.+. +..+|..|+.+|..+.. .+.++.|+++|+++ ++.++..|+.+
T Consensus 79 ----------~~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~a~~a 135 (211)
T 3ltm_A 79 ----------DERAVEPLIKALKDE-DGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDE-DWFVRIAAAFA 135 (211)
T ss_dssp ----------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-SHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 335678888899988 99999999999988742 35789999999887 89999999999
Q ss_pred HHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhc
Q 036338 258 LITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDA 337 (408)
Q Consensus 258 L~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 337 (408)
|.++.. ..+++.|+.+|.++ ++.++..|+.+|..+.. .
T Consensus 136 L~~~~~----------~~~~~~L~~~l~d~---------------------~~~vr~~a~~aL~~~~~-----------~ 173 (211)
T 3ltm_A 136 LGEIGD----------ERAVEPLIKALKDE---------------------DGWVRQSAADALGEIGG-----------E 173 (211)
T ss_dssp HHHHCC----------GGGHHHHHHHTTCS---------------------SHHHHHHHHHHHHHHCS-----------H
T ss_pred HHHcCC----------HHHHHHHHHHHcCC---------------------CHHHHHHHHHHHHHhCc-----------h
Confidence 999853 35789999999754 78899999999988732 1
Q ss_pred CchHHHHHHHHHHHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 338 ALLNGVVQKMLKTAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 338 g~i~~lv~~l~~~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
. +++.|..+++. .++.+|..|...|..+..
T Consensus 174 ~---------------------~~~~L~~~l~d-~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 174 R---------------------VRAAMEKLAET-GTGFARKVAVNYLETHKS 203 (211)
T ss_dssp H---------------------HHHHHHHHHHH-CCHHHHHHHHHHHHC---
T ss_pred h---------------------HHHHHHHHHhC-CCHHHHHHHHHHHHhcCC
Confidence 1 22334444443 457788888777777666
No 98
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.98 E-value=8.3e-08 Score=84.81 Aligned_cols=152 Identities=16% Similarity=0.115 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
+...+.+++.|.+.+.. |..|+..|..+.. . +.++.|+.+|.+++ ..+...|+.+|..+.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~-~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~------ 73 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------E-RAVEPLIKALKDED-AWVRRAAADALGQIG------ 73 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------G-GGHHHHHHHTTCSS-HHHHHHHHHHHHHHC------
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------h-hHHHHHHHHHcCCC-HHHHHHHHHHHHhhC------
Confidence 78889999999999988 9999999987643 2 67899999998665 334478888876653
Q ss_pred HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC 257 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a 257 (408)
....++.|+.+|.+. +..+|..|+++|..+. . ..+++.|+++|+++ ++.++..|+++
T Consensus 74 ----------~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~----------~-~~~~~~L~~~l~d~-~~~vr~~a~~a 130 (201)
T 3ltj_A 74 ----------DERAVEPLIKALKDE-DGWVRQSAAVALGQIG----------D-ERAVEPLIKALKDE-DWFVRIAAAFA 130 (201)
T ss_dssp ----------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC----------C-GGGHHHHHHHTTCS-SHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC----------c-HHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 335678888999988 9999999999999864 2 35789999999987 99999999999
Q ss_pred HHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHH
Q 036338 258 LITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEIL 323 (408)
Q Consensus 258 L~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L 323 (408)
|..+.. ..+++.|+.+|.++ +..++..|+.+|..+
T Consensus 131 L~~~~~----------~~~~~~L~~~l~d~---------------------~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 131 LGEIGD----------ERAVEPLIKALKDE---------------------DGWVRQSAADALGEI 165 (201)
T ss_dssp HHHHTC----------GGGHHHHHHHTTCS---------------------SHHHHHHHHHHHHHH
T ss_pred HHHhCC----------HHHHHHHHHHHcCC---------------------CHHHHHHHHHHHHHh
Confidence 998853 46889999999754 788999999999988
No 99
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=3.9e-11 Score=89.66 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=39.9
Q ss_pred CCCcccccCccccCCCceecCCCCc-ccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 10 VPSFFRCPISLDVMKSPVSLCTGVT-YDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~dPv~~~cgh~-f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
+.+++.||||.+.+++||+++|||+ ||+.|+.++ ..||.||+++..
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 3456889999999999999999999 999999643 569999998755
No 100
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.93 E-value=4.9e-10 Score=108.30 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=44.0
Q ss_pred cccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCC
Q 036338 13 FFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSK 61 (408)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~ 61 (408)
...||||.+.+.+||+++|||.||..||.+|+......||.||.++...
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 3689999999999999999999999999999986667899999987653
No 101
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.90 E-value=2e-10 Score=89.70 Aligned_cols=67 Identities=13% Similarity=0.240 Sum_probs=47.7
Q ss_pred CCcccccCccccCCCceec---CCCCcccHhhHHHHHhc----CC---CCCCC--cccc--cCCCCCcccHHHHHHHHHH
Q 036338 11 PSFFRCPISLDVMKSPVSL---CTGVTYDRASIQRWLDS----GN---NTCPA--TMQV--LQSKEFVPNRTLQRLIQIW 76 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~---~cgh~f~r~cI~~~~~~----~~---~~CP~--~~~~--l~~~~l~~n~~l~~~I~~~ 76 (408)
.+.+.||||.+.+.+|+++ +|||+||+.||.+||.. +. ..||. |+.. +.+..+ .+....+.+++|
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i-~~ll~~~~~~ky 81 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI-ECMVAAEIMQRY 81 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH-HHHSCHHHHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH-HHHCCHHHHHHH
Confidence 3578999999999999875 69999999999999863 32 36999 9887 543222 122224455555
Q ss_pred HH
Q 036338 77 SD 78 (408)
Q Consensus 77 ~~ 78 (408)
.+
T Consensus 82 ~~ 83 (94)
T 1wim_A 82 KK 83 (94)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 102
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.90 E-value=5.2e-08 Score=90.82 Aligned_cols=215 Identities=12% Similarity=0.026 Sum_probs=149.9
Q ss_pred HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH
Q 036338 101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH 179 (408)
Q Consensus 101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~ 179 (408)
.++.|++.|.+.+.. +..|++.|..+.. . ++++.|+.+|.+++ ..+...|+.+|..+.. .+..
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~-~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~--~~~~- 87 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------Q-DAVRLAIEFCSDKN-YIRRDIGAFILGQIKI--CKKC- 87 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------H-HHHHHHHHHHTCSS-HHHHHHHHHHHHHSCC--CTTT-
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------c-hHHHHHHHHHcCCC-HHHHHHHHHHHHHhcc--cccc-
Confidence 477889999988877 8889999987752 2 67899999998876 3344889999988753 1111
Q ss_pred HHHHHhccCcccHHHHHH-HHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHH
Q 036338 180 LMNLILKRDQDCLNSLLL-VLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCL 258 (408)
Q Consensus 180 ~~~~i~~~~~g~i~~Lv~-lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL 258 (408)
+ ...++.|.. ++.+. +..+|..|+++|.++...... .. ..+++.|+.+|+++ ++.++..|+.+|
T Consensus 88 ----~----~~l~~~L~~~~~~d~-~~~vr~~a~~aL~~l~~~~~~----~~-~~~~~~L~~~l~d~-~~~vR~~a~~aL 152 (280)
T 1oyz_A 88 ----E----DNVFNILNNMALNDK-SACVRATAIESTAQRCKKNPI----YS-PKIVEQSQITAFDK-STNVRRATAFAI 152 (280)
T ss_dssp ----H----HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHCGG----GH-HHHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred ----c----hHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHhccCCc----cc-HHHHHHHHHHhhCC-CHHHHHHHHHHH
Confidence 1 112444443 45666 899999999999998743210 11 35789999999987 999999999999
Q ss_pred HHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcC
Q 036338 259 ITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAA 338 (408)
Q Consensus 259 ~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g 338 (408)
.++.. .++++.|+.+|.++ +..++..|+.+|..+.... ..
T Consensus 153 ~~~~~----------~~~~~~L~~~l~d~---------------------~~~vr~~a~~aL~~~~~~~---------~~ 192 (280)
T 1oyz_A 153 SVIND----------KATIPLLINLLKDP---------------------NGDVRNWAAFAININKYDN---------SD 192 (280)
T ss_dssp HTC-------------CCHHHHHHHHTCS---------------------SHHHHHHHHHHHHHHTCCC---------HH
T ss_pred HhcCC----------HHHHHHHHHHHcCC---------------------CHHHHHHHHHHHHhhccCc---------HH
Confidence 98754 35899999999864 7889999999999985321 12
Q ss_pred chHHHHHHHHH---HHHHH----H---HhcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 339 LLNGVVQKMLK---TAQEA----V---SSSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 339 ~i~~lv~~l~~---~~~~~----~---~~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
.++.|++.|.. .++.. + -...+++.|+.+++.. .+|..|...|..+..
T Consensus 193 ~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~~~~~~L~~~l~d~---~vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 193 IRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKN---TVYDDIIEAAGELGD 250 (280)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHHTSS---SCCHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCHhhHHHHHHHhcCc---cHHHHHHHHHHhcCc
Confidence 34555553322 22222 2 2456888998888753 267777777766543
No 103
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.89 E-value=6.2e-08 Score=86.34 Aligned_cols=134 Identities=16% Similarity=0.180 Sum_probs=106.9
Q ss_pred ChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC
Q 036338 142 GLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD 221 (408)
Q Consensus 142 G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~ 221 (408)
+.++.|+.+|.+++ ..+...|+..|..+. ...+++.|+.+|.++ +..+|..|+.+|..+.
T Consensus 19 ~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~----------------~~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~-- 78 (211)
T 3ltm_A 19 EKVEMYIKNLQDDS-YYVRRAAAYALGKIG----------------DERAVEPLIKALKDE-DAWVRRAAADALGQIG-- 78 (211)
T ss_dssp GGHHHHHHHTTCSS-HHHHHHHHHHHHHHC----------------CGGGHHHHHHHTTCS-CHHHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHHcCCC-HHHHHHHHHHHHHhC----------------CccHHHHHHHHHcCC-CHHHHHHHHHHHHhhC--
Confidence 78999999998766 333478888776542 335688899999998 9999999999998874
Q ss_pred cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCC
Q 036338 222 ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGN 301 (408)
Q Consensus 222 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~ 301 (408)
. .+.++.|+++|+++ ++.++..|+.+|..+.. .++++.|+.+|.++
T Consensus 79 --------~-~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-------------- 124 (211)
T 3ltm_A 79 --------D-ERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE-------------- 124 (211)
T ss_dssp --------C-GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS--------------
T ss_pred --------C-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC--------------
Confidence 2 45789999999987 89999999999998854 35889999999754
Q ss_pred CCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHH
Q 036338 302 GNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKM 347 (408)
Q Consensus 302 ~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l 347 (408)
+..++..|+.+|..+.. ...++.|++++
T Consensus 125 -------~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l 152 (211)
T 3ltm_A 125 -------DWFVRIAAAFALGEIGD-----------ERAVEPLIKAL 152 (211)
T ss_dssp -------SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT
T ss_pred -------CHHHHHHHHHHHHHcCC-----------HHHHHHHHHHH
Confidence 88999999999999853 24566666643
No 104
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.86 E-value=3.2e-10 Score=94.09 Aligned_cols=55 Identities=25% Similarity=0.453 Sum_probs=48.3
Q ss_pred CCcccccCccccCCCc-------eecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCccc
Q 036338 11 PSFFRCPISLDVMKSP-------VSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPN 66 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dP-------v~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n 66 (408)
++.+.||||++.|.+| ++++|||+||..||.+|++. ..+||.|+.++...++.|+
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceee
Confidence 5678899999999998 88899999999999999986 4589999999887776664
No 105
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.86 E-value=2.1e-08 Score=105.76 Aligned_cols=199 Identities=14% Similarity=0.168 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHH-HhhcCcchhhHHHHHHHHHHhcccccc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVE-ILSNVNDVNMLKQVIRVLDLILNKIED 176 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~-lL~s~~~~~~~e~A~~~L~~L~~~~~~ 176 (408)
...|.++++.|++++++ |..|+.+|.+++. ++..+..+... |+|..++. +|.+++ ..++++|+++|.||+. ..
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~-~~v~~ll~~lL~D~~-~~Vr~~A~gaLrnL~~--~~ 107 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLRE-QVVHIVLTETLTDNN-IDSRAAGWEILKVLAQ--EE 107 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHT-THHHHHHHTTTTCSC-HHHHHHHHHHHHHHHH--HS
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHc-CCHHHHHHHHcCCCC-HHHHHHHHHHHHHHHh--hc
Confidence 44567899999999887 9999999999996 68899999988 88887665 565554 4455999999999986 33
Q ss_pred hHHHHHHHhccCcccHHHHHHHHhcCC-------------Ch-------HHHHHHHHHHHHhhcCc-chhhHHhhhcChH
Q 036338 177 QQHLMNLILKRDQDCLNSLLLVLKQQE-------------SV-------DSRIESLRLLEFIAGDA-DSKVKIAERDGLL 235 (408)
Q Consensus 177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~-------------~~-------~~~~~Aa~~L~~La~~~-~~~~~i~~~~g~i 235 (408)
...+...+. ..|++++|..+|++.. .. +...++..+|.+||... +....+.. .+.+
T Consensus 108 g~d~~~~l~--~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~-~~~l 184 (684)
T 4gmo_A 108 EADFCVHLY--RLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT-KQTI 184 (684)
T ss_dssp CHHHHHHHH--HTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT-CHHH
T ss_pred CchHHHHHH--HcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh-cccH
Confidence 222344555 7899999999986410 01 12345778888888654 44556666 7899
Q ss_pred HHHHHhcccC--CCHHHHHHHHHHHHHhccCcc-hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcch
Q 036338 236 AETVKSLSLD--SDRRLIEASLSCLITISSSKR-AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLI 312 (408)
Q Consensus 236 ~~Lv~lL~~~--~~~~~~~~A~~aL~~Ls~~~~-n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (408)
+.|+.+|.+. ...+++.+|+.+|++|+.... ....+.+.|....+..++... ..+...
T Consensus 185 ~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~-------------------~~~~~~ 245 (684)
T 4gmo_A 185 LRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLA-------------------TGTDPR 245 (684)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHH-------------------HSSCTT
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHh-------------------cCCcHH
Confidence 9999998532 246899999999999999654 455555666543333333211 113345
Q ss_pred HHHHHHHHHHHh
Q 036338 313 TEKALRLVEILS 324 (408)
Q Consensus 313 ~~~a~~~L~~L~ 324 (408)
+..++++|.|+.
T Consensus 246 ~~la~giL~Ni~ 257 (684)
T 4gmo_A 246 AVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhHh
Confidence 678889999873
No 106
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.81 E-value=1.4e-07 Score=83.39 Aligned_cols=175 Identities=15% Similarity=0.185 Sum_probs=130.7
Q ss_pred ChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC
Q 036338 142 GLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD 221 (408)
Q Consensus 142 G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~ 221 (408)
+..+.++.+|.+++ ..+...|+.+|..+. ....++.|+.+|.++ +..+|..|+.+|..+.
T Consensus 14 ~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~----------------~~~~~~~L~~~l~~~-~~~vr~~a~~~L~~~~-- 73 (201)
T 3ltj_A 14 EKVEMYIKNLQDDS-YYVRRAAAYALGKIG----------------DERAVEPLIKALKDE-DAWVRRAAADALGQIG-- 73 (201)
T ss_dssp HHHHHHHHHTTCSC-HHHHHHHHHHHHHHC----------------CGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--
T ss_pred cchHHHHHHhcCCC-HHHHHHHHHHHHhcC----------------ChhHHHHHHHHHcCC-CHHHHHHHHHHHHhhC--
Confidence 67889999999887 233388888876542 235688899999988 9999999999998764
Q ss_pred cchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCC
Q 036338 222 ADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGN 301 (408)
Q Consensus 222 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~ 301 (408)
. ...++.|+++|.++ ++.++..|+++|..+.. ..+++.|+.+|.++
T Consensus 74 --------~-~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-------------- 119 (201)
T 3ltj_A 74 --------D-ERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE-------------- 119 (201)
T ss_dssp --------C-GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS--------------
T ss_pred --------C-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCC--------------
Confidence 2 35789999999987 99999999999998754 35889999999754
Q ss_pred CCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHH---HHH----HHHH---hcCcHHHHHHHHhhc
Q 036338 302 GNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLK---TAQ----EAVS---SSNVLTKILLLMQSN 371 (408)
Q Consensus 302 ~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~---~~~----~~~~---~~g~~~~Ll~ll~~~ 371 (408)
++.++..|+.+|..+.. ...++.|++++.. .++ ..+. ...+++.|..+++.
T Consensus 120 -------~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d- 180 (201)
T 3ltj_A 120 -------DWFVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAET- 180 (201)
T ss_dssp -------SHHHHHHHHHHHHHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHH-
T ss_pred -------CHHHHHHHHHHHHHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhC-
Confidence 88999999999999854 2456666664322 222 2222 23456777777754
Q ss_pred CCHHHHHHHHHHHHHHhh
Q 036338 372 CTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 372 ~~~~~k~~A~~lL~~l~~ 389 (408)
.++.+|..|...|..+..
T Consensus 181 ~~~~vr~~A~~aL~~l~~ 198 (201)
T 3ltj_A 181 GTGFARKVAVNYLETHKS 198 (201)
T ss_dssp CCHHHHHHHHHHHHHCC-
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 468899999888776653
No 107
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=2.9e-09 Score=80.59 Aligned_cols=48 Identities=19% Similarity=0.314 Sum_probs=39.9
Q ss_pred CcccccCccccCCC--------------ceec-CCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 12 SFFRCPISLDVMKS--------------PVSL-CTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 12 ~~~~Cpi~~~~~~d--------------Pv~~-~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
++-.|+||++.|.+ ++++ +|||.|.+.||.+|+.. +.+||.||+++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 45679999999988 4555 59999999999999986 4589999988643
No 108
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.79 E-value=2.5e-09 Score=77.02 Aligned_cols=48 Identities=21% Similarity=0.216 Sum_probs=42.4
Q ss_pred CCcccccCccccCCCceec--CCCCc-ccHhhHHHHHhcCCCCCCCcccccC
Q 036338 11 PSFFRCPISLDVMKSPVSL--CTGVT-YDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~--~cgh~-f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
+++..|+||.+-++|+|++ +|||. ||..|+.+|+.. +..||.||+++.
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence 4667899999999999988 99999 899999999974 457999998864
No 109
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.74 E-value=3.4e-09 Score=76.06 Aligned_cols=47 Identities=15% Similarity=0.187 Sum_probs=41.4
Q ss_pred CcccccCccccCCCceec--CCCCc-ccHhhHHHHHhcCCCCCCCcccccC
Q 036338 12 SFFRCPISLDVMKSPVSL--CTGVT-YDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~--~cgh~-f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
.+..|+||.+-++|++++ +|||. ||..|+.+|+.. ...||.||+++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence 346799999999999988 99998 999999999975 467999999874
No 110
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.72 E-value=2.4e-09 Score=80.57 Aligned_cols=46 Identities=11% Similarity=0.166 Sum_probs=40.7
Q ss_pred CCCcccccCccccCCCceecCCCCc-ccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 10 VPSFFRCPISLDVMKSPVSLCTGVT-YDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~dPv~~~cgh~-f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
+.++..|+||.+.+++||+++|||. ||..|+..|+ .||.||+++..
T Consensus 15 l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~ 61 (79)
T 2yho_A 15 LKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH 61 (79)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred CCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence 3456789999999999999999999 9999999874 69999998754
No 111
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.66 E-value=1.7e-07 Score=98.97 Aligned_cols=149 Identities=13% Similarity=0.102 Sum_probs=110.6
Q ss_pred ccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHH-hcccCCCHHHHHHHHHHHHHhccC--cc
Q 036338 190 DCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVK-SLSLDSDRRLIEASLSCLITISSS--KR 266 (408)
Q Consensus 190 g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~~A~~aL~~Ls~~--~~ 266 (408)
..|.|+++.|+++ +.+.|..|+.+|.+|+.++..+..+.. .|+|.+++. +|.+. +.+++++|++||+||+.. .+
T Consensus 34 ~~i~Pll~~L~S~-~~~~r~~A~~al~~l~~~~~~~~l~~~-~~~v~~ll~~lL~D~-~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 34 DKILPVLKDLKSP-DAKSRTTAAGAIANIVQDAKCRKLLLR-EQVVHIVLTETLTDN-NIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HTTHHHHHHHSSS-CCSHHHHHHHHHHHHTTSHHHHHHHHH-TTHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHHHSCHH
T ss_pred hhHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCcHHHHHHHH-cCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhhcCch
Confidence 4466788889998 999999999999999998888888876 788887665 67765 899999999999999874 46
Q ss_pred hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCC-------cchHHHHHHHHHHHhC-CHHHHHHHHhhcC
Q 036338 267 AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGT-------VLITEKALRLVEILST-TKQGRMEICQDAA 338 (408)
Q Consensus 267 n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~a~~~L~~L~~-~~~~~~~~~~~~g 338 (408)
.+..+++.|++++|+.+|.... .+... ..... . ... ..+.+.++.+|.+|+. +++....+... +
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~---~~~~~--~~~~~-~-~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~-~ 182 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVL---ETLTT--SEPPF-S-KLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATK-Q 182 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHH---HHHHC--BTTBG-G-GSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTC-H
T ss_pred HHHHHHHcChHHHHHHHHHhhH---HHHhh--hcccc-c-cccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhc-c
Confidence 7888999999999999986410 00000 00000 0 000 1345678889999985 56677777764 8
Q ss_pred chHHHHHHHHH
Q 036338 339 LLNGVVQKMLK 349 (408)
Q Consensus 339 ~i~~lv~~l~~ 349 (408)
+++.|+..|..
T Consensus 183 ~l~~l~~~L~~ 193 (684)
T 4gmo_A 183 TILRLLFRLIS 193 (684)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHh
Confidence 89999998765
No 112
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=2.3e-08 Score=72.86 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=40.4
Q ss_pred CCCCcccccCccccCCCceecCCCCc-ccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 9 TVPSFFRCPISLDVMKSPVSLCTGVT-YDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~~cgh~-f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
.-.++..|+||.+..++||+++|||. ||..|+.. ...||.||+++..
T Consensus 11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 33457899999999999999999999 99999984 3579999998754
No 113
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.64 E-value=1.9e-08 Score=79.91 Aligned_cols=46 Identities=17% Similarity=0.349 Sum_probs=39.3
Q ss_pred cccccCccccCCCc------------------eecCCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338 13 FFRCPISLDVMKSP------------------VSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 13 ~~~Cpi~~~~~~dP------------------v~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
+-.|+||.+.|.+| +.++|||.|...||.+|+.. +.+||.||+++.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 45799999999987 34689999999999999985 678999998753
No 114
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.61 E-value=7.7e-09 Score=99.37 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=40.5
Q ss_pred CCcccccCccccCCCceecCCCCc-ccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 11 PSFFRCPISLDVMKSPVSLCTGVT-YDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~cgh~-f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
.+++.||||.+.+.+||+++|||+ ||+.|+..| ..||.||.++..
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 467899999999999999999999 999999988 469999988753
No 115
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=2.3e-07 Score=69.68 Aligned_cols=51 Identities=20% Similarity=0.196 Sum_probs=42.5
Q ss_pred CCCcccccCccccC--CCceecCCC-----CcccHhhHHHHHhcC-CCCCCCcccccCC
Q 036338 10 VPSFFRCPISLDVM--KSPVSLCTG-----VTYDRASIQRWLDSG-NNTCPATMQVLQS 60 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~--~dPv~~~cg-----h~f~r~cI~~~~~~~-~~~CP~~~~~l~~ 60 (408)
..++..|+||++.+ .+|++++|+ |.|-+.||.+|+... ..+||+|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34567899999887 469999996 999999999999864 4689999998764
No 116
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.37 E-value=1.9e-05 Score=85.17 Aligned_cols=275 Identities=11% Similarity=0.137 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhh--hhh-hcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKT--FLA-KFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKI 174 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~--~i~-~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~ 174 (408)
++-++.|++.+.+.+.. +..++..|..++++.+..-. .+. .....+|.++.++++.+ ..++..|+.+|.++..
T Consensus 127 p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~-~~vR~~A~~aL~~~~~-- 203 (852)
T 4fdd_A 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSS-PKIRSHAVACVNQFII-- 203 (852)
T ss_dssp TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSS-HHHHHHHHHHHHTTTT--
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHh--
Confidence 45788889999888777 88899999999876433211 000 01146777777777655 3445889999988775
Q ss_pred cchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHH
Q 036338 175 EDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEAS 254 (408)
Q Consensus 175 ~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A 254 (408)
...+..... -...++.|..++.++ +.++|..|+.+|..++........-.- .++++.+++++++. +..++..|
T Consensus 204 ~~~~~~~~~----~~~~l~~l~~~~~d~-~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~-~~~vr~~a 276 (852)
T 4fdd_A 204 SRTQALMLH----IDSFIENLFALAGDE-EPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQ-DENVALEA 276 (852)
T ss_dssp TTCHHHHTS----HHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCS-SHHHHHHH
T ss_pred cccHHHHHH----HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCC-cHHHHHHH
Confidence 222211111 136788999999888 999999999999999875432111111 35788889998886 88999999
Q ss_pred HHHHHHhccCcchHHHHH--hcCcHHHHHHHhccCCCCCC--CCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHH
Q 036338 255 LSCLITISSSKRAKTKLI--NHKLITELGKLITDGHNGNG--SGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGR 330 (408)
Q Consensus 255 ~~aL~~Ls~~~~n~~~~~--~~G~i~~Lv~lL~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~ 330 (408)
+.++.+++.....+..+. -...+|.|+..+........ .++ .+-+........+-.++..|..+|..|+....
T Consensus 277 ~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d-~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~-- 353 (852)
T 4fdd_A 277 CEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGD-VEGGSGGDDTISDWNLRKCSAAALDVLANVYR-- 353 (852)
T ss_dssp HHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC-------------CCCCHHHHHHHHHHHHHHHHG--
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCC-cccccccccccccchHHHHHHHHHHHHHHhcc--
Confidence 999999998654443222 13567777777721000000 000 00000000000234567888888888875321
Q ss_pred HHHHhhcCchHHHHHHHHH---HHHHHHH-----------------hcCcHHHHHHHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 331 MEICQDAALLNGVVQKMLK---TAQEAVS-----------------SSNVLTKILLLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 331 ~~~~~~~g~i~~lv~~l~~---~~~~~~~-----------------~~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
..+.. ..+|.+.+.+.. ..++.++ -.+.++.|+..+. +..+.+|..|...+..+..
T Consensus 354 ~~~~~--~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~-d~~~~Vr~~a~~~l~~l~~ 429 (852)
T 4fdd_A 354 DELLP--HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS-DKKALVRSITCWTLSRYAH 429 (852)
T ss_dssp GGGHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHTHH
T ss_pred HHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHH
Confidence 11111 234444443221 2222221 1234555555554 5578899988888877665
No 117
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.31 E-value=2.3e-05 Score=84.48 Aligned_cols=192 Identities=10% Similarity=0.062 Sum_probs=133.1
Q ss_pred HHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH
Q 036338 100 DEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ 178 (408)
Q Consensus 100 ~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~ 178 (408)
..++.++..+...+.+ +..|++.|..++...+..-....+ +.++.++.++++.+ ..+...|+..+..++. .. .
T Consensus 215 ~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~--~l~~~l~~~~~~~~-~~vr~~a~e~l~~l~~--~~-~ 288 (852)
T 4fdd_A 215 SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH--NIVEYMLQRTQDQD-ENVALEACEFWLTLAE--QP-I 288 (852)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH--HHHHHHHHHHTCSS-HHHHHHHHHHHHHHTT--ST-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH--HHHHHHHHHccCCc-HHHHHHHHHHHHHHhc--ch-h
Confidence 4566777777777777 889999999998876554322222 57888888887665 3344888888888874 22 1
Q ss_pred HHHHHHhccCcccHHHHHHHHh-----------c-----------CCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHH
Q 036338 179 HLMNLILKRDQDCLNSLLLVLK-----------Q-----------QESVDSRIESLRLLEFIAGDADSKVKIAERDGLLA 236 (408)
Q Consensus 179 ~~~~~i~~~~~g~i~~Lv~lL~-----------~-----------~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~ 236 (408)
.++.+.-.-...++.++..+. . . +..+|..|+.+|..|+.... ..+. ..+++
T Consensus 289 -~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~-~~~vr~~a~~~L~~la~~~~--~~~~--~~l~~ 362 (852)
T 4fdd_A 289 -CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTIS-DWNLRKCSAAALDVLANVYR--DELL--PHILP 362 (852)
T ss_dssp -HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------C-CCCHHHHHHHHHHHHHHHHG--GGGH--HHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccc-cchHHHHHHHHHHHHHHhcc--HHHH--HHHHH
Confidence 134332001245666666652 2 1 23468889999999986543 1222 24788
Q ss_pred HHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHH
Q 036338 237 ETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKA 316 (408)
Q Consensus 237 ~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 316 (408)
.|..++++. +...++.|+.+|.+++.+......-.-.++++.|+.+|.++ ++.++..|
T Consensus 363 ~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~---------------------~~~Vr~~a 420 (852)
T 4fdd_A 363 LLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK---------------------KALVRSIT 420 (852)
T ss_dssp HHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS---------------------SHHHHHHH
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC---------------------CHHHHHHH
Confidence 888888886 89999999999999998765322222366889999999754 88999999
Q ss_pred HHHHHHHhC
Q 036338 317 LRLVEILST 325 (408)
Q Consensus 317 ~~~L~~L~~ 325 (408)
+.+|.+++.
T Consensus 421 ~~~l~~l~~ 429 (852)
T 4fdd_A 421 CWTLSRYAH 429 (852)
T ss_dssp HHHHHHTHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 118
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.30 E-value=8.9e-08 Score=77.16 Aligned_cols=45 Identities=20% Similarity=0.413 Sum_probs=0.0
Q ss_pred ccccCccccCCCc-----------------ee-cCCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338 14 FRCPISLDVMKSP-----------------VS-LCTGVTYDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 14 ~~Cpi~~~~~~dP-----------------v~-~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
-.|+||++.|.+| ++ ++|||.|...||.+|+.. +.+||.||+++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 4799999999885 32 489999999999999986 568999998753
No 119
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.24 E-value=7.3e-05 Score=76.21 Aligned_cols=185 Identities=10% Similarity=0.059 Sum_probs=126.5
Q ss_pred HHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHH
Q 036338 102 VKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHL 180 (408)
Q Consensus 102 i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~ 180 (408)
++.+.+.+...++. |..|+..|..++...+.. . ... ..+|.+..++.+.+ ..+...|+.+|..++. .-..
T Consensus 166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~-~~~-~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~--~~~~-- 236 (588)
T 1b3u_A 166 RQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--N-VKS-EIIPMFSNLASDEQ-DSVRLLAVEACVNIAQ--LLPQ-- 236 (588)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--H-HHH-THHHHHHHHHTCSC-HHHHTTHHHHHHHHHH--HSCH--
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--h-HHH-HHHHHHHHHhcCCc-HHHHHHHHHHHHHHHH--hCCH--
Confidence 44444555666666 888999999887653321 1 123 67888999887766 2334788888888764 1111
Q ss_pred HHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHH
Q 036338 181 MNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLIT 260 (408)
Q Consensus 181 ~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~ 260 (408)
..+ ....++.+..++.+. +..+|..|+.+|..++...... .+ . ..+++.++.+++++ ++.+++.|+.+|..
T Consensus 237 -~~~---~~~~~~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~-~~-~-~~l~~~l~~~l~d~-~~~vr~~a~~~l~~ 307 (588)
T 1b3u_A 237 -EDL---EALVMPTLRQAAEDK-SWRVRYMVADKFTELQKAVGPE-IT-K-TDLVPAFQNLMKDC-EAEVRAAASHKVKE 307 (588)
T ss_dssp -HHH---HHHTHHHHHHHHTCS-SHHHHHHHHHTHHHHHHHHCHH-HH-H-HTHHHHHHHHHTCS-SHHHHHHHHHHHHH
T ss_pred -HHH---HHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHHhCcc-cc-h-hHHHHHHHHHhCCC-cHHHHHHHHHHHHH
Confidence 111 235688888888887 8999999999999998643221 12 2 45799999999986 89999999999999
Q ss_pred hccCcc--hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 261 ISSSKR--AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 261 Ls~~~~--n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
++..-. .+....-...+|.+..++.++ +..++..++.+|..++.
T Consensus 308 ~~~~~~~~~~~~~~~~~l~p~l~~~l~d~---------------------~~~vR~~a~~~l~~l~~ 353 (588)
T 1b3u_A 308 FCENLSADCRENVIMSQILPCIKELVSDA---------------------NQHVKSALASVIMGLSP 353 (588)
T ss_dssp HHHTSCTTTHHHHHHHTHHHHHHHHHTCS---------------------CHHHHHHHHTTGGGGHH
T ss_pred HHHHhChhhhhhHHHHHHHHHHHHHhcCC---------------------CHHHHHHHHHHHHHHHH
Confidence 876432 222223345677888887653 66777777777777653
No 120
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.22 E-value=9.7e-05 Score=65.95 Aligned_cols=248 Identities=13% Similarity=0.171 Sum_probs=166.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCCccCHHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhC-hhhhhhhhhcCChH
Q 036338 67 RTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAISKNED-FSENLTKIVAFAKES-DENKTFLAKFDGLV 144 (408)
Q Consensus 67 ~~l~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~-~~~r~~i~~~~G~i 144 (408)
..++.-+..|.-+..... ... +++.+..|++.|...+.. +.+++..|..+.++- ...+..+.+ ..+
T Consensus 10 ~~lre~L~sWkiK~a~el----a~~------~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e--~~L 77 (265)
T 3b2a_A 10 TELRELVLSWQILDAVSL----ALE------DKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE--RHL 77 (265)
T ss_dssp HHHHHHHHTTCHHHHHHH----HHH------CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH--HHH
T ss_pred HHHHHHHHHhhHHHHHHH----HHh------chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH--HHH
Confidence 456777777755432100 000 266788888999888877 999999999998873 445555555 579
Q ss_pred HHHHHHhhcCcchhhHHHHHHHHHHhccccc-chHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc
Q 036338 145 VMLVEILSNVNDVNMLKQVIRVLDLILNKIE-DQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD 223 (408)
Q Consensus 145 ~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~-~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~ 223 (408)
+.++.++++.+ .++.-.|+.+|..|..+.. +++++.. .+..|..++.++ +.-.+.+|+..|..+.-...
T Consensus 78 d~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~~~y~K--------l~~aL~dlik~~-~~il~~eaae~Lgklkv~~~ 147 (265)
T 3b2a_A 78 DVFINALSQEN-EKVTIKALRALGYLVKDVPMGSKTFLK--------AAKTLVSLLESP-DDMMRIETIDVLSKLQPLED 147 (265)
T ss_dssp HHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCHHHHHH--------HHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCC
T ss_pred HHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCHHHHHH--------HHHHHHHHhcCC-CchHHHHHHHHhCcCCcccc
Confidence 99999997776 5555778888887764211 2222222 356778888888 99999999999999932222
Q ss_pred hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCC
Q 036338 224 SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGN 303 (408)
Q Consensus 224 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~ 303 (408)
..+++..|.+++.+. +++++.+|.++|.+++...++.. +-.+++.-+-++|++.
T Consensus 148 -------~~~V~~~l~sLl~Sk-d~~vK~agl~~L~eia~~S~D~~--i~~~I~~eI~elL~~e---------------- 201 (265)
T 3b2a_A 148 -------SKLVRTYINELVVSP-DLYTKVAGFCLFLNMLNSSADSG--HLTLILDEIPSLLQND---------------- 201 (265)
T ss_dssp -------CHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHGGGCSSCC--CGGGTTTTHHHHHTCS----------------
T ss_pred -------hHHHHHHHHHHHhCC-ChhHHHHHHHHHHHhhcccCCHH--HHHHHHHHHHHHHcCC----------------
Confidence 245667788888765 99999999999999988543211 1123445566777753
Q ss_pred CCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHHHHHHHHHhcCcHHHHHHHHh-hcCCHHHHHHHHH
Q 036338 304 GSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLKTAQEAVSSSNVLTKILLLMQ-SNCTPAVRQMSAD 382 (408)
Q Consensus 304 ~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~~~~~~~~~~g~~~~Ll~ll~-~~~~~~~k~~A~~ 382 (408)
|+.+++.|+.+|..+...+ +. +..++.+.+. + ..+.-|- -.+.|..|.+|+.
T Consensus 202 -----D~~l~e~aLd~Le~ils~p-----i~--~~~~~~~~~~-~--------------~~v~~l~~~~~~~~~~~ka~~ 254 (265)
T 3b2a_A 202 -----NEFIVELALDVLEKALSFP-----LL--ENVKIELLKI-S--------------RIVDGLVYREGAPIIRLKAKK 254 (265)
T ss_dssp -----CHHHHHHHHHHHHHHTTSC-----CC--SCCHHHHHHH-H--------------HHHHHGGGCSSCHHHHHHHHH
T ss_pred -----CHHHHHHHHHHHHHHHcCc-----cc--HhHHHHHHHH-H--------------HHHHHHHHhcCChhHHHHHHH
Confidence 9999999999999998753 22 2556666652 1 1112222 3456778888877
Q ss_pred HHHHHhh
Q 036338 383 LLKIFRV 389 (408)
Q Consensus 383 lL~~l~~ 389 (408)
+...+-.
T Consensus 255 v~~~le~ 261 (265)
T 3b2a_A 255 VSDLIDS 261 (265)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666543
No 121
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.12 E-value=4.9e-05 Score=69.02 Aligned_cols=181 Identities=15% Similarity=0.202 Sum_probs=129.0
Q ss_pred HHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhh-cCcchhhHHHHHHHHHHhcccccchHHHHH
Q 036338 105 IIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILS-NVNDVNMLKQVIRVLDLILNKIEDQQHLMN 182 (408)
Q Consensus 105 Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~-s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~ 182 (408)
+.+.+.+.+-. |..|+..|..+...++..... .....++.|..+|. +.+ .++...|+.+|..|+..... .+..
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~--~~~~i~~~L~~~l~kd~~-~~V~~~a~~~l~~la~~l~~--~~~~ 94 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLENG--EYGALVSALKKVITKDSN-VVLVAMAGKCLALLAKGLAK--RFSN 94 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC--CCHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHGG--GGHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCCC--CHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHHHhh--hHHH
Confidence 66778777766 999999999998774332111 11145777888884 544 44558899999888752111 1122
Q ss_pred HHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhc
Q 036338 183 LILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITIS 262 (408)
Q Consensus 183 ~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls 262 (408)
.+ ...++.|+..+.+. +..+|..|..+|..+..... + ..+++.|...|++. ++.++..++..|..+.
T Consensus 95 ~~----~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~----~---~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l 161 (242)
T 2qk2_A 95 YA----SACVPSLLEKFKEK-KPNVVTALREAIDAIYASTS----L---EAQQESIVESLSNK-NPSVKSETALFIARAL 161 (242)
T ss_dssp HH----HHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSC----H---HHHHHHHHHHTTCS-CHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCC----H---HHHHHHHHHHHcCC-ChHHHHHHHHHHHHHH
Confidence 22 35689999999988 99999999999999986543 1 24688899999987 8999999999999954
Q ss_pred -cCcch--HHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 263 -SSKRA--KTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 263 -~~~~n--~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
..... -.... ...+|.|+.+|.++ +..++..|..+|..++.
T Consensus 162 ~~~~~~~~~~~~l-~~l~p~l~~~l~D~---------------------~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 162 TRTQPTALNKKLL-KLLTTSLVKTLNEP---------------------DPTVRDSSAEALGTLIK 205 (242)
T ss_dssp TTCCGGGCCHHHH-HHHHHHHHHHHTSS---------------------CHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCccHHHH-HHHHHHHHHHhcCC---------------------ChHHHHHHHHHHHHHHH
Confidence 43211 11222 25789999999754 78899999999998875
No 122
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.08 E-value=0.00048 Score=67.77 Aligned_cols=261 Identities=11% Similarity=0.069 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHhcC--Chh-HHHHHHHHHHHhhhC-hhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhccc
Q 036338 99 QDEVKDIIRVAISK--NED-FSENLTKIVAFAKES-DENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNK 173 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~--~~~-~~~Al~~L~~la~~~-~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~ 173 (408)
++-++.|++.+.+. +.. +..|+..|..++++. +..-..... ..++.++.+|.+.. +..+...|+.+|.++..
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~--~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~- 203 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN--EILTAIIQGMRKEEPSNNVKLAATNALLNSLE- 203 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH--HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH--HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH-
Confidence 45788889999887 766 888999999998753 222111221 56788888888763 34455889999988653
Q ss_pred ccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchh--hHHhhhc-ChHHHHHHhcccCCCHHH
Q 036338 174 IEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSK--VKIAERD-GLLAETVKSLSLDSDRRL 250 (408)
Q Consensus 174 ~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~--~~i~~~~-g~i~~Lv~lL~~~~~~~~ 250 (408)
.-.+....... ..-.++.+...+.+. +.++|..++.+|..++...... ..+ . ++++.++..+++. +..+
T Consensus 204 -~~~~~~~~~~~--~~~l~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~~~~~~~---~~~l~~~~~~~~~~~-~~~v 275 (462)
T 1ibr_B 204 -FTKANFDKESE--RHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYM---GPALFAITIEAMKSD-IDEV 275 (462)
T ss_dssp -TTHHHHTSHHH--HHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCGGGCTTTT---TTTHHHHHHHHHHCS-SHHH
T ss_pred -HHHHhhhhhHH--HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCC-chHH
Confidence 11111000000 112366666667777 8999999999999998654321 111 3 6788888888876 8899
Q ss_pred HHHHHHHHHHhccCcchHH------------------HHHh---cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCC
Q 036338 251 IEASLSCLITISSSKRAKT------------------KLIN---HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGT 309 (408)
Q Consensus 251 ~~~A~~aL~~Ls~~~~n~~------------------~~~~---~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (408)
+..|+.++..++....... .+++ ...+|.|+..|... . .. -.+.+
T Consensus 276 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~----d--------~d--~~~~~ 341 (462)
T 1ibr_B 276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ----D--------EN--DDDDD 341 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCC----C--------SS--CCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhc----c--------cc--ccccc
Confidence 9999999999876431110 0111 34677777777542 0 00 00224
Q ss_pred cchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHH---HHHHHHH-------h-----------cCcHHHHHHHH
Q 036338 310 VLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLK---TAQEAVS-------S-----------SNVLTKILLLM 368 (408)
Q Consensus 310 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~---~~~~~~~-------~-----------~g~~~~Ll~ll 368 (408)
..++..|..+|..|+..-. ..+.. ..+|.+.+.|.. ..++.++ + ...++.|+..|
T Consensus 342 ~~~r~~a~~~L~~l~~~~~--~~~~~--~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l 417 (462)
T 1ibr_B 342 WNPCKAAGVCLMLLATCCE--DDIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM 417 (462)
T ss_dssp CSHHHHHHHHHHHHHHHTT--TTHHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGG
T ss_pred chHHHHHHHHHHHHHHhcc--HHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 5778888899988875211 11211 234434332211 2222221 1 23566666666
Q ss_pred hhcCCHHHHHHHHHHHHHHhh
Q 036338 369 QSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 369 ~~~~~~~~k~~A~~lL~~l~~ 389 (408)
+. ..+.+|..|..+|..+..
T Consensus 418 ~d-~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 418 KD-PSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp GC-SCHHHHHHHHHHHHHHHH
T ss_pred cC-CCHHHHHHHHHHHHHHHH
Confidence 54 468899999998888877
No 123
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.05 E-value=0.00013 Score=74.21 Aligned_cols=24 Identities=8% Similarity=0.210 Sum_probs=17.8
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 366 LLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 366 ~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
.-+..+.++.+|+.|..++..+..
T Consensus 564 ~~l~~d~d~~vr~~a~~al~~l~~ 587 (588)
T 1b3u_A 564 EKLTQDQDVDVKYFAQEALTVLSL 587 (588)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred HHHcCCCchhHHHHHHHHHHHhhc
Confidence 334567788999999888887653
No 124
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.05 E-value=1.1e-06 Score=72.32 Aligned_cols=118 Identities=18% Similarity=0.174 Sum_probs=82.1
Q ss_pred ChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhc
Q 036338 142 GLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAG 220 (408)
Q Consensus 142 G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~ 220 (408)
..++.|+.+|++++ ..+ ..|+.+|..+. + ..++.|+.+|++. +..+|..|+++|.++..
T Consensus 12 ~~~~~l~~~L~~~~~~vR--~~A~~~L~~~~----------------~-~~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~ 71 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVR--RDVSTALSRMG----------------D-EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD 71 (131)
T ss_dssp ---------CCSSCCCSS--SSCCSSTTSCS----------------S-TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS
T ss_pred ccHHHHHHHhcCCCHHHH--HHHHHHHHHhC----------------c-hHHHHHHHHHcCC-CHHHHHHHHHHHHhcCC
Confidence 56778888887766 444 55555544321 1 1268888999988 99999999999988652
Q ss_pred CcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCC
Q 036338 221 DADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNG 300 (408)
Q Consensus 221 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~ 300 (408)
...++.|+++|+++ ++.++..|+++|.++.. ..+++.|+.+|.++
T Consensus 72 -----------~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~------------- 116 (131)
T 1te4_A 72 -----------ERAVEPLIKLLEDD-SGFVRSGAARSLEQIGG----------ERVRAAMEKLAETG------------- 116 (131)
T ss_dssp -----------HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSC-------------
T ss_pred -----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC-------------
Confidence 34689999999887 88999999999998862 34689999999753
Q ss_pred CCCCCCCCCcchHHHHHHHHHH
Q 036338 301 NGNGSGNGTVLITEKALRLVEI 322 (408)
Q Consensus 301 ~~~~~~~~~~~~~~~a~~~L~~ 322 (408)
+..++..|+.+|..
T Consensus 117 --------~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 117 --------TGFARKVAVNYLET 130 (131)
T ss_dssp --------CTHHHHHHHHHGGG
T ss_pred --------CHHHHHHHHHHHHh
Confidence 77888888888754
No 125
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.02 E-value=3.1e-05 Score=80.14 Aligned_cols=178 Identities=16% Similarity=0.197 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
...+..+-+.|++.+.+ +.+++..|..+..-... .+.+.+.+++++.+.+ ......+...+.+++. .+.
T Consensus 12 ~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d-------~~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~--~~~ 81 (591)
T 2vgl_B 12 KGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKD-------VSSLFPDVVNCMQTDN-LELKKLVYLYLMNYAK--SQP 81 (591)
T ss_dssp SSHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCC-------CGGGHHHHHHTTSSSC-HHHHHHHHHHHHHHHH--HSH
T ss_pred CChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCC-------hHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcc--cCc
Confidence 45677888889988877 77888777655432221 1245677888887766 2222555555555543 222
Q ss_pred HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC 257 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a 257 (408)
+ ..+ -++..|.+-|.+. ++..|..|..+|.++. .+ .+. ...++.+.++|.+. ++.+++.|+.+
T Consensus 82 e---~~~-----l~~n~l~kdL~~~-n~~ir~~AL~~L~~i~-~~----~~~--~~l~~~l~~~L~d~-~~~VRk~A~~a 144 (591)
T 2vgl_B 82 D---MAI-----MAVNSFVKDCEDP-NPLIRALAVRTMGCIR-VD----KIT--EYLCEPLRKCLKDE-DPYVRKTAAVC 144 (591)
T ss_dssp H---HHH-----TTHHHHGGGSSSS-SHHHHHHHHHHHHTCC-SG----GGH--HHHHHHHHHHSSCS-CHHHHHHHHHH
T ss_pred h---HHH-----HHHHHHHHHcCCC-CHHHHHHHHHHHHcCC-hH----HHH--HHHHHHHHHHcCCC-ChHHHHHHHHH
Confidence 2 112 2366777778888 9999999988888775 22 132 24678899999986 99999999999
Q ss_pred HHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338 258 LITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT 326 (408)
Q Consensus 258 L~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~ 326 (408)
|.++...... .+.+.+.++.|..+|.++ ++.++..|+.+|..++..
T Consensus 145 l~~i~~~~p~--~~~~~~~~~~l~~lL~d~---------------------d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 145 VAKLHDINAQ--MVEDQGFLDSLRDLIADS---------------------NPMVVANAVAALSEISES 190 (591)
T ss_dssp HHHHHHSSCC--CHHHHHHHHHHHHTTSCS---------------------CHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhhChh--hcccccHHHHHHHHhCCC---------------------ChhHHHHHHHHHHHHHhh
Confidence 9999874332 222468899999999754 889999999999999864
No 126
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.96 E-value=8.5e-05 Score=68.16 Aligned_cols=193 Identities=11% Similarity=0.137 Sum_probs=128.9
Q ss_pred HHHHHhcCChh-HHHHHHHHHH-HhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHH-
Q 036338 105 IIRVAISKNED-FSENLTKIVA-FAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLM- 181 (408)
Q Consensus 105 Lv~~L~s~~~~-~~~Al~~L~~-la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~- 181 (408)
+.+.+++.+-. |.+|+..|.. +..++++....-.+....+..|...|....+..++..|+.+|..|+..... +.+.
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~-~~f~~ 99 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT-PGFSK 99 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT-TTSCH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-ccccH
Confidence 45567777765 9999999999 876544322101121145667778884333355568899999988752110 1111
Q ss_pred HHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHh
Q 036338 182 NLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITI 261 (408)
Q Consensus 182 ~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~L 261 (408)
... .-.++.++..+... ...++..+..+|..++..-+.-.....-...++.|+..|++. ++.+++.++.+|..+
T Consensus 100 ~y~----~~llp~ll~~l~dk-k~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~ 173 (249)
T 2qk1_A 100 DYV----SLVFTPLLDRTKEK-KPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNAS 173 (249)
T ss_dssp HHH----HHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHH
Confidence 111 23588899999887 889999999999888764321111110124788999999987 899999999999998
Q ss_pred ccCcch--HH--HHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 262 SSSKRA--KT--KLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 262 s~~~~n--~~--~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
...... .. ..+....+|.|..+|.+. ++.+++.|..+|..++.
T Consensus 174 ~~~~~~~~~~l~~~l~~~iip~l~~~l~D~---------------------~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 174 MKEEKDGYSTLQRYLKDEVVPIVIQIVNDT---------------------QPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHCCSCSHHHHHHHTTTHHHHHHHHHTCS---------------------SHHHHHHHHHHHHHHHH
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHhcCC---------------------CHHHHHHHHHHHHHHHH
Confidence 764332 11 122257889999999753 88999999999988864
No 127
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.94 E-value=0.00019 Score=80.33 Aligned_cols=250 Identities=10% Similarity=0.160 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
+..+..+++.+.+.+.+ |..|...|.+....+...-..-... ..++.|+..|.+.+ .+++..|+.+|..++....+
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~-~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~- 81 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSER-KVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKE- 81 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHH-HHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCH-
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHH-HHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCH-
Confidence 45688899999999988 8889999887765421100000111 46777888887554 44448899999988752222
Q ss_pred HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchh-------hHHhhhcChHHHHHHhcccCCCHHH
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSK-------VKIAERDGLLAETVKSLSLDSDRRL 250 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~-------~~i~~~~g~i~~Lv~lL~~~~~~~~ 250 (408)
+. .. .+++.|+..|.+. +..+|..|+.+|..++..-... .... ...+|.|+..+.+..+..+
T Consensus 82 ~~-~~-------~i~~~Ll~~l~d~-~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~--~~llp~L~~~l~~~~~~~~ 150 (1230)
T 1u6g_C 82 YQ-VE-------TIVDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSALAANVC--KKITGRLTSAIAKQEDVSV 150 (1230)
T ss_dssp HH-HH-------HHHHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC-----CCTHHHHH--HHHHHHHHHHHSCCSCHHH
T ss_pred HH-HH-------HHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCCcccccchHHHHH--HHHHHHHHHHHcCCCchHH
Confidence 21 22 3467788888887 8889999999999887543211 1122 4589999999984238899
Q ss_pred HHHHHHHHHHhccCcch-HHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHH
Q 036338 251 IEASLSCLITISSSKRA-KTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQG 329 (408)
Q Consensus 251 ~~~A~~aL~~Ls~~~~n-~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~ 329 (408)
+..|+.+|..++..... -.. .-...++.|+..|.++ +..+++.|+.+|..++.....
T Consensus 151 ~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~---------------------~~~vR~~a~~al~~l~~~~~~ 208 (1230)
T 1u6g_C 151 QLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSP---------------------RLAVRKRTIIALGHLVMSCGN 208 (1230)
T ss_dssp HHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCS---------------------SHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCC---------------------cHHHHHHHHHHHHHHHHhcCH
Confidence 99999999998852110 000 1133566777777653 678999999999999874221
Q ss_pred HHHHHhhcCchHHHHHHHHH-----------HHHHHHHh----------cCcHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Q 036338 330 RMEICQDAALLNGVVQKMLK-----------TAQEAVSS----------SNVLTKILLLMQSNCTPAVRQMSADLLKIFR 388 (408)
Q Consensus 330 ~~~~~~~~g~i~~lv~~l~~-----------~~~~~~~~----------~g~~~~Ll~ll~~~~~~~~k~~A~~lL~~l~ 388 (408)
.+. ...++.+++.|.. +....+.. ...++.++..++. ..+.+|+.|..++..+.
T Consensus 209 --~~~--~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d-~~~~vR~~a~~~l~~l~ 283 (1230)
T 1u6g_C 209 --IVF--VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNV-DDDELREYCIQAFESFV 283 (1230)
T ss_dssp ----C--TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSS-CCTTTHHHHHHHHHHHH
T ss_pred --HHH--HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Confidence 122 1346666665543 12222221 3456667666654 45668888888887776
Q ss_pred h
Q 036338 389 V 389 (408)
Q Consensus 389 ~ 389 (408)
.
T Consensus 284 ~ 284 (1230)
T 1u6g_C 284 R 284 (1230)
T ss_dssp H
T ss_pred H
Confidence 6
No 128
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.94 E-value=0.00034 Score=72.26 Aligned_cols=167 Identities=14% Similarity=0.150 Sum_probs=113.9
Q ss_pred HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH
Q 036338 101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH 179 (408)
Q Consensus 101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~ 179 (408)
-++.+.+.+.+.++. |..|+.++..+...+++ .+.+. +.++.|..+|.+.+ ..++..|+.+|..++. .+.+.
T Consensus 122 l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~-~~~~~l~~lL~d~d-~~V~~~A~~aL~~i~~--~~~~~ 194 (591)
T 2vgl_B 122 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQ-GFLDSLRDLIADSN-PMVVANAVAALSEISE--SHPNS 194 (591)
T ss_dssp HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHH-HHHHHHHHTTSCSC-HHHHHHHHHHHHHHTT--SCCSC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccc-cHHHHHHHHhCCCC-hhHHHHHHHHHHHHHh--hCCCc
Confidence 345577778877777 99999999999876554 33445 78999999998655 4455999999999986 33210
Q ss_pred HHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHH
Q 036338 180 LMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLI 259 (408)
Q Consensus 180 ~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~ 259 (408)
..... ..+.+..|+..|... ++-.+.....+|..++..++ .. ...+++.+..+|++. ++.++-.|++++.
T Consensus 195 -~~~~l--~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~--~~---~~~~l~~l~~~l~~~-~~~V~~ea~~~i~ 264 (591)
T 2vgl_B 195 -NLLDL--NPQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDD--RE---AQSICERVTPRLSHA-NSAVVLSAVKVLM 264 (591)
T ss_dssp -CSCCC--HHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSH--HH---HHHHHHHHTTCSCSS-TTHHHHHHHHHHH
T ss_pred -cchhc--cHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCCh--HH---HHHHHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence 00111 235677888888877 88888888887777764332 11 135788899999886 8899999999999
Q ss_pred Hhcc----CcchHHHHHhcCcHHHHHHHhc
Q 036338 260 TISS----SKRAKTKLINHKLITELGKLIT 285 (408)
Q Consensus 260 ~Ls~----~~~n~~~~~~~G~i~~Lv~lL~ 285 (408)
.+.. +++....+ -..++++|+.++.
T Consensus 265 ~l~~~~~~~~~~~~~~-~~~~~~~L~~L~~ 293 (591)
T 2vgl_B 265 KFLELLPKDSDYYNML-LKKLAPPLVTLLS 293 (591)
T ss_dssp HSCCSCCBTTBSHHHH-HHHTHHHHHHHTT
T ss_pred HHhhccCCCHHHHHHH-HHHHHHHHHHHhc
Confidence 9874 22322222 2345566666554
No 129
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.90 E-value=0.0008 Score=63.50 Aligned_cols=179 Identities=12% Similarity=0.106 Sum_probs=129.0
Q ss_pred HHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH
Q 036338 100 DEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ 178 (408)
Q Consensus 100 ~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~ 178 (408)
-.+..+++.|.+++.+ +..++..|+.+..++...-..++.. +|+..|+.+....+ ...+..++.+|.+|.. +.+.
T Consensus 118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~-~GL~~Li~vi~~~~-gN~q~Y~L~AL~~LM~--~v~G 193 (339)
T 3dad_A 118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHS-EGLSCLIRVGAAAD-HNYQSYILRALGQLML--FVDG 193 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHT-THHHHHHHHHTTSC-HHHHHHHHHHHHHHTT--SHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHh-ccHHHHHHHHHhcC-hHHHHHHHHHHHHHHh--cccc
Confidence 3577889999988766 9999999999555567777788888 99999999998776 3345999999999986 5544
Q ss_pred HHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcC----------hHHHHHHhcc--cCC
Q 036338 179 HLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDG----------LLAETVKSLS--LDS 246 (408)
Q Consensus 179 ~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g----------~i~~Lv~lL~--~~~ 246 (408)
+..++. ....|..++.++.+. ...+...|..+|..++...+....+...+= .+..|+.+|+ ++.
T Consensus 194 -m~gvvs--~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~ 269 (339)
T 3dad_A 194 -MLGVVA--HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGA 269 (339)
T ss_dssp -HHHHHH--CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSC
T ss_pred -ccchhC--CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCC
Confidence 345554 677899999999987 889999999999999887654433332111 2568999997 223
Q ss_pred CHHHHHHHHHHHHHhccC-c--chHHHHH----hcCcHHHHHHHhcc
Q 036338 247 DRRLIEASLSCLITISSS-K--RAKTKLI----NHKLITELGKLITD 286 (408)
Q Consensus 247 ~~~~~~~A~~aL~~Ls~~-~--~n~~~~~----~~G~i~~Lv~lL~~ 286 (408)
+.+.+..|...|-.+-.. + +.+..++ +.|.=..+..+|+.
T Consensus 270 D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~ 316 (339)
T 3dad_A 270 DPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGT 316 (339)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhc
Confidence 888888887766655332 2 3344444 34544566666765
No 130
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.83 E-value=4.6e-06 Score=68.49 Aligned_cols=120 Identities=17% Similarity=0.080 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
+..++.++..|++.+.. |..|++.|..+. + ..++.|+.+|++++ ..+...|+.+|.++. +
T Consensus 11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~-----------~--~~~~~L~~~L~d~~-~~vR~~A~~aL~~~~----~- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENKWVRRDVSTALSRMG-----------D--EAFEPLLESLSNED-WRIRGAAAWIIGNFQ----D- 71 (131)
T ss_dssp ----------CCSSCCCSSSSCCSSTTSCS-----------S--TTHHHHHHGGGCSC-HHHHHHHHHHHGGGC----S-
T ss_pred cccHHHHHHHhcCCCHHHHHHHHHHHHHhC-----------c--hHHHHHHHHHcCCC-HHHHHHHHHHHHhcC----C-
Confidence 44566778888877766 666776665432 1 23688999998765 444488998887763 1
Q ss_pred HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC 257 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a 257 (408)
...++.|+.+|++. +..+|..|+++|.++. . ..+++.|+.+|+++ ++.++..|+.+
T Consensus 72 -----------~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~----------~-~~a~~~L~~~l~d~-~~~vr~~A~~a 127 (131)
T 1te4_A 72 -----------ERAVEPLIKLLEDD-SGFVRSGAARSLEQIG----------G-ERVRAAMEKLAETG-TGFARKVAVNY 127 (131)
T ss_dssp -----------HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHC----------S-HHHHHHHHHHTTSC-CTHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC----------c-HHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 23477888999988 9999999999999875 2 35689999999886 88999999999
Q ss_pred HHHh
Q 036338 258 LITI 261 (408)
Q Consensus 258 L~~L 261 (408)
|.++
T Consensus 128 L~~i 131 (131)
T 1te4_A 128 LETH 131 (131)
T ss_dssp GGGC
T ss_pred HHhC
Confidence 8653
No 131
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.79 E-value=1.5e-05 Score=61.06 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=39.6
Q ss_pred cccCccccCCC-ceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 15 RCPISLDVMKS-PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 15 ~Cpi~~~~~~d-Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
.|++|.-.+.. -.++||+|.||..|+..|.+++...||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 69999888877 44679999999999999998888899999987654
No 132
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.71 E-value=0.00071 Score=66.56 Aligned_cols=191 Identities=14% Similarity=0.086 Sum_probs=123.4
Q ss_pred HHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHH
Q 036338 104 DIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMN 182 (408)
Q Consensus 104 ~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~ 182 (408)
.+.+.+.+.+.+ +..+++.|..++...+..-...... +.++.++..+++.+ ..+...|+..+..++. ...+ ...
T Consensus 221 ~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~-~l~~~~~~~~~~~~-~~v~~~a~~~l~~~~~--~~~~-~~~ 295 (462)
T 1ibr_B 221 VVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGP-ALFAITIEAMKSDI-DEVALQGIEFWSNVCD--EEMD-LAI 295 (462)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTT-THHHHHHHHHHCSS-HHHHHHHHHHHHHHHH--HHHH-HHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCc-hHHHHHHHHHHHHHHH--HHHH-HHH
Confidence 333344455556 8889999998887654322122222 67888888776655 3344788888877764 1100 000
Q ss_pred ------------------HHhccCcccHHHHHHHHhcC------CChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHH
Q 036338 183 ------------------LILKRDQDCLNSLLLVLKQQ------ESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAET 238 (408)
Q Consensus 183 ------------------~i~~~~~g~i~~Lv~lL~~~------~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~L 238 (408)
.+...-...+|.++..|... .+...|..|+.+|..|+..-. . .+. ..+++.+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~-~~~--~~~~~~l 371 (462)
T 1ibr_B 296 EASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-D-DIV--PHVLPFI 371 (462)
T ss_dssp HHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-T-THH--HHHHHHH
T ss_pred hcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-H-HHH--HHHHHHH
Confidence 00000023456666666432 134688999999999987544 2 222 3478888
Q ss_pred HHhcccCCCHHHHHHHHHHHHHhccCcc-hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHH
Q 036338 239 VKSLSLDSDRRLIEASLSCLITISSSKR-AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKAL 317 (408)
Q Consensus 239 v~lL~~~~~~~~~~~A~~aL~~Ls~~~~-n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 317 (408)
...|.+. +...+++|+.+|..++.+.. ....-.-..++|.|+.+|.++ ++.++..|+
T Consensus 372 ~~~l~~~-~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~---------------------~~~Vr~~a~ 429 (462)
T 1ibr_B 372 KEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP---------------------SVVVRDTAA 429 (462)
T ss_dssp HHHTTCS-SHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS---------------------CHHHHHHHH
T ss_pred HHHhcCC-ChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCC---------------------CHHHHHHHH
Confidence 8889886 89999999999999997543 110001256899999999864 789999999
Q ss_pred HHHHHHhC
Q 036338 318 RLVEILST 325 (408)
Q Consensus 318 ~~L~~L~~ 325 (408)
.+|.+++.
T Consensus 430 ~~l~~~~~ 437 (462)
T 1ibr_B 430 WTVGRICE 437 (462)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999985
No 133
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.70 E-value=7.8e-05 Score=54.67 Aligned_cols=47 Identities=15% Similarity=0.316 Sum_probs=38.1
Q ss_pred cccccCccccCCCceec-CCCCcccHhhHHHHHhcC-CCCCCCcccccC
Q 036338 13 FFRCPISLDVMKSPVSL-CTGVTYDRASIQRWLDSG-NNTCPATMQVLQ 59 (408)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~-~cgh~f~r~cI~~~~~~~-~~~CP~~~~~l~ 59 (408)
...|+||.+++..=..- .|||.|=..||.+||+.. ..+||.|+..+.
T Consensus 15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 35799999999753333 699999999999999863 378999998754
No 134
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.65 E-value=0.002 Score=68.67 Aligned_cols=197 Identities=10% Similarity=0.138 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHhcCC--hh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcC-------------c-chhhHH
Q 036338 99 QDEVKDIIRVAISKN--ED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNV-------------N-DVNMLK 161 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~--~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~-------------~-~~~~~e 161 (408)
+.-++.|+..+.+.+ .. +..++..|..++...+........ ..+|.++..|... + ...++.
T Consensus 497 ~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~ 574 (861)
T 2bpt_A 497 PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA--SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQS 574 (861)
T ss_dssp HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH--HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH--HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHH
Confidence 344667777777544 34 778888888887664432222222 4677788877642 1 122346
Q ss_pred HHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCCh-HHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHH
Q 036338 162 QVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESV-DSRIESLRLLEFIAGDADSKVKIAERDGLLAETVK 240 (408)
Q Consensus 162 ~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~-~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~ 240 (408)
.++.+|..++...++ .+... -...++.++..++.. +. .+|+.+..++..++........-.- ..++|.|+.
T Consensus 575 ~~~~~l~~l~~~~~~--~~~~~----~~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~ 646 (861)
T 2bpt_A 575 NILTVLAAVIRKSPS--SVEPV----ADMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLK 646 (861)
T ss_dssp HHHHHHHHHHHHCGG--GTGGG----HHHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh--hhHHH----HHHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHH
Confidence 677788777642111 11111 135678888888887 66 8899999999988764322111111 347899999
Q ss_pred hcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHH
Q 036338 241 SLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLV 320 (408)
Q Consensus 241 lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L 320 (408)
.|.+. +..++..|+.++..++..-.....-.-...++.++..|.++ +.+..+++.++.++
T Consensus 647 ~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~-------------------~~~~~vr~~~~~~l 706 (861)
T 2bpt_A 647 ALNQV-DSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNP-------------------NARRELKPAVLSVF 706 (861)
T ss_dssp HHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCT-------------------TCCTTHHHHHHHHH
T ss_pred Hhccc-cHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCc-------------------cccHhhhHHHHHHH
Confidence 99765 77899999999998876433211111245778888888753 23578999999999
Q ss_pred HHHhC
Q 036338 321 EILST 325 (408)
Q Consensus 321 ~~L~~ 325 (408)
..++.
T Consensus 707 ~~l~~ 711 (861)
T 2bpt_A 707 GDIAS 711 (861)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98876
No 135
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.60 E-value=0.0078 Score=62.37 Aligned_cols=190 Identities=13% Similarity=0.123 Sum_probs=121.7
Q ss_pred HHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHH
Q 036338 104 DIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMN 182 (408)
Q Consensus 104 ~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~ 182 (408)
..++.+.+.+.+ |.-.--.+..++..+++... -++..|.+-|.+++ ..+...|+.+|.++.. .+
T Consensus 74 ~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~------l~in~l~kDL~~~n-~~vr~lAL~~L~~i~~----~~---- 138 (618)
T 1w63_A 74 ECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL------LMTNCIKNDLNHST-QFVQGLALCTLGCMGS----SE---- 138 (618)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH------HHHHHHHHHHSCSS-SHHHHHHHHHHHHHCC----HH----
T ss_pred HHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH------HHHHHHHHhcCCCC-HhHHHHHHHHHHhcCC----HH----
Confidence 445566666655 43344455566655443222 23555777777665 2234889999999863 22
Q ss_pred HHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhc
Q 036338 183 LILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITIS 262 (408)
Q Consensus 183 ~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls 262 (408)
.+ ...++.+.++|.+. ++.+|..|+.++.++..... . +. .++++.|.++|.+. ++.++.+|+.+|..++
T Consensus 139 ~~----~~l~~~l~~~L~~~-~~~VRk~A~~al~~l~~~~p--~-~v--~~~~~~l~~lL~D~-d~~V~~~Al~~L~~i~ 207 (618)
T 1w63_A 139 MC----RDLAGEVEKLLKTS-NSYLRKKAALCAVHVIRKVP--E-LM--EMFLPATKNLLNEK-NHGVLHTSVVLLTEMC 207 (618)
T ss_dssp HH----HHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHCG--G-GG--GGGGGGTTTSTTCC-CHHHHHHHHHHHHHHC
T ss_pred HH----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHCh--H-HH--HHHHHHHHHHhCCC-CHhHHHHHHHHHHHHH
Confidence 11 35578899999998 99999999999999986432 1 22 25788888999886 9999999999999999
Q ss_pred cCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338 263 SSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT 326 (408)
Q Consensus 263 ~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~ 326 (408)
.......... ...+|.|+.+|.+-..++.+ +.. .-....++..+...+.+|..++..
T Consensus 208 ~~~~~~~~~~-~~~v~~l~~~L~~~~~~~~~---~~~---~~~~~~~~~~q~~il~~L~~l~~~ 264 (618)
T 1w63_A 208 ERSPDMLAHF-RKLVPQLVRILKNLIMSGYS---PEH---DVSGISDPFLQVRILRLLRILGRN 264 (618)
T ss_dssp CSHHHHHHHH-HTTHHHHHHHHHHHHHSCCC---TTT---CSSSSSCHHHHHHHHHHHHHHTTT
T ss_pred HhChHHHHHH-HHHHHHHHHHHHHHHcCCCC---ccc---cccCCCCChHHHHHHHHHHHhCCC
Confidence 8643221112 36788888887631000000 000 000023678888899999999864
No 136
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.59 E-value=0.002 Score=66.79 Aligned_cols=174 Identities=13% Similarity=0.124 Sum_probs=119.9
Q ss_pred HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchH
Q 036338 101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQ 178 (408)
Q Consensus 101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~ 178 (408)
.+..+-+.+++.+.. +.+++..|-.+..-.... . -+....++++.+.+ ..+ .-.--.+..++. .+.+
T Consensus 35 e~~~ir~~l~~~~~~~k~~~l~kli~~~~~G~d~------~-~~~~~vik~~~s~~~~~K--rl~Yl~~~~~~~--~~~e 103 (618)
T 1w63_A 35 ECAAIRSSFREEDNTYRCRNVAKLLYMHMLGYPA------H-FGQLECLKLIASQKFTDK--RIGYLGAMLLLD--ERQD 103 (618)
T ss_dssp HHHHHHHHHTTTCTTTHHHHHHHHHHHHHTTCCC------G-GGHHHHHHHHHSSSHHHH--HHHHHHHHHHCC--CCHH
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHcCCCC------c-chHHHHHHHHcCCchHHH--HHHHHHHHHHhC--CCcH
Confidence 344555567766655 777887776654322111 1 34555678888766 333 444445556654 2322
Q ss_pred HHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHH
Q 036338 179 HLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCL 258 (408)
Q Consensus 179 ~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL 258 (408)
...+ ++..|.+-|.++ ++..|..|+++|.++.. + .+. ...++.+.++|++. ++.+++.|+.++
T Consensus 104 --~~~l------~in~l~kDL~~~-n~~vr~lAL~~L~~i~~-~----~~~--~~l~~~l~~~L~~~-~~~VRk~A~~al 166 (618)
T 1w63_A 104 --VHLL------MTNCIKNDLNHS-TQFVQGLALCTLGCMGS-S----EMC--RDLAGEVEKLLKTS-NSYLRKKAALCA 166 (618)
T ss_dssp --HHHH------HHHHHHHHHSCS-SSHHHHHHHHHHHHHCC-H----HHH--HHHHHHHHHHHHSC-CHHHHHHHHHHH
T ss_pred --HHHH------HHHHHHHhcCCC-CHhHHHHHHHHHHhcCC-H----HHH--HHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 1122 377888889988 99999999999999973 2 233 35789999999987 999999999999
Q ss_pred HHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCH
Q 036338 259 ITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTK 327 (408)
Q Consensus 259 ~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~ 327 (408)
.++...... +++ +.++.|..+|.++ ++.++..|+.+|..++...
T Consensus 167 ~~l~~~~p~---~v~-~~~~~l~~lL~D~---------------------d~~V~~~Al~~L~~i~~~~ 210 (618)
T 1w63_A 167 VHVIRKVPE---LME-MFLPATKNLLNEK---------------------NHGVLHTSVVLLTEMCERS 210 (618)
T ss_dssp HHHHHHCGG---GGG-GGGGGTTTSTTCC---------------------CHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHChH---HHH-HHHHHHHHHhCCC---------------------CHhHHHHHHHHHHHHHHhC
Confidence 999874321 222 6777788888643 8899999999999998764
No 137
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.44 E-value=0.028 Score=59.89 Aligned_cols=258 Identities=11% Similarity=0.064 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHhcC--Chh-HHHHHHHHHHHhhhC-hhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhccc
Q 036338 99 QDEVKDIIRVAISK--NED-FSENLTKIVAFAKES-DENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNK 173 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~--~~~-~~~Al~~L~~la~~~-~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~ 173 (408)
++-++.+++.+.+. +.. +..++..|..++... ++.-.... +..++.+...+.++. +..+...|+.+|..+..
T Consensus 127 ~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~- 203 (876)
T 1qgr_A 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSLE- 203 (876)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGH--HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG-
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHH--HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH-
Confidence 45678888888887 766 888999999988653 22111111 156777888887763 34455889999988764
Q ss_pred ccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcch--hhHHhhhcChHHHHHHhcccCCCHHHH
Q 036338 174 IEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADS--KVKIAERDGLLAETVKSLSLDSDRRLI 251 (408)
Q Consensus 174 ~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~--~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 251 (408)
.-......... ....++.+...+.+. +.++|..++.+|..+...... ...+ . ..+++.++..+.+. +..++
T Consensus 204 -~~~~~~~~~~~--~~~il~~l~~~~~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~-~~l~~~~~~~~~~~-~~~v~ 276 (876)
T 1qgr_A 204 -FTKANFDKESE--RHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLYYQYMETYM-G-PALFAITIEAMKSD-IDEVA 276 (876)
T ss_dssp -GCHHHHTSHHH--HHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSGGGCHHHH-T-TTHHHHHHHHHTCS-SHHHH
T ss_pred -HHHHHHHhHHH--HHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhHHHHHHHH-H-HHHHHHHHHHhcCC-chHHH
Confidence 11111010000 123577777777777 889999999999998864322 1222 1 26788888888775 78899
Q ss_pred HHHHHHHHHhccCcc---------------------hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCc
Q 036338 252 EASLSCLITISSSKR---------------------AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTV 310 (408)
Q Consensus 252 ~~A~~aL~~Ls~~~~---------------------n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (408)
..|+.++.+++.... +..+-.-...+|.++..|... .. + ..+.+.
T Consensus 277 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~----~~--------d--~~~~~~ 342 (876)
T 1qgr_A 277 LQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQ----DE--------N--DDDDDW 342 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCC----CS--------S--CCTTCC
T ss_pred HHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcc----cc--------c--cccccc
Confidence 999999998875421 000001134677888888642 00 0 002345
Q ss_pred chHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHH-------HHHHHHH-------h-----------cCcHHHHH
Q 036338 311 LITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLK-------TAQEAVS-------S-----------SNVLTKIL 365 (408)
Q Consensus 311 ~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~-------~~~~~~~-------~-----------~g~~~~Ll 365 (408)
.++..|..+|..|+..-. . ..++.++..+.. ..++.++ . ...++.++
T Consensus 343 ~~r~~a~~~l~~l~~~~~--~------~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~ 414 (876)
T 1qgr_A 343 NPCKAAGVCLMLLATCCE--D------DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLI 414 (876)
T ss_dssp CHHHHHHHHHHHHHHHHG--G------GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCc--H------hhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 778888888888865321 1 123333333322 2222211 0 12355566
Q ss_pred HHHhhcCCHHHHHHHHHHHHHHhh
Q 036338 366 LLMQSNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 366 ~ll~~~~~~~~k~~A~~lL~~l~~ 389 (408)
..|. +..+.+|..|..+|..+..
T Consensus 415 ~~l~-d~~~~vr~~a~~~l~~~~~ 437 (876)
T 1qgr_A 415 ELMK-DPSVVVRDTAAWTVGRICE 437 (876)
T ss_dssp HHHT-CSSHHHHHHHHHHHHHHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHHHH
Confidence 6664 4568889999888887776
No 138
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.39 E-value=0.00019 Score=50.42 Aligned_cols=48 Identities=19% Similarity=0.276 Sum_probs=39.6
Q ss_pred CcccccCccccCCCceecCCC--C---cccHhhHHHHHhc-CCCCCCCcccccC
Q 036338 12 SFFRCPISLDVMKSPVSLCTG--V---TYDRASIQRWLDS-GNNTCPATMQVLQ 59 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~cg--h---~f~r~cI~~~~~~-~~~~CP~~~~~l~ 59 (408)
+...|.||++-..+|.+.||. + .|=+.||.+|+.. ++.+||+|+.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 445799999988889888865 4 7889999999975 5678999998764
No 139
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.37 E-value=0.0021 Score=68.66 Aligned_cols=188 Identities=10% Similarity=0.109 Sum_probs=122.9
Q ss_pred HHHHHHHHHhcC-------Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcc
Q 036338 101 EVKDIIRVAISK-------NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILN 172 (408)
Q Consensus 101 ~i~~Lv~~L~s~-------~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~ 172 (408)
-++.++..+... +.. +..|...|..++...+ ..+.. ..++.+...+.+.+ .+..+.|+.+|..++.
T Consensus 325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~~~--~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~~ 398 (861)
T 2bpt_A 325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG---NHILE--PVLEFVEQNITADN-WRNREAAVMAFGSIMD 398 (861)
T ss_dssp HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG---GGGHH--HHHHHHHHHTTCSS-HHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc---HhHHH--HHHHHHHHHcCCCC-hhHHHHHHHHHHHHHc
Confidence 455666666542 123 6678888888876422 12222 35666666666555 3345899999999986
Q ss_pred cccch-HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchh---hHHhhhcChHHHHHHhcccCCCH
Q 036338 173 KIEDQ-QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSK---VKIAERDGLLAETVKSLSLDSDR 248 (408)
Q Consensus 173 ~~~~~-~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~---~~i~~~~g~i~~Lv~lL~~~~~~ 248 (408)
... ..+...+ ...++.|+..+.+. +..+|..++++|..++..-... .... ..+++.|++.|++ ++
T Consensus 399 --~~~~~~~~~~l----~~il~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~~~l~~--~~ 467 (861)
T 2bpt_A 399 --GPDKVQRTYYV----HQALPSILNLMNDQ-SLQVKETTAWCIGRIADSVAESIDPQQHL--PGVVQACLIGLQD--HP 467 (861)
T ss_dssp --SSCHHHHHHHH----HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHHHHHHHHTS--CH
T ss_pred --CCCHHHHHHHH----HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHHHHHHHhcc--Ch
Confidence 322 2223333 25788888888888 9999999999999998642211 1111 3578999999976 38
Q ss_pred HHHHHHHHHHHHhccCcc-----hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHH
Q 036338 249 RLIEASLSCLITISSSKR-----AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEIL 323 (408)
Q Consensus 249 ~~~~~A~~aL~~Ls~~~~-----n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L 323 (408)
.++..|+++|.+++..-. .-.... ...++.|+.++.+. +.+..++..++.+|..+
T Consensus 468 ~v~~~a~~al~~l~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~-------------------d~~~~vr~~a~~al~~l 527 (861)
T 2bpt_A 468 KVATNCSWTIINLVEQLAEATPSPIYNFY-PALVDGLIGAANRI-------------------DNEFNARASAFSALTTM 527 (861)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSCGGGGGH-HHHHHHHHHHHTCS-------------------CCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccchhhHHHH-HHHHHHHHHHHhCc-------------------CcchHHHHHHHHHHHHH
Confidence 899999999999876311 110111 34577888888753 23467888899999988
Q ss_pred hC
Q 036338 324 ST 325 (408)
Q Consensus 324 ~~ 325 (408)
+.
T Consensus 528 ~~ 529 (861)
T 2bpt_A 528 VE 529 (861)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 140
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.29 E-value=0.0068 Score=64.71 Aligned_cols=193 Identities=13% Similarity=0.069 Sum_probs=123.5
Q ss_pred HHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH--
Q 036338 102 VKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ-- 178 (408)
Q Consensus 102 i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~-- 178 (408)
++.+.+.+...+.+ +..++..|..++...+..-...... ..++.++..+.+.+ ..+...|+..+..++. ....
T Consensus 219 l~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~l~~~~~~~~~~~~-~~v~~~al~~l~~l~~--~~~~~~ 294 (876)
T 1qgr_A 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGP-ALFAITIEAMKSDI-DEVALQGIEFWSNVCD--EEMDLA 294 (876)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTT-THHHHHHHHHTCSS-HHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHhcCCc-hHHHHHHHHHHHHHHH--HHHhHh
Confidence 33344444445555 7788899988887654432222223 67888888776554 3344778777777764 1100
Q ss_pred ---H--H----------HHHHhccCcccHHHHHHHHhcC------CChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHH
Q 036338 179 ---H--L----------MNLILKRDQDCLNSLLLVLKQQ------ESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAE 237 (408)
Q Consensus 179 ---~--~----------~~~i~~~~~g~i~~Lv~lL~~~------~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~ 237 (408)
. . ...+...-...++.++..|... .+...|..|+.+|..++.... ..+. ..+++.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~--~~~l~~ 370 (876)
T 1qgr_A 295 IEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV--PHVLPF 370 (876)
T ss_dssp HHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGH--HHHHHH
T ss_pred hhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--HhhH--HHHHHH
Confidence 0 0 0000000023466777777531 156788999999999986533 1222 356788
Q ss_pred HHHhcccCCCHHHHHHHHHHHHHhccCcc-h-HHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHH
Q 036338 238 TVKSLSLDSDRRLIEASLSCLITISSSKR-A-KTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEK 315 (408)
Q Consensus 238 Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~-n-~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (408)
+...+.+. +..++++|+.+|.+++.... . .... -..++|.|+..|.++ +..++..
T Consensus 371 l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~---------------------~~~vr~~ 427 (876)
T 1qgr_A 371 IKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDP---------------------SVVVRDT 427 (876)
T ss_dssp HHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCS---------------------SHHHHHH
T ss_pred HHHHccCC-ChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCC---------------------CHHHHHH
Confidence 88888876 89999999999999998643 2 2222 245889999999754 7889999
Q ss_pred HHHHHHHHhC
Q 036338 316 ALRLVEILST 325 (408)
Q Consensus 316 a~~~L~~L~~ 325 (408)
|+.+|.+++.
T Consensus 428 a~~~l~~~~~ 437 (876)
T 1qgr_A 428 AAWTVGRICE 437 (876)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999985
No 141
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.24 E-value=0.0057 Score=55.10 Aligned_cols=146 Identities=16% Similarity=0.132 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHh-cCChh-HHHHHHHHHHHhhhChh-hhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhccccc
Q 036338 99 QDEVKDIIRVAI-SKNED-FSENLTKIVAFAKESDE-NKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIE 175 (408)
Q Consensus 99 ~~~i~~Lv~~L~-s~~~~-~~~Al~~L~~la~~~~~-~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~ 175 (408)
..-++.|...+. ..+.. +..|+..|..++..-.. ....+. -.+|.|+..+.+.. ..+.+.|..+|..+.. .
T Consensus 55 ~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~---~ilp~ll~~l~d~~-~~vr~~a~~aL~~~~~--~ 128 (242)
T 2qk2_A 55 GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS---ACVPSLLEKFKEKK-PNVVTALREAIDAIYA--S 128 (242)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH---HHHHHHHHGGGCCC-HHHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHHHHHcCCC-HHHHHHHHHHHHHHHH--c
Confidence 455677777884 77777 88899999999864221 112222 46888888888765 3344888888888764 1
Q ss_pred chHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc--c--hhhHHhhhcChHHHHHHhcccCCCHHHH
Q 036338 176 DQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA--D--SKVKIAERDGLLAETVKSLSLDSDRRLI 251 (408)
Q Consensus 176 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~--~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 251 (408)
. . +. ..++.|...|++. +..+|..++..|..+.... + ....+ ...+|.|+.+|.+. +.++|
T Consensus 129 ~-~-~~--------~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~~~~~~l---~~l~p~l~~~l~D~-~~~VR 193 (242)
T 2qk2_A 129 T-S-LE--------AQQESIVESLSNK-NPSVKSETALFIARALTRTQPTALNKKLL---KLLTTSLVKTLNEP-DPTVR 193 (242)
T ss_dssp S-C-HH--------HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGGCCHHHH---HHHHHHHHHHHTSS-CHHHH
T ss_pred C-C-HH--------HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCCccHHHH---HHHHHHHHHHhcCC-ChHHH
Confidence 1 1 11 2467788889988 9999999999999965442 2 12222 35799999999886 89999
Q ss_pred HHHHHHHHHhccCc
Q 036338 252 EASLSCLITISSSK 265 (408)
Q Consensus 252 ~~A~~aL~~Ls~~~ 265 (408)
.+|..+|..++..-
T Consensus 194 ~~A~~~l~~l~~~v 207 (242)
T 2qk2_A 194 DSSAEALGTLIKLM 207 (242)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999988643
No 142
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.24 E-value=0.052 Score=46.74 Aligned_cols=182 Identities=15% Similarity=0.239 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHhcCCh-hHHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 99 QDEVKDIIRVAISKNE-DFSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~-~~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
.+-+..+++.|...-= -|.+|+..|..+++..++..+-+++ .|+.+++.+.....-.+...+++.++. -.+
T Consensus 31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~------kL~vm~~ksEaIpltqeIa~a~G~la~--i~P 102 (253)
T 2db0_A 31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLK------KLFSLLKKSEAIPLTQEIAKAFGQMAK--EKP 102 (253)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHH------HHHHHHHHCCSHHHHHHHHHHHHHHHH--HCH
T ss_pred HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHH------HHHHHHhhcccCchHHHHHHHHhHHHH--hCH
Confidence 5556667776654432 2889999999999887766555444 367776655522222556677777765 222
Q ss_pred HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC 257 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a 257 (408)
+.+ .+.+|.+..-.+-| ++..|.+...+|..++.... ..+ .+++.-+..+|.++ +..-+-.|+..
T Consensus 103 ----e~v----~~vVp~lfanyrig-d~kikIn~~yaLeeIaranP--~l~---~~v~rdi~smltsk-d~~Dkl~aLnF 167 (253)
T 2db0_A 103 ----ELV----KSMIPVLFANYRIG-DEKTKINVSYALEEIAKANP--MLM---ASIVRDFMSMLSSK-NREDKLTALNF 167 (253)
T ss_dssp ----HHH----HHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCH--HHH---HHHHHHHHHHTSCS-SHHHHHHHHHH
T ss_pred ----HHH----HhhHHHHHHHHhcC-CccceecHHHHHHHHHHhCh--HHH---HHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 233 25677787777889 99999999999999986432 112 34677888999876 76666666666
Q ss_pred HHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC-HH
Q 036338 258 LITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT-KQ 328 (408)
Q Consensus 258 L~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~-~~ 328 (408)
+..+.. |..+-+.. -+|.|..||.+. +..+...|+.+|.+|+.. +.
T Consensus 168 i~alGe---n~~~yv~P-fLprL~aLL~D~---------------------deiVRaSaVEtL~~lA~~npk 214 (253)
T 2db0_A 168 IEAMGE---NSFKYVNP-FLPRIINLLHDG---------------------DEIVRASAVEALVHLATLNDK 214 (253)
T ss_dssp HHTCCT---TTHHHHGG-GHHHHHGGGGCS---------------------SHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHhc---cCccccCc-chHHHHHHHcCc---------------------chhhhHHHHHHHHHHHHcCHH
Confidence 666554 44444433 679999999854 889999999999999974 54
No 143
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.23 E-value=5.8e-05 Score=70.97 Aligned_cols=46 Identities=17% Similarity=0.430 Sum_probs=37.2
Q ss_pred ccccCccccCCC----cee----cCCCCcccHhhHHHHHhcC-C---------CCCCCcccccC
Q 036338 14 FRCPISLDVMKS----PVS----LCTGVTYDRASIQRWLDSG-N---------NTCPATMQVLQ 59 (408)
Q Consensus 14 ~~Cpi~~~~~~d----Pv~----~~cgh~f~r~cI~~~~~~~-~---------~~CP~~~~~l~ 59 (408)
.-|+||..++.+ |-. ..|||.|-..||.+|+.+. . ..||.|+++++
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred ccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 469999999998 543 3699999999999999752 1 46999998764
No 144
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.15 E-value=0.008 Score=53.72 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
...++.+++.+++.+.. ..+|+++|..+..+.+-....+... +..|.++++++.+. ..++|+..|..+.. -.
T Consensus 74 e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl---~~aL~dlik~~~~i-l~~eaae~Lgklkv--~~- 146 (265)
T 3b2a_A 74 ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKA---AKTLVSLLESPDDM-MRIETIDVLSKLQP--LE- 146 (265)
T ss_dssp HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHH---HHHHHHHTTSCCHH-HHHHHHHHHHHCCB--SC-
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHH---HHHHHHHhcCCCch-HHHHHHHHhCcCCc--cc-
Confidence 44566777777777665 7889999999988876666666644 66788888877632 34888888888743 12
Q ss_pred HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC 257 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a 257 (408)
. ..+.+..+.+++.+. +.++|..|..++.+++...+.+..+ .+++..+-.+|++. |+.+++-|+.+
T Consensus 147 ~---------~~~V~~~l~sLl~Sk-d~~vK~agl~~L~eia~~S~D~~i~---~~I~~eI~elL~~e-D~~l~e~aLd~ 212 (265)
T 3b2a_A 147 D---------SKLVRTYINELVVSP-DLYTKVAGFCLFLNMLNSSADSGHL---TLILDEIPSLLQND-NEFIVELALDV 212 (265)
T ss_dssp C---------CHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHGGGCSSCCCG---GGTTTTHHHHHTCS-CHHHHHHHHHH
T ss_pred c---------hHHHHHHHHHHHhCC-ChhHHHHHHHHHHHhhcccCCHHHH---HHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 1 234466788888888 9999999999999999765544443 23556677888887 99999999999
Q ss_pred HHHhccCc
Q 036338 258 LITISSSK 265 (408)
Q Consensus 258 L~~Ls~~~ 265 (408)
|..+.+.+
T Consensus 213 Le~ils~p 220 (265)
T 3b2a_A 213 LEKALSFP 220 (265)
T ss_dssp HHHHTTSC
T ss_pred HHHHHcCc
Confidence 99998865
No 145
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.12 E-value=0.011 Score=55.70 Aligned_cols=163 Identities=12% Similarity=0.131 Sum_probs=117.8
Q ss_pred HHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchh
Q 036338 146 MLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSK 225 (408)
Q Consensus 146 ~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~ 225 (408)
.+++-|.+.+ .+.+..++.-|..+.. .|..-..+.| ..+++..|++....+ +...+.++..++.+|-...+..
T Consensus 122 ~iiekL~~~~-~~~lr~aLfsLk~~~q--~D~~Fa~EFI---~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v~Gm 194 (339)
T 3dad_A 122 AILEKLYSSS-GPELRRSLFSLKQIFQ--EDKDLVPEFV---HSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLFVDGM 194 (339)
T ss_dssp HHHHHHHHCC-HHHHHHHHHHHHHHHH--TCTTHHHHHH---HTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHhcCC-cHHHHHHHHHHHHHhh--cchHHHHHHH---HhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhccccc
Confidence 4555566554 2234777777776332 2444446677 678899999999998 9999999999999998887777
Q ss_pred hHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc-hHHHHHhc-C---------cHHHHHHHhccCCCCCCCC
Q 036338 226 VKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR-AKTKLINH-K---------LITELGKLITDGHNGNGSG 294 (408)
Q Consensus 226 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~-n~~~~~~~-G---------~i~~Lv~lL~~~~~~~~~~ 294 (408)
..+..+..+|.-|+.++.+. +..+.+.|+..|..++...+ |...+.++ . -...|+.+|.+.
T Consensus 195 ~gvvs~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~------- 266 (339)
T 3dad_A 195 LGVVAHSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEK------- 266 (339)
T ss_dssp HHHHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTT-------
T ss_pred cchhCCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhcc-------
Confidence 66665577999999999975 89999999999999988765 44333322 1 277999999742
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHHHHHHhC---CHHHHHHHH
Q 036338 295 NGNGNGNGNGSGNGTVLITEKALRLVEILST---TKQGRMEIC 334 (408)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~---~~~~~~~~~ 334 (408)
.+.+..++.+|+..+..+-. +++.+..++
T Consensus 267 -----------~~~D~elq~~amtLIN~lL~~apd~d~~~di~ 298 (339)
T 3dad_A 267 -----------NGADPELLVYTVTLINKTLAALPDQDSFYDVT 298 (339)
T ss_dssp -----------TSCCHHHHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred -----------CCCCHHHHHHHHHHHHHHHhcCCChhHHHHHH
Confidence 02478999998888777643 234454444
No 146
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.11 E-value=0.0002 Score=55.96 Aligned_cols=34 Identities=12% Similarity=0.142 Sum_probs=29.6
Q ss_pred CcccccCccc-cCCCcee--cCCCCcccHhhHHHHHh
Q 036338 12 SFFRCPISLD-VMKSPVS--LCTGVTYDRASIQRWLD 45 (408)
Q Consensus 12 ~~~~Cpi~~~-~~~dPv~--~~cgh~f~r~cI~~~~~ 45 (408)
+++.|+||.+ ++.+||+ +.|||+||+.|++.|+.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4678999996 5899999 89999999999999544
No 147
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.87 E-value=0.11 Score=53.73 Aligned_cols=193 Identities=13% Similarity=0.194 Sum_probs=118.0
Q ss_pred HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhh----cCc------------chhhHHHH
Q 036338 101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILS----NVN------------DVNMLKQV 163 (408)
Q Consensus 101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~----s~~------------~~~~~e~A 163 (408)
-++.+.+.|...++. +..|+..|..++..++.... ..+|.+++.|. ... ++=.+-..
T Consensus 188 ~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~------~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~i 261 (621)
T 2vgl_A 188 WTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFK------TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKL 261 (621)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHT------THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHH
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHH------HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHH
Confidence 345566677777777 88888999998887665311 34555554443 211 12234556
Q ss_pred HHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCC--------Ch--HHHHHHHHHHHHhhcCcchhhHHhhhcC
Q 036338 164 IRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQE--------SV--DSRIESLRLLEFIAGDADSKVKIAERDG 233 (408)
Q Consensus 164 ~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~--------~~--~~~~~Aa~~L~~La~~~~~~~~i~~~~g 233 (408)
+..|..++. .++...+..+. ..+..++..+.... +. .+.-.++.++..+...+ .+. ..
T Consensus 262 l~ll~~~~~--~~d~~~~~~l~----~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~----~~~--~~ 329 (621)
T 2vgl_A 262 LRLLQCYPP--PEDPAVRGRLT----ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEP----NLL--VR 329 (621)
T ss_dssp HHHGGGSSS--CSSHHHHHHHH----HHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCH----HHH--HH
T ss_pred HHHHHHhCC--CCCHHHHHHHH----HHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcH----HHH--HH
Confidence 667766664 23222233331 23444443322110 22 55666777777775322 222 23
Q ss_pred hHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhc-cCCCCCCCCCCCCCCCCCCCCCCCcch
Q 036338 234 LLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLIT-DGHNGNGSGNGNGNGNGNGSGNGTVLI 312 (408)
Q Consensus 234 ~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (408)
++..|.++|.+. ++.++-.|+.+|..++...... .++ ....+.++..|. ++ +..+
T Consensus 330 ~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~~-~~~-~~~~~~i~~~L~~d~---------------------d~~I 385 (621)
T 2vgl_A 330 ACNQLGQFLQHR-ETNLRYLALESMCTLASSEFSH-EAV-KTHIETVINALKTER---------------------DVSV 385 (621)
T ss_dssp HHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTTH-HHH-HTTHHHHHHHHTTCC---------------------CHHH
T ss_pred HHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCcH-HHH-HHHHHHHHHHhccCC---------------------CHhH
Confidence 678899999876 8899999999999998765332 223 235677788887 53 7889
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHhh
Q 036338 313 TEKALRLVEILSTTKQGRMEICQD 336 (408)
Q Consensus 313 ~~~a~~~L~~L~~~~~~~~~~~~~ 336 (408)
+..|+.+|..|+. +.|...++.+
T Consensus 386 r~~aL~lL~~l~~-~~Nv~~Iv~e 408 (621)
T 2vgl_A 386 RQRAVDLLYAMCD-RSNAQQIVAE 408 (621)
T ss_dssp HHHHHHHHHHHCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-hhhHHHHHHH
Confidence 9999999999985 5666666543
No 148
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.018 Score=52.49 Aligned_cols=153 Identities=8% Similarity=0.089 Sum_probs=102.1
Q ss_pred HHHHHHHHHH-hcCChh-HHHHHHHHHHHhhhC--hhhh-hhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccc
Q 036338 100 DEVKDIIRVA-ISKNED-FSENLTKIVAFAKES--DENK-TFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKI 174 (408)
Q Consensus 100 ~~i~~Lv~~L-~s~~~~-~~~Al~~L~~la~~~--~~~r-~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~ 174 (408)
+.+..|.+.+ +..+.. +..|+..|..++.+- +... .+.. -.+|.++..+++.. ..+++.+..+|..++.
T Consensus 60 ~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~---~llp~ll~~l~dkk-~~V~~aa~~al~~i~~-- 133 (249)
T 2qk1_A 60 NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS---LVFTPLLDRTKEKK-PSVIEAIRKALLTICK-- 133 (249)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH---HHHHHHHHGGGCCC-HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH---HHHHHHHHHHcCCC-HHHHHHHHHHHHHHHH--
Confidence 4566777778 566666 888999999998542 1222 2222 35888888887655 2344666667766653
Q ss_pred cchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchh-hHH-hhh-cChHHHHHHhcccCCCHHHH
Q 036338 175 EDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSK-VKI-AER-DGLLAETVKSLSLDSDRRLI 251 (408)
Q Consensus 175 ~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~-~~i-~~~-~g~i~~Lv~lL~~~~~~~~~ 251 (408)
.-++ ......-...++.|+..|++. +..+|+.++..|..+....... ..+ -.- ...+|.|.+++.+. ++++|
T Consensus 134 ~~~~---~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR 208 (249)
T 2qk1_A 134 YYDP---LASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT-QPAIR 208 (249)
T ss_dssp HSCT---TCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS-SHHHH
T ss_pred Hccc---cccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCC-CHHHH
Confidence 1110 000000014578888889998 9999999999999888654321 222 122 46899999999886 99999
Q ss_pred HHHHHHHHHhcc
Q 036338 252 EASLSCLITISS 263 (408)
Q Consensus 252 ~~A~~aL~~Ls~ 263 (408)
.+|..+|..++.
T Consensus 209 ~aA~~~l~~i~~ 220 (249)
T 2qk1_A 209 TIGFESFAILIK 220 (249)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 149
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.78 E-value=0.041 Score=59.12 Aligned_cols=98 Identities=17% Similarity=0.158 Sum_probs=72.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHH
Q 036338 192 LNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKL 271 (408)
Q Consensus 192 i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~ 271 (408)
|+.|+..+.+..+..+|..|+..|..++..++ ..++.++.+|.+..++.+|..|+.||..++.+..+..
T Consensus 579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~-- 647 (963)
T 4ady_A 579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS-- 647 (963)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHH--
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHH--
Confidence 55566666544377888888888888775542 2467788866554589999999999999987665432
Q ss_pred HhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 272 INHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 272 ~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
+|+.|..++.+ .+..+...|+-+|..+..
T Consensus 648 ----aid~L~~L~~D---------------------~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 648 ----AIDVLDPLTKD---------------------PVDFVRQAAMIALSMILI 676 (963)
T ss_dssp ----HHHHHHHHHTC---------------------SSHHHHHHHHHHHHHHST
T ss_pred ----HHHHHHHHccC---------------------CCHHHHHHHHHHHHHHhc
Confidence 56677777764 488999999999999864
No 150
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.71 E-value=0.018 Score=64.33 Aligned_cols=172 Identities=13% Similarity=0.120 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
...++.+++.|.+.+.. |..|+..|..++...+. ..+. .+++.|+..|.+++ .+++..|..+|..++......
T Consensus 47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~~---~i~~~Ll~~l~d~~-~~vR~~a~~~L~~i~~~l~~~ 120 (1230)
T 1u6g_C 47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQVE---TIVDTLCTNMLSDK-EQLRDISSIGLKTVIGELPPA 120 (1230)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHHH---HHHHHHHHHTTCSS-SHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHHH---HHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCCc
Confidence 34577788888877777 88899999999865433 1111 45677888877655 233477777887776421111
Q ss_pred H---HHHHHHhccCcccHHHHHHHHh-cCCChHHHHHHHHHHHHhhcCcch-hhHHhhhcChHHHHHHhcccCCCHHHHH
Q 036338 178 Q---HLMNLILKRDQDCLNSLLLVLK-QQESVDSRIESLRLLEFIAGDADS-KVKIAERDGLLAETVKSLSLDSDRRLIE 252 (408)
Q Consensus 178 ~---~~~~~i~~~~~g~i~~Lv~lL~-~~~~~~~~~~Aa~~L~~La~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 252 (408)
. ...... -...+|.|+..+. +. +...|..|..+|..++..... -... . ...++.|+..|.++ ++.+++
T Consensus 121 ~~~~~~~~~~---~~~llp~L~~~l~~~~-~~~~~~~al~~l~~~~~~~~~~l~~~-~-~~ll~~l~~~L~~~-~~~vR~ 193 (1230)
T 1u6g_C 121 SSGSALAANV---CKKITGRLTSAIAKQE-DVSVQLEALDIMADMLSRQGGLLVNF-H-PSILTCLLPQLTSP-RLAVRK 193 (1230)
T ss_dssp ---CCTHHHH---HHHHHHHHHHHHSCCS-CHHHHHHHHHHHHHHHHHTCSSCTTT-H-HHHHHHHGGGGGCS-SHHHHH
T ss_pred ccccchHHHH---HHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhHhHHHHH-H-HHHHHHHHHHHcCC-cHHHHH
Confidence 0 000011 2356899999998 46 889999999999998853211 1111 1 34788888889886 889999
Q ss_pred HHHHHHHHhccCcchHHHHHhcCcHHHHHHHhcc
Q 036338 253 ASLSCLITISSSKRAKTKLINHKLITELGKLITD 286 (408)
Q Consensus 253 ~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~ 286 (408)
.|+.+|..++...... + -...++.|+..|..
T Consensus 194 ~a~~al~~l~~~~~~~--~-~~~~l~~l~~~L~~ 224 (1230)
T 1u6g_C 194 RTIIALGHLVMSCGNI--V-FVDLIEHLLSELSK 224 (1230)
T ss_dssp HHHHHHHHHTTTC-------CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHH--H-HHHHHHHHHHHhcc
Confidence 9999999998764432 2 23468888888875
No 151
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.00099 Score=63.57 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=52.5
Q ss_pred CcccccCccccCCCceec-CCCCc--ccHhhHHHHHhc-CCCCCCCcccccCCCCCcccHHHHHHHHH
Q 036338 12 SFFRCPISLDVMKSPVSL-CTGVT--YDRASIQRWLDS-GNNTCPATMQVLQSKEFVPNRTLQRLIQI 75 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~-~cgh~--f~r~cI~~~~~~-~~~~CP~~~~~l~~~~l~~n~~l~~~I~~ 75 (408)
-.+.|||+...|..|+-- .|.|. |+...+.++... +...||+|++.+...+|..+..+.+.+..
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 348899999999999976 69998 888877776543 56789999999988999999888776543
No 152
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.56 E-value=0.1 Score=56.07 Aligned_cols=102 Identities=9% Similarity=0.075 Sum_probs=70.6
Q ss_pred cccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchH
Q 036338 189 QDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAK 268 (408)
Q Consensus 189 ~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~ 268 (408)
...++.+++.|....++.+|..++.++.--.....+ ..+|..|+..+.+..+..+++.|+.+|..+.....
T Consensus 540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn-------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~-- 610 (963)
T 4ady_A 540 QELADDLITKMLASDESLLRYGGAFTIALAYAGTGN-------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY-- 610 (963)
T ss_dssp GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC-------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--
Confidence 345677788887543777777777766543333322 23456666666554477899999999998776543
Q ss_pred HHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 269 TKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 269 ~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
..++.++.+|.. ..++.++..|..+|..++.
T Consensus 611 ------e~v~rlv~~L~~--------------------~~d~~VR~gAalALGli~a 641 (963)
T 4ady_A 611 ------TTVPRIVQLLSK--------------------SHNAHVRCGTAFALGIACA 641 (963)
T ss_dssp ------SSHHHHTTTGGG--------------------CSCHHHHHHHHHHHHHHTS
T ss_pred ------HHHHHHHHHHHh--------------------cCCHHHHHHHHHHHHHhcc
Confidence 357888887764 3478999999999999865
No 153
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.52 E-value=0.058 Score=48.77 Aligned_cols=150 Identities=19% Similarity=0.288 Sum_probs=111.6
Q ss_pred HHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-c---hhhHHHHHHHHHHhcccccchHHHHHHHhccCcccH
Q 036338 117 SENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-D---VNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCL 192 (408)
Q Consensus 117 ~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~---~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i 192 (408)
.+|+.-|..+|. +++.|..+.++ +..-.|-.+|...+ . +-..-.++++++.|.+ .|+..+-..+. +..+|
T Consensus 74 cnaLaLlQcvAs-hpetr~~Fl~a-~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK--~dd~eVi~fLL--~tEii 147 (268)
T 2fv2_A 74 CNALALLQCVAS-HPETRSAFLAA-HIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVK--TDEQEVINFLL--TTEII 147 (268)
T ss_dssp HHHHHHHHHHHH-CTTTHHHHHHT-TGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGG--GCCHHHHHHHH--HTTHH
T ss_pred HHHHHHHHHHHc-CcchhhHHHHc-cchHHhhhhhccccCCCcchhhhhhHHHHHHHHhc--cCcHHHHHHHH--hhhHH
Confidence 456666676665 78999999999 88888888887665 1 1233567888888887 44444455555 78899
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcC-------hHHHHHHhcccCCCHHHHHHHHHHHHHhccCc
Q 036338 193 NSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDG-------LLAETVKSLSLDSDRRLIEASLSCLITISSSK 265 (408)
Q Consensus 193 ~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g-------~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~ 265 (408)
|..++.+..| +.-.|.-|..++..+-.++.+-..+..+.. ++..+|.-+....+++..+...++-..|+.++
T Consensus 148 plCLrime~G-selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 148 PLCLRIMESG-SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HHHHHHHHHS-CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHhhc-cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 9999999999 999999999999999887766655543332 33333333333348999999999999999999
Q ss_pred chHHHHHh
Q 036338 266 RAKTKLIN 273 (408)
Q Consensus 266 ~n~~~~~~ 273 (408)
..|..+..
T Consensus 227 rar~aL~~ 234 (268)
T 2fv2_A 227 RAREALRQ 234 (268)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877663
No 154
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.38 E-value=0.37 Score=47.65 Aligned_cols=200 Identities=16% Similarity=0.157 Sum_probs=124.4
Q ss_pred HHHHHHHHHHhcCC-hh-HHHHHHHHHHHhhhCh---hhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccc
Q 036338 100 DEVKDIIRVAISKN-ED-FSENLTKIVAFAKESD---ENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKI 174 (408)
Q Consensus 100 ~~i~~Lv~~L~s~~-~~-~~~Al~~L~~la~~~~---~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~ 174 (408)
..+..++..|+... .+ ....+.-+..+..+++ ..-..+.+.+.....+.......++.-.+..+..++..++...
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 45677888888654 44 6667777777777665 3333444442333333332222222222344444444443200
Q ss_pred cchHHHHHHHhccCcccHH--HHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcC-hHHHHHHhccc-------
Q 036338 175 EDQQHLMNLILKRDQDCLN--SLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDG-LLAETVKSLSL------- 244 (408)
Q Consensus 175 ~~~~~~~~~i~~~~~g~i~--~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g-~i~~Lv~lL~~------- 244 (408)
..++ +.+ ...+. .++..|.+..+...+.-++..|..|...++.|..+....| .+++++++++.
T Consensus 157 ~~~~---~~l----~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~ 229 (480)
T 1ho8_A 157 LHNV---KLV----EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLA 229 (480)
T ss_dssp TCCH---HHH----HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC----
T ss_pred CccH---hHH----HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccc
Confidence 1111 111 12233 4556666632456666799999999999999999875233 57888766541
Q ss_pred ---------CCCHHHHHHHHHHHHHhccCcchHHHHHhcCcH--HHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchH
Q 036338 245 ---------DSDRRLIEASLSCLITISSSKRAKTKLINHKLI--TELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLIT 313 (408)
Q Consensus 245 ---------~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i--~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (408)
+...+.+=.++-++|-|+..++....+...+.+ +.|++.++. .....+.
T Consensus 230 ~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~--------------------s~KEKvv 289 (480)
T 1ho8_A 230 TRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKI--------------------TIKEKVS 289 (480)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHH--------------------CCSHHHH
T ss_pred cccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHh--------------------hccchhH
Confidence 113466777899999999998877888777754 778888876 3478999
Q ss_pred HHHHHHHHHHhCC
Q 036338 314 EKALRLVEILSTT 326 (408)
Q Consensus 314 ~~a~~~L~~L~~~ 326 (408)
..++++|.||...
T Consensus 290 Rv~la~l~Nll~~ 302 (480)
T 1ho8_A 290 RLCISIILQCCST 302 (480)
T ss_dssp HHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999874
No 155
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.25 E-value=0.19 Score=54.38 Aligned_cols=247 Identities=12% Similarity=0.128 Sum_probs=157.4
Q ss_pred HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHH
Q 036338 101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQH 179 (408)
Q Consensus 101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~ 179 (408)
.+..+++.+..++.+ +..++..|..+...+.. ...... +.+..|.+.+....+. |.|+.++..|+........
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~ 88 (986)
T 2iw3_A 15 VLEELFQKLSVATADNRHEIASEVASFLNGNII--EHDVPE-HFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPS 88 (986)
T ss_dssp HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCS--SSSCCH-HHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTT
T ss_pred HHHHHHhhccccchhHHHHHHHHHHHHHhcccc--ccccch-hHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCC
Confidence 345566666665544 77888888888664322 123334 6777777777654422 8888888888741111111
Q ss_pred HHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHH
Q 036338 180 LMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLI 259 (408)
Q Consensus 180 ~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~ 259 (408)
....++ +.++.++..+... ...+|..|..++..+...-. ...+ ..++|.|+..|++...=+.+..|+.+|.
T Consensus 89 ~e~~~~----~~~~~~~~~~~dk-~~~v~~aa~~~~~~~~~~~~-~~a~---~~~~~~~~~~~~~~~kw~~k~~~l~~~~ 159 (986)
T 2iw3_A 89 VEPYIV----QLVPAICTNAGNK-DKEIQSVASETLISIVNAVN-PVAI---KALLPHLTNAIVETNKWQEKIAILAAFS 159 (986)
T ss_dssp THHHHH----TTHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSC-GGGH---HHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred cccchH----HHHHHHHHHhcCC-chHHHHHHHHHHHHHHHhCC-HHHH---HHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 122332 4677777777666 67888888878777754321 1112 2468999999976534589999999999
Q ss_pred HhccCcchHHHHH--hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhc
Q 036338 260 TISSSKRAKTKLI--NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDA 337 (408)
Q Consensus 260 ~Ls~~~~n~~~~~--~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~ 337 (408)
.|+.... ..+. =...||.+-+.+.+ ..++++..|..++..+|..=+|+. + .
T Consensus 160 ~~~~~~~--~~~~~~~~~~~p~~~~~~~d---------------------~k~~v~~~~~~~~~~~~~~~~n~d-~---~ 212 (986)
T 2iw3_A 160 AMVDAAK--DQVALRMPELIPVLSETMWD---------------------TKKEVKAAATAAMTKATETVDNKD-I---E 212 (986)
T ss_dssp HHHHHSH--HHHHHHHHHHHHHHHHHTTC---------------------SSHHHHHHHHHHHHHHGGGCCCTT-T---G
T ss_pred HHHHHhH--HHHHHhccchhcchHhhccc---------------------CcHHHHHHHHHHHHHHHhcCCCcc-h---h
Confidence 9987542 3333 35788888888864 378999999999999987444443 1 2
Q ss_pred CchHHHHHHHHH--HHHHHHH-----------hcCcHHHHHHHHh---hcCCHHHHHHHHHHHHHHhh
Q 036338 338 ALLNGVVQKMLK--TAQEAVS-----------SSNVLTKILLLMQ---SNCTPAVRQMSADLLKIFRV 389 (408)
Q Consensus 338 g~i~~lv~~l~~--~~~~~~~-----------~~g~~~~Ll~ll~---~~~~~~~k~~A~~lL~~l~~ 389 (408)
.-||.||+.|.+ ++-+.+- .+-.+..++-+|. ...+..+|+++..+...+.+
T Consensus 213 ~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~ 280 (986)
T 2iw3_A 213 RFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCK 280 (986)
T ss_dssp GGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhh
Confidence 458888887766 3333321 1222333333332 23466688999999988877
No 156
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=96.25 E-value=0.0025 Score=60.63 Aligned_cols=63 Identities=11% Similarity=0.212 Sum_probs=52.4
Q ss_pred CcccccCccccCCCceec-CCCCc--ccHhhHHHHHhc-CCCCCCCcccccCCCCCcccHHHHHHHH
Q 036338 12 SFFRCPISLDVMKSPVSL-CTGVT--YDRASIQRWLDS-GNNTCPATMQVLQSKEFVPNRTLQRLIQ 74 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~-~cgh~--f~r~cI~~~~~~-~~~~CP~~~~~l~~~~l~~n~~l~~~I~ 74 (408)
-.+.|||+...|+.|+-- .|.|. |+...+.++... +...||+|++.+...+|..+..+.+.+.
T Consensus 214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~ 280 (360)
T 4fo9_A 214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILN 280 (360)
T ss_dssp EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHT
T ss_pred EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHH
Confidence 357899999999999976 69998 888887776554 4678999999998889999888877654
No 157
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=96.24 E-value=0.1 Score=54.00 Aligned_cols=173 Identities=14% Similarity=0.130 Sum_probs=118.8
Q ss_pred HHHHHHHHHhcC---Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhccccc
Q 036338 101 EVKDIIRVAISK---NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIE 175 (408)
Q Consensus 101 ~i~~Lv~~L~s~---~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~ 175 (408)
++..+-+.+++. +.. +.+++..|-.+..-.. +.+.+.+..++++.+.+ ..+ .-+--.+..++. .
T Consensus 36 E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~-------d~s~~~~~vvkl~~s~~~~~K--rl~YL~l~~~~~--~ 104 (621)
T 2vgl_A 36 ELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGH-------DIDFGHMEAVNLLSSNRYTEK--QIGYLFISVLVN--S 104 (621)
T ss_dssp HHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSC-------CCCSCHHHHHHGGGCSCHHHH--HHHHHHHHHSCC--C
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCC-------CCchhHHHHHHHhcCCCHHHH--HHHHHHHHHHcc--C
Confidence 344555566632 344 7777777666543222 12245667788888776 333 555556666665 3
Q ss_pred chHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhc--ccCCCHHHHHH
Q 036338 176 DQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSL--SLDSDRRLIEA 253 (408)
Q Consensus 176 ~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL--~~~~~~~~~~~ 253 (408)
+.+. ..+ ++..+.+=|.++ ++-.|..|..+|.++.. + .+.+ ..++++.++| .+. ++-+++.
T Consensus 105 ~~e~--~~L------~iN~l~kDl~~~-n~~ir~lALr~L~~i~~-~----e~~~--~l~~~v~~~l~~~d~-~~~VRK~ 167 (621)
T 2vgl_A 105 NSEL--IRL------INNAIKNDLASR-NPTFMGLALHCIANVGS-R----EMAE--AFAGEIPKILVAGDT-MDSVKQS 167 (621)
T ss_dssp CHHH--HHH------HHHHHHHHHHSC-CHHHHHHHHHHHHHHCC-H----HHHH--HHTTHHHHHHHCSSS-CHHHHHH
T ss_pred CcHH--HHH------HHHHHHHhcCCC-CHHHHHHHHHHhhccCC-H----HHHH--HHHHHHHHHHhCCCC-CHHHHHH
Confidence 3331 222 366777778888 99999999999999863 2 2443 4678899999 776 9999999
Q ss_pred HHHHHHHhccCcchHHHHHh-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 254 SLSCLITISSSKRAKTKLIN-HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 254 A~~aL~~Ls~~~~n~~~~~~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
|+-+++.+....+ .++. .+.++.|.++|.++ ++.++..|+.+|..++.
T Consensus 168 A~~al~kl~~~~p---~~~~~~~~~~~l~~lL~d~---------------------d~~V~~~a~~~l~~i~~ 216 (621)
T 2vgl_A 168 AALCLLRLYRTSP---DLVPMGDWTSRVVHLLNDQ---------------------HLGVVTAATSLITTLAQ 216 (621)
T ss_dssp HHHHHHHHHHHCG---GGCCCCSCHHHHHHHTTCS---------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCh---hhcCchhHHHHHHHHhCCC---------------------CccHHHHHHHHHHHHHH
Confidence 9999999987433 2232 58899999999754 88999999999999875
No 158
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.15 E-value=0.25 Score=53.48 Aligned_cols=190 Identities=9% Similarity=0.110 Sum_probs=119.1
Q ss_pred HHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHH
Q 036338 102 VKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHL 180 (408)
Q Consensus 102 i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~ 180 (408)
++.++......... |..|-.++..+...-+. ..+ . .++|.|+..|++...=+....|+.+|..|+. ....++
T Consensus 97 ~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~--~a~--~-~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~--~~~~~~ 169 (986)
T 2iw3_A 97 VPAICTNAGNKDKEIQSVASETLISIVNAVNP--VAI--K-ALLPHLTNAIVETNKWQEKIAILAAFSAMVD--AAKDQV 169 (986)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCG--GGH--H-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HSHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhCCH--HHH--H-HHHHHHHHHhccccchHHHHHHHHHHHHHHH--HhHHHH
Confidence 34445544444445 66666666666554222 233 2 6789999999776533344888999988875 222221
Q ss_pred HHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHH
Q 036338 181 MNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLIT 260 (408)
Q Consensus 181 ~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~ 260 (408)
-.. =...||.+...+-.. ..+++..|..++..+|..-+|+.. ...||.||+.+.++ + + .-.+...|..
T Consensus 170 ~~~----~~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~----~~~~~~~~~~~~~p-~-~-~~~~~~~l~~ 237 (986)
T 2iw3_A 170 ALR----MPELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI----ERFIPSLIQCIADP-T-E-VPETVHLLGA 237 (986)
T ss_dssp HHH----HHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT----GGGHHHHHHHHHCT-T-H-HHHHHHHHTT
T ss_pred HHh----ccchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch----hhhHHHHHHHhcCh-h-h-hHHHHHHhhc
Confidence 111 246778888777777 889999999999999987777665 35799999999876 3 2 2333444433
Q ss_pred hccCcc--hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC---CHHHHHHHH
Q 036338 261 ISSSKR--AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST---TKQGRMEIC 334 (408)
Q Consensus 261 Ls~~~~--n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~---~~~~~~~~~ 334 (408)
-....+ .....+ .+|.|..-|... ...++.+++-+..||+. +|..-+.+.
T Consensus 238 ~tfv~~v~~~~l~~---~~p~l~r~l~~~---------------------~~~~~r~~~~~~~n~~~lv~~~~~~~~f~ 292 (986)
T 2iw3_A 238 TTFVAEVTPATLSI---MVPLLSRGLNER---------------------ETGIKRKSAVIIDNMCKLVEDPQVIAPFL 292 (986)
T ss_dssp CCCCSCCCHHHHHH---HHHHHHHHHTSS---------------------SHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred CeeEeeecchhHHH---HHHHHHhhhccC---------------------cchhheeeEEEEcchhhhcCCHHHHhhhh
Confidence 322222 112211 456676767643 67888999999999986 454444443
No 159
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.88 E-value=0.32 Score=45.48 Aligned_cols=162 Identities=10% Similarity=-0.019 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHH----HHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCccc
Q 036338 116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLV----EILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDC 191 (408)
Q Consensus 116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv----~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~ 191 (408)
+.-++..+|-++. ++.....+.+. +.-..++ ..+.+......+--++.++.|+.. +... +..+.....-+
T Consensus 119 ~fPvLDLlRl~~l-~p~~~~~~~~~-~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~--~~~g--~~~l~~~~~~i 192 (304)
T 3ebb_A 119 VFPALDILRLSIK-HPSVNENFCNE-KEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFV--GQAG--QKLMMSQRESL 192 (304)
T ss_dssp CHHHHHHHHHHTT-SHHHHHHHHST-TTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGG--SHHH--HHHHHHTHHHH
T ss_pred HHHHHHHHHHHHc-CccHHHHhhcc-ccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccC--Cchh--HHHHHHHHHHH
Confidence 4455555555544 45555555443 2223333 222222222234678889999876 3433 55554212234
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHH
Q 036338 192 LNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKL 271 (408)
Q Consensus 192 i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~ 271 (408)
++.+...+.+. +...|..++.++.|++.........-....++..+..+++...+.++.-.++.||.+|...+.....+
T Consensus 193 l~~~~~~~~~~-nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~l 271 (304)
T 3ebb_A 193 MSHAIELKSGS-NKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQL 271 (304)
T ss_dssp HHHHHGGGSSC-CHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHH
Confidence 45555554455 88999999999999986321000011112245556667766568899999999999999877666666
Q ss_pred HhcCcHHHHHHHh
Q 036338 272 INHKLITELGKLI 284 (408)
Q Consensus 272 ~~~G~i~~Lv~lL 284 (408)
.+.=.+...+.-+
T Consensus 272 ak~l~~~~~v~~~ 284 (304)
T 3ebb_A 272 AKSLGVDSQIKKY 284 (304)
T ss_dssp HHHTTHHHHGGGG
T ss_pred HHHcCHHHHHHHH
Confidence 6543333334333
No 160
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.93 E-value=0.024 Score=51.25 Aligned_cols=48 Identities=15% Similarity=0.291 Sum_probs=38.3
Q ss_pred cccccCccccCCCceecC-CCCcccHhhHHHHHhcC-CCCCCCcccccCC
Q 036338 13 FFRCPISLDVMKSPVSLC-TGVTYDRASIQRWLDSG-NNTCPATMQVLQS 60 (408)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~-cgh~f~r~cI~~~~~~~-~~~CP~~~~~l~~ 60 (408)
-..|.||.++..-=+.-+ |+|.|=..|+.+|+... ...||.|+.+.+.
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 346999999988654443 99999999999999863 4689999987544
No 161
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=94.73 E-value=1.8 Score=37.24 Aligned_cols=175 Identities=14% Similarity=0.193 Sum_probs=108.1
Q ss_pred HHHHHHHHHHhcCCh-h-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch
Q 036338 100 DEVKDIIRVAISKNE-D-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ 177 (408)
Q Consensus 100 ~~i~~Lv~~L~s~~~-~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~ 177 (408)
..+..|+.+++.+.. + ..+-++.+..++..+|+. ++ +.||.|..=..-+ +.+..-+...+|..++. ..+
T Consensus 69 pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~----v~--~vVp~lfanyrig-d~kikIn~~yaLeeIar--anP 139 (253)
T 2db0_A 69 PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL----VK--SMIPVLFANYRIG-DEKTKINVSYALEEIAK--ANP 139 (253)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH----HH--HHHHHHHHHSCCC-SHHHHHHHHHHHHHHHH--HCH
T ss_pred HHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH----HH--hhHHHHHHHHhcC-CccceecHHHHHHHHHH--hCh
Confidence 345556666555432 3 455667777777766542 22 3444444433333 45555777778887775 232
Q ss_pred HHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHH
Q 036338 178 QHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSC 257 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~a 257 (408)
. .+ .+++.-+..+|.+. +...|-.|... ++.-.+|...-+. -++|.|..+|.++ +.-++..|+.+
T Consensus 140 ~----l~----~~v~rdi~smltsk-d~~Dkl~aLnF---i~alGen~~~yv~--PfLprL~aLL~D~-deiVRaSaVEt 204 (253)
T 2db0_A 140 M----LM----ASIVRDFMSMLSSK-NREDKLTALNF---IEAMGENSFKYVN--PFLPRIINLLHDG-DEIVRASAVEA 204 (253)
T ss_dssp H----HH----HHHHHHHHHHTSCS-SHHHHHHHHHH---HHTCCTTTHHHHG--GGHHHHHGGGGCS-SHHHHHHHHHH
T ss_pred H----HH----HHHHHHHHHHhcCC-ChHHHHHHHHH---HHHHhccCccccC--cchHHHHHHHcCc-chhhhHHHHHH
Confidence 2 22 35677788888887 87666655444 4444455555553 4799999999997 88999999999
Q ss_pred HHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHh
Q 036338 258 LITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILS 324 (408)
Q Consensus 258 L~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~ 324 (408)
|.+|+...+--..+ |..-++-+.+ .+..++......|..|.
T Consensus 205 L~~lA~~npklRki-----i~~kl~e~~D---------------------~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 205 LVHLATLNDKLRKV-----VIKRLEELND---------------------TSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHHTSCHHHHHH-----HHHHHHHCCC---------------------SCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCHHHHHH-----HHHHHHHhcC---------------------cHHHHHHHHHHHHHHHH
Confidence 99999865432222 2233444443 25666666666666664
No 162
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=94.00 E-value=1 Score=44.47 Aligned_cols=183 Identities=11% Similarity=0.105 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHhhhChhhhhhhhhcCChH--HHHHHHhhcCcchhhHHHHHHHHHHhcccccch--HHHHHHHhccCccc
Q 036338 116 FSENLTKIVAFAKESDENKTFLAKFDGLV--VMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ--QHLMNLILKRDQDC 191 (408)
Q Consensus 116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i--~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~--~~~~~~i~~~~~g~ 191 (408)
+-+++-++..++.+ +...+.+... +.+ +.|+.+++....+++.+-++.+|.||.....+. ....+.+. ..++
T Consensus 245 ~Y~~ll~iWlLSF~-~~~~~~l~~~-~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~--~~~~ 320 (480)
T 1ho8_A 245 QYHSLLLIWLLTFN-PVFANELVQK-YLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLL--LGNA 320 (480)
T ss_dssp HHHHHHHHHHHTTS-HHHHHHHHTT-SHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHH--HHCH
T ss_pred HHHHHHHHHHHHcC-HHHHHHHHhc-chHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHH--Hccc
Confidence 45678888888875 4566666665 644 677788887666677789999999998621111 11122332 2333
Q ss_pred HHHHHHHHhcC--CChHHHHHHHHHHHHhh-------cCc------------------------chhhHHhh-hcChHHH
Q 036338 192 LNSLLLVLKQQ--ESVDSRIESLRLLEFIA-------GDA------------------------DSKVKIAE-RDGLLAE 237 (408)
Q Consensus 192 i~~Lv~lL~~~--~~~~~~~~Aa~~L~~La-------~~~------------------------~~~~~i~~-~~g~i~~ 237 (408)
++++..|... .+.+..+.--.+...|. ..+ +|...+-+ ....+..
T Consensus 321 -l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~ 399 (480)
T 1ho8_A 321 -LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQ 399 (480)
T ss_dssp -HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHH
T ss_pred -hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHH
Confidence 5677777642 16666655443333332 111 22223332 2346789
Q ss_pred HHHhccc---------CCCHHHHHHHHHHHHHhccCcchHHHHH-hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCC
Q 036338 238 TVKSLSL---------DSDRRLIEASLSCLITISSSKRAKTKLI-NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGN 307 (408)
Q Consensus 238 Lv~lL~~---------~~~~~~~~~A~~aL~~Ls~~~~n~~~~~-~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~ 307 (408)
|+++|++ +.++....-|+.=|..++.+.++...++ +.|+=..+..||.++
T Consensus 400 L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~-------------------- 459 (480)
T 1ho8_A 400 LIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-------------------- 459 (480)
T ss_dssp HHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS--------------------
T ss_pred HHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC--------------------
Confidence 9999973 2267788888888999998666555555 688888888999764
Q ss_pred CCcchHHHHHHHHHHHh
Q 036338 308 GTVLITEKALRLVEILS 324 (408)
Q Consensus 308 ~~~~~~~~a~~~L~~L~ 324 (408)
++.++..|+.++..+-
T Consensus 460 -d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 460 -DSRVKYEALKATQAII 475 (480)
T ss_dssp -SHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHH
Confidence 8999999999887763
No 163
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.39 E-value=1.2 Score=40.54 Aligned_cols=187 Identities=11% Similarity=0.122 Sum_probs=110.8
Q ss_pred HHHHHhcCCh-hHHHHHHHHHHHhhhChhh--hh-hhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch---
Q 036338 105 IIRVAISKNE-DFSENLTKIVAFAKESDEN--KT-FLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ--- 177 (408)
Q Consensus 105 Lv~~L~s~~~-~~~~Al~~L~~la~~~~~~--r~-~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~--- 177 (408)
|-+.|.+.+= +|.+|+..|..+....+.. .. .+......++.+-..+.+.. ..++..++.+|..++......
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3456777653 4999999998876543221 11 11122123445555665443 556688888877665311111
Q ss_pred HHHHHHHhccCcccHHHHHHH-HhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338 178 QHLMNLILKRDQDCLNSLLLV-LKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS 256 (408)
Q Consensus 178 ~~~~~~i~~~~~g~i~~Lv~l-L~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~ 256 (408)
....... -..+++.|+.- |.++ ...++..|..+|..+........ -+++.++..+++. ++.++..++.
T Consensus 93 ~~~~~~~---~~~~l~~lveK~l~~~-k~~~~~~a~~~l~~~~~~~~~~~------~~~e~l~~~l~~K-npkv~~~~l~ 161 (278)
T 4ffb_C 93 NAHNITL---ISTWTPLLVEKGLTSS-RATTKTQSMSCILSLCGLDTSIT------QSVELVIPFFEKK-LPKLIAAAAN 161 (278)
T ss_dssp HHHHHHH---HHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHTSSSSH------HHHHHHGGGGGCS-CHHHHHHHHH
T ss_pred cchhHHH---HHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHhcc-CHHHHHHHHH
Confidence 1001111 23567777764 5666 77888888888887764332211 2356677778776 9999999999
Q ss_pred HHHHhccCc----chHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 257 CLITISSSK----RAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 257 aL~~Ls~~~----~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
.|..+.... -+....+ ..+++.+..+|.+. ++.+++.|..++..+-.
T Consensus 162 ~l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~---------------------~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 162 CVYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHG---------------------DRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCS---------------------SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCC---------------------cHHHHHHHHHHHHHHHH
Confidence 998875421 1222222 12456677777754 89999999999988865
No 164
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=93.38 E-value=0.56 Score=44.82 Aligned_cols=205 Identities=8% Similarity=0.088 Sum_probs=112.9
Q ss_pred cccHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccCHHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCC
Q 036338 64 VPNRTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDG 142 (408)
Q Consensus 64 ~~n~~l~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G 142 (408)
.+|..+|+++=-+...-.. .+ .+ + --.+..+.+.++++++- |-.|++.|..+... +. .+ .
T Consensus 79 s~d~~lKrLvYLyl~~~~~---~~---~e---~--iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m----~~--~ 139 (355)
T 3tjz_B 79 SNDPTLRRMCYLTIKEMSC---IA---ED---V--IIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TM----LQ--A 139 (355)
T ss_dssp CCCHHHHHHHHHHHHHHTT---TS---SC---G--GGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TT----HH--H
T ss_pred CCCHHHHHHHHHHHHHhCC---CH---HH---H--HHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HH----HH--H
Confidence 3577888887666544321 11 11 0 23456677888888876 88888888888643 21 21 2
Q ss_pred hHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCc
Q 036338 143 LVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDA 222 (408)
Q Consensus 143 ~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~ 222 (408)
..+.+...|.+.+ +-+...|+-+...|.. ... +.+ .+++..+-+++.+. +..++.+|..+|..+...+
T Consensus 140 l~~~lk~~L~d~~-pyVRk~A~l~~~kL~~--~~p----e~v----~~~~~~l~~ll~d~-n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 140 IERYMKQAIVDKV-PSVSSSALVSSLHLLK--CSF----DVV----KRWVNEAQEAASSD-NIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp HHHHHHHHHTCSS-HHHHHHHHHHHHHHTT--TCH----HHH----HTTHHHHHHHTTCS-SHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCC-HHHHHHHHHHHHHHhc--cCH----HHH----HHHHHHHHHHhcCC-CccHHHHHHHHHHHHHhhc
Confidence 3445666666555 2233777777777765 232 233 25788888888877 8888888888888887643
Q ss_pred c-hhhHHh----h---------------------------hcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHH
Q 036338 223 D-SKVKIA----E---------------------------RDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTK 270 (408)
Q Consensus 223 ~-~~~~i~----~---------------------------~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~ 270 (408)
. .-..+. . ....++.|..+|++. ++.+.=.|++++..+...+..
T Consensus 208 ~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~~--- 283 (355)
T 3tjz_B 208 RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSAK--- 283 (355)
T ss_dssp HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCS-SHHHHHHHHHHHTC----------
T ss_pred hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCHH---
Confidence 2 000000 0 012333344444443 566777777777777553211
Q ss_pred HHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 271 LINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 271 ~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
. -.-++.+|..+|.++ ++.++-.|+..|..++.
T Consensus 284 ~-~~~a~~~L~~fLss~---------------------d~niryvaLr~L~~l~~ 316 (355)
T 3tjz_B 284 E-LAPAVSVLQLFCSSP---------------------KAALRYAAVRTLNKVAM 316 (355)
T ss_dssp -----CCCTHHHHHHSS---------------------SSSSHHHHHHCC-----
T ss_pred H-HHHHHHHHHHHHcCC---------------------CchHHHHHHHHHHHHHH
Confidence 1 133566777777754 77888888888888765
No 165
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=93.29 E-value=1 Score=41.14 Aligned_cols=179 Identities=13% Similarity=0.133 Sum_probs=104.5
Q ss_pred HHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch-HHHHHH
Q 036338 106 IRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ-QHLMNL 183 (408)
Q Consensus 106 v~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~-~~~~~~ 183 (408)
...|.+.+.. +.+|+..|......+++ ..+...+..++-+.--+.+. ...+...++.+|..+.....+. ..+...
T Consensus 52 ~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~-N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ 128 (266)
T 2of3_A 52 MSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFET-NPAALIKVLELCKVIVELIRDTETPMSQE 128 (266)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 3344444544 77788888777654432 22222201122111111222 2334455555554442100011 000000
Q ss_pred HhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338 184 ILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS 263 (408)
Q Consensus 184 i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~ 263 (408)
- ..-.+|.|+.-+..+ ...+|..+-.+|..+... ..- ..+++.++.-+++. +...++..+..|..+-.
T Consensus 129 e---a~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v------~~~-~~v~~~l~~g~ksK-N~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 129 E---VSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDV------VGP-LKMTPMLLDALKSK-NARQRSECLLVIEYYIT 196 (266)
T ss_dssp H---HHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHH------HCH-HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHH------CCH-HHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 0 124589999888777 788998888888777632 222 44678888888886 89999999999888754
Q ss_pred CcchHHHHHhcCcH---HHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHh
Q 036338 264 SKRAKTKLINHKLI---TELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILS 324 (408)
Q Consensus 264 ~~~n~~~~~~~G~i---~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~ 324 (408)
...-. -..++ +.+..++.++ +..+++.|+.++..+-
T Consensus 197 ~~G~~----~~~~l~~~~~ia~ll~D~---------------------d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 197 NAGIS----PLKSLSVEKTVAPFVGDK---------------------DVNVRNAAINVLVACF 235 (266)
T ss_dssp HHCSG----GGGGGCHHHHHGGGGGCS---------------------SHHHHHHHHHHHHHHH
T ss_pred hcCCC----ccccccchHHHHHHHcCC---------------------CHHHHHHHHHHHHHHH
Confidence 22211 24578 9999999865 8899999988887654
No 166
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=93.05 E-value=4.6 Score=38.38 Aligned_cols=100 Identities=11% Similarity=0.124 Sum_probs=56.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHH
Q 036338 192 LNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKL 271 (408)
Q Consensus 192 i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~ 271 (408)
+..|.+=++++ ++-.|-.|.++|.++...+ +.+ ...+++-+.|.+. ++-+++.|+-+.+.|...... +
T Consensus 106 ~Nsl~kDl~~~-N~~iR~lALRtL~~I~~~~-----m~~--~l~~~lk~~L~d~-~pyVRk~A~l~~~kL~~~~pe---~ 173 (355)
T 3tjz_B 106 TSSLTKDMTGK-EDSYRGPAVRALCQITDST-----MLQ--AIERYMKQAIVDK-VPSVSSSALVSSLHLLKCSFD---V 173 (355)
T ss_dssp HHHHHHHHHSS-CHHHHHHHHHHHHHHCCTT-----THH--HHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTTCHH---H
T ss_pred HHHHHhhcCCC-cHhHHHHHHHHHhcCCCHH-----HHH--HHHHHHHHHcCCC-CHHHHHHHHHHHHHHhccCHH---H
Confidence 45555555666 6666666666666665332 221 2445555556554 666666666666666554322 2
Q ss_pred HhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 272 INHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 272 ~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
++ +.++.+-+++.+. ++.++-.|+++|..+..
T Consensus 174 v~-~~~~~l~~ll~d~---------------------n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 174 VK-RWVNEAQEAASSD---------------------NIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HH-TTHHHHHHHTTCS---------------------SHHHHHHHHHHHHHHHT
T ss_pred HH-HHHHHHHHHhcCC---------------------CccHHHHHHHHHHHHHh
Confidence 22 4566666666542 55666666666666655
No 167
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=92.95 E-value=1.3 Score=44.83 Aligned_cols=236 Identities=15% Similarity=0.125 Sum_probs=139.2
Q ss_pred HHHHHHHHHhcCChh-HHHHHHHHHHHhhhChh--hhhhhhhcCChHHHHHHHh--hc-C----c--chhhHHHHHHHHH
Q 036338 101 EVKDIIRVAISKNED-FSENLTKIVAFAKESDE--NKTFLAKFDGLVVMLVEIL--SN-V----N--DVNMLKQVIRVLD 168 (408)
Q Consensus 101 ~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~--~r~~i~~~~G~i~~Lv~lL--~s-~----~--~~~~~e~A~~~L~ 168 (408)
-...|+..|-++.=+ |..|+-.|+.+.+.... .|..-... ...-.|+-+| +. + + -..+.|.++.+|+
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 456677777777666 88899999998866532 11111111 1222223333 11 1 1 1224588888888
Q ss_pred HhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCH
Q 036338 169 LILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDR 248 (408)
Q Consensus 169 ~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~ 248 (408)
.+ . +=++ +..++..|+..+... ..++|..+.-.|..+ +..+..-.++++.++.-|++. +.
T Consensus 254 aL-~--hLp~---------e~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~-DD 313 (800)
T 3oc3_A 254 RI-Y--PLIG---------PNDIIEQLVGFLDSG-DWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSP-DE 313 (800)
T ss_dssp HH-T--TTSC---------SCCHHHHHTTGGGCS-CHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCS-SH
T ss_pred HH-H--hCCh---------hHHHHHHHHhhcCCC-CeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCc-cc
Confidence 77 4 2221 123344555555677 899999999999999 122211257899999999987 88
Q ss_pred HHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHH
Q 036338 249 RLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQ 328 (408)
Q Consensus 249 ~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~ 328 (408)
+++..|+.+|.-++ .++.. ..++..|.+.|.+- ++-.......+..|..|+..+.
T Consensus 314 DVRAVAAetLiPIA-~p~~l-----~~LL~iLWd~L~~L-------------------DDLSASTgSVMdLLAkL~s~p~ 368 (800)
T 3oc3_A 314 DIKLLSAELLCHFP-ITDSL-----DLVLEKCWKNIESE-------------------ELISVSKTSNLSLLTKIYRENP 368 (800)
T ss_dssp HHHHHHHHHHTTSC-CSSTH-----HHHHHHHHHHHHTC-------------------CSCCTTHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhhhhc-chhhH-----HHHHHHHHHHhhhh-------------------cccchhhHHHHHHHHHHHcCCc
Confidence 99999999999998 22221 23456677777642 2234455666777777776552
Q ss_pred HHHHHHhhcCchHHHHHHHHH---HHHHHHHh-------cCcHHHHHHHHhhcCCHHHHHHHHHHHH
Q 036338 329 GRMEICQDAALLNGVVQKMLK---TAQEAVSS-------SNVLTKILLLMQSNCTPAVRQMSADLLK 385 (408)
Q Consensus 329 ~~~~~~~~~g~i~~lv~~l~~---~~~~~~~~-------~g~~~~Ll~ll~~~~~~~~k~~A~~lL~ 385 (408)
+ ....+..+|.|.-.|.. .++..+++ ...+..+.+-+--+..+.+++.+.++.+
T Consensus 369 ~---a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 369 E---LSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSEESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp T---CCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred c---cccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1 11122344444432211 55555542 3445666666666778888988876665
No 168
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=92.60 E-value=0.21 Score=37.06 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=37.9
Q ss_pred cccccCccccCC-----Cceec--CCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338 13 FFRCPISLDVMK-----SPVSL--CTGVTYDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 13 ~~~Cpi~~~~~~-----dPv~~--~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
.-+|.||++-.- +|.+. .|+...||.|.+--.++++..||+|+.++.
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 358999998532 25565 499999999998888889999999998775
No 169
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=92.53 E-value=7.6 Score=37.31 Aligned_cols=173 Identities=14% Similarity=0.165 Sum_probs=108.1
Q ss_pred HHHHHhcCChh--HHHHHHHHHHHhhhChhhh-hhhhhcCChHHHHHHHhhcC---------c-chhhHHHHHHHHHHhc
Q 036338 105 IIRVAISKNED--FSENLTKIVAFAKESDENK-TFLAKFDGLVVMLVEILSNV---------N-DVNMLKQVIRVLDLIL 171 (408)
Q Consensus 105 Lv~~L~s~~~~--~~~Al~~L~~la~~~~~~r-~~i~~~~G~i~~Lv~lL~s~---------~-~~~~~e~A~~~L~~L~ 171 (408)
.|+.|.+.... -.+.+..|+.....++-.+ +.+. . +|+..|+.+|..- . +...+..++.+|..+.
T Consensus 71 yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~-~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm 148 (383)
T 3eg5_B 71 YIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-A-EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 148 (383)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-H-HHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-H-ccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence 46666655322 2345566665544444332 3444 6 7899999999631 1 2334467788888877
Q ss_pred ccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc--h-hhHHhh---------hcChHHHHH
Q 036338 172 NKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD--S-KVKIAE---------RDGLLAETV 239 (408)
Q Consensus 172 ~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~--~-~~~i~~---------~~g~i~~Lv 239 (408)
. ... .+..++. ....|..|+..|.+. +..++..+..+|..+|..++ + ...+.+ ...-+.++|
T Consensus 149 N--~~~-G~~~vl~--~~~~i~~l~~~L~s~-~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv 222 (383)
T 3eg5_B 149 N--NKF-GIKTMLE--TEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLL 222 (383)
T ss_dssp S--SHH-HHHHHHT--CSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred c--chh-hHHHHHc--ChHHHHHHHHHhCCC-chHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 5 333 3355554 778899999999888 99999999999999987654 2 333221 123477889
Q ss_pred HhcccCCCHHHHHHHHHHHHHhccCcc-------hHHHHHhcCcHHHHHHHhcc
Q 036338 240 KSLSLDSDRRLIEASLSCLITISSSKR-------AKTKLINHKLITELGKLITD 286 (408)
Q Consensus 240 ~lL~~~~~~~~~~~A~~aL~~Ls~~~~-------n~~~~~~~G~i~~Lv~lL~~ 286 (408)
..|+++.+.+.+.++...+=.+....+ -|..+...|..+.+-. |+.
T Consensus 223 ~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~ 275 (383)
T 3eg5_B 223 DGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LRE 275 (383)
T ss_dssp HTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTT
T ss_pred HHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-Hhc
Confidence 999875466666666555555655443 2445556666665554 653
No 170
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=92.32 E-value=6.2 Score=35.61 Aligned_cols=207 Identities=11% Similarity=0.077 Sum_probs=130.0
Q ss_pred HHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhc-------Cc-c---hhhHHHHHHHH
Q 036338 100 DEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSN-------VN-D---VNMLKQVIRVL 167 (408)
Q Consensus 100 ~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s-------~~-~---~~~~e~A~~~L 167 (408)
+.+-.++..|..+ + |..|+..|..--...+..--.+-...|.+..|+.=+-+ +. . ..-+.+|+..|
T Consensus 3 ~~i~qli~~L~~p--~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLl 80 (268)
T 2fv2_A 3 EKIYQWINELSSP--ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALL 80 (268)
T ss_dssp HHHHHHHHHTSST--TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc--hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHH
Confidence 3455566666543 4 77788777654333344444455555888777654432 22 1 11246777777
Q ss_pred HHhcccccchHHHHHHHhccCcccHHHHHHHHhcCC----ChHHHHHHHHHHHHhhcCcch--hhHHhhhcChHHHHHHh
Q 036338 168 DLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQE----SVDSRIESLRLLEFIAGDADS--KVKIAERDGLLAETVKS 241 (408)
Q Consensus 168 ~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~----~~~~~~~Aa~~L~~La~~~~~--~~~i~~~~g~i~~Lv~l 241 (408)
-.++. +.+. |..+. ++.+.-.|.-+|+... -.-.|-.+..+++.|.+.++. -..+.. .++||..++.
T Consensus 81 QcvAs--hpet--r~~Fl--~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~-tEiiplCLri 153 (268)
T 2fv2_A 81 QCVAS--HPET--RSAFL--AAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLT-TEIIPLCLRI 153 (268)
T ss_dssp HHHHH--CTTT--HHHHH--HTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHH-TTHHHHHHHH
T ss_pred HHHHc--Ccch--hhHHH--HccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHh-hhHHHHHHHH
Confidence 77776 5544 55554 6666656666666431 134677889999999876542 222224 6899999999
Q ss_pred cccCCCHHHHHHHHHHHHHhccCcchHHHHH-------h-cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchH
Q 036338 242 LSLDSDRRLIEASLSCLITISSSKRAKTKLI-------N-HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLIT 313 (408)
Q Consensus 242 L~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~-------~-~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (408)
++.| +.-.+.-|+-.+..+-.++..-..+- . ..++..+|.-+.. ..++.+.
T Consensus 154 me~G-selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~--------------------~ps~RLL 212 (268)
T 2fv2_A 154 MESG-SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSK--------------------EPSARLL 212 (268)
T ss_dssp HHHS-CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTT--------------------SCCHHHH
T ss_pred Hhhc-cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhc--------------------CCChHHH
Confidence 9998 77777778887777765544222221 1 1233444444432 3478899
Q ss_pred HHHHHHHHHHhCCHHHHHHHHhh
Q 036338 314 EKALRLVEILSTTKQGRMEICQD 336 (408)
Q Consensus 314 ~~a~~~L~~L~~~~~~~~~~~~~ 336 (408)
....+.-..|+.++..|.++...
T Consensus 213 KhiircYlRLsdn~rar~aL~~~ 235 (268)
T 2fv2_A 213 KHVVRCYLRLSDNPRAREALRQC 235 (268)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHh
Confidence 99999999999999999888653
No 171
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=92.06 E-value=6.2 Score=35.01 Aligned_cols=173 Identities=13% Similarity=0.162 Sum_probs=102.6
Q ss_pred HHHHHhcCChh-H-HHHHHHHHHHhhhChhh-hhhhhhcCChHHHHHHHhhcCc----------chhhHHHHHHHHHHhc
Q 036338 105 IIRVAISKNED-F-SENLTKIVAFAKESDEN-KTFLAKFDGLVVMLVEILSNVN----------DVNMLKQVIRVLDLIL 171 (408)
Q Consensus 105 Lv~~L~s~~~~-~-~~Al~~L~~la~~~~~~-r~~i~~~~G~i~~Lv~lL~s~~----------~~~~~e~A~~~L~~L~ 171 (408)
.|+.|++.... + .+-+..|+.....++.. .+.+ .. ||+..|+.+|.... +...+..++.+|..+.
T Consensus 5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~-~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm 82 (233)
T 2f31_A 5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GA-EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 82 (233)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HH-HHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HH-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh
Confidence 45556554322 1 23344444433433332 2334 46 88888999986521 2233467778888777
Q ss_pred ccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc--h-hhHHhh---------hcChHHHHH
Q 036338 172 NKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD--S-KVKIAE---------RDGLLAETV 239 (408)
Q Consensus 172 ~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~--~-~~~i~~---------~~g~i~~Lv 239 (408)
. ....+..++. ....+..|+..|.+. +..+|..+..+|..+|..++ + ...+.+ ...-+.++|
T Consensus 83 n---~~~G~~~vl~--~~~~i~~l~~~L~s~-~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv 156 (233)
T 2f31_A 83 N---NKFGIKTMLE--TEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLL 156 (233)
T ss_dssp S---SHHHHHHHHT--SSSHHHHHHTTCCTT-SHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred C---ChHHHHHHHc--CcHHHHHHHHHhCCC-CchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHH
Confidence 5 3333355554 678899999999888 99999999999999987654 4 333311 123466788
Q ss_pred HhcccCCCHHHHHHHHHHHHHhccCcc-------hHHHHHhcCcHHHHHHHhcc
Q 036338 240 KSLSLDSDRRLIEASLSCLITISSSKR-------AKTKLINHKLITELGKLITD 286 (408)
Q Consensus 240 ~lL~~~~~~~~~~~A~~aL~~Ls~~~~-------n~~~~~~~G~i~~Lv~lL~~ 286 (408)
+.|++..+.+.+.+....+=.+..+.+ -|..+...|..+.| +-|+.
T Consensus 157 ~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il-~~l~~ 209 (233)
T 2f31_A 157 DGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL-QELRE 209 (233)
T ss_dssp HTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHH-HHHHH
T ss_pred HHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH-HHHhc
Confidence 888765456666555555555655443 24455556655544 44443
No 172
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=90.86 E-value=5.6 Score=37.66 Aligned_cols=119 Identities=15% Similarity=0.218 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHH
Q 036338 159 MLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAET 238 (408)
Q Consensus 159 ~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~L 238 (408)
+.-.+...|..| . +|++.+...+ +..++..+...+... +.+.-....++|...+....-+..=. ...+|.+
T Consensus 259 VvtR~FDLL~LL-m--HdSnAIDGFV---k~DGv~~I~TvinYp-N~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi 329 (619)
T 3c2g_A 259 VIIRTFDLLGLL-L--HDSDAIDGFV---RSDGVGAITTVVQYP-NNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFL 329 (619)
T ss_dssp HHHHHHHHHHHH-C--CSHHHHHHHH---HTTHHHHHHHHTTSS-CHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHH
T ss_pred HHHHHHHHHHHH-h--ccccccccee---ecccceeEEEEeecC-CcHHHHhhhheeeeecchHHHhhccc--cccchHH
Confidence 334455555444 4 6877655555 678899999999998 99999999999999885544332222 4578999
Q ss_pred HHhcccCCCHHHHHHHHHHHHHhccCcch-HHHHHhcCcHHHHHHHhcc
Q 036338 239 VKSLSLDSDRRLIEASLSCLITISSSKRA-KTKLINHKLITELGKLITD 286 (408)
Q Consensus 239 v~lL~~~~~~~~~~~A~~aL~~Ls~~~~n-~~~~~~~G~i~~Lv~lL~~ 286 (408)
+..++-..+.++.=...+.|.|...+... +...+..|+|+.|-+.+..
T Consensus 330 ~~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k 378 (619)
T 3c2g_A 330 LRLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK 378 (619)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred HHHhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence 99887444778999999999999988775 4455589999999988753
No 173
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=90.86 E-value=5.4 Score=37.05 Aligned_cols=160 Identities=11% Similarity=0.128 Sum_probs=92.0
Q ss_pred hHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHhccCccc---HHHHHHHHhcCCChHHHHHHHHHHHHh
Q 036338 143 LVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDC---LNSLLLVLKQQESVDSRIESLRLLEFI 218 (408)
Q Consensus 143 ~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~---i~~Lv~lL~~~~~~~~~~~Aa~~L~~L 218 (408)
.+..+.+++ +.. +.. --++.+|+.+.. +..- ...+.. +.+. +..+...+....++..+.-+++++.|+
T Consensus 104 ~l~~l~kil-~WP~~~~--fPvLDLlRl~~l--~p~~--~~~~~~-~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~Nl 175 (304)
T 3ebb_A 104 QLQILWKAI-NCPEDIV--FPALDILRLSIK--HPSV--NENFCN-EKEGAQFSSHLINLLNPKGKPANQLLALRTFCNC 175 (304)
T ss_dssp HHHHHHHHH-TSCTTTC--HHHHHHHHHHTT--SHHH--HHHHHS-TTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHH-cCCHHhH--HHHHHHHHHHHc--CccH--HHHhhc-cccchHHHHHHHHhcCCCCChHHHHHHHHHHHHc
Confidence 456666665 333 333 666777766654 2222 233321 1111 222223332222566788899999999
Q ss_pred hcCcchhhHHhh-hcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcc---hHHHHHhcCcHHHHHHHhccCCCCCCCC
Q 036338 219 AGDADSKVKIAE-RDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKR---AKTKLINHKLITELGKLITDGHNGNGSG 294 (408)
Q Consensus 219 a~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~---n~~~~~~~G~i~~Lv~lL~~~~~~~~~~ 294 (408)
-.++..+..+.. ...+++.+...+.+. +..++.+++..++|++.... .... ..-++..+..++..
T Consensus 176 F~~~~g~~~l~~~~~~il~~~~~~~~~~-nknl~iA~ATl~~NlAv~~~~~~~~~~--~~~ll~~l~~il~~-------- 244 (304)
T 3ebb_A 176 FVGQAGQKLMMSQRESLMSHAIELKSGS-NKNIHIALATLALNYSVCFHKDHNIEG--KAQCLSLISTILEV-------- 244 (304)
T ss_dssp GGSHHHHHHHHHTHHHHHHHHHGGGSSC-CHHHHHHHHHHHHHHHHHHHHSCCHHH--HHHHHHHHHHHHTT--------
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHhhcCCchH--HHHHHHHHHHHHhc--------
Confidence 988888877663 223555555555554 77899999999999986321 1111 11134444455543
Q ss_pred CCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHH
Q 036338 295 NGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEI 333 (408)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 333 (408)
..+.+....++.+|.+|...+....++
T Consensus 245 ------------~~d~EalyR~LvALGtL~~~~~~~~~l 271 (304)
T 3ebb_A 245 ------------VQDLEATFRLLVALGTLISDDSNAVQL 271 (304)
T ss_dssp ------------CCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ------------cCCHHHHHHHHHHHHHHHhCChhHHHH
Confidence 237789999999999998653333333
No 174
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=88.77 E-value=17 Score=34.81 Aligned_cols=173 Identities=13% Similarity=0.165 Sum_probs=103.5
Q ss_pred HHHHHhcCChh-H-HHHHHHHHHHhhhChhh-hhhhhhcCChHHHHHHHhhcCc----------chhhHHHHHHHHHHhc
Q 036338 105 IIRVAISKNED-F-SENLTKIVAFAKESDEN-KTFLAKFDGLVVMLVEILSNVN----------DVNMLKQVIRVLDLIL 171 (408)
Q Consensus 105 Lv~~L~s~~~~-~-~~Al~~L~~la~~~~~~-r~~i~~~~G~i~~Lv~lL~s~~----------~~~~~e~A~~~L~~L~ 171 (408)
.|+.|++.... + .+-+..|+.....++.. ...+. . +|+..|+.+|..-. +......++.+|..+.
T Consensus 9 yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~-~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm 86 (386)
T 2bnx_A 9 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-A-EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 86 (386)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-H-HHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-H-hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence 45566655332 2 22344454444443332 22333 5 78888999885421 2233467778888777
Q ss_pred ccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc--h-hhHHhh---------hcChHHHHH
Q 036338 172 NKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD--S-KVKIAE---------RDGLLAETV 239 (408)
Q Consensus 172 ~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~--~-~~~i~~---------~~g~i~~Lv 239 (408)
. ....+..++. ...++..|+..|.+. +..++..+..+|..+|..++ + ...+.. ...-+.+||
T Consensus 87 N---~~~Gl~~vl~--~~~~i~~l~~sL~s~-~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv 160 (386)
T 2bnx_A 87 N---NKFGIKTMLE--TEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLL 160 (386)
T ss_dssp S---SHHHHHHHHH--SSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred C---CHHHHHHHHc--CcHHHHHHHHHhCCC-CchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHH
Confidence 5 3333355554 778899999998887 89999999999999988654 3 222211 123466788
Q ss_pred HhcccCCCHHHHHHHHHHHHHhccCcc-------hHHHHHhcCcHHHHHHHhcc
Q 036338 240 KSLSLDSDRRLIEASLSCLITISSSKR-------AKTKLINHKLITELGKLITD 286 (408)
Q Consensus 240 ~lL~~~~~~~~~~~A~~aL~~Ls~~~~-------n~~~~~~~G~i~~Lv~lL~~ 286 (408)
..++++.+.+.+.+.+..+-.|..+.+ -|..+...|..+.| +-|+.
T Consensus 161 ~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il-~~Lr~ 213 (386)
T 2bnx_A 161 DGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL-QELRE 213 (386)
T ss_dssp HHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHH-HHHTT
T ss_pred HHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHH-HHHhc
Confidence 888865466666555555555655443 24555566665554 55553
No 175
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=88.67 E-value=0.54 Score=34.04 Aligned_cols=44 Identities=11% Similarity=0.235 Sum_probs=33.1
Q ss_pred CCCcccccCccccCCCceecC----CCCcccHhhHHHHHhc----CCCCCCC
Q 036338 10 VPSFFRCPISLDVMKSPVSLC----TGVTYDRASIQRWLDS----GNNTCPA 53 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~dPv~~~----cgh~f~r~cI~~~~~~----~~~~CP~ 53 (408)
....+.|.+|++-+.|.-.+. -+|.||-.|-..+++. +.-+||.
T Consensus 12 ~~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 12 NSGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp SCCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CCCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 345689999999999965543 4799999998888864 2235665
No 176
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=87.69 E-value=19 Score=38.73 Aligned_cols=110 Identities=12% Similarity=0.074 Sum_probs=69.1
Q ss_pred HHHHHHHHh------cCCChHHHHHHHHHHHHhhcCcchhhH-Hh---hhcChHHHHHH----hcccC--CCHHHHHHHH
Q 036338 192 LNSLLLVLK------QQESVDSRIESLRLLEFIAGDADSKVK-IA---ERDGLLAETVK----SLSLD--SDRRLIEASL 255 (408)
Q Consensus 192 i~~Lv~lL~------~~~~~~~~~~Aa~~L~~La~~~~~~~~-i~---~~~g~i~~Lv~----lL~~~--~~~~~~~~A~ 255 (408)
++.+-..|. +. +...|+.|..++..++.....+.. +. ......+.|++ .|.+. .++.++..|+
T Consensus 401 l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~ 479 (960)
T 1wa5_C 401 LAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAI 479 (960)
T ss_dssp HHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHH
T ss_pred HHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHH
Confidence 344444455 44 677889999999999864321110 00 00023333333 33443 2789999999
Q ss_pred HHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCC
Q 036338 256 SCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILSTT 326 (408)
Q Consensus 256 ~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~ 326 (408)
++|..++..-. . .. -..+++.++..|.++ +..++..|+.+|.+++..
T Consensus 480 ~~lg~~~~~~~-~-~~-l~~~l~~l~~~L~d~---------------------~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 480 KYIYTFRNQLT-K-AQ-LIELMPILATFLQTD---------------------EYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHHHHTGGGSC-H-HH-HHHHHHHHHHHTTCS---------------------CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhCC-H-HH-HHHHHHHHHHHhCCC---------------------ChhHHHHHHHHHHHHHhc
Confidence 99999987531 1 11 234677888888643 688999999999999863
No 177
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=87.28 E-value=6 Score=43.24 Aligned_cols=119 Identities=7% Similarity=0.093 Sum_probs=71.1
Q ss_pred hhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCC----ChHHHHHHHHHHHHhhcCcchhhHHhhhc
Q 036338 157 VNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQE----SVDSRIESLRLLEFIAGDADSKVKIAERD 232 (408)
Q Consensus 157 ~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~----~~~~~~~Aa~~L~~La~~~~~~~~i~~~~ 232 (408)
=+..|.++.+++.++.+..++.. +..+ ..+++.|+.++.... ...++..++++|+..+.--....... .
T Consensus 467 W~~~EA~~~a~gaIa~~~~~~~e-~~~l----~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~ 539 (1023)
T 4hat_C 467 WHNINTLSWAIGSISGTMSEDTE-KRFV----VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--R 539 (1023)
T ss_dssp HHHHHHHHHHHHHTTTSSCHHHH-HHHH----HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--H
T ss_pred HHHHHHHHHHHHHHHcCCCchhH-HHHH----HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--H
Confidence 34559999999998863222211 3333 367888999887421 22344556788877664322222222 2
Q ss_pred ChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHh------cCcHHHHHHHhc
Q 036338 233 GLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLIN------HKLITELGKLIT 285 (408)
Q Consensus 233 g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~------~G~i~~Lv~lL~ 285 (408)
..+..|+..+.+. ++.++.+|++||.+||.. .+..++. .--++.++..+.
T Consensus 540 ~vl~~L~~~l~~~-~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~ 595 (1023)
T 4hat_C 540 TVILKLFEFMHET-HEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQ 595 (1023)
T ss_dssp HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHH
T ss_pred HHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHH
Confidence 3566666666654 788999999999999974 3344442 124555555443
No 178
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=85.47 E-value=3.7 Score=37.21 Aligned_cols=143 Identities=9% Similarity=0.076 Sum_probs=83.5
Q ss_pred HHHHHhcCChh-HHHHHHHHHHHhhhChh----hhhhhhhcCChHHHHHHH-hhcCcchhhHHHHHHHHHHhcccccchH
Q 036338 105 IIRVAISKNED-FSENLTKIVAFAKESDE----NKTFLAKFDGLVVMLVEI-LSNVNDVNMLKQVIRVLDLILNKIEDQQ 178 (408)
Q Consensus 105 Lv~~L~s~~~~-~~~Al~~L~~la~~~~~----~r~~i~~~~G~i~~Lv~l-L~s~~~~~~~e~A~~~L~~L~~~~~~~~ 178 (408)
+-+.+...+.. +..++..|..++..... +..........+|.|+.= |.+.. ..+.+.|+.+|..+.. ....
T Consensus 60 lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k-~~~~~~a~~~l~~~~~--~~~~ 136 (278)
T 4ffb_C 60 FAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSSR-ATTKTQSMSCILSLCG--LDTS 136 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCCC-HHHHHHHHHHHHHHHH--TSSS
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHH--hcCc
Confidence 33455566665 77788888887753211 111111111456777754 44443 3334666666655542 1111
Q ss_pred HHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcch-----hhHHhhhcChHHHHHHhcccCCCHHHHHH
Q 036338 179 HLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADS-----KVKIAERDGLLAETVKSLSLDSDRRLIEA 253 (408)
Q Consensus 179 ~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~-----~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 253 (408)
..-.++.++..+.+. ++.++..++..|..+...... +..+ ..+++.+.++|.+. ++.+|.+
T Consensus 137 ---------~~~~~e~l~~~l~~K-npkv~~~~l~~l~~~l~~fg~~~~~~k~~l---~~i~~~l~k~l~d~-~~~VR~a 202 (278)
T 4ffb_C 137 ---------ITQSVELVIPFFEKK-LPKLIAAAANCVYELMAAFGLTNVNVQTFL---PELLKHVPQLAGHG-DRNVRSQ 202 (278)
T ss_dssp ---------SHHHHHHHGGGGGCS-CHHHHHHHHHHHHHHHHHHTTTTCCHHHHH---HHHGGGHHHHHTCS-SHHHHHH
T ss_pred ---------HHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHhCCCcCCchhHH---HHHHHHHHHHHhCC-cHHHHHH
Confidence 111244555567777 999999988888877543211 1111 23556778888886 9999999
Q ss_pred HHHHHHHhccC
Q 036338 254 SLSCLITISSS 264 (408)
Q Consensus 254 A~~aL~~Ls~~ 264 (408)
|..++..+-..
T Consensus 203 A~~l~~~ly~~ 213 (278)
T 4ffb_C 203 TMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHH
Confidence 99999888654
No 179
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=83.86 E-value=11 Score=40.60 Aligned_cols=130 Identities=11% Similarity=0.035 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHH---h--cCCChHHHHHHHHHHHHhhcCcchhhHHhhhc
Q 036338 158 NMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVL---K--QQESVDSRIESLRLLEFIAGDADSKVKIAERD 232 (408)
Q Consensus 158 ~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL---~--~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~ 232 (408)
+..|.|+.+|..++.. -... ....++.++.++ . .. +..+|..++++|..++..-....... .
T Consensus 479 ~~~eaal~~l~~iae~--~~~~--------~~~~l~~l~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l--~ 545 (971)
T 2x1g_F 479 TKLEACIYSFQSVAEH--FGGE--------EKRQIPRLMRVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYI--P 545 (971)
T ss_dssp HHHHHHHHHHHHTTTC----------------CHHHHHHHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CH--H
T ss_pred HHHHHHHHHHHHHHhh--cChh--------hhHHHHHHHHHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHH--H
Confidence 3458888999888752 1111 112344444444 2 24 67899999999999985422111222 2
Q ss_pred ChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHH--hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCc
Q 036338 233 GLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLI--NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTV 310 (408)
Q Consensus 233 g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~--~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (408)
.+++.|+..| + +.++..|+.||.+|+..- +..+. -...+..|..++..+ .-+.
T Consensus 546 ~vl~~l~~~l-~---~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~-------------------~~~~ 600 (971)
T 2x1g_F 546 PAINLLVRGL-N---SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTG-------------------RMKN 600 (971)
T ss_dssp HHHHHHHHHH-H---SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHST-------------------TSCH
T ss_pred HHHHHHHHHh-C---hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCC-------------------CCCh
Confidence 4677777777 3 468999999999999543 33343 234555666666642 2245
Q ss_pred chHHHHHHHHHHHhC
Q 036338 311 LITEKALRLVEILST 325 (408)
Q Consensus 311 ~~~~~a~~~L~~L~~ 325 (408)
..++.+..++..++.
T Consensus 601 ~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 601 SDSVRLMFSIGKLMS 615 (971)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 667777777776654
No 180
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=82.91 E-value=0.27 Score=29.76 Aligned_cols=17 Identities=24% Similarity=0.407 Sum_probs=13.4
Q ss_pred CcccccCccccCCCcee
Q 036338 12 SFFRCPISLDVMKSPVS 28 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~ 28 (408)
+-|+||+|...+.+|-.
T Consensus 4 EGFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 4 EGFICPQCMKSLGSADE 20 (34)
T ss_dssp EEEECTTTCCEESSHHH
T ss_pred cccCCcHHHHHcCCHHH
Confidence 35899999998888754
No 181
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=82.25 E-value=14 Score=33.50 Aligned_cols=66 Identities=20% Similarity=0.189 Sum_probs=50.5
Q ss_pred cHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChH---HHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338 191 CLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLL---AETVKSLSLDSDRRLIEASLSCLITISS 263 (408)
Q Consensus 191 ~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i---~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~ 263 (408)
+++.++.-+++. +..+|+..+..|..+-...... . ..++ +.+.+++.+. |..++.+|+.++..+-.
T Consensus 168 v~~~l~~g~ksK-N~R~R~e~l~~l~~li~~~G~~----~-~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 168 MTPMLLDALKSK-NARQRSECLLVIEYYITNAGIS----P-LKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHCSG----G-GGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccC-CHHHHHHHHHHHHHHHHhcCCC----c-cccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 456666777888 9999999998888886443222 1 3467 9999999987 99999999999886644
No 182
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=82.08 E-value=47 Score=35.63 Aligned_cols=188 Identities=12% Similarity=0.132 Sum_probs=108.3
Q ss_pred HHHHHHhcC---Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccch--
Q 036338 104 DIIRVAISK---NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQ-- 177 (408)
Q Consensus 104 ~Lv~~L~s~---~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~-- 177 (408)
.++..+.+. ++- |..|++.|..++..- ..+.+. .+++.++..|.+++ ..++..|+.+|.+++. ..+
T Consensus 459 ~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~l~---~~l~~l~~~L~d~~-~~V~~~A~~Al~~~~~--~~~~~ 530 (960)
T 1wa5_C 459 EIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQLI---ELMPILATFLQTDE-YVVYTYAAITIEKILT--IRESN 530 (960)
T ss_dssp HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHHHH---HHHHHHHHHTTCSC-HHHHHHHHHHHHHHTT--CBSCS
T ss_pred HhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHHHHH---HHHHHHHHHhCCCC-hhHHHHHHHHHHHHHh--ccccc
Confidence 345556665 555 888999999987652 122222 46788888887654 4556999999999875 211
Q ss_pred -----HHHHHHHhccCcccHHHHHHHHhcCCC---h--HHHHHHHHHHHHhhcC--cchhhHHhhhcChHHHHHHhcc--
Q 036338 178 -----QHLMNLILKRDQDCLNSLLLVLKQQES---V--DSRIESLRLLEFIAGD--ADSKVKIAERDGLLAETVKSLS-- 243 (408)
Q Consensus 178 -----~~~~~~i~~~~~g~i~~Lv~lL~~~~~---~--~~~~~Aa~~L~~La~~--~~~~~~i~~~~g~i~~Lv~lL~-- 243 (408)
+-.+..+.-.-...++.|+.++... + . ...+.+..+|..++.. ++... .. ...++.|+..+.
T Consensus 531 ~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~-~~~~~~~~~~e~l~~al~~vv~~~~~~~~p-~~--~~l~~~L~~~l~~~ 606 (960)
T 1wa5_C 531 TSPAFIFHKEDISNSTEILLKNLIALILKH-GSSPEKLAENEFLMRSIFRVLQTSEDSIQP-LF--PQLLAQFIEIVTIM 606 (960)
T ss_dssp SSCCBSSCGGGTTTTHHHHHHHHHHHHHTT-CCCHHHHTSCHHHHHHHHHHHHHHTTTTGG-GH--HHHHHHHHHHHHHH
T ss_pred ccccccccHHHhhhhHHHHHHHHHHHHHhc-cCCCCcccccHHHHHHHHHHHHHHHHhhhh-HH--HHHHHHHHHHHHHH
Confidence 1002223200134566777777764 1 1 1335666677665432 22222 11 124555555553
Q ss_pred --cCCCHHHHHHHHHHHHHhccC-cchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHH
Q 036338 244 --LDSDRRLIEASLSCLITISSS-KRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLV 320 (408)
Q Consensus 244 --~~~~~~~~~~A~~aL~~Ls~~-~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L 320 (408)
++.++........+|..+... ......-.+.-.+|.+...|... .....+.+..++
T Consensus 607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~---------------------~~~~~~~~~~i~ 665 (960)
T 1wa5_C 607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSED---------------------IQEFIPYVFQII 665 (960)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTT---------------------CTTTHHHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhh---------------------hHhhHHHHHHHH
Confidence 344667777788888877764 22223334556788888888753 335666666666
Q ss_pred HHHh
Q 036338 321 EILS 324 (408)
Q Consensus 321 ~~L~ 324 (408)
..+.
T Consensus 666 ~~l~ 669 (960)
T 1wa5_C 666 AFVV 669 (960)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 183
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=80.48 E-value=0.069 Score=40.30 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=26.7
Q ss_pred ccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338 14 FRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
..||.|+..|. + .-|+.+|..|=..+.. ...||.|++++.
T Consensus 33 ~~CP~Cq~eL~-~---~g~~~hC~~C~~~f~~--~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLD-Q---DNGHARCRSCGEFIEM--KALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEE-E---ETTEEEETTTCCEEEE--EEECTTTCSBCE
T ss_pred ccCccCCCcce-e---cCCEEECccccchhhc--cccCcchhhHHH
Confidence 68999998775 2 2455558888332211 246999998864
No 184
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=79.19 E-value=2.7 Score=31.86 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=42.3
Q ss_pred CCCCCCcccccCccccCCCceecC-CCC-----cccHhhHHHHHhcCCCCCCCcccccCCCCC
Q 036338 7 YITVPSFFRCPISLDVMKSPVSLC-TGV-----TYDRASIQRWLDSGNNTCPATMQVLQSKEF 63 (408)
Q Consensus 7 ~~~~~~~~~Cpi~~~~~~dPv~~~-cgh-----~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l 63 (408)
..-.++.++|||++++-..=|.+. .+. -|++..+.+...+|. .-|.+|++++...+
T Consensus 21 f~C~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~-~HPLSREpit~sMI 82 (102)
T 2kkx_A 21 LQCPLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGL-PHPLTREPITASII 82 (102)
T ss_dssp TTCCTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTC-CCTTTCCCCCTTTE
T ss_pred ccCCHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCC-CCCCccCCCCHhhE
Confidence 344567899999999999888764 222 488999999988654 47999998876543
No 185
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=77.32 E-value=15 Score=39.34 Aligned_cols=150 Identities=11% Similarity=0.086 Sum_probs=88.3
Q ss_pred hhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHH---hcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcC
Q 036338 157 VNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVL---KQQESVDSRIESLRLLEFIAGDADSKVKIAERDG 233 (408)
Q Consensus 157 ~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL---~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g 233 (408)
-+..|.++.+|+.++....+. ....++.++..| ..+ +..+|..++++|..++..-....... ..
T Consensus 463 w~~~eaal~al~~i~~~~~~~----------~~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~~~~~l~~~~~~l--~~ 529 (963)
T 2x19_B 463 WQHTEALLYGFQSIAETIDVN----------YSDVVPGLIGLIPRISIS-NVQLADTVMFTIGALSEWLADHPVMI--NS 529 (963)
T ss_dssp HHHHHHHHHHHHHHTTSCCSS----------CCSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHHTHHHHHHCHHHH--TT
T ss_pred hHHHHHHHHHHHHHHhhcCch----------hhHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHHHHHHHhCHHHH--HH
Confidence 344578888888877521111 122344444444 234 67899999999999886422112232 35
Q ss_pred hHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHH--hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcc
Q 036338 234 LLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLI--NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVL 311 (408)
Q Consensus 234 ~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~--~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (408)
+++.|+..|.+ +.++..|+.+|.+++..- +..+. -...+..|..++... .-+..
T Consensus 530 vl~~l~~~l~~---~~V~~~A~~al~~l~~~~--~~~l~p~~~~il~~l~~~l~~~-------------------~~~~~ 585 (963)
T 2x19_B 530 VLPLVLHALGN---PELSVSSVSTLKKICREC--KYDLPPYAANIVAVSQDVLMKQ-------------------IHKTS 585 (963)
T ss_dssp THHHHHHHTTC---GGGHHHHHHHHHHHHHHT--GGGCTTTHHHHHHHHHHHHHTT-------------------CSCHH
T ss_pred HHHHHHHHhCC---chHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHhccC-------------------CCChH
Confidence 78999998854 689999999999999632 22222 123344445555532 12456
Q ss_pred hHHHHHHHHHHHhCC--HHHHHHHHhhcCchHHHHH
Q 036338 312 ITEKALRLVEILSTT--KQGRMEICQDAALLNGVVQ 345 (408)
Q Consensus 312 ~~~~a~~~L~~L~~~--~~~~~~~~~~~g~i~~lv~ 345 (408)
.+..+..++..++.. ++.+..... ..++.+.+
T Consensus 586 ~~~~~~eai~~i~~~~~~~~~~~~~~--~l~~~l~~ 619 (963)
T 2x19_B 586 QCMWLMQALGFLLSALQVEEILKNLH--SLISPYIQ 619 (963)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHHHH
Confidence 777778888887652 355554443 23444444
No 186
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=77.16 E-value=15 Score=36.26 Aligned_cols=75 Identities=8% Similarity=0.109 Sum_probs=58.6
Q ss_pred hcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHH
Q 036338 200 KQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITE 279 (408)
Q Consensus 200 ~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~ 279 (408)
..| +...|.-|+..|...-.+-.. +. ..+|..++++..+. +..+|..|.+.|..+|.. ++..+ +++.
T Consensus 38 ~kg-~~k~K~LaaQ~I~kffk~FP~---l~--~~Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~-~~i~k-----iaDv 104 (507)
T 3u0r_A 38 VKG-GTKEKRLAAQFIPKFFKHFPE---LA--DSAINAQLDLCEDE-DVSIRRQAIKELPQFATG-ENLPR-----VADI 104 (507)
T ss_dssp GGS-CHHHHHHHHHHHHHHGGGCGG---GH--HHHHHHHHHHHTCS-SHHHHHHHHHHGGGGCCT-TCHHH-----HHHH
T ss_pred cCC-CHHHHHHHHHHHHHHHhhChh---hH--HHHHHHHHHHHhcc-cHHHHHHHHHhhHHHhhh-hhhhh-----HHHH
Confidence 356 889999999999977654321 22 34688999999997 999999999999999998 66555 4578
Q ss_pred HHHHhccC
Q 036338 280 LGKLITDG 287 (408)
Q Consensus 280 Lv~lL~~~ 287 (408)
|++||+++
T Consensus 105 L~QlLqtd 112 (507)
T 3u0r_A 105 LTQLLQTD 112 (507)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhcc
Confidence 99999863
No 187
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=77.02 E-value=76 Score=33.73 Aligned_cols=151 Identities=17% Similarity=0.175 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc--chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHH
Q 036338 116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN--DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLN 193 (408)
Q Consensus 116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~--~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~ 193 (408)
+..++..+..++..-... .. ..++.++..|..-. ...+...++++|..++....+. .+.+ ...++
T Consensus 466 ~eaal~al~~i~~~~~~~-----~~-~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~---~~~l----~~vl~ 532 (963)
T 2x19_B 466 TEALLYGFQSIAETIDVN-----YS-DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADH---PVMI----NSVLP 532 (963)
T ss_dssp HHHHHHHHHHHTTSCCSS-----CC-SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHC---HHHH----TTTHH
T ss_pred HHHHHHHHHHHHhhcCch-----hh-HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhC---HHHH----HHHHH
Confidence 666788888887653221 12 45566666653322 3445688889998876521111 1233 36788
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhh-hcChHHHHHHhcccC-CCHHHHHHHHHHHHHhccCc--chHH
Q 036338 194 SLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAE-RDGLLAETVKSLSLD-SDRRLIEASLSCLITISSSK--RAKT 269 (408)
Q Consensus 194 ~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~-~~g~i~~Lv~lL~~~-~~~~~~~~A~~aL~~Ls~~~--~n~~ 269 (408)
.|+..|. +..++..|+.+|.+++... +..+.. -...+..|..++..+ .+...+.....++..+...- +...
T Consensus 533 ~l~~~l~---~~~V~~~A~~al~~l~~~~--~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 533 LVLHALG---NPELSVSSVSTLKKICREC--KYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHTT---CGGGHHHHHHHHHHHHHHT--GGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHhC---CchHHHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 8888874 4688999999999999532 232321 123455556666643 25688889999999887643 3333
Q ss_pred HHHhcCcHHHHHHHhc
Q 036338 270 KLINHKLITELGKLIT 285 (408)
Q Consensus 270 ~~~~~G~i~~Lv~lL~ 285 (408)
..+ ...++++...+.
T Consensus 608 ~~~-~~l~~~l~~~l~ 622 (963)
T 2x19_B 608 KNL-HSLISPYIQQLE 622 (963)
T ss_dssp HHH-HHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHH
Confidence 333 336666666554
No 188
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=76.40 E-value=3 Score=31.27 Aligned_cols=49 Identities=18% Similarity=0.130 Sum_probs=35.9
Q ss_pred CCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCC
Q 036338 11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSK 61 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~ 61 (408)
-.-+.|-.|=...+.= +-...|.+|..|+...+.. ...||+|+.++..+
T Consensus 26 ~G~~nCKsCWf~~k~L-V~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 26 LGPQFCKSCWFENKGL-VECNNHYLCLNCLTLLLSV-SNRCPICKMPLPTK 74 (99)
T ss_dssp SCCCCCCSSCSCCSSE-EECSSCEEEHHHHHHTCSS-SSEETTTTEECCCC
T ss_pred cCcccChhhccccCCe-eeecchhhHHHHHHHHHhh-ccCCcccCCcCCcc
Confidence 3447799887665533 2355699999999988774 55799999988543
No 189
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=75.00 E-value=1.3 Score=30.60 Aligned_cols=44 Identities=7% Similarity=0.077 Sum_probs=31.0
Q ss_pred CCCCCCcccccCCCCCc-cc--HHHHHHHHHHHHhcCCCCCCCCCCCC
Q 036338 48 NNTCPATMQVLQSKEFV-PN--RTLQRLIQIWSDSVQHRVDSSESATG 92 (408)
Q Consensus 48 ~~~CP~~~~~l~~~~l~-~n--~~l~~~I~~~~~~~~~~~~~~~~~~~ 92 (408)
+..||.|++.+.+.-+. ++ ..-++.|++|..+++ +.|.+..+++
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~-~cP~t~~~L~ 49 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG-NDPITNEPLS 49 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS-BCTTTCCBCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCC-CCcCCcCCCC
Confidence 35799999988765444 32 234889999999876 4777776665
No 190
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=73.24 E-value=36 Score=37.00 Aligned_cols=101 Identities=5% Similarity=0.076 Sum_probs=59.9
Q ss_pred chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcC----CChHHHHHHHHHHHHhhcCcchhhHHhhh
Q 036338 156 DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQ----ESVDSRIESLRLLEFIAGDADSKVKIAER 231 (408)
Q Consensus 156 ~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~----~~~~~~~~Aa~~L~~La~~~~~~~~i~~~ 231 (408)
+-+..|.++.+++.++........ +..+ ...++.|+.+.... ...-++..+++++...+..-.......
T Consensus 466 ~W~~~eaal~algsia~~~~~~~e-~~~l----~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l-- 538 (1049)
T 3m1i_C 466 SWHNINTLSWAIGSISGTMSEDTE-KRFV----VTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL-- 538 (1049)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHH-HHHH----HHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--
T ss_pred CHHHHHHHHHHHHHHhcccCchhh-HHHH----HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH--
Confidence 334568899999988642222211 1212 23455555543321 022334457788887764322222232
Q ss_pred cChHHHHHHhcccCCCHHHHHHHHHHHHHhccC
Q 036338 232 DGLLAETVKSLSLDSDRRLIEASLSCLITISSS 264 (408)
Q Consensus 232 ~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~ 264 (408)
..+++.|+..|.+. ++.++..|+.||.+++..
T Consensus 539 ~~vl~~ll~~l~~~-~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 539 RTVILKLFEFMHET-HEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 24688888888876 899999999999999984
No 191
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=72.24 E-value=10 Score=33.48 Aligned_cols=77 Identities=17% Similarity=0.174 Sum_probs=58.4
Q ss_pred cccHHHHHHHHhc----CC------ChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHH
Q 036338 189 QDCLNSLLLVLKQ----QE------SVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCL 258 (408)
Q Consensus 189 ~g~i~~Lv~lL~~----~~------~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL 258 (408)
.+++..|+..|.. +. +...+.....+|..+..+..+...+......+..|+..|.+. ++.++..++..|
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~-~~~~r~~~leLL 120 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLL 120 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTT-SHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCC-CchHHHHHHHHH
Confidence 4667777777653 10 234456788888888877777777777688999999999876 899999999999
Q ss_pred HHhccCcc
Q 036338 259 ITISSSKR 266 (408)
Q Consensus 259 ~~Ls~~~~ 266 (408)
..+|..++
T Consensus 121 ~~lc~~~~ 128 (233)
T 2f31_A 121 SALCILPQ 128 (233)
T ss_dssp HHHHTCSS
T ss_pred HHHHhCCC
Confidence 99988654
No 192
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=71.65 E-value=71 Score=34.87 Aligned_cols=89 Identities=8% Similarity=-0.004 Sum_probs=57.7
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhccc------CCCHHHHHHHHHHHHHhccCcchHH
Q 036338 196 LLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSL------DSDRRLIEASLSCLITISSSKRAKT 269 (408)
Q Consensus 196 v~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~------~~~~~~~~~A~~aL~~Ls~~~~n~~ 269 (408)
.+.+..+ +.+.+.-+.++|+|+.. ...++.|.+++.. ....+++.+|++||+++.......
T Consensus 446 ~~~~~~~-~~~~~~~~LkaLGN~g~-----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~- 512 (1056)
T 1lsh_A 446 SQSSDRA-KEEEIVLALKALGNAGQ-----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK- 512 (1056)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHTC-----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-
T ss_pred HHHHhcC-ChHHHHHHHHHhhccCC-----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH-
Confidence 3444566 77788889999999763 2357778888742 124578889999999998643211
Q ss_pred HHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHH
Q 036338 270 KLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEI 322 (408)
Q Consensus 270 ~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~ 322 (408)
+-+.|+.+..+. ..+.+++-.|..+|..
T Consensus 513 ------v~~il~~i~~n~-------------------~e~~EvRiaA~~~Lm~ 540 (1056)
T 1lsh_A 513 ------VQEIVLPIFLNV-------------------AIKSELRIRSCIVFFE 540 (1056)
T ss_dssp ------HHHHHHHHHHCT-------------------TSCHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhcCC-------------------CCChHHHHHHHHHHHH
Confidence 234577777654 3456666666655543
No 193
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=70.05 E-value=1.3 Score=25.53 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=12.0
Q ss_pred CcccccCccccCCCcee
Q 036338 12 SFFRCPISLDVMKSPVS 28 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~ 28 (408)
..|.||+|+..|-||=+
T Consensus 2 ~k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 2 SDFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CCEECTTSSCEESSHHH
T ss_pred CcccCccccccCcChHH
Confidence 45778888887777643
No 194
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=69.70 E-value=8.4 Score=42.05 Aligned_cols=99 Identities=6% Similarity=-0.092 Sum_probs=60.1
Q ss_pred ChHHHHHHHHHHHHhhcCcchh-hHHhhhcChHHHHHHhcccCC----CHHHHHHHHHHHHHhccCcchHHHHHhcCcHH
Q 036338 204 SVDSRIESLRLLEFIAGDADSK-VKIAERDGLLAETVKSLSLDS----DRRLIEASLSCLITISSSKRAKTKLINHKLIT 278 (408)
Q Consensus 204 ~~~~~~~Aa~~L~~La~~~~~~-~~i~~~~g~i~~Lv~lL~~~~----~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~ 278 (408)
+...++.++++++.++...... ..-.. ..+++.|+.++.... ...++..++++|...+..-..... .++
T Consensus 466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~-----~L~ 539 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN-----FLR 539 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH-----HHH
T ss_pred CHHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH-----HHH
Confidence 7889999999999998765322 21112 347899999886421 223334555666665553222122 244
Q ss_pred HHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 279 ELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 279 ~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
+++..|-.. -.+..+.+++.|+.++.+|+.
T Consensus 540 ~vl~~L~~~-----------------l~~~~~~v~~~A~~al~~l~~ 569 (1023)
T 4hat_C 540 TVILKLFEF-----------------MHETHEGVQDMACDTFIKIVQ 569 (1023)
T ss_dssp HHHHHHHHH-----------------TTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----------------hhcCCHHHHHHHHHHHHHHHH
Confidence 444443321 002257899999999999986
No 195
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=69.33 E-value=10 Score=31.68 Aligned_cols=91 Identities=13% Similarity=0.231 Sum_probs=64.0
Q ss_pred cHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc--hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchH
Q 036338 191 CLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD--SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAK 268 (408)
Q Consensus 191 ~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~ 268 (408)
++..|.+.|.++ +..++..|..+|..+..+.. ....|+. ..++..|++++....++.+++.++..|..-...-.+.
T Consensus 53 A~ral~krl~~~-n~~vql~AL~LLd~~vkNcG~~Fh~evas-~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~ 130 (163)
T 1x5b_A 53 CLKAIMKRVNHK-VPHVALQALTLLGACVANCGKIFHLEVCS-RDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKD 130 (163)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHTCHHHHHHHTS-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHhhHHHHHHHhh-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 355677778888 99999999999999988743 4455655 6799999999986457899999998887665432211
Q ss_pred HHHHhcCcHHHHHHHhcc
Q 036338 269 TKLINHKLITELGKLITD 286 (408)
Q Consensus 269 ~~~~~~G~i~~Lv~lL~~ 286 (408)
. +.+.|..+...|..
T Consensus 131 ~---~l~~i~~~Y~~Lk~ 145 (163)
T 1x5b_A 131 P---QFSLISATIKSMKE 145 (163)
T ss_dssp S---TTHHHHHHHHHHHT
T ss_pred c---ccHHHHHHHHHHHH
Confidence 1 22345556666654
No 196
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=68.75 E-value=2.7 Score=33.19 Aligned_cols=51 Identities=8% Similarity=0.112 Sum_probs=39.3
Q ss_pred CcccccCccccCCC---ceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCC
Q 036338 12 SFFRCPISLDVMKS---PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEF 63 (408)
Q Consensus 12 ~~~~Cpi~~~~~~d---Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l 63 (408)
+-|.|..|...+.| +....-|.-||+.|-.+.+.. ...|-.|++++....+
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~-~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC-CCSSSCSSCCSCCEES
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC-CCccccCCCCcCchhe
Confidence 34899999999974 566679999999998887652 2369999988765443
No 197
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=68.43 E-value=1.3e+02 Score=32.07 Aligned_cols=179 Identities=15% Similarity=0.085 Sum_probs=102.0
Q ss_pred Chh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCccc
Q 036338 113 NED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDC 191 (408)
Q Consensus 113 ~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~ 191 (408)
++. +..+++.|..++.--..+...+. .+++.|+..|. .++...|..+|.+++. .-...+... -...
T Consensus 519 ~~~vr~~a~~~l~~~~~~l~~~~~~l~---~vl~~l~~~l~----~~v~~~A~~al~~l~~--~~~~~l~p~----~~~l 585 (971)
T 2x1g_F 519 NVKLLGTALETMGSYCNWLMENPAYIP---PAINLLVRGLN----SSMSAQATLGLKELCR--DCQLQLKPY----ADPL 585 (971)
T ss_dssp CHHHHHHHHHHHHHTHHHHC----CHH---HHHHHHHHHHH----SSCHHHHHHHHHHHHH--HCHHHHHHH----HHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhcCHHHHH---HHHHHHHHHhC----hHHHHHHHHHHHHHHH--HHHHhcccc----HHHH
Confidence 444 77788888877643222222222 45677777773 2355899999999985 222211111 1356
Q ss_pred HHHHHHHHhcC-CChHHHHHHHHHHHHhhcCc--chhhHHhhhcChHHHHHHhcc----cCC-CHHHHHHHHHHHHHhcc
Q 036338 192 LNSLLLVLKQQ-ESVDSRIESLRLLEFIAGDA--DSKVKIAERDGLLAETVKSLS----LDS-DRRLIEASLSCLITISS 263 (408)
Q Consensus 192 i~~Lv~lL~~~-~~~~~~~~Aa~~L~~La~~~--~~~~~i~~~~g~i~~Lv~lL~----~~~-~~~~~~~A~~aL~~Ls~ 263 (408)
+..|..++.++ .+.+.+..+..++..++..- +.+..... ..+++++..+. ... +.+.+.....+|..|+.
T Consensus 586 l~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~--~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 663 (971)
T 2x1g_F 586 LNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLD--IIVSPCFEELQAICQADSKTPAARIRTIFRLNMIST 663 (971)
T ss_dssp HHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHH--HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHH--HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 77777888774 15688888899999887532 33333332 35666666554 221 33344555555555532
Q ss_pred Ccc--------hH--------HHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 264 SKR--------AK--------TKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 264 ~~~--------n~--------~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
.-. +. -.-.....++.+..++... ..+..+.+.++.++..++.
T Consensus 664 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~-------------------~~~~~v~e~~~~~~~~~~~ 722 (971)
T 2x1g_F 664 LFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMW-------------------VEEIDVLEAACSAMKHAIT 722 (971)
T ss_dssp HHHHHTC-------------CCHHHHHTTHHHHHHHHHHT-------------------TTCHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhc-------------------cccHHHHHHHHHHHHHHHH
Confidence 100 00 0111345777777777642 2366899999999999865
No 198
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=68.36 E-value=1.3 Score=39.98 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=21.8
Q ss_pred HHHHHHHhcCcHHHHHHHHhhcCCHHHHHHHHHH
Q 036338 350 TAQEAVSSSNVLTKILLLMQSNCTPAVRQMSADL 383 (408)
Q Consensus 350 ~~~~~~~~~g~~~~Ll~ll~~~~~~~~k~~A~~l 383 (408)
.+++.+++.-+.+. +..| .+....+|+.|..-
T Consensus 209 ~VR~~aa~~l~~~~-L~~L-~D~~~~VR~aa~~~ 240 (244)
T 1lrv_A 209 TVRLAAVEHASLEA-LREL-DEPDPEVRLAIAGR 240 (244)
T ss_dssp HHHHHHHHHSCHHH-HHHC-CCCCHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHH-HHHc-cCCCHHHHHHHHHH
Confidence 67777776655544 4556 77788888888543
No 199
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=67.97 E-value=0.39 Score=35.23 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=24.3
Q ss_pred ccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338 14 FRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
..||.|+..|.- .-++.+|..|=..+-. ...||.|++++.
T Consensus 3 ~~CP~C~~~l~~----~~~~~~C~~C~~~~~~--~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALER----NGDTAHCETCAKDFSL--QALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCEE----CSSEEECTTTCCEEEE--EEECSSSCSCCC
T ss_pred CCCCCCCCcccc----CCCceECccccccCCC--cccCcchhhHHH
Confidence 579999987642 2344557777222211 136999998763
No 200
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=67.77 E-value=3.1 Score=32.92 Aligned_cols=48 Identities=6% Similarity=0.095 Sum_probs=37.9
Q ss_pred CCcccccCccccCCC-ceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCC
Q 036338 11 PSFFRCPISLDVMKS-PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSK 61 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~d-Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~ 61 (408)
++-|.|..|+..+.+ +....-|.-||+.|-.+.+ ...|+.|++++...
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH---AVVCQGCHNAIDPE 76 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS---CCBCTTTCSBCCTT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc---CccCcccCCcCCcC
Confidence 355999999999987 5667799999999976544 35799999988753
No 201
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=66.28 E-value=20 Score=34.31 Aligned_cols=138 Identities=16% Similarity=0.181 Sum_probs=90.0
Q ss_pred cccHHHHHHHHhc----C------CChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHH
Q 036338 189 QDCLNSLLLVLKQ----Q------ESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCL 258 (408)
Q Consensus 189 ~g~i~~Lv~lL~~----~------~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL 258 (408)
.+++..|+.+|.. + .+...+.....+|..+..+..+...+......|..|+..|.+. .+.++..|+..|
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~-~~~~~~~aleLL 186 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLL 186 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTT-SHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCC-chHHHHHHHHHH
Confidence 4567888888752 1 0235566788889888877777777777688999999999886 899999999999
Q ss_pred HHhccCcc--h-HHHHHh----------cCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 259 ITISSSKR--A-KTKLIN----------HKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 259 ~~Ls~~~~--n-~~~~~~----------~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
..+|..++ + ...+.+ ..-..+++..|.+ ..+...+..++..+..+..
T Consensus 187 ~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~--------------------~~~~e~~~~~m~lIN~li~ 246 (383)
T 3eg5_B 187 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS--------------------GTSIALKVGCLQLINALIT 246 (383)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST--------------------TSCHHHHHHHHHHHHHHHT
T ss_pred HHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc--------------------cCcHHHHHHHHHHHHHHHc
Confidence 99988653 3 333322 2446677777754 1255666666666666654
Q ss_pred C---HHHHHHHHhh--cCchHHHHHHH
Q 036338 326 T---KQGRMEICQD--AALLNGVVQKM 347 (408)
Q Consensus 326 ~---~~~~~~~~~~--~g~i~~lv~~l 347 (408)
+ -+-|..+..+ .-|+..+++.|
T Consensus 247 ~~~dl~~R~~lR~ef~~~Gl~~il~~l 273 (383)
T 3eg5_B 247 PAEELDFRVHIRSELMRLGLHQVLQEL 273 (383)
T ss_dssp TCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence 3 3344444321 13455455543
No 202
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=65.87 E-value=56 Score=30.99 Aligned_cols=112 Identities=13% Similarity=0.046 Sum_probs=82.2
Q ss_pred HHHhhcCcc-hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCC
Q 036338 215 LEFIAGDAD-SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGS 293 (408)
Q Consensus 215 L~~La~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~ 293 (408)
|.+|-.++. .-.-++. .+++..+..++.-+ +.++.++....|...|....-...= -...+|.++..+.-
T Consensus 266 LL~LLmHdSnAIDGFVk-~DGv~~I~TvinYp-N~~l~RaG~KLLLQVSDaksL~~t~-L~e~LPFi~~~i~~------- 335 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVR-SDGVGAITTVVQYP-NNDLIRAGCKLLLQVSDAKALAKTP-LENILPFLLRLIEI------- 335 (619)
T ss_dssp HHHHHCCSHHHHHHHHH-TTHHHHHHHHTTSS-CHHHHHHHHHHHHHHTTCGGGGTSC-CTTHHHHHHHHHHH-------
T ss_pred HHHHHhcccccccceee-cccceeEEEEeecC-CcHHHHhhhheeeeecchHHHhhcc-ccccchHHHHHhcc-------
Confidence 445555554 3444445 67889999999887 8899999999999988765421110 13567889998875
Q ss_pred CCCCCCCCCCCCCCCCcchHHHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHHHHH
Q 036338 294 GNGNGNGNGNGSGNGTVLITEKALRLVEILSTTKQGRMEICQDAALLNGVVQKMLK 349 (408)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~l~~ 349 (408)
+++.+++-...+.|.|...+...-+.++...|+|+.|-..+.+
T Consensus 336 -------------h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k 378 (619)
T 3c2g_A 336 -------------HPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK 378 (619)
T ss_dssp -------------CCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred -------------CCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence 4588999999999999998877666666555899988877666
No 203
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=65.58 E-value=2.3 Score=32.15 Aligned_cols=12 Identities=17% Similarity=0.661 Sum_probs=10.9
Q ss_pred ccHhhHHHHHhc
Q 036338 35 YDRASIQRWLDS 46 (408)
Q Consensus 35 f~r~cI~~~~~~ 46 (408)
|||.|+.+|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 204
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=65.47 E-value=26 Score=29.14 Aligned_cols=71 Identities=11% Similarity=0.060 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhC-hhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHh
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKES-DENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLI 170 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~-~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L 170 (408)
.+.++.|.+.|++.++. +..|+..|-.+.+.. ......|.+. ..+..|+.++....+.++.+.++..+..-
T Consensus 51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~-~Fl~el~~l~~~~~~~~Vk~kil~li~~W 123 (163)
T 1x5b_A 51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSR-DFATEVRAVIKNKAHPKVCEKLKSLMVEW 123 (163)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhH-HHHHHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 67889999999998887 899999999998874 5566677776 88888999997534455667777766554
No 205
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=65.45 E-value=43 Score=33.04 Aligned_cols=133 Identities=15% Similarity=0.090 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH
Q 036338 99 QDEVKDIIRVAISKNEDFSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ 178 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~ 178 (408)
......++...+++...+.-|+.-|....+.-++..+. +|..+++|....+ .++...|+..|..+|. + +.
T Consensus 28 ~~~y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~~------Ai~a~lDLcEDed-~~IR~qaik~Lp~~ck--~-~~ 97 (507)
T 3u0r_A 28 KDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADS------AINAQLDLCEDED-VSIRRQAIKELPQFAT--G-EN 97 (507)
T ss_dssp HHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHHH------HHHHHHHHHTCSS-HHHHHHHHHHGGGGCC--T-TC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHH------HHHHHHHHHhccc-HHHHHHHHHhhHHHhh--h-hh
Confidence 45566666655554333777888888888887776544 4555888888776 3344889999998887 3 22
Q ss_pred HHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHH
Q 036338 179 HLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCL 258 (408)
Q Consensus 179 ~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL 258 (408)
+. .+...|+.+|... +.......-..|..|-..+. .+.+..|..-+..+ +..+++..+..|
T Consensus 98 -i~--------kiaDvL~QlLqtd-d~~E~~~V~~sL~sllk~Dp--------k~tl~~lf~~i~~~-~e~~Rer~lkFi 158 (507)
T 3u0r_A 98 -LP--------RVADILTQLLQTD-DSAEFNLVNNALLSIFKMDA--------KGTLGGLFSQILQG-EDIVRERAIKFL 158 (507)
T ss_dssp -HH--------HHHHHHHHHTTCC-CHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred -hh--------hHHHHHHHHHhcc-chHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHccc-chHHHHHHHHHH
Confidence 11 3356688888877 66666666666665543321 23344455544445 667787777777
Q ss_pred HH
Q 036338 259 IT 260 (408)
Q Consensus 259 ~~ 260 (408)
..
T Consensus 159 ~~ 160 (507)
T 3u0r_A 159 ST 160 (507)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 206
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=65.07 E-value=2.4 Score=32.00 Aligned_cols=12 Identities=25% Similarity=0.753 Sum_probs=10.9
Q ss_pred ccHhhHHHHHhc
Q 036338 35 YDRASIQRWLDS 46 (408)
Q Consensus 35 f~r~cI~~~~~~ 46 (408)
|||.|+.+|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 207
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=64.81 E-value=11 Score=33.19 Aligned_cols=71 Identities=11% Similarity=0.145 Sum_probs=57.4
Q ss_pred cHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc--hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338 191 CLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD--SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS 263 (408)
Q Consensus 191 ~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~ 263 (408)
++..|.+.|.++ ++.++..|..+|..+..+.. ....|+. ..++..|+++++...+..+++..+..|...+.
T Consensus 46 a~ral~krl~~~-n~~v~l~aL~LLe~~vkNcG~~f~~eias-~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 46 AVNSIKKKVNDK-NPHVALYALEVMESVVKNCGQTVHDEVAN-KQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCHHHHHHHSS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcchHHHHhhcc-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 456677888888 99999999999999988754 4556665 67889999999866678999999999887764
No 208
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=62.85 E-value=1.9 Score=38.75 Aligned_cols=12 Identities=17% Similarity=0.102 Sum_probs=7.9
Q ss_pred HHHHHHHHHhcC
Q 036338 70 QRLIQIWSDSVQ 81 (408)
Q Consensus 70 ~~~I~~~~~~~~ 81 (408)
.+.|..++..++
T Consensus 41 ~~ri~~~~~~~p 52 (244)
T 1lrv_A 41 GRQIDRFFRNNP 52 (244)
T ss_dssp HHHHHHHHHHCG
T ss_pred HHHHHHHHcCCH
Confidence 455777777654
No 209
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=61.90 E-value=25 Score=30.85 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhC-hhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKES-DENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLIL 171 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~-~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~ 171 (408)
.+.++.|.+.|++.++. +..|+..|..+++.. ......|... ..+..|+.+++...+.++.+.++..+...+
T Consensus 44 k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~-~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 44 KYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANK-QTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 67899999999998887 999999998888763 3456677777 888889888876445556688877776654
No 210
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=61.90 E-value=18 Score=30.33 Aligned_cols=88 Identities=13% Similarity=0.154 Sum_probs=64.1
Q ss_pred cHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc--hhhHHhhhcChHHHHHHhccc-----CCCHHHHHHHHHHHHHhcc
Q 036338 191 CLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD--SKVKIAERDGLLAETVKSLSL-----DSDRRLIEASLSCLITISS 263 (408)
Q Consensus 191 ~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~--~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~~A~~aL~~Ls~ 263 (408)
++..|.+.|.++ +..++..|..+|..+..+.. ....|+. ..++..|++++.. ..+..+++.++..|..-+.
T Consensus 51 A~ral~krl~~~-n~~vql~AL~LLd~~vkNCG~~Fh~evas-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSP-QEWEALQALTVLEACMKNCGRRFHNEVGK-FRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHTS-HHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhh-HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 356677888888 99999999999999988753 4555665 7899999999963 2367999999999887765
Q ss_pred CcchHHHHHhcCcHHHHHHHhcc
Q 036338 264 SKRAKTKLINHKLITELGKLITD 286 (408)
Q Consensus 264 ~~~n~~~~~~~G~i~~Lv~lL~~ 286 (408)
.-.+-.. |..+...|..
T Consensus 129 ~f~~~~~------i~~~y~~Lk~ 145 (171)
T 1juq_A 129 ALPEEAK------IKDAYHMLKR 145 (171)
T ss_dssp HCTTCHH------HHHHHHHHHH
T ss_pred HcCCCcH------HHHHHHHHHH
Confidence 3322111 4455666654
No 211
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=61.68 E-value=16 Score=29.85 Aligned_cols=89 Identities=15% Similarity=0.127 Sum_probs=65.0
Q ss_pred ccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc--hhhHHhhhcChHHHHHHhccc-----CCCHHHHHHHHHHHHHhc
Q 036338 190 DCLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD--SKVKIAERDGLLAETVKSLSL-----DSDRRLIEASLSCLITIS 262 (408)
Q Consensus 190 g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~--~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~~A~~aL~~Ls 262 (408)
.++..|.+.|.++ ++.++..|..+|..+..+.. ....|+. ..++..|++++.. ..+..+++..+..|..-+
T Consensus 38 ~a~rai~krl~~~-n~~vql~AL~LLe~~vkNCG~~fh~evas-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 38 HAPWLLAHKIQSP-QEKEALYALTVLEMCMNHCGEKFHSEVAK-FRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHTS-HHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHhh-HHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 3466778888888 99999999999999988754 4556665 7899999999974 137799999999888776
Q ss_pred cCcchHHHHHhcCcHHHHHHHhcc
Q 036338 263 SSKRAKTKLINHKLITELGKLITD 286 (408)
Q Consensus 263 ~~~~n~~~~~~~G~i~~Lv~lL~~ 286 (408)
..-.+... |..+...|..
T Consensus 116 ~~f~~~p~------i~~~y~~Lk~ 133 (148)
T 1mhq_A 116 VWFPEDIK------IRDAYQMLKK 133 (148)
T ss_dssp HHCTTCHH------HHHHHHHHHH
T ss_pred HHcCCCch------HHHHHHHHHH
Confidence 53322222 4555666654
No 212
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=61.64 E-value=19 Score=29.05 Aligned_cols=70 Identities=13% Similarity=0.289 Sum_probs=55.0
Q ss_pred cHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcch--hhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338 191 CLNSLLLVLKQQESVDSRIESLRLLEFIAGDADS--KVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS 263 (408)
Q Consensus 191 ~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~--~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~ 263 (408)
++..|.+.|.++ ++.++..|..+|..+..+... ...|+. ..++..|+++++.. ++.+++..+..+...+.
T Consensus 43 a~rai~Krl~~~-n~~~ql~AL~LLe~~vkNcG~~f~~evas-~~Fl~el~~l~~~~-~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHK-DPHVAMQALTLLGACVSNCGKIFHLEVCS-RDFASEVSNVLNKG-HPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSCHHHHHHHSS-HHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-ChHHHHHHHHHHHHHHHhcCHHHHHHHhh-HHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 356677788888 999999999999988877643 445554 67899999999764 88999999998887654
No 213
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=61.51 E-value=22 Score=29.11 Aligned_cols=72 Identities=15% Similarity=0.140 Sum_probs=56.8
Q ss_pred cHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc--hhhHHhhhcChHHHHHHhccc-----CCCHHHHHHHHHHHHHhcc
Q 036338 191 CLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD--SKVKIAERDGLLAETVKSLSL-----DSDRRLIEASLSCLITISS 263 (408)
Q Consensus 191 ~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~--~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~~A~~aL~~Ls~ 263 (408)
++..|.+.|.++ ++.++..|..+|..+..+.. ....|+. ..++..|++++.. ..+..+++..+..|...+.
T Consensus 49 a~ral~krl~~~-n~~v~l~AL~LLe~cvkNCG~~fh~eias-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSP-QEWEAIQALTVLETCMKSCGKRFHDEVGK-FRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCCHHHHHHHTS-HHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHhcCHHHHHHHhh-HHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 356677888888 99999999999999988764 3455665 7799999999964 2478899999999887765
Q ss_pred C
Q 036338 264 S 264 (408)
Q Consensus 264 ~ 264 (408)
.
T Consensus 127 ~ 127 (149)
T 3g2s_A 127 G 127 (149)
T ss_dssp H
T ss_pred H
Confidence 3
No 214
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=61.09 E-value=1.8e+02 Score=31.38 Aligned_cols=143 Identities=11% Similarity=0.063 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhccc----
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNK---- 173 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~---- 173 (408)
...+..+++.+.+++.+ |.+|-..|..+-+ ++ ++...+..+|.++.+..++..|+..|.+....
T Consensus 15 ~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~p----------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~ 83 (1049)
T 3m1i_C 15 IALLDQVVSTFYQGSGVQQKQAQEILTKFQD-NP----------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKL 83 (1049)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-ST----------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHh-Cc----------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCcc
Confidence 67777788777777666 6667777766533 22 55666777776544444447777777775421
Q ss_pred ccchHHHHHHHhccCcccHHHHHHHHhcCC----ChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHH
Q 036338 174 IEDQQHLMNLILKRDQDCLNSLLLVLKQQE----SVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRR 249 (408)
Q Consensus 174 ~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~----~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~ 249 (408)
++++. +..| +...+..+...-.... +..+|...+.+|..++..+-. . .=.+.++.|+..++ . +..
T Consensus 84 l~~~~--~~~i---r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p-~---~Wp~ll~~L~~~~~-~-~~~ 152 (1049)
T 3m1i_C 84 LPNDH--RIGI---RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWP-Q---NWPEFIPELIGSSS-S-SVN 152 (1049)
T ss_dssp SCHHH--HHHH---HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTT-T---TCTTHHHHHHHHHT-T-CHH
T ss_pred CCHHH--HHHH---HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCc-c---cchHHHHHHHHHHc-c-ChH
Confidence 12222 4444 2333444433221110 246677888888888765321 1 11468899999997 3 566
Q ss_pred HHHHHHHHHHHhcc
Q 036338 250 LIEASLSCLITISS 263 (408)
Q Consensus 250 ~~~~A~~aL~~Ls~ 263 (408)
.++.++.+|..|+.
T Consensus 153 ~~~~~l~~L~~l~e 166 (1049)
T 3m1i_C 153 VCENNMIVLKLLSE 166 (1049)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888888863
No 215
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=60.12 E-value=92 Score=27.56 Aligned_cols=140 Identities=11% Similarity=0.062 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhcCChh--HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccc
Q 036338 99 QDEVKDIIRVAISKNED--FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIED 176 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~--~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~ 176 (408)
.+.+..+...|...+.+ |.-|+..|..+ .. .. ..++.+...+.....=++.+.+..++..++. ..
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~---------~~-~~L~~ir~~va~D~~WrVre~lA~a~~~~~~--~~ 135 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SK---------DK-EILIFMRDEVSKDNNWRVQEVLAKAFDEFCK--KI 135 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TT---------SH-HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-cC---------cH-HHHHHHHHHhCCCCCccHHHHHHHHHHHHHH--hc
Confidence 45566677767666544 77777766555 21 11 3444455433333322333777777766542 00
Q ss_pred hHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHH
Q 036338 177 QQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLS 256 (408)
Q Consensus 177 ~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~ 256 (408)
. -...++.+...+.+. +..+|..|...+.--+..+..+ .. ...+-+++.-|.++.+.-++++.++
T Consensus 136 ~----------pe~~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~~~~k---~d-p~~ll~iL~~L~~D~s~yVrKSVan 200 (240)
T 3l9t_A 136 E----------YKKALPIIDEWLKSS-NLHTRRAATEGLRIWTNRPYFK---EN-PNEAIRRIADLKEDVSEYVRKSVGN 200 (240)
T ss_dssp C----------TTTTHHHHHHHHHCS-SHHHHHHHHHHTCSGGGSTTTT---TC-HHHHHHHHHTTTTCSCHHHHHHHHH
T ss_pred C----------HHHHHHHHHHHhcCC-CHHHHHHHHHhhHHHhccchhh---cC-HHHHHHHHHHhcCChHHHHHHHHHH
Confidence 0 112467778888888 9999998887765433322111 11 2223444444444448889999999
Q ss_pred HHHHhccCcc
Q 036338 257 CLITISSSKR 266 (408)
Q Consensus 257 aL~~Ls~~~~ 266 (408)
+|..++..+.
T Consensus 201 ~LrD~SK~~P 210 (240)
T 3l9t_A 201 ALRDISKKFP 210 (240)
T ss_dssp HHHHHHTTCH
T ss_pred HHHHHhhhCH
Confidence 9999999654
No 216
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=59.47 E-value=1.8e+02 Score=31.73 Aligned_cols=129 Identities=12% Similarity=0.112 Sum_probs=82.2
Q ss_pred HHHHHHHhcCChh-HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcC-----c-chhhHHHHHHHHHHhccccc
Q 036338 103 KDIIRVAISKNED-FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNV-----N-DVNMLKQVIRVLDLILNKIE 175 (408)
Q Consensus 103 ~~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~-----~-~~~~~e~A~~~L~~L~~~~~ 175 (408)
..+.+.+...+.+ +.-++++|.++... ..++.|..++... + ..++...|+.+|..++. .
T Consensus 443 ~~l~~~~~~~~~~~~~~~LkaLGN~g~p------------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~--~ 508 (1056)
T 1lsh_A 443 DLLSQSSDRAKEEEIVLALKALGNAGQP------------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAK--R 508 (1056)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTCG------------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGG--T
T ss_pred HHHHHHHhcCChHHHHHHHHHhhccCCh------------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhh--h
Confidence 3444555666655 77788888887542 5577777777531 1 33455778999988874 2
Q ss_pred chHHHHHHHhccCcccHHHHHHHHhc-CCChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHH
Q 036338 176 DQQHLMNLILKRDQDCLNSLLLVLKQ-QESVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEAS 254 (408)
Q Consensus 176 ~~~~~~~~i~~~~~g~i~~Lv~lL~~-~~~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A 254 (408)
....++ +.|..+..+ ..+.++|..|..+|..- +++ ...+..++..+..+.+.++....
T Consensus 509 ~p~~v~-----------~il~~i~~n~~e~~EvRiaA~~~Lm~t--~P~--------~~~l~~ia~~l~~E~~~QV~sfv 567 (1056)
T 1lsh_A 509 DPRKVQ-----------EIVLPIFLNVAIKSELRIRSCIVFFES--KPS--------VALVSMVAVRLRREPNLQVASFV 567 (1056)
T ss_dssp CHHHHH-----------HHHHHHHHCTTSCHHHHHHHHHHHHHT--CCC--------HHHHHHHHHHHTTCSCHHHHHHH
T ss_pred chHHHH-----------HHHHHHhcCCCCChHHHHHHHHHHHHH--CcC--------HHHHHHHHHHHhhCchHHHHHHH
Confidence 222212 234555532 23788888888777542 232 23456677777776688999999
Q ss_pred HHHHHHhccCcc
Q 036338 255 LSCLITISSSKR 266 (408)
Q Consensus 255 ~~aL~~Ls~~~~ 266 (408)
...|.+++....
T Consensus 568 ~S~l~sla~s~~ 579 (1056)
T 1lsh_A 568 YSQMRSLSRSSN 579 (1056)
T ss_dssp HHHHHHHTTCCS
T ss_pred HHHHHHHHhcCC
Confidence 999999988654
No 217
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=58.52 E-value=18 Score=31.62 Aligned_cols=71 Identities=13% Similarity=0.050 Sum_probs=55.6
Q ss_pred cHHHHHHHHhcCCChHHHHHHHHHHHHhhcCcc--hhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhcc
Q 036338 191 CLNSLLLVLKQQESVDSRIESLRLLEFIAGDAD--SKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISS 263 (408)
Q Consensus 191 ~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~ 263 (408)
++..|.+.|.++ ++.++..|..+|..+..+.. ....|+. ..++..|++++.+..+..+++.++..+..-+.
T Consensus 43 a~r~l~krl~~~-n~~~~l~aL~Lle~~vkNcG~~f~~eva~-~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSP-NPHSSCYSLLVLESIVKNCGAPVHEEVFT-KENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHSHHHHHHHHSS-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHHHHhccCHHHHHHHHh-HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 355677778888 99999999999999988754 4456665 66999999999866578899888888776653
No 218
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=57.93 E-value=7.1 Score=30.91 Aligned_cols=49 Identities=10% Similarity=0.187 Sum_probs=38.5
Q ss_pred CCcccccCccccCC---CceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 11 PSFFRCPISLDVMK---SPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~---dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
++-|.|..|...+. .+....-|.-||+.|-.+-+.. ...|+.|++++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~-~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ-DGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC-CEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC-ccChhhcCCccCc
Confidence 45699999999996 3677789999999998776542 2269999988765
No 219
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=57.49 E-value=31 Score=32.99 Aligned_cols=138 Identities=17% Similarity=0.196 Sum_probs=87.1
Q ss_pred cccHHHHHHHHhc----CC------ChHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHH
Q 036338 189 QDCLNSLLLVLKQ----QE------SVDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCL 258 (408)
Q Consensus 189 ~g~i~~Lv~lL~~----~~------~~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL 258 (408)
.+++..|+..|.. +. +.........+|..+..+..+...+.....++..|+..|... ++.++..++..|
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~-~~~~r~~vleLL 124 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA-VPNMMIDAAKLL 124 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTT-SHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCC-CchHHHHHHHHH
Confidence 3566667766642 10 234456788888888877777777776688999999999876 889999999999
Q ss_pred HHhccCcc--h-HHHHH----------hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 259 ITISSSKR--A-KTKLI----------NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 259 ~~Ls~~~~--n-~~~~~----------~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
..+|..+. . ...+. +..-+.+||+.|.+ +.+...+..++..+..|..
T Consensus 125 ~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~--------------------~~~~e~~~a~m~lIN~lv~ 184 (386)
T 2bnx_A 125 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS--------------------GTSIALKVGCLQLINALIT 184 (386)
T ss_dssp HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST--------------------TSCHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc--------------------CChHHHHHHHHHHHHHHHC
Confidence 88888654 2 22222 22345567777753 2355666666666666655
Q ss_pred C---HHHHHHHHhh--cCchHHHHHHH
Q 036338 326 T---KQGRMEICQD--AALLNGVVQKM 347 (408)
Q Consensus 326 ~---~~~~~~~~~~--~g~i~~lv~~l 347 (408)
+ -+-|..+..+ ..|+..+++.|
T Consensus 185 ~~~dl~~R~~LR~Ef~~~GL~~il~~L 211 (386)
T 2bnx_A 185 PAEELDFRVHIRSELMRLGLHQVLQEL 211 (386)
T ss_dssp TCSCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence 3 3333333321 13455555544
No 220
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=56.12 E-value=1.3e+02 Score=28.07 Aligned_cols=190 Identities=10% Similarity=0.088 Sum_probs=119.0
Q ss_pred HHHHHHhcCChh-HHHHHHHHHHHhhhChh----hhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchH
Q 036338 104 DIIRVAISKNED-FSENLTKIVAFAKESDE----NKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQ 178 (408)
Q Consensus 104 ~Lv~~L~s~~~~-~~~Al~~L~~la~~~~~----~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~ 178 (408)
.|+..|..=+-+ |..+......+...... ..+.+...+.++..|+.--.. ....-.+=..|..+.. ++.
T Consensus 82 ~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~---~diAl~~G~mLRecir--~e~- 155 (341)
T 1upk_A 82 TLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYES---PEIALNCGIMLRECIR--HEP- 155 (341)
T ss_dssp HHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGS---TTTHHHHHHHHHHHHT--SHH-
T ss_pred HHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhcc---chhHhHHHHHHHHHHH--hHH-
Confidence 344444443445 66666666666554332 222344332333333322222 2222334445666654 332
Q ss_pred HHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC-cchh-hHHhh-hcChHHHHHHhcccCCCHHHHHHHH
Q 036338 179 HLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD-ADSK-VKIAE-RDGLLAETVKSLSLDSDRRLIEASL 255 (408)
Q Consensus 179 ~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~-~~~~-~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~A~ 255 (408)
+.+.|. ..+.+..+.+.++.+ +-++-..|...+..|-.. .... +.+.. -.-++....++|.++ +--.++.++
T Consensus 156 -la~~iL--~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkRQSl 230 (341)
T 1upk_A 156 -LAKIIL--WSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQSL 230 (341)
T ss_dssp -HHHHHH--HSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHHHH
T ss_pred -HHHHHh--ccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHHHHH
Confidence 244555 677888999999988 999999999999977443 2222 22221 123677788899887 889999999
Q ss_pred HHHHHhccCcchHHHHH----hcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 256 SCLITISSSKRAKTKLI----NHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 256 ~aL~~Ls~~~~n~~~~~----~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
..|..|-....|..-|. +..-+..+..||+++ +..++-.|--+..-...
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~---------------------sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK---------------------SRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS---------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc---------------------hhchhhhhhhheeeeee
Confidence 99999998888766665 356677788888864 78888888888876543
No 221
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=54.85 E-value=3.8 Score=26.51 Aligned_cols=13 Identities=23% Similarity=0.559 Sum_probs=11.3
Q ss_pred CCCCcccccCccc
Q 036338 9 TVPSFFRCPISLD 21 (408)
Q Consensus 9 ~~~~~~~Cpi~~~ 21 (408)
++|+++.||+|+.
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 6899999999985
No 222
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=54.16 E-value=36 Score=29.59 Aligned_cols=71 Identities=11% Similarity=0.084 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhC-hhhhhhhhhcCChHHHHHHHhhcCcchhhHHHHHHHHHHh
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKES-DENKTFLAKFDGLVVMLVEILSNVNDVNMLKQVIRVLDLI 170 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~-~~~r~~i~~~~G~i~~Lv~lL~s~~~~~~~e~A~~~L~~L 170 (408)
.+.++.|.+.|++.++. +..|+..|-.+++.. ......|.+. ..+..|+.++.+..+.++.+.++..+...
T Consensus 41 k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~-~fl~~l~~l~~~~~~~~Vk~kil~li~~W 113 (220)
T 1dvp_A 41 KNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTK-ENCEMFSSFLESTPHENVRQKMLELVQTW 113 (220)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 67889999999998887 999999999998875 3466677777 78888999887644445557777666544
No 223
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=54.13 E-value=12 Score=31.21 Aligned_cols=48 Identities=8% Similarity=0.129 Sum_probs=36.3
Q ss_pred CCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCC
Q 036338 11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSK 61 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~ 61 (408)
++-|.|..|...|.+--...-|.-||+.|-.+-+. ..|..|++++...
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~---~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG---TKCAACQLGIPPT 78 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS---CBCTTTCCBCCTT
T ss_pred cccCccCCCCCcCCCCCcccCCeeeeccccccccc---ccccccccccCCC
Confidence 45699999999998755567899999999776554 3588887766543
No 224
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=53.34 E-value=11 Score=28.25 Aligned_cols=47 Identities=13% Similarity=0.270 Sum_probs=34.6
Q ss_pred CCcccccCccccCCCc-eecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 11 PSFFRCPISLDVMKSP-VSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dP-v~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
++-|.|..|...+.+. ....-|..||+.|-.+ .-...|..|++++.+
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~---~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTR---EDSPKCKGCFKAIVA 78 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTT---CCCCBCSSSCCBCCS
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHhhh---hcCCccccCCCcccc
Confidence 3458899999998764 4556899999888543 234579999988764
No 225
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=53.27 E-value=9.2 Score=32.34 Aligned_cols=47 Identities=9% Similarity=0.131 Sum_probs=30.4
Q ss_pred CcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCC
Q 036338 12 SFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSK 61 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~ 61 (408)
+-|.|..|...|.+--...-|.-||+.|-.+-+ ...|..|++++...
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f---~~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF---GTKCAACQLGIPPT 132 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHTT---SCCCTTTCCCCCSS
T ss_pred ccCccCCCCCccCCCceeECCEeeecCcccccc---ccccccCCCccCCC
Confidence 447777777777664344577778877754433 34688888776543
No 226
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=52.77 E-value=46 Score=27.07 Aligned_cols=72 Identities=18% Similarity=0.106 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhcCChh-HHHHHHHHHHHhhhC-hhhhhhhhhcCChHHHHHHHhhcC-----cchhhHHHHHHHHHHhc
Q 036338 99 QDEVKDIIRVAISKNED-FSENLTKIVAFAKES-DENKTFLAKFDGLVVMLVEILSNV-----NDVNMLKQVIRVLDLIL 171 (408)
Q Consensus 99 ~~~i~~Lv~~L~s~~~~-~~~Al~~L~~la~~~-~~~r~~i~~~~G~i~~Lv~lL~s~-----~~~~~~e~A~~~L~~L~ 171 (408)
.+.++.|.+.|++.++. +..|+..|-.+++.. ......|.+. ..+.-|+.++... .+.++.+.++..+..-+
T Consensus 37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~-~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 115 (148)
T 1mhq_A 37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKF-RFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSH-HHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH-HHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence 67889999999998887 999999999998874 5567778877 8999999988742 13455577777665543
No 227
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=51.76 E-value=6 Score=26.28 Aligned_cols=14 Identities=21% Similarity=0.555 Sum_probs=11.7
Q ss_pred CCCCCcccccCccc
Q 036338 8 ITVPSFFRCPISLD 21 (408)
Q Consensus 8 ~~~~~~~~Cpi~~~ 21 (408)
.++|+++.||+|+.
T Consensus 31 ~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 31 EDLPDDWACPVCGA 44 (52)
T ss_dssp TSSCTTCCCSSSCC
T ss_pred HHCCCCCcCCCCCC
Confidence 46899999999986
No 228
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=50.83 E-value=1.6e+02 Score=27.49 Aligned_cols=142 Identities=8% Similarity=0.048 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHhhhChhhhhhhhhcCChHHHHHHHhhcCc-chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHH
Q 036338 116 FSENLTKIVAFAKESDENKTFLAKFDGLVVMLVEILSNVN-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNS 194 (408)
Q Consensus 116 ~~~Al~~L~~la~~~~~~r~~i~~~~G~i~~Lv~lL~s~~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~ 194 (408)
...+=..|+...+ ++...+.|... +.+-.+...+..+. ++. ..|..++..|... |..- +...+...-.-.+..
T Consensus 140 Al~~G~mLRecir-~e~la~~iL~~-~~f~~fF~yv~~~~Fdia--sDAf~TfkelLt~-Hk~l-vaefL~~nyd~Ff~~ 213 (341)
T 1upk_A 140 ALNCGIMLRECIR-HEPLAKIILWS-EQFYDFFRYVEMSTFDIA--SDAFATFKDLLTR-HKLL-SAEFLEQHYDRFFSE 213 (341)
T ss_dssp HHHHHHHHHHHHT-SHHHHHHHHHS-GGGGHHHHHTTCSSHHHH--HHHHHHHHHHHHS-SHHH-HHHHHHHTHHHHHHH
T ss_pred HhHHHHHHHHHHH-hHHHHHHHhcc-HHHHHHHHHhcCCCchHH--HHHHHHHHHHHhc-cHHH-HHHHHHHhHHHHHHH
Confidence 4444445666555 56666667766 66777777777766 544 6677776665431 2211 122332111244667
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhhcCcchhhHHh---hhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCc
Q 036338 195 LLLVLKQQESVDSRIESLRLLEFIAGDADSKVKIA---ERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSK 265 (408)
Q Consensus 195 Lv~lL~~~~~~~~~~~Aa~~L~~La~~~~~~~~i~---~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~ 265 (408)
.-.||.++ +.-+|..+..+|+.|-.+..|...+. .+..-+..++.+|++. +...+-.|...+--...++
T Consensus 214 y~~Ll~S~-NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 214 YEKLLHSE-NYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHTTCS-SHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCS
T ss_pred HHHHhcCC-cchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCC
Confidence 77888999 99999999999999998887776664 3456788999999997 8888888888877665544
No 229
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=50.70 E-value=89 Score=24.98 Aligned_cols=71 Identities=8% Similarity=0.039 Sum_probs=45.8
Q ss_pred HHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhc
Q 036338 144 VVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAG 220 (408)
Q Consensus 144 i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~ 220 (408)
+..|.+-|.+.. ..++..|+.+|-.+.. +....++..|. +...+..|++++... +..++.....+|...+.
T Consensus 44 ~rai~Krl~~~n-~~~ql~AL~LLe~~vk--NcG~~f~~eva--s~~Fl~el~~l~~~~-~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 44 LRSIMRRVNHKD-PHVAMQALTLLGACVS--NCGKIFHLEVC--SRDFASEVSNVLNKG-HPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHTCSS-HHHHHHHHHHHHHHHH--HSCHHHHHHHS--SHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-hHHHHHHHHHHHHHHH--hcCHHHHHHHh--hHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence 333455555443 2233566666655554 22233455665 677888888888877 89999999999887764
No 230
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=50.50 E-value=4.5 Score=34.57 Aligned_cols=50 Identities=14% Similarity=0.264 Sum_probs=38.7
Q ss_pred CCcccccCccccCCC---ceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCC
Q 036338 11 PSFFRCPISLDVMKS---PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSK 61 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~d---Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~ 61 (408)
++-|.|..|...|.+ +....-|.-||+.|-.+-+.. ...|+.|++++...
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~-~~~C~~C~~~I~~~ 82 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN-SGACSACGQSIPAS 82 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC-CEECTTTCCEECTT
T ss_pred ccCcccCCCCcccccCCceEEEeCCcccccccccccccc-CCccccCCCccccC
Confidence 355899999999985 777789999999998776542 12599999887643
No 231
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=50.27 E-value=4.4 Score=29.53 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=23.0
Q ss_pred cccccC--ccccCC-----Cceec------CCCCcccHhhHHHH
Q 036338 13 FFRCPI--SLDVMK-----SPVSL------CTGVTYDRASIQRW 43 (408)
Q Consensus 13 ~~~Cpi--~~~~~~-----dPv~~------~cgh~f~r~cI~~~ 43 (408)
-..||- |+..+. .+|+= .||+.||..|-+.|
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAY 68 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEEC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccc
Confidence 567988 887764 24554 48999999998776
No 232
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=50.19 E-value=3.8 Score=22.65 Aligned_cols=11 Identities=27% Similarity=0.863 Sum_probs=8.4
Q ss_pred ccccCccccCC
Q 036338 14 FRCPISLDVMK 24 (408)
Q Consensus 14 ~~Cpi~~~~~~ 24 (408)
..||+|++.|-
T Consensus 7 vqcpvcqq~mp 17 (29)
T 3vhs_A 7 VQCPVCQQMMP 17 (29)
T ss_dssp EECTTTCCEEE
T ss_pred eeChHHHHhCc
Confidence 46899988773
No 233
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=49.77 E-value=5.1 Score=26.89 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=12.3
Q ss_pred CCCCCcccccCcccc
Q 036338 8 ITVPSFFRCPISLDV 22 (408)
Q Consensus 8 ~~~~~~~~Cpi~~~~ 22 (408)
.++|+++.||+|+.-
T Consensus 31 e~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 31 KDIPDDWVCPLCGVG 45 (54)
T ss_dssp GGSCTTCBCTTTCCB
T ss_pred hHCCCCCcCcCCCCc
Confidence 368999999999863
No 234
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=49.04 E-value=1.6e+02 Score=27.06 Aligned_cols=147 Identities=18% Similarity=0.159 Sum_probs=88.1
Q ss_pred HHHHhhcC-c----chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHH--hcCCChHHHHHHHHHHHHhh
Q 036338 147 LVEILSNV-N----DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVL--KQQESVDSRIESLRLLEFIA 219 (408)
Q Consensus 147 Lv~lL~s~-~----~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL--~~~~~~~~~~~Aa~~L~~La 219 (408)
+..+++++ . +....+.|+..|..++ ||.+. --.|. .+. ...|-.++ ... +...++.|+++|...-
T Consensus 27 ~r~ll~sg~~~~~~D~~~le~aLD~L~ElS---HDi~~-G~KI~--~~e-f~lL~nL~~~~~~-~~~~rE~aarII~ssL 98 (315)
T 3qml_C 27 MRNIIDSNPTLSSQDIARLEDSFDRIMEFA---HDYKH-GYKII--THE-FALLANLSLNENL-PLTLRELSTRVITSCL 98 (315)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHGGGT---TSHHH-HHHHH--HHH-HHHHHHHHHCTTS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCcccHHHHHHHHHHHHHhh---hhHHh-hhHHH--hCc-HHHHHHHHhhccC-ChhHHHHHHHHHHHHH
Confidence 45556555 1 3334688888888888 47653 22232 222 33333333 333 6678999999999766
Q ss_pred cC-cchhhHHhh-hcChHHHHHHhccc----C--CCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCC
Q 036338 220 GD-ADSKVKIAE-RDGLLAETVKSLSL----D--SDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGN 291 (408)
Q Consensus 220 ~~-~~~~~~i~~-~~g~i~~Lv~lL~~----~--~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~ 291 (408)
.+ ++....|.. -..++..+..-|.. + .+..+++.-+++|-.|..++. .+ ...++..|+.++...
T Consensus 99 RNNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~---- 170 (315)
T 3qml_C 99 RNNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERN---- 170 (315)
T ss_dssp TTCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHT----
T ss_pred ccCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccC----
Confidence 65 444444432 23455555444432 1 244678888999999988752 11 244668888888642
Q ss_pred CCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHh
Q 036338 292 GSGNGNGNGNGNGSGNGTVLITEKALRLVEILS 324 (408)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~ 324 (408)
..+..++.+++.++..+-
T Consensus 171 ---------------~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 171 ---------------NKDKQLQIKVLELISKIL 188 (315)
T ss_dssp ---------------TTCHHHHHHHHHHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHHc
Confidence 236788888888887765
No 235
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=47.55 E-value=47 Score=24.22 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=12.5
Q ss_pred CCCcccccCccccCCC
Q 036338 10 VPSFFRCPISLDVMKS 25 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~d 25 (408)
-...|.|++|...|..
T Consensus 14 ~~~~~~C~~C~~~f~~ 29 (106)
T 2ee8_A 14 TKKEFICKFCGRHFTK 29 (106)
T ss_dssp CCCCCBCSSSCCBCSS
T ss_pred CCcCeECCCCCCccCC
Confidence 3456899999998875
No 236
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.15 E-value=22 Score=24.53 Aligned_cols=32 Identities=13% Similarity=0.186 Sum_probs=15.0
Q ss_pred ccccCccccCCC-ceecCCCCcccHhhHHHHHh
Q 036338 14 FRCPISLDVMKS-PVSLCTGVTYDRASIQRWLD 45 (408)
Q Consensus 14 ~~Cpi~~~~~~d-Pv~~~cgh~f~r~cI~~~~~ 45 (408)
|.|..|...+.+ +....-|.-||+.|-.+.+.
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~ 66 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVATLE 66 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHHHHHHc
Confidence 455555555433 23334455555555544443
No 237
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=46.75 E-value=8.8 Score=24.70 Aligned_cols=41 Identities=10% Similarity=0.085 Sum_probs=22.3
Q ss_pred cccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 13 FFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
.|.|++|...|.....+ +.=+...-......||.|+..+..
T Consensus 4 ~~~C~~C~~~f~~~~~l-------~~H~~~h~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYL-------NIHLRTHTGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp -CBCTTTCCBCSCHHHH-------HHHHHHHHCCCCEECSSSSCEESS
T ss_pred CccCCCCcchhCChHHH-------HHHHHHcCCCCCcCCCCCcchhCC
Confidence 47788888877765321 011111111223569999877643
No 238
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=46.05 E-value=17 Score=25.60 Aligned_cols=45 Identities=9% Similarity=0.030 Sum_probs=32.7
Q ss_pred CCcccccCccccCCC-ceecCCCCcccH-hhHHHHHhcCCCCCCCccccc
Q 036338 11 PSFFRCPISLDVMKS-PVSLCTGVTYDR-ASIQRWLDSGNNTCPATMQVL 58 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~d-Pv~~~cgh~f~r-~cI~~~~~~~~~~CP~~~~~l 58 (408)
++-|.|..|...+.+ +....-|.-||+ .|-.+.+. ..|-.|+..+
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~---~~C~~C~~~~ 71 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG---PKGFGRGGAE 71 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS---CCCSSCCCSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC---ccCCCcCCce
Confidence 345899999999887 666678899998 58765543 3577776543
No 239
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=45.98 E-value=7.9 Score=28.28 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=11.9
Q ss_pred CCCCCcccccCcccc
Q 036338 8 ITVPSFFRCPISLDV 22 (408)
Q Consensus 8 ~~~~~~~~Cpi~~~~ 22 (408)
.++|+++.||+|+.-
T Consensus 55 edlPddW~CPvCga~ 69 (81)
T 2kn9_A 55 DDIPDDWSCPDCGAA 69 (81)
T ss_dssp TTSCTTCCCTTTCCC
T ss_pred hHCCCCCcCCCCCCC
Confidence 468889999999863
No 240
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.36 E-value=10 Score=26.70 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=9.9
Q ss_pred cccCccccCCCceecCCCCcc
Q 036338 15 RCPISLDVMKSPVSLCTGVTY 35 (408)
Q Consensus 15 ~Cpi~~~~~~dPv~~~cgh~f 35 (408)
.|+-|++...+.++..-|.+|
T Consensus 7 ~C~~C~~~I~~~~v~a~~~~w 27 (73)
T 1wig_A 7 GCDSCEKYITGRVLEAGEKHY 27 (73)
T ss_dssp SCSSSCCCCSSCCBCCSSCCB
T ss_pred CcccCCCEecCeeEEeCCCCC
Confidence 355555555544443444443
No 241
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=44.87 E-value=6.7 Score=26.04 Aligned_cols=14 Identities=21% Similarity=0.515 Sum_probs=11.9
Q ss_pred CCCCCcccccCccc
Q 036338 8 ITVPSFFRCPISLD 21 (408)
Q Consensus 8 ~~~~~~~~Cpi~~~ 21 (408)
.++|+++.||+|+.
T Consensus 30 ~~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 30 EDLPDDWVCPLCGA 43 (52)
T ss_dssp GGSCTTCBCTTTCC
T ss_pred hHCCCCCcCCCCCC
Confidence 36899999999986
No 242
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=44.77 E-value=1.3e+02 Score=24.87 Aligned_cols=74 Identities=18% Similarity=0.139 Sum_probs=50.5
Q ss_pred hHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhc-----CCChHHHHHHHHHHHH
Q 036338 143 LVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQ-----QESVDSRIESLRLLEF 217 (408)
Q Consensus 143 ~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~-----~~~~~~~~~Aa~~L~~ 217 (408)
++..|.+-|.+.+ ..++..|+.+|-.+.. +....++..|. +...+..|++++.. ..+..+|..+..+|..
T Consensus 51 A~ral~krl~~~n-~~vql~AL~LLd~~vk--NCG~~Fh~eva--s~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~ 125 (171)
T 1juq_A 51 AVRLLAHKIQSPQ-EWEALQALTVLEACMK--NCGRRFHNEVG--KFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYS 125 (171)
T ss_dssp HHHHHHHHHTCSS-HHHHHHHHHHHHHHHH--HSHHHHHHHHT--SHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHH--HcCHHHHHHHh--hHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 3445666666655 3344777777777765 33344566676 78889999999862 1267899999999887
Q ss_pred hhcC
Q 036338 218 IAGD 221 (408)
Q Consensus 218 La~~ 221 (408)
-+..
T Consensus 126 W~~~ 129 (171)
T 1juq_A 126 WTMA 129 (171)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 243
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=44.30 E-value=11 Score=32.10 Aligned_cols=44 Identities=11% Similarity=0.043 Sum_probs=30.8
Q ss_pred CCCCCcccccCCCCCccc-H-HHHHHHHHHHHhcCCCCCCCCCCCC
Q 036338 49 NTCPATMQVLQSKEFVPN-R-TLQRLIQIWSDSVQHRVDSSESATG 92 (408)
Q Consensus 49 ~~CP~~~~~l~~~~l~~n-~-~l~~~I~~~~~~~~~~~~~~~~~~~ 92 (408)
..||+|...+.++...|. + .-+..|..|...++..+|.+..+++
T Consensus 107 f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 107 LCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp GBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred hcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 479999988766544442 2 3388899999886545777776665
No 244
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=43.66 E-value=6.9 Score=26.30 Aligned_cols=14 Identities=21% Similarity=0.328 Sum_probs=11.7
Q ss_pred CCCCcccccCcccc
Q 036338 9 TVPSFFRCPISLDV 22 (408)
Q Consensus 9 ~~~~~~~Cpi~~~~ 22 (408)
++|+++.||+|+.-
T Consensus 32 ~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 32 DIPADWVCPDCGVG 45 (55)
T ss_dssp GSCTTCCCTTTCCC
T ss_pred HCCCCCcCCCCCCC
Confidence 58999999999863
No 245
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=43.16 E-value=7 Score=28.79 Aligned_cols=29 Identities=10% Similarity=0.073 Sum_probs=19.4
Q ss_pred cccCccccCCC-----ceecC-CCCcccHhhHHHH
Q 036338 15 RCPISLDVMKS-----PVSLC-TGVTYDRASIQRW 43 (408)
Q Consensus 15 ~Cpi~~~~~~d-----Pv~~~-cgh~f~r~cI~~~ 43 (408)
.||-|...|.. +|+-+ ||+.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 59988876532 35554 8888877775555
No 246
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=41.89 E-value=3.6e+02 Score=28.98 Aligned_cols=214 Identities=11% Similarity=0.064 Sum_probs=118.7
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccCHHHHHHHHHHHhcC---Chh-HHHHHHHHHHHhhh-Chh----hhhh
Q 036338 66 NRTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAISK---NED-FSENLTKIVAFAKE-SDE----NKTF 136 (408)
Q Consensus 66 n~~l~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~---~~~-~~~Al~~L~~la~~-~~~----~r~~ 136 (408)
+...|+..++|..+-.. . ++........|..+ +.. |.-|+..|.+..+. +++ .+..
T Consensus 21 d~~~r~~A~~~L~~~q~-s--------------p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~ 85 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRS-S--------------STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQM 85 (980)
T ss_dssp CHHHHHHHHHHHHHHHH-S--------------TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHc-C--------------hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 56677778888765431 1 23455556666554 345 77788888777652 233 4445
Q ss_pred hhhcCChHHHHHHHhhcC---c-chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCCh-HHHHHH
Q 036338 137 LAKFDGLVVMLVEILSNV---N-DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESV-DSRIES 211 (408)
Q Consensus 137 i~~~~G~i~~Lv~lL~s~---~-~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~-~~~~~A 211 (408)
+.+. |+.++.+. . ..-+......+|..+.. .+... .=...++-|+.++.++ +. ......
T Consensus 86 lr~~------ll~~l~~~~~~~~~~~IrnKL~~~la~l~~--~~~p~-------~Wp~~i~~l~~~~~~~-~~~~~~~~~ 149 (980)
T 3ibv_A 86 IRDS------VWSYIKELSFLDEPAYISNAVQHLLTLLFL--QLYPS-------NWNDFFASLQGVIAAS-SQSEFSNFY 149 (980)
T ss_dssp HHHH------HHHHHHHCCSTTSCTHHHHHHHHHHHHHHH--HHTTT-------TCTTHHHHHHHHHHHH-CCHHHHHHH
T ss_pred HHHH------HHHHHHHhcCCCCcHHHHHHHHHHHHHHHH--HhCcc-------cCchHHHHHHHHhcCC-ChhHHHHHH
Confidence 5543 45555432 1 12233555556666654 22110 0246778888888765 44 233344
Q ss_pred HHHHHHhhcC----c------------chhhHHhhh--cChHHHHHHhccc---CCCHHHHHHHHHHHHHhccCcchHHH
Q 036338 212 LRLLEFIAGD----A------------DSKVKIAER--DGLLAETVKSLSL---DSDRRLIEASLSCLITISSSKRAKTK 270 (408)
Q Consensus 212 a~~L~~La~~----~------------~~~~~i~~~--~g~i~~Lv~lL~~---~~~~~~~~~A~~aL~~Ls~~~~n~~~ 270 (408)
.++|..++.. . +-+..+... .-+++....+|.. ..++..+..++.+|......-+ ...
T Consensus 150 LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~ 228 (980)
T 3ibv_A 150 LKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INL 228 (980)
T ss_dssp HHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHH
T ss_pred HHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHh
Confidence 4455433321 0 002233221 0113333344432 1277888999999998877533 345
Q ss_pred HHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC---CHHHHHHHH
Q 036338 271 LINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST---TKQGRMEIC 334 (408)
Q Consensus 271 ~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~---~~~~~~~~~ 334 (408)
+++...++.+..+|. ++.+.+.|+.+|..+.. .++.+..++
T Consensus 229 i~~~~ll~~l~~~L~-----------------------~~~~r~~A~ecL~ei~~k~~~~~~k~~li 272 (980)
T 3ibv_A 229 IVNEPCMNLLYSFLQ-----------------------IEELRCAACETMTEIVNKKMKPLEKLNLL 272 (980)
T ss_dssp HHCHHHHHHHHHHTT-----------------------SHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred hhcchHHHHHHHHcC-----------------------ChHHHHHHHHHHHHHHHcCCChhhHHHHH
Confidence 567778888888886 35788888888888763 455555544
No 247
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=41.69 E-value=90 Score=25.50 Aligned_cols=71 Identities=17% Similarity=0.205 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhc-CChh-HHHHHHHHHHHhhhC-hhhhhhhhhcCChHHH-HHHHhhcCc--chhhHHHHHHHHHHh
Q 036338 99 QDEVKDIIRVAIS-KNED-FSENLTKIVAFAKES-DENKTFLAKFDGLVVM-LVEILSNVN--DVNMLKQVIRVLDLI 170 (408)
Q Consensus 99 ~~~i~~Lv~~L~s-~~~~-~~~Al~~L~~la~~~-~~~r~~i~~~~G~i~~-Lv~lL~s~~--~~~~~e~A~~~L~~L 170 (408)
.+.++.|.+.|++ .++. +..|+..|-.+.+.. ......|.+. ..+.- |+.++.... ..++.+.++..+..-
T Consensus 52 k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~-~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 52 KDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQ-DFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSH-HHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhH-HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 6789999999984 6665 899999999998875 5666777777 88887 788885322 344557777766554
No 248
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=41.59 E-value=5.9 Score=33.06 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=15.5
Q ss_pred CCCCcccHhhHHHHHhcCCCCCCCccccc
Q 036338 30 CTGVTYDRASIQRWLDSGNNTCPATMQVL 58 (408)
Q Consensus 30 ~cgh~f~r~cI~~~~~~~~~~CP~~~~~l 58 (408)
.|||.|+.. .....||.|+.++
T Consensus 137 ~Cg~~~~~~-------~~~~~Cp~CG~~~ 158 (165)
T 2lcq_A 137 GCGRKFSTL-------PPGGVCPDCGSKV 158 (165)
T ss_dssp SSCCEESSC-------CGGGBCTTTCCBE
T ss_pred CCCCcccCC-------CCCCcCCCCCCcc
Confidence 599999754 1124799999765
No 249
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=41.56 E-value=1.1e+02 Score=33.50 Aligned_cols=101 Identities=9% Similarity=0.157 Sum_probs=60.2
Q ss_pred chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHH----HHHHHHHHhhcCcchhhHHhhh
Q 036338 156 DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRI----ESLRLLEFIAGDADSKVKIAER 231 (408)
Q Consensus 156 ~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~----~Aa~~L~~La~~~~~~~~i~~~ 231 (408)
+-+..+.++++++.++.+..++.. +..+. .+|+.|+.+.......+-|. ..+++++..+..-.....+..
T Consensus 492 sW~~lea~~~aigaIag~~~~~~E-~~~Lp----~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~- 565 (1073)
T 3gjx_A 492 SWKNLNTLCWAIGSISGAMHEEDE-KRFLV----TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK- 565 (1073)
T ss_dssp CHHHHHHHHHHHHHTTTSSCHHHH-HHHHH----HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-
T ss_pred CHHHHhHHHHHHHHHHCcCCcccc-cchHH----HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-
Confidence 345568899999998753332221 34443 67888888776431223332 222455544432222233333
Q ss_pred cChHHHHHHhcccCCCHHHHHHHHHHHHHhccC
Q 036338 232 DGLLAETVKSLSLDSDRRLIEASLSCLITISSS 264 (408)
Q Consensus 232 ~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~ 264 (408)
-.+..|++.+.+. ++.++++|+.|+..+|..
T Consensus 566 -~vl~~L~~~m~~~-~~~vq~aA~~af~~i~~~ 596 (1073)
T 3gjx_A 566 -TVVNKLFEFMHET-HDGVQDMACDTFIKIAQK 596 (1073)
T ss_dssp -HHHHHHHHHTTCC-STTHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH
Confidence 3567777777765 789999999999999863
No 250
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=40.41 E-value=8.5 Score=27.29 Aligned_cols=15 Identities=20% Similarity=0.516 Sum_probs=12.3
Q ss_pred CCCCCcccccCcccc
Q 036338 8 ITVPSFFRCPISLDV 22 (408)
Q Consensus 8 ~~~~~~~~Cpi~~~~ 22 (408)
.++|+++.||+|+.-
T Consensus 35 ~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 35 VDLSDSFMCPACRSP 49 (70)
T ss_dssp GGSCTTCBCTTTCCB
T ss_pred hhCCCCCcCCCCCCC
Confidence 358999999999874
No 251
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=39.93 E-value=15 Score=27.61 Aligned_cols=44 Identities=14% Similarity=-0.043 Sum_probs=29.2
Q ss_pred CCCCCCcccccCCCCCcc-c-H-HHHHHHHHHHHhcCCCCCCCCCCCC
Q 036338 48 NNTCPATMQVLQSKEFVP-N-R-TLQRLIQIWSDSVQHRVDSSESATG 92 (408)
Q Consensus 48 ~~~CP~~~~~l~~~~l~~-n-~-~l~~~I~~~~~~~~~~~~~~~~~~~ 92 (408)
.+.||+|...+.+....+ - + .-+..|++|...+. ..|....++.
T Consensus 22 ~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~-~cP~~~~~l~ 68 (98)
T 1wgm_A 22 EFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLT 68 (98)
T ss_dssp TTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSC-BCTTTCSBCC
T ss_pred hcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCC-CCCCCCCCCC
Confidence 357999998876654433 2 2 23788999988643 5666666654
No 252
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=39.65 E-value=10 Score=31.91 Aligned_cols=20 Identities=20% Similarity=0.219 Sum_probs=14.4
Q ss_pred CCCCcccHhhHHHHHhcCCCCCCCcccc
Q 036338 30 CTGVTYDRASIQRWLDSGNNTCPATMQV 57 (408)
Q Consensus 30 ~cgh~f~r~cI~~~~~~~~~~CP~~~~~ 57 (408)
.|||+|.. .-...||.|+.+
T Consensus 143 ~CG~i~~~--------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 143 ICGYTAVD--------EAPEYCPVCGAP 162 (170)
T ss_dssp TTCCEEES--------CCCSBCTTTCCB
T ss_pred CCCCeeCC--------CCCCCCCCCCCC
Confidence 49999972 223479999865
No 253
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=39.03 E-value=22 Score=25.84 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=24.3
Q ss_pred CCcccccCccccCCCceecCCCCcccHhhHHHHHhc--C--CCCCCCcccccCC
Q 036338 11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDS--G--NNTCPATMQVLQS 60 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~--~--~~~CP~~~~~l~~ 60 (408)
.+.+.|++|++.|... .-+...... + .+.|+.|++.|..
T Consensus 26 ~~~h~C~~Cgk~F~~~-----------~~L~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 26 AECHLCPVCGESFASK-----------GAQERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp CTTEECTTSCCEESSH-----------HHHHHHHHTTSCSSSEECTTSSCEESS
T ss_pred CCCEECCCCCCCcCcH-----------HHHhhhhhhccCCCccCCCCCCCEeCC
Confidence 3457898888877665 334444332 2 3569999987643
No 254
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.00 E-value=21 Score=24.57 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=24.2
Q ss_pred cccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCC
Q 036338 15 RCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEF 63 (408)
Q Consensus 15 ~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l 63 (408)
.|+-|.+...+.++..-|.+|-..| +.|-.|+.+|....+
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~~~f 46 (70)
T 2d8x_A 7 GCHQCGEFIIGRVIKAMNNSWHPEC---------FRCDLCQEVLADIGF 46 (70)
T ss_dssp BCSSSCCBCCSCCEEETTEEECTTT---------SBCSSSCCBCSSSCC
T ss_pred cCccCCCEecceEEEECcccccccC---------CEeCCCCCcCCCCcc
Confidence 5777777766665555555554444 457777766655443
No 255
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=38.59 E-value=48 Score=23.78 Aligned_cols=17 Identities=12% Similarity=0.178 Sum_probs=12.4
Q ss_pred CCCCcccccC--ccccCCC
Q 036338 9 TVPSFFRCPI--SLDVMKS 25 (408)
Q Consensus 9 ~~~~~~~Cpi--~~~~~~d 25 (408)
+-...|.|++ |...|..
T Consensus 11 ~~~~~~~C~~~~C~~~f~~ 29 (100)
T 2ebt_A 11 EKRRIHYCDYPGCTKVYTK 29 (100)
T ss_dssp CSCCCEECCSSSCCCEESC
T ss_pred ccCcceEcCCCCCCCcccC
Confidence 3445689997 9888864
No 256
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=38.24 E-value=2.1e+02 Score=25.25 Aligned_cols=108 Identities=7% Similarity=-0.050 Sum_probs=70.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhhc--CcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCc---c
Q 036338 192 LNSLLLVLKQQESVDSRIESLRLLEFIAG--DADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSK---R 266 (408)
Q Consensus 192 i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~--~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~---~ 266 (408)
++.+...+....+-.+|+.++.++..++. +++ ..++.+....+++ +..+++.|...++--+... .
T Consensus 105 L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---------~~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~~~~k~ 174 (240)
T 3l9t_A 105 LIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---------KALPIIDEWLKSS-NLHTRRAATEGLRIWTNRPYFKE 174 (240)
T ss_dssp HHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---------TTHHHHHHHHHCS-SHHHHHHHHHHTCSGGGSTTTTT
T ss_pred HHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---------HHHHHHHHHhcCC-CHHHHHHHHHhhHHHhccchhhc
Confidence 34444423333388999999999998874 232 1467788888887 9999999999886533321 1
Q ss_pred hHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC-CHHHHHHHHh
Q 036338 267 AKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST-TKQGRMEICQ 335 (408)
Q Consensus 267 n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~~~ 335 (408)
+... ++|.|-.+.. +.+.-++......|..++. +|+--..++.
T Consensus 175 dp~~-----ll~iL~~L~~---------------------D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 175 NPNE-----AIRRIADLKE---------------------DVSEYVRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp CHHH-----HHHHHHTTTT---------------------CSCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHH-----HHHHHHHhcC---------------------ChHHHHHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 1111 2333333333 3477888888999999997 5777777665
No 257
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=37.86 E-value=12 Score=29.29 Aligned_cols=21 Identities=5% Similarity=0.064 Sum_probs=13.6
Q ss_pred CCCCcccHhhHHHHHhcCCC-CCCCcccc
Q 036338 30 CTGVTYDRASIQRWLDSGNN-TCPATMQV 57 (408)
Q Consensus 30 ~cgh~f~r~cI~~~~~~~~~-~CP~~~~~ 57 (408)
.|||.|.-. .... .||.|+.+
T Consensus 78 ~CG~~~e~~-------~~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 78 DCSHVFKPN-------ALDYGVCEKCHSK 99 (119)
T ss_dssp SSSCEECSC-------CSTTCCCSSSSSC
T ss_pred CCCCEEeCC-------CCCCCcCccccCC
Confidence 367777652 2345 79999865
No 258
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=37.77 E-value=40 Score=23.30 Aligned_cols=45 Identities=13% Similarity=0.011 Sum_probs=32.0
Q ss_pred CCcccccCccccCCCceec--CCCCcccHhhHHHHHhc---CCCCCCCcccc
Q 036338 11 PSFFRCPISLDVMKSPVSL--CTGVTYDRASIQRWLDS---GNNTCPATMQV 57 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~--~cgh~f~r~cI~~~~~~---~~~~CP~~~~~ 57 (408)
...-.|.+|++- +-++. .|...|-..|+.-.+.. +...||.|...
T Consensus 10 ~~~~~C~vC~~~--~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG--TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC--TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC--CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 345679999973 44555 38899999998765543 45689999754
No 259
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=37.69 E-value=35 Score=23.57 Aligned_cols=28 Identities=14% Similarity=0.041 Sum_probs=20.4
Q ss_pred CCcccccCccccCCC-ceecCCCCcccHh
Q 036338 11 PSFFRCPISLDVMKS-PVSLCTGVTYDRA 38 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~d-Pv~~~cgh~f~r~ 38 (408)
+..-.|..|.+-..= |+.--||.+||-.
T Consensus 13 ~~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wg2_A 13 RPNNRCFSCNKKVGVMGFKCKCGSTFCGS 41 (64)
T ss_dssp CCSCSCTTTCCCCTTSCEECTTSCEECSS
T ss_pred CcCCcChhhCCcccccCeEeecCCEeccc
Confidence 345689999985333 5666799999865
No 260
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.40 E-value=24 Score=25.68 Aligned_cols=41 Identities=15% Similarity=0.326 Sum_probs=30.7
Q ss_pred ccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCC
Q 036338 14 FRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEF 63 (408)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l 63 (408)
..|+-|.+...+.++..-|+.|-..| +.|-.|+.+|....+
T Consensus 26 ~~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~~~~f 66 (90)
T 2dar_A 26 PMCAHCNQVIRGPFLVALGKSWHPEE---------FNCAHCKNTMAYIGF 66 (90)
T ss_dssp CBBSSSCCBCCSCEEEETTEEECTTT---------CBCSSSCCBCSSSCB
T ss_pred CCCccCCCEecceEEEECCccccccC---------CccCCCCCCCCCCEe
Confidence 46889988888887777788887776 458888877765443
No 261
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.21 E-value=26 Score=24.00 Aligned_cols=24 Identities=4% Similarity=0.083 Sum_probs=10.3
Q ss_pred ccCccccCCCceecCCCCcccHhh
Q 036338 16 CPISLDVMKSPVSLCTGVTYDRAS 39 (408)
Q Consensus 16 Cpi~~~~~~dPv~~~cgh~f~r~c 39 (408)
|+-|.+...+..+..-|.+|-..|
T Consensus 8 C~~C~~~I~~~~~~a~~~~~H~~C 31 (70)
T 2d8z_A 8 CVQCKKPITTGGVTYREQPWHKEC 31 (70)
T ss_dssp CSSSCCBCCSSEEESSSSEEETTT
T ss_pred CcccCCeeccceEEECccccCCCC
Confidence 444444444443333444444333
No 262
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=37.07 E-value=40 Score=20.61 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=21.5
Q ss_pred CCCcccccCccccCCCceecCCCCcccHhhHHHHHhc----CCCCCCCccc
Q 036338 10 VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDS----GNNTCPATMQ 56 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~----~~~~CP~~~~ 56 (408)
-...|.|++|...|...- .+...... ..+.|+.|++
T Consensus 9 ~~k~~~C~~C~k~f~~~~-----------~L~~H~~~H~~~k~~~C~~C~k 48 (48)
T 2epr_A 9 TRKQVACEICGKIFRDVY-----------HLNRHKLSHSGEKPYSSGPSSG 48 (48)
T ss_dssp CCCSEEETTTTEEESSHH-----------HHHHHGGGSCSCCCCCSCCCCC
T ss_pred CCcCeeCCCCCcccCCHH-----------HHHHHHHhcCCCCCccCCCCCC
Confidence 345688998887776643 23333322 2357999863
No 263
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=36.94 E-value=18 Score=23.14 Aligned_cols=38 Identities=8% Similarity=0.143 Sum_probs=23.6
Q ss_pred CCcccccCccccCCCceecCCCCcccHhhHHHHHh-c----CCCCCCCcccccC
Q 036338 11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLD-S----GNNTCPATMQVLQ 59 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~-~----~~~~CP~~~~~l~ 59 (408)
...|.|++|...|... ..+..... . ....|+.|++.|.
T Consensus 10 ~k~~~C~~C~k~f~~~-----------~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 10 GKPYICQSCGKGFSRP-----------DHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp SCCEECSSSCCEESSH-----------HHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCCeECCCCCcccCCH-----------HHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 3458898887766654 33444432 1 2357999998764
No 264
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=36.90 E-value=4.5e+02 Score=28.66 Aligned_cols=208 Identities=13% Similarity=0.148 Sum_probs=117.9
Q ss_pred cHHHHHHHHHHHHhcCCCCCCCCCCCCCCCccCHHHHHHHHHHHhcC-Chh-HHHHHHHHHHHhhh-----Chhhhhhhh
Q 036338 66 NRTLQRLIQIWSDSVQHRVDSSESATGRPVVLSQDEVKDIIRVAISK-NED-FSENLTKIVAFAKE-----SDENKTFLA 138 (408)
Q Consensus 66 n~~l~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Lv~~L~s~-~~~-~~~Al~~L~~la~~-----~~~~r~~i~ 138 (408)
+..-|+..++|..+-.. . ++.+..+...|..+ +.. |.-|+..|.+.... +++.+..+.
T Consensus 41 ~~~~r~qA~~~L~q~q~-s--------------p~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR 105 (1073)
T 3gjx_A 41 EGAQQRMAQEVLTHLKE-H--------------PDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIK 105 (1073)
T ss_dssp SHHHHHHHHHHHHTSSC-C--------------SCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHc-C--------------chHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHH
Confidence 34457777888865331 1 22333444444443 445 78899888887754 344555555
Q ss_pred hcCChHHHHHHHhhcCc----chhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhcCCChHHHHHHHHH
Q 036338 139 KFDGLVVMLVEILSNVN----DVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQQESVDSRIESLRL 214 (408)
Q Consensus 139 ~~~G~i~~Lv~lL~s~~----~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~ 214 (408)
+. .+..+...-.++. +..++.....+|..++. .+-+. .=...++-++.+++. +.........+
T Consensus 106 ~~--Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k--~~~P~-------~Wp~fi~dLv~~~~~--~~~~~~~~L~I 172 (1073)
T 3gjx_A 106 KY--VVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILK--QEWPK-------HWPTFISDIVGASRT--SESLCQNNMVI 172 (1073)
T ss_dssp HH--HHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHH--HHTTT-------TCTTHHHHHHHHHHH--CHHHHHHHHHH
T ss_pred HH--HHHHHHHHccCccccccchHHHHHHHHHHHHHHH--HhChh-------hccHHHHHHHHHhCC--CHHHHHHHHHH
Confidence 53 3444444332221 12223444445555553 22110 024667888887765 35566777778
Q ss_pred HHHhhcC-cc-------------hhhHHhhh-cChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHH
Q 036338 215 LEFIAGD-AD-------------SKVKIAER-DGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITE 279 (408)
Q Consensus 215 L~~La~~-~~-------------~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~ 279 (408)
|..|+.. .+ -+..+... ..++..+..+|....++++...++.+|..+.+.-+ ...+++.+.++.
T Consensus 173 L~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~-i~~i~~~~ll~~ 251 (1073)
T 3gjx_A 173 LKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP-LGYIFETKLIST 251 (1073)
T ss_dssp HHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC-THHHHSSSHHHH
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC-HHHhccchHHHH
Confidence 8777653 11 12233321 12334444455444578888999999999988643 345678888888
Q ss_pred HH-HHhccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHhC
Q 036338 280 LG-KLITDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 280 Lv-~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~~ 325 (408)
|+ .+|. ++.+...|+.+|..+..
T Consensus 252 L~~~~L~-----------------------~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 252 LIYKFLN-----------------------VPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHHTSS-----------------------SHHHHHHHHHHHHHHHH
T ss_pred HHHHhcC-----------------------ChHHHHHHHHHHHHHHh
Confidence 74 6664 45788999999988864
No 265
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=36.11 E-value=17 Score=27.45 Aligned_cols=44 Identities=7% Similarity=-0.068 Sum_probs=29.2
Q ss_pred CCCCCCcccccCCCCCcc-cH-HHHHHHHHHHHhcCCCCCCCCCCCC
Q 036338 48 NNTCPATMQVLQSKEFVP-NR-TLQRLIQIWSDSVQHRVDSSESATG 92 (408)
Q Consensus 48 ~~~CP~~~~~l~~~~l~~-n~-~l~~~I~~~~~~~~~~~~~~~~~~~ 92 (408)
...||+|...+.+....+ .+ .-+..|.+|...+ ..+|....+++
T Consensus 29 ~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~-~~cP~~~~~l~ 74 (100)
T 2kre_A 29 EFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNS-PTDPFNRQTLT 74 (100)
T ss_dssp TTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSC-SBCSSSCCBCC
T ss_pred hhCCcCccCcccCCeECCCCCEEchHHHHHHHHcC-CCCCCCCCCCC
Confidence 357999998876654444 22 3388899998754 35666666654
No 266
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=35.97 E-value=14 Score=28.26 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=17.2
Q ss_pred CCCceecCCCCcccHhhHHHHHhcCCCCCCCcccc
Q 036338 23 MKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQV 57 (408)
Q Consensus 23 ~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~ 57 (408)
+..|.-..||++|+.. + .....||.|+..
T Consensus 65 v~p~~C~~CG~~F~~~-----~-~kPsrCP~CkSe 93 (105)
T 2gmg_A 65 IKPAQCRKCGFVFKAE-----I-NIPSRCPKCKSE 93 (105)
T ss_dssp ECCCBBTTTCCBCCCC-----S-SCCSSCSSSCCC
T ss_pred EECcChhhCcCeeccc-----C-CCCCCCcCCCCC
Confidence 3445556799999211 0 123569999853
No 267
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=35.78 E-value=11 Score=27.89 Aligned_cols=15 Identities=20% Similarity=0.359 Sum_probs=12.1
Q ss_pred CCCCCcccccCcccc
Q 036338 8 ITVPSFFRCPISLDV 22 (408)
Q Consensus 8 ~~~~~~~~Cpi~~~~ 22 (408)
.++|+++.||+|+.-
T Consensus 63 edlPddW~CPvCga~ 77 (87)
T 1s24_A 63 EDIPDDWCCPDCGAT 77 (87)
T ss_dssp GGCCTTCCCSSSCCC
T ss_pred hHCCCCCCCCCCCCC
Confidence 368899999999863
No 268
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=35.42 E-value=5.1 Score=28.29 Aligned_cols=41 Identities=12% Similarity=0.251 Sum_probs=24.6
Q ss_pred CCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCccc
Q 036338 9 TVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPN 66 (408)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n 66 (408)
.+-+-+.||+|+.-+. |.+. .+.-.||.|+..+.-.+-+|+
T Consensus 4 ~LL~iL~CP~ck~~L~----------~~~~-------~~~LiC~~cg~~YPI~dGIPv 44 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLE----------YHQD-------KQELWSRQAKLAYPIKDGIPY 44 (68)
T ss_dssp SSSCCCBCSSSCCBCE----------EETT-------TTEEEETTTTEEEEEETTEEC
T ss_pred HHhhheECCCCCCcCe----------EeCC-------CCEEEcCCCCcEecCCCCeee
Confidence 3456788999996433 2221 134468888877655554444
No 269
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=35.06 E-value=8.5 Score=27.27 Aligned_cols=42 Identities=19% Similarity=0.407 Sum_probs=26.1
Q ss_pred CCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccH
Q 036338 9 TVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNR 67 (408)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~ 67 (408)
.+-+-+.||+|+. |.. |... .+.-.||.|+..+.-.+-+|+.
T Consensus 4 ~LL~iL~CP~ck~----~L~------~~~~-------~~~LiC~~cg~~YPI~dGIPvm 45 (70)
T 2js4_A 4 RLLDILVCPVCKG----RLE------FQRA-------QAELVCNADRLAFPVRDGVPIM 45 (70)
T ss_dssp CCCCCCBCTTTCC----BEE------EETT-------TTEEEETTTTEEEEEETTEECC
T ss_pred HHhhheECCCCCC----cCE------EeCC-------CCEEEcCCCCceecCCCCeeee
Confidence 4556789999998 433 2221 2345699998877655555543
No 270
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=34.99 E-value=47 Score=23.61 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=11.3
Q ss_pred CcccccCccccCCCc
Q 036338 12 SFFRCPISLDVMKSP 26 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dP 26 (408)
..|.|++|...|.+.
T Consensus 6 ~~~~C~~C~~~f~~~ 20 (95)
T 2yt9_A 6 SGVACEICGKIFRDV 20 (95)
T ss_dssp SCEECSSSCCEESSS
T ss_pred CCeECCCCCCccCCh
Confidence 457899988888653
No 271
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=34.98 E-value=40 Score=24.09 Aligned_cols=47 Identities=11% Similarity=0.162 Sum_probs=26.4
Q ss_pred CcccccCccccCCC---------------ceec-CCCCcccHhh-HHHHHhc--C--CCCCCCccccc
Q 036338 12 SFFRCPISLDVMKS---------------PVSL-CTGVTYDRAS-IQRWLDS--G--NNTCPATMQVL 58 (408)
Q Consensus 12 ~~~~Cpi~~~~~~d---------------Pv~~-~cgh~f~r~c-I~~~~~~--~--~~~CP~~~~~l 58 (408)
..|.|++|...|.. |..- .||.+|-... +...... + ...|+.|+..+
T Consensus 7 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f 74 (96)
T 2dmd_A 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYAS 74 (96)
T ss_dssp CCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEE
T ss_pred cCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCcc
Confidence 44789999988875 3332 2666665432 2233322 1 23577776654
No 272
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=34.90 E-value=16 Score=32.74 Aligned_cols=44 Identities=11% Similarity=0.045 Sum_probs=29.9
Q ss_pred CCCCCcccccCCCCCcc-cH-HHHHHHHHHHHhcCCCCCCCCCCCC
Q 036338 49 NTCPATMQVLQSKEFVP-NR-TLQRLIQIWSDSVQHRVDSSESATG 92 (408)
Q Consensus 49 ~~CP~~~~~l~~~~l~~-n~-~l~~~I~~~~~~~~~~~~~~~~~~~ 92 (408)
..||+|...+.++...| .+ .-+..|.+|...++..+|....+.+
T Consensus 209 ~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 209 LCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp TBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred cCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 46999998876544333 22 2377789999876655777776665
No 273
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=34.87 E-value=32 Score=24.18 Aligned_cols=15 Identities=7% Similarity=0.113 Sum_probs=10.8
Q ss_pred CCcccccC--ccccCCC
Q 036338 11 PSFFRCPI--SLDVMKS 25 (408)
Q Consensus 11 ~~~~~Cpi--~~~~~~d 25 (408)
+..|.|++ |...|..
T Consensus 3 ~~~~~C~~~~C~~~f~~ 19 (89)
T 2wbs_A 3 TATHTCDYAGCGKTYTK 19 (89)
T ss_dssp CCCEECCSTTTCCEESS
T ss_pred CCCeeCCCCCCCCcCCC
Confidence 35678888 8877764
No 274
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=34.79 E-value=24 Score=29.91 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=28.8
Q ss_pred CCcccccCccccCCCc-eecCCCCcccHhhHHHHHh
Q 036338 11 PSFFRCPISLDVMKSP-VSLCTGVTYDRASIQRWLD 45 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dP-v~~~cgh~f~r~cI~~~~~ 45 (408)
++-|.|..|...|.+- ....-|.-||+.|..+-+.
T Consensus 32 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~ 67 (192)
T 1b8t_A 32 KSCFLCMVCKKNLDSTTVAVHGDEIYCKSCYGKKYG 67 (192)
T ss_dssp TTTCBCTTTCCBCCSSSEEEETTEEEEHHHHHHHHS
T ss_pred CCCCcCcccCCcCCCCeeEecCCEeeChhhhHhhcC
Confidence 4569999999999884 4556899999999988765
No 275
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=34.51 E-value=9.1 Score=28.12 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=25.4
Q ss_pred CcccccCccc-cCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcccHHH
Q 036338 12 SFFRCPISLD-VMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPNRTL 69 (408)
Q Consensus 12 ~~~~Cpi~~~-~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n~~l 69 (408)
..+.||-|+. .+.+|-+ +...||.|+..+.--...|+...
T Consensus 26 ~~y~Cp~CG~~~v~r~at------------------GiW~C~~Cg~~~aggay~~~t~~ 66 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGT------------------GIWQCSYCDYKFTGGSYKPETPG 66 (83)
T ss_dssp SCEECSSSCCEEEEEEET------------------TEEEETTTCCEEECCSSSSSCHH
T ss_pred ccCcCCCCCCcceeccCC------------------CeEECCCCCCEecCCEecccchH
Confidence 4678999887 4444432 33458888877766666666543
No 276
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=33.98 E-value=23 Score=30.21 Aligned_cols=46 Identities=15% Similarity=0.046 Sum_probs=28.2
Q ss_pred ccccCccccCC-----CceecCCC----CcccHhhHH----------HH---HhcCC-----CCCCCcccccC
Q 036338 14 FRCPISLDVMK-----SPVSLCTG----VTYDRASIQ----------RW---LDSGN-----NTCPATMQVLQ 59 (408)
Q Consensus 14 ~~Cpi~~~~~~-----dPv~~~cg----h~f~r~cI~----------~~---~~~~~-----~~CP~~~~~l~ 59 (408)
-.|+.|+++-- ---+-+.| +++||+|=. +| ++... ..||.|+.+..
T Consensus 76 K~C~~Cg~~Kp~seF~rnkt~~DG~~~l~s~CkeC~~~lr~YGIT~eey~~L~e~Qg~~~~~G~C~ICg~~~~ 148 (200)
T 3gox_A 76 KICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKRSI 148 (200)
T ss_dssp EECTTTCBEEEGGGSCEEEECTTSCEEECSSCHHHHHHHHCSCCCHHHHHHHHTTCCCTTCEEECTTTCCEEE
T ss_pred eECCCCCCCcchhhhcccccCCCCCcccCccChhhhhccCCcCCCHHHHHHHHHHcccCCCCCcCcCCCCCCC
Confidence 46999988421 11123467 899999943 11 22233 56999998764
No 277
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=33.77 E-value=46 Score=22.97 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=20.1
Q ss_pred CcccccCccccCC-CceecCCCCcccHh
Q 036338 12 SFFRCPISLDVMK-SPVSLCTGVTYDRA 38 (408)
Q Consensus 12 ~~~~Cpi~~~~~~-dPv~~~cgh~f~r~ 38 (408)
..-.|..|.+-.- -|+.-.||.+||-.
T Consensus 14 ~~~rC~~C~kkvgl~~f~CrCg~~FC~~ 41 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMCRCGTTFCGS 41 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECSSSCEECTT
T ss_pred cCCcChhhCCccCccCEEeecCCEeccc
Confidence 4568999998533 36666799999965
No 278
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=33.54 E-value=24 Score=27.68 Aligned_cols=38 Identities=11% Similarity=0.150 Sum_probs=29.1
Q ss_pred cccccCccccCCCce-ecCCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338 13 FFRCPISLDVMKSPV-SLCTGVTYDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 13 ~~~Cpi~~~~~~dPv-~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
...|+-|++...+.. +..-|..|=..| +.|-.|+.+|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~C---------F~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRC---------LKCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTT---------SBCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEcccc---------cCcCcCCCccc
Confidence 358999999888874 556788887777 45888888875
No 279
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.32 E-value=35 Score=24.14 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=21.5
Q ss_pred cccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccC
Q 036338 15 RCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQ 59 (408)
Q Consensus 15 ~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~ 59 (408)
.|+-|.+...+.++..-|..|-.+| +.|-.|+.+|.
T Consensus 17 ~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~ 52 (81)
T 1x6a_A 17 FCHGCSLLMTGPFMVAGEFKYHPEC---------FACMSCKVIIE 52 (81)
T ss_dssp BCTTTCCBCCSCCBCCTTCCBCTTS---------CBCTTTCCBCC
T ss_pred cCccCCCCcCceEEEECCceecccc---------CCccCCCCccC
Confidence 5777777666666555555554444 34666666664
No 280
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=33.08 E-value=91 Score=31.72 Aligned_cols=86 Identities=17% Similarity=0.082 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHhhcCcchhhHHhhhcChHHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHh
Q 036338 205 VDSRIESLRLLEFIAGDADSKVKIAERDGLLAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLI 284 (408)
Q Consensus 205 ~~~~~~Aa~~L~~La~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL 284 (408)
..+|+.+|.+|..+ ..-+.. ..++..|+..+..+ .=+++..++-.|..+ .+-... =.++++.++.-|
T Consensus 242 APVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL---~DLL~~--Ld~Vv~aVL~GL 308 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSG-DWQVQFSGLIALGYL---KEFVED--KDGLCRKLVSLL 308 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCS-CHHHHHHHHHHHHHT---GGGCCC--HHHHHHHHHHHT
T ss_pred eehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCC-CeeehhhhHHHHHHH---HHHHHH--HHHHHHHHHhhc
Confidence 46899999999998 543322 23566666666654 568999999999988 110000 256778888888
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCcchHHHHHHHHHHHh
Q 036338 285 TDGHNGNGSGNGNGNGNGNGSGNGTVLITEKALRLVEILS 324 (408)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~L~~L~ 324 (408)
+++ +..++..|+.+|.-++
T Consensus 309 ~D~---------------------DDDVRAVAAetLiPIA 327 (800)
T 3oc3_A 309 SSP---------------------DEDIKLLSAELLCHFP 327 (800)
T ss_dssp TCS---------------------SHHHHHHHHHHHTTSC
T ss_pred CCc---------------------ccHHHHHHHHHhhhhc
Confidence 754 8899999999999888
No 281
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=32.96 E-value=62 Score=23.66 Aligned_cols=37 Identities=8% Similarity=-0.028 Sum_probs=28.2
Q ss_pred cCCCCCCcccccCccccCCCceecC---CCCcccHhhHHHH
Q 036338 6 LYITVPSFFRCPISLDVMKSPVSLC---TGVTYDRASIQRW 43 (408)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dPv~~~---cgh~f~r~cI~~~ 43 (408)
+-..++.+-.|+||...=.+ ..++ ||-.|=-.|+++-
T Consensus 8 ~~e~~~~D~~C~VC~~~t~~-~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 8 PREPVVNDEMCDVCEVWTAE-SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp SCCCCCCSCCCTTTCCCCSS-CCSSCSSSSSCCCHHHHHHH
T ss_pred cccCCCCCcccCcccccccc-ceeccccccccccHhhcccc
Confidence 44567888999999865444 4444 8999999999995
No 282
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=32.82 E-value=22 Score=24.05 Aligned_cols=38 Identities=11% Similarity=0.170 Sum_probs=24.5
Q ss_pred cccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCC
Q 036338 15 RCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSK 61 (408)
Q Consensus 15 ~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~ 61 (408)
.|+-|.+...+.++..-|..|-..| +.|-.|+.+|...
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~~ 44 (66)
T 1nyp_A 7 ICGACRRPIEGRVVNAMGKQWHVEH---------FVCAKCEKPFLGH 44 (66)
T ss_dssp EETTTTEECCSCEECCTTSBEETTT---------CBCTTTCCBCSSS
T ss_pred CCcccCCEecceEEEECccccccCc---------CEECCCCCCCCCC
Confidence 5777777666666666666666655 3466776666543
No 283
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=32.79 E-value=13 Score=23.86 Aligned_cols=35 Identities=11% Similarity=0.206 Sum_probs=21.0
Q ss_pred ccccCccccCCCceecCCCCcccHhhHHHHHhc--C--CCCCCCcccccC
Q 036338 14 FRCPISLDVMKSPVSLCTGVTYDRASIQRWLDS--G--NNTCPATMQVLQ 59 (408)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~--~--~~~CP~~~~~l~ 59 (408)
|.|++|...|..+. -+...... + ...|+.|+..+.
T Consensus 2 ~~C~~C~~~f~~~~-----------~l~~H~~~h~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 2 YICEECGIRXKKPS-----------MLKKHIRTHTDVRPYHCTYCNFSFK 40 (57)
T ss_dssp CBCTTTCCBCSSHH-----------HHHHHHHHTSSCCCEECSSSSCEES
T ss_pred CcCCCCcCcCCCHH-----------HHHHHHHhcCCCCCccCCCCCchhc
Confidence 56888877776653 23333221 2 346999988764
No 284
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=32.43 E-value=5.3e+02 Score=28.32 Aligned_cols=172 Identities=16% Similarity=0.130 Sum_probs=94.9
Q ss_pred Chh-HHHHHHHHHHHhhh-----ChhhhhhhhhcCChHHHHHHHhhcC------cchhhHHHHHHHHHHhcccccchHHH
Q 036338 113 NED-FSENLTKIVAFAKE-----SDENKTFLAKFDGLVVMLVEILSNV------NDVNMLKQVIRVLDLILNKIEDQQHL 180 (408)
Q Consensus 113 ~~~-~~~Al~~L~~la~~-----~~~~r~~i~~~~G~i~~Lv~lL~s~------~~~~~~e~A~~~L~~L~~~~~~~~~~ 180 (408)
+.. |..|+..|++.... +++.|..|.+. |+.++.+. ....+......++..++. .+-..
T Consensus 60 ~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~------ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~--~d~p~- 130 (1204)
T 3a6p_A 60 VAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNS------VMELIANGTLNILEEENHIKDALSRIVVEMIK--REWPQ- 130 (1204)
T ss_dssp CHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHH------HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHH--HHSTT-
T ss_pred CHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH------HHHHHHhhccccccccHHHHHHHHHHHHHHHH--HhCcc-
Confidence 445 77788888877644 34556666654 45554432 122233555556666664 22110
Q ss_pred HHHHhccCcccHHHHHHHHhcCCChHHHHHHHHHHHHhhcC---cc----hh-----hHHhh-hcChHHHHHHhcccC--
Q 036338 181 MNLILKRDQDCLNSLLLVLKQQESVDSRIESLRLLEFIAGD---AD----SK-----VKIAE-RDGLLAETVKSLSLD-- 245 (408)
Q Consensus 181 ~~~i~~~~~g~i~~Lv~lL~~~~~~~~~~~Aa~~L~~La~~---~~----~~-----~~i~~-~~g~i~~Lv~lL~~~-- 245 (408)
.=...++.|+.++.+ +...++.+..+|..|+.+ .+ .+ ..+.. ...++..+..+|.+.
T Consensus 131 ------~Wp~ll~~L~~~~~~--~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~ 202 (1204)
T 3a6p_A 131 ------HWPDMLIELDTLSKQ--GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVN 202 (1204)
T ss_dssp ------TCTTHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred ------cchHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 024678888888866 456678888888888643 11 11 11211 012344444455321
Q ss_pred ----------------CCHHHHHHHHHHHHHhccCcchHHHHHhc--CcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCC
Q 036338 246 ----------------SDRRLIEASLSCLITISSSKRAKTKLINH--KLITELGKLITDGHNGNGSGNGNGNGNGNGSGN 307 (408)
Q Consensus 246 ----------------~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~--G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~ 307 (408)
.+..+...++.++.+....-.. ..+++. ..++.+..++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~l~---------------------- 259 (1204)
T 3a6p_A 203 KYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM-SHITAENCKLLEILCLLLN---------------------- 259 (1204)
T ss_dssp HHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH-HHHHTTTSHHHHHHHHGGG----------------------
T ss_pred HHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH-HHHHhccchHHHHHHHHcC----------------------
Confidence 1234666777777766554322 223333 26666666554
Q ss_pred CCcchHHHHHHHHHHHhC
Q 036338 308 GTVLITEKALRLVEILST 325 (408)
Q Consensus 308 ~~~~~~~~a~~~L~~L~~ 325 (408)
++.++..|+.+|..+..
T Consensus 260 -~~~lr~~A~ecL~~i~s 276 (1204)
T 3a6p_A 260 -EQELQLGAAECLLIAVS 276 (1204)
T ss_dssp -CTTTHHHHHHHHHHHHT
T ss_pred -CHHHHHHHHHHHHHHHh
Confidence 34678888888888875
No 285
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.21 E-value=39 Score=23.00 Aligned_cols=30 Identities=10% Similarity=0.190 Sum_probs=13.3
Q ss_pred ccccCccccCCC-ceecCCCCcccHhhHHHH
Q 036338 14 FRCPISLDVMKS-PVSLCTGVTYDRASIQRW 43 (408)
Q Consensus 14 ~~Cpi~~~~~~d-Pv~~~cgh~f~r~cI~~~ 43 (408)
|.|..|...+.+ .....-|..||+.|-.+.
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (69)
T 2cur_A 32 FVCVTCSKKLAGQRFTAVEDQYYCVDCYKNF 62 (69)
T ss_dssp TBCTTTCCBCTTSCEEECSSCEEEHHHHHHH
T ss_pred CEECCCCCCCCCCccEeECCEEECHHHhHHH
Confidence 445555544433 223334445555544443
No 286
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.17 E-value=47 Score=23.38 Aligned_cols=43 Identities=7% Similarity=-0.015 Sum_probs=31.3
Q ss_pred CCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 9 TVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
..+....|+-|.+...+.++..-|..|-..| +.|-.|+.+|..
T Consensus 11 ~~~~~~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~ 53 (79)
T 1x62_A 11 NAQKLPMCDKCGTGIVGVFVKLRDRHRHPEC---------YVCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCCCCSSSCCCCCSSCEECSSCEECTTT---------TSCSSSCCCHHH
T ss_pred CCCCCCccccCCCCccCcEEEECcceeCcCc---------CeeCCCCCCCCC
Confidence 3455678999999888877766777775555 468888877643
No 287
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.91 E-value=13 Score=25.16 Aligned_cols=35 Identities=9% Similarity=0.051 Sum_probs=25.2
Q ss_pred CcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 12 SFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
..|.|++|+..|...-.+.- .....|+.|+..+..
T Consensus 17 ~~~~C~~C~k~f~~~~~l~~--------------~~~~~C~~C~~~f~~ 51 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRSTLSR--------------RKTPMCEKCRKDSCQ 51 (73)
T ss_dssp SEEECSSSCCEEECCCCCCC--------------SSSCCCHHHHHTCSC
T ss_pred CCeeCCcccchhCCHHHhCc--------------CCCCCCCCCChhhcC
Confidence 45889999998887665432 345679999887755
No 288
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=31.66 E-value=2e+02 Score=23.16 Aligned_cols=72 Identities=17% Similarity=0.112 Sum_probs=48.7
Q ss_pred hHHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHHHhc------CCChHHHHHHHHHHH
Q 036338 143 LVVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLVLKQ------QESVDSRIESLRLLE 216 (408)
Q Consensus 143 ~i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~lL~~------~~~~~~~~~Aa~~L~ 216 (408)
++..|.+-|.+.+ +.++-.|+.+|-.+.. +....++..|. +..++..|++++.. . +..+|.....+|.
T Consensus 49 a~ral~krl~~~n-~~v~l~AL~LLe~cvk--NCG~~fh~eia--s~~Fl~eL~kl~~~k~~~~~~-~~~Vk~kil~li~ 122 (149)
T 3g2s_A 49 ATRLLAHKIQSPQ-EWEAIQALTVLETCMK--SCGKRFHDEVG--KFRFLNELIKVVSPKYLGSRT-SEKVKNKILELLY 122 (149)
T ss_dssp HHHHHHHHHTCSS-HHHHHHHHHHHHHHHH--HCCHHHHHHHT--SHHHHHHHHHHHCTTTTGGGS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHHHHH--hcCHHHHHHHh--hHHHHHHHHHHHcccccCCCC-CHHHHHHHHHHHH
Confidence 3444666666554 3344677777766665 33334466676 77889999999862 4 7889999999988
Q ss_pred Hhhc
Q 036338 217 FIAG 220 (408)
Q Consensus 217 ~La~ 220 (408)
.-+.
T Consensus 123 ~W~~ 126 (149)
T 3g2s_A 123 SWTV 126 (149)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 289
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=31.13 E-value=14 Score=25.28 Aligned_cols=37 Identities=5% Similarity=0.082 Sum_probs=22.5
Q ss_pred CcccccCccccCCCceecCCCCcccHhhHHHHHh----cCCCCCCCcccccC
Q 036338 12 SFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLD----SGNNTCPATMQVLQ 59 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~----~~~~~CP~~~~~l~ 59 (408)
..|.|++|...|...-. +..... ...+.|+.|++.+.
T Consensus 13 k~~~C~~C~k~f~~~~~-----------L~~H~~~h~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 13 KPYGCVECGKAFSRSSI-----------LVQHQRVHTGEKPYKCLECGKAFS 53 (72)
T ss_dssp CCEECSSSCCEESSHHH-----------HHHHHHGGGCSCCEECSSSCCEES
T ss_pred CCccCCCCCCccCCHHH-----------HHHHHHhcCCCCCeECCCCCcccC
Confidence 45889988877765532 222222 12356999987664
No 290
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.95 E-value=27 Score=23.96 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=28.6
Q ss_pred CCcccccCccccCCCc-eecCCCCcccHhhHHHHHhc
Q 036338 11 PSFFRCPISLDVMKSP-VSLCTGVTYDRASIQRWLDS 46 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dP-v~~~cgh~f~r~cI~~~~~~ 46 (408)
++-|.|..|...+.+- ....-|.-||+.|-.+.+..
T Consensus 29 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~~~~ 65 (70)
T 2d8x_A 29 PECFRCDLCQEVLADIGFVKNAGRHLCRPCHNREKAS 65 (70)
T ss_dssp TTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHHHCC
T ss_pred ccCCEeCCCCCcCCCCccEeECCeEECHHHhhhhcCC
Confidence 4559999999999884 44468999999998877653
No 291
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=30.75 E-value=32 Score=26.82 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=29.2
Q ss_pred CCcccccCccccCC--CceecCCCCcccHhhHHHHHhc
Q 036338 11 PSFFRCPISLDVMK--SPVSLCTGVTYDRASIQRWLDS 46 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~--dPv~~~cgh~f~r~cI~~~~~~ 46 (408)
++-|.|..|...|. +.....-|.-||+.|..+.+..
T Consensus 34 ~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~ 71 (123)
T 2l3k_A 34 LECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKI 71 (123)
T ss_dssp TTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHH
T ss_pred cccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhcc
Confidence 45589999999994 4677778999999999888753
No 292
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=30.09 E-value=26 Score=23.88 Aligned_cols=39 Identities=5% Similarity=0.108 Sum_probs=24.2
Q ss_pred CCcccccCccccCCCceecCCCCcccHhhHHHHHh--c--CCCCCCCcccccCC
Q 036338 11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLD--S--GNNTCPATMQVLQS 60 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~--~--~~~~CP~~~~~l~~ 60 (408)
...|.|++|...|...-. +..... . ....|+.|+..+..
T Consensus 15 ~~~~~C~~C~k~f~~~~~-----------l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGN-----------LASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCSBCCTTSSCCBSCHHH-----------HHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCCeECCCCCceeCCHHH-----------HHHHHHHcCCCCCEECCCCCchhCC
Confidence 355889998887776532 233222 1 23569999887643
No 293
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=29.99 E-value=15 Score=31.50 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=14.8
Q ss_pred CCCCcccHhhHHHHHhcCCCCCCCcccc
Q 036338 30 CTGVTYDRASIQRWLDSGNNTCPATMQV 57 (408)
Q Consensus 30 ~cgh~f~r~cI~~~~~~~~~~CP~~~~~ 57 (408)
.|||+|+-. .-...||.|+.+
T Consensus 160 ~CG~~~~g~-------~~p~~CP~C~~~ 180 (191)
T 1lko_A 160 NCGYVHEGT-------GAPELCPACAHP 180 (191)
T ss_dssp TTCCEEEEE-------ECCSBCTTTCCB
T ss_pred CCCCEeeCC-------CCCCCCCCCcCC
Confidence 499999732 123479999875
No 294
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=29.77 E-value=6.9 Score=25.21 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=16.4
Q ss_pred cCCCCcccHhhHHHHHhcCCCCCCCcccc
Q 036338 29 LCTGVTYDRASIQRWLDSGNNTCPATMQV 57 (408)
Q Consensus 29 ~~cgh~f~r~cI~~~~~~~~~~CP~~~~~ 57 (408)
+.||++|..+-++.. ..-.||.|+-.
T Consensus 7 ~rCg~~fs~~el~~l---P~IrCpyCGyr 32 (48)
T 4ayb_P 7 GKCWKTFTDEQLKVL---PGVRCPYCGYK 32 (48)
T ss_dssp CCTTTTCCCCCSCCC---SSSCCTTTCCS
T ss_pred eccCCCccHHHHhhC---CCcccCccCcE
Confidence 468888877643211 12469999854
No 295
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=29.70 E-value=2.6e+02 Score=26.99 Aligned_cols=105 Identities=10% Similarity=0.070 Sum_probs=65.5
Q ss_pred ChHHHHHHHHHHHHhhcCcch-hhHHhhhcChHHHHHHhcccC-------CCHHHHHHHHHHHHHhccCcch-HHHHHhc
Q 036338 204 SVDSRIESLRLLEFIAGDADS-KVKIAERDGLLAETVKSLSLD-------SDRRLIEASLSCLITISSSKRA-KTKLINH 274 (408)
Q Consensus 204 ~~~~~~~Aa~~L~~La~~~~~-~~~i~~~~g~i~~Lv~lL~~~-------~~~~~~~~A~~aL~~Ls~~~~n-~~~~~~~ 274 (408)
+...+.-+.+++.||-.++.. +..+.. ......+++.+... .+..++-+++..++|++..... +. +.
T Consensus 275 ~~an~MltlR~laNlF~~~~~g~~ll~~-~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~ 350 (425)
T 3pst_A 275 NITLTMLTVRILVNCFNNENWGVKLLES-NQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DL 350 (425)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTS-HHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CT
T ss_pred ChhHHHHHHHHHHHhcCCcchHHHHhhC-chhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hH
Confidence 778888899999999888874 444433 33456777766321 1346888889999999874211 10 12
Q ss_pred CcHHHHHHHhccCCCCCCCCCCCCCCCCCC-CCCCCcchHHHHHHHHHHHhC
Q 036338 275 KLITELGKLITDGHNGNGSGNGNGNGNGNG-SGNGTVLITEKALRLVEILST 325 (408)
Q Consensus 275 G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~L~~L~~ 325 (408)
..++.+++.+.... +.. ....+.+..-.++.+|.+|..
T Consensus 351 el~~~l~e~l~~~~-------------g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 351 ELLPIVADAINTKY-------------GPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp THHHHHHHHHHHTT-------------TTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc-------------cccccccCCHHHHHHHHHHHHHHHh
Confidence 34456666665200 000 001377888899999999985
No 296
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.66 E-value=25 Score=25.07 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=29.4
Q ss_pred CCCCCCcccccCccccCC-CceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 7 YITVPSFFRCPISLDVMK-SPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 7 ~~~~~~~~~Cpi~~~~~~-dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
+..+.....|+-|.+... ..++..-|+.|-..| +.|-.|+.+|..
T Consensus 9 ~~~~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~C---------F~C~~C~~~L~~ 54 (80)
T 2dj7_A 9 PIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSC---------FKCQTCSVILTG 54 (80)
T ss_dssp CCCCSSCSCCTTTCCCCSSSCCEEETTEEECTTT---------CBCSSSCCBCSS
T ss_pred CcCCCCCCCCcCcCCeeCCCeEEEECCccccccc---------CCcCcCCCCcCC
Confidence 334455667988888775 344445677776666 457788777753
No 297
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=29.53 E-value=46 Score=29.52 Aligned_cols=49 Identities=16% Similarity=0.212 Sum_probs=29.0
Q ss_pred CCCCcccHhhHHHHHhcC-CCCCCCcccccCC-----CCCcccHHHHHHHHHHHHh
Q 036338 30 CTGVTYDRASIQRWLDSG-NNTCPATMQVLQS-----KEFVPNRTLQRLIQIWSDS 79 (408)
Q Consensus 30 ~cgh~f~r~cI~~~~~~~-~~~CP~~~~~l~~-----~~l~~n~~l~~~I~~~~~~ 79 (408)
.||+.|...-+.+.+..+ .+.||.|+-.+.+ .+..|...+.+. .+|.++
T Consensus 126 ~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP~vv~FgE~lp~~~~~~a-~~~~~~ 180 (246)
T 1yc5_A 126 RCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREA-IGLSSR 180 (246)
T ss_dssp TTCCEEEHHHHHHHTTTCSSCBCTTTCCBEEEEECCBTSBCCHHHHHHH-HHHHHH
T ss_pred CCCCCCcHHHHHHHhccCCCCCCCCCCCccCcceEECCCCCCHHHHHHH-HHHHhc
Confidence 688888877665554432 4679999876544 223354445443 344443
No 298
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=29.42 E-value=22 Score=23.92 Aligned_cols=37 Identities=16% Similarity=0.376 Sum_probs=22.4
Q ss_pred cccccCccccCCCceecCCCCcccHhhHHHHH--hcC--CCCCCCcccccCC
Q 036338 13 FFRCPISLDVMKSPVSLCTGVTYDRASIQRWL--DSG--NNTCPATMQVLQS 60 (408)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~--~~~--~~~CP~~~~~l~~ 60 (408)
-|.|++|+..|..+- .+.... -.+ .+.|+.|++.|..
T Consensus 4 py~C~~C~k~F~~~~-----------~L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 4 PFFCNFCGKTYRDAS-----------GLSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CEECTTTCCEESSHH-----------HHHHHHHHHHTCCCEECTTTCCEESS
T ss_pred CccCCCCCCEeCCHH-----------HHHHHHHHhCCCcCeECCCCCCCcCC
Confidence 367887777776653 233322 223 3569999987643
No 299
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.31 E-value=20 Score=25.55 Aligned_cols=40 Identities=10% Similarity=0.240 Sum_probs=28.7
Q ss_pred ccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCC
Q 036338 14 FRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKE 62 (408)
Q Consensus 14 ~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~ 62 (408)
..|+-|.+...+.++..-|.+|-..| ++|-.|+.+|....
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~~~~ 55 (79)
T 2cor_A 16 YICQKCHAIIDEQPLIFKNDPYHPDH---------FNCANCGKELTADA 55 (79)
T ss_dssp CBCTTTCCBCCSCCCCCSSSCCCTTT---------SBCSSSCCBCCTTC
T ss_pred CCCccCCCEecceEEEECcceeCCCC---------CEeCCCCCccCCCC
Confidence 46888888877777666777777666 45777877776543
No 300
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.81 E-value=27 Score=25.35 Aligned_cols=43 Identities=12% Similarity=0.027 Sum_probs=32.2
Q ss_pred CCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCC
Q 036338 11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKE 62 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~ 62 (408)
+....|.-|.+...+.++..-|..|-..| +.|-.|+.+|....
T Consensus 23 ~~~~~C~~C~~~I~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~~~ 65 (89)
T 1x64_A 23 QRMPLCDKCGSGIVGAVVKARDKYRHPEC---------FVCADCNLNLKQKG 65 (89)
T ss_dssp CSCCBCTTTCCBCCSCCEESSSCEECTTT---------CCCSSSCCCTTTSC
T ss_pred CcCCCcccCCCEecccEEEECCceECccC---------CEecCCCCCCCCCC
Confidence 44467999999988877766777776665 56888988886643
No 301
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.37 E-value=34 Score=24.84 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=27.9
Q ss_pred CCcccccCccccCCC-ceecCCCCcccHhhHHHHHh
Q 036338 11 PSFFRCPISLDVMKS-PVSLCTGVTYDRASIQRWLD 45 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~d-Pv~~~cgh~f~r~cI~~~~~ 45 (408)
++-|.|..|...|.+ .....-|.-||+.|..+.+.
T Consensus 49 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~f~ 84 (90)
T 2dar_A 49 PEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKFFA 84 (90)
T ss_dssp TTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHHTS
T ss_pred ccCCccCCCCCCCCCCEeEeECCEEECHHHHHHHcC
Confidence 455999999999886 45567899999999877665
No 302
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=28.29 E-value=38 Score=24.91 Aligned_cols=12 Identities=25% Similarity=0.232 Sum_probs=9.2
Q ss_pred CCCCCCcccccC
Q 036338 48 NNTCPATMQVLQ 59 (408)
Q Consensus 48 ~~~CP~~~~~l~ 59 (408)
.+.|+.|++.|.
T Consensus 62 ~~~C~~Cgk~F~ 73 (96)
T 2ctd_A 62 MFTCHHCGKQLR 73 (96)
T ss_dssp CCCCSSSCCCCS
T ss_pred CeECCCCCCeeC
Confidence 467999987764
No 303
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=28.27 E-value=5.8 Score=27.89 Aligned_cols=40 Identities=10% Similarity=0.159 Sum_probs=23.0
Q ss_pred CCCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCcc
Q 036338 9 TVPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVP 65 (408)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~ 65 (408)
.+-+-+.||+|+.-+. |.. .++.-.||.|+..+.-.+=+|
T Consensus 6 ~LLeiL~CP~ck~~L~----------~~~-------~~g~LvC~~c~~~YPI~dGIP 45 (67)
T 2jny_A 6 QLLEVLACPKDKGPLR----------YLE-------SEQLLVNERLNLAYRIDDGIP 45 (67)
T ss_dssp GGTCCCBCTTTCCBCE----------EET-------TTTEEEETTTTEEEEEETTEE
T ss_pred HHHHHhCCCCCCCcCe----------EeC-------CCCEEEcCCCCccccCCCCEe
Confidence 4556688999998433 211 123446888876654444334
No 304
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=27.97 E-value=5.3 Score=28.17 Aligned_cols=40 Identities=15% Similarity=0.391 Sum_probs=24.3
Q ss_pred CCCcccccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCCCccc
Q 036338 10 VPSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKEFVPN 66 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~l~~n 66 (408)
+-+-+.||+|+.-+. |... .+.-.||.|+..+.-.+-+|+
T Consensus 5 LL~iL~CP~ck~~L~----------~~~~-------~~~LiC~~cg~~YPI~dGIPv 44 (68)
T 2hf1_A 5 FLEILVCPLCKGPLV----------FDKS-------KDELICKGDRLAFPIKDGIPM 44 (68)
T ss_dssp CEEECBCTTTCCBCE----------EETT-------TTEEEETTTTEEEEEETTEEC
T ss_pred HhhheECCCCCCcCe----------EeCC-------CCEEEcCCCCcEecCCCCeee
Confidence 445678999996433 2221 234569999877655555554
No 305
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=27.63 E-value=25 Score=27.82 Aligned_cols=29 Identities=10% Similarity=0.045 Sum_probs=20.5
Q ss_pred ccccCccccCCCcee----cCCCCcccHhhHHH
Q 036338 14 FRCPISLDVMKSPVS----LCTGVTYDRASIQR 42 (408)
Q Consensus 14 ~~Cpi~~~~~~dPv~----~~cgh~f~r~cI~~ 42 (408)
..|++|...|.--.- =.||+.||..|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 479999998873211 14999999998543
No 306
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=27.52 E-value=37 Score=22.73 Aligned_cols=17 Identities=12% Similarity=0.290 Sum_probs=12.2
Q ss_pred CCCCCCcccccCccccC
Q 036338 7 YITVPSFFRCPISLDVM 23 (408)
Q Consensus 7 ~~~~~~~~~Cpi~~~~~ 23 (408)
...+-+-+.||.|+.-+
T Consensus 4 d~~lL~iL~CP~c~~~L 20 (56)
T 2kpi_A 4 EAGLLEILACPACHAPL 20 (56)
T ss_dssp CCSCTTSCCCSSSCSCE
T ss_pred CHHHHhheeCCCCCCcc
Confidence 34556778999999843
No 307
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.15 E-value=60 Score=24.74 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=29.1
Q ss_pred CCcccccCccccCCC---ceecCCCCcccHhhHHHHHhc
Q 036338 11 PSFFRCPISLDVMKS---PVSLCTGVTYDRASIQRWLDS 46 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~d---Pv~~~cgh~f~r~cI~~~~~~ 46 (408)
++-|.|..|...+.+ +....-|.-||+.|-.+-+..
T Consensus 28 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 28 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLGGS 66 (114)
T ss_dssp TTTCCCSSSCSCCCCSSSCCCCBTTBCCCHHHHHHHHTS
T ss_pred HhcCcccccCCchhcCCCeeEEECCeeechHHHHHHhCc
Confidence 455899999999975 666778999999998887764
No 308
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.86 E-value=84 Score=22.57 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=26.8
Q ss_pred CCcccccCccccCCC-ceecCCCCcccHhhHHHHHh
Q 036338 11 PSFFRCPISLDVMKS-PVSLCTGVTYDRASIQRWLD 45 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~d-Pv~~~cgh~f~r~cI~~~~~ 45 (408)
++-|.|..|...|.+ .....-|.-||+.|..+.+.
T Consensus 49 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~ 84 (89)
T 1x64_A 49 PECFVCADCNLNLKQKGYFFVEGELYCETHARARTS 84 (89)
T ss_dssp TTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHHSS
T ss_pred ccCCEecCCCCCCCCCCeEeECCEEECHHHHHHHhC
Confidence 345899999999886 55556888999998776654
No 309
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.83 E-value=46 Score=22.73 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=24.7
Q ss_pred cccCccccCC--CceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCC
Q 036338 15 RCPISLDVMK--SPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKE 62 (408)
Q Consensus 15 ~Cpi~~~~~~--dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~ 62 (408)
.|+-|++... +.++..-|++|-..| +.|-.|+.+|....
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~~~ 47 (72)
T 1wyh_A 7 GCSACGETVMPGSRKLEYGGQTWHEHC---------FLCSGCEQPLGSRS 47 (72)
T ss_dssp BCSSSCCBCCSSSCEECSTTCCEETTT---------CBCTTTCCBTTTSC
T ss_pred CCccCCCccccCccEEEECccccCccc---------CeECCCCCcCCCCc
Confidence 5777777777 456655666665444 45777777765543
No 310
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=26.46 E-value=58 Score=29.02 Aligned_cols=49 Identities=20% Similarity=0.189 Sum_probs=28.5
Q ss_pred CCCCcccHhhHHHHHhcC-CCCCCCccc-ccCC-----CCCcccHHHHHHHHHHHHh
Q 036338 30 CTGVTYDRASIQRWLDSG-NNTCPATMQ-VLQS-----KEFVPNRTLQRLIQIWSDS 79 (408)
Q Consensus 30 ~cgh~f~r~cI~~~~~~~-~~~CP~~~~-~l~~-----~~l~~n~~l~~~I~~~~~~ 79 (408)
.||+.|...-+.+.+..+ .+.||.|+- .+.+ .+..|...+.+. .+|.++
T Consensus 128 ~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~~lrP~Vv~FgE~lp~~~~~~a-~~~~~~ 183 (253)
T 1ma3_A 128 DCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEA-IEEAKH 183 (253)
T ss_dssp TTCCEEEGGGTHHHHHTTCCCCCTTTCCSCEEEEECCBTSBCCHHHHHHH-HHHHHH
T ss_pred CCCCcCcHHHHHHHhccCCCCCCCCCCCccccceEEEeCCCCCHHHHHHH-HHHHHh
Confidence 577788776655544433 468999997 6544 223354445443 344443
No 311
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=25.93 E-value=35 Score=20.42 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=9.2
Q ss_pred cccccCccccCCCc
Q 036338 13 FFRCPISLDVMKSP 26 (408)
Q Consensus 13 ~~~Cpi~~~~~~dP 26 (408)
.|.|++|...|...
T Consensus 10 ~~~C~~C~k~f~~~ 23 (45)
T 2epq_A 10 PYSCPVCGLRFKRK 23 (45)
T ss_dssp SSEETTTTEECSCH
T ss_pred CCcCCCCCcccCCH
Confidence 46788777666543
No 312
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.33 E-value=27 Score=25.62 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=22.4
Q ss_pred CcccccCccccCC-CceecCCCCcccHhhHHHHHh-cCCCCCCCcccccC
Q 036338 12 SFFRCPISLDVMK-SPVSLCTGVTYDRASIQRWLD-SGNNTCPATMQVLQ 59 (408)
Q Consensus 12 ~~~~Cpi~~~~~~-dPv~~~cgh~f~r~cI~~~~~-~~~~~CP~~~~~l~ 59 (408)
..|.|++|...|. ....+ -+. +...-. ...+.|+.|++.|.
T Consensus 23 ~~~~C~~C~k~f~~~~~~L------~~H-~~~h~~~~~~~~C~~C~k~F~ 65 (98)
T 2gqj_A 23 GEAVCPTCNVVTRKTLVGL------KKH-MEVCQKLQDALKCQHCRKQFK 65 (98)
T ss_dssp SCCCCTTTCCCCSSCSHHH------HHH-HHHHHHHHHHHSCSSSCCCCS
T ss_pred CCcCCCCCCCChhhhHHHH------HHH-HHHHcCCCCCEECCCCCCccC
Confidence 4578998888776 54322 111 011111 12357999987664
No 313
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=25.14 E-value=25 Score=36.94 Aligned_cols=49 Identities=16% Similarity=0.206 Sum_probs=35.7
Q ss_pred CCCcccccCccccCCC--------ceec--CCCCc--------------------ccHhhHHHHHhcC-------CCCCC
Q 036338 10 VPSFFRCPISLDVMKS--------PVSL--CTGVT--------------------YDRASIQRWLDSG-------NNTCP 52 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~d--------Pv~~--~cgh~--------------------f~r~cI~~~~~~~-------~~~CP 52 (408)
+|+--+||-|++.|.| |.|. .||=. .|..|-.+|-.-. ...||
T Consensus 103 ~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~ 182 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACP 182 (772)
T ss_dssp CCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCc
Confidence 4777899999999988 5554 37753 4889999987532 13599
Q ss_pred Cccccc
Q 036338 53 ATMQVL 58 (408)
Q Consensus 53 ~~~~~l 58 (408)
.|+=.+
T Consensus 183 ~CGP~l 188 (772)
T 4g9i_A 183 VCGPSY 188 (772)
T ss_dssp TTSCCE
T ss_pred cCCceE
Confidence 998543
No 314
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=24.26 E-value=21 Score=37.41 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=35.7
Q ss_pred CCCcccccCccccCCC--------ceec--CCCC--------------------cccHhhHHHHHhcC-------CCCCC
Q 036338 10 VPSFFRCPISLDVMKS--------PVSL--CTGV--------------------TYDRASIQRWLDSG-------NNTCP 52 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~d--------Pv~~--~cgh--------------------~f~r~cI~~~~~~~-------~~~CP 52 (408)
+|+--+||-|++.|.| |.|. .||= ..|..|-.+|-.-. ...||
T Consensus 108 ~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~ 187 (761)
T 3vth_A 108 SPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACF 187 (761)
T ss_dssp CCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCT
T ss_pred CCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCC
Confidence 4677899999999988 5554 3773 34899999986532 23599
Q ss_pred Cccccc
Q 036338 53 ATMQVL 58 (408)
Q Consensus 53 ~~~~~l 58 (408)
.|+=.+
T Consensus 188 ~CGP~l 193 (761)
T 3vth_A 188 DCGPSL 193 (761)
T ss_dssp TTSCCE
T ss_pred ccCCee
Confidence 998544
No 315
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=23.81 E-value=29 Score=17.98 Aligned_cols=12 Identities=17% Similarity=0.520 Sum_probs=6.0
Q ss_pred ccccCccccCCC
Q 036338 14 FRCPISLDVMKS 25 (408)
Q Consensus 14 ~~Cpi~~~~~~d 25 (408)
|.|++|...|..
T Consensus 3 ~~C~~C~~~f~~ 14 (29)
T 1ard_A 3 FVCEVCTRAFAR 14 (29)
T ss_dssp CBCTTTCCBCSS
T ss_pred eECCCCCcccCC
Confidence 445555554443
No 316
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=23.64 E-value=52 Score=27.79 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=21.5
Q ss_pred ccccCccccCCC-ceecCCCCcccHhhHHHHHhcCCCCCCCcccc
Q 036338 14 FRCPISLDVMKS-PVSLCTGVTYDRASIQRWLDSGNNTCPATMQV 57 (408)
Q Consensus 14 ~~Cpi~~~~~~d-Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~ 57 (408)
|.|..|...|.+ .....-|+.||+.|..+.+. ..|..|++.
T Consensus 143 F~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~f~---~kc~~C~~~ 184 (192)
T 1b8t_A 143 FRCAKCGKSLESTTLADKDGEIYCKGCYAKNFG---PKGFGFGQG 184 (192)
T ss_dssp CBCTTTCCBCCSSSEEEETTEEEEHHHHHHHTC---CCCCCCCCC
T ss_pred CCccccCCCCCCCcccccCCEEeCHHHHHHhcC---CcCCCCCCc
Confidence 556666665543 33444566666666555443 235555543
No 317
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=23.49 E-value=37 Score=26.76 Aligned_cols=46 Identities=11% Similarity=0.170 Sum_probs=26.4
Q ss_pred cccccCccccCCC---------------ceec-CCCCcccHhh-HHHHHh--cC--CCCCCCccccc
Q 036338 13 FFRCPISLDVMKS---------------PVSL-CTGVTYDRAS-IQRWLD--SG--NNTCPATMQVL 58 (408)
Q Consensus 13 ~~~Cpi~~~~~~d---------------Pv~~-~cgh~f~r~c-I~~~~~--~~--~~~CP~~~~~l 58 (408)
.|.|++|+..|.. |..- .||.+|-... +..... .+ ...|+.|+..+
T Consensus 22 ~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F 88 (133)
T 2lt7_A 22 YYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSF 88 (133)
T ss_dssp EEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEE
T ss_pred CeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCc
Confidence 4789999988876 4333 2666665443 222221 12 24577777655
No 318
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=23.43 E-value=27 Score=17.80 Aligned_cols=12 Identities=8% Similarity=0.462 Sum_probs=5.4
Q ss_pred ccccCccccCCC
Q 036338 14 FRCPISLDVMKS 25 (408)
Q Consensus 14 ~~Cpi~~~~~~d 25 (408)
|.|++|...|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 345554444433
No 319
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.37 E-value=1.2e+02 Score=21.83 Aligned_cols=45 Identities=11% Similarity=0.100 Sum_probs=28.5
Q ss_pred CCCCcccccCccccCCC-ceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCC
Q 036338 9 TVPSFFRCPISLDVMKS-PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKE 62 (408)
Q Consensus 9 ~~~~~~~Cpi~~~~~~d-Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~ 62 (408)
..+..-.|+-|.+...+ -.+..-|..|-..| +.|-.|+.+|....
T Consensus 11 ~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~C---------F~C~~C~~~L~~~~ 56 (91)
T 2d8y_A 11 QAPARETCVECQKTVYPMERLLANQQVFHISC---------FRCSYCNNKLSLGT 56 (91)
T ss_dssp CSSSSCBCTTTCCBCCTTSEEECSSSEEETTT---------CBCTTTCCBCCTTT
T ss_pred CCCCCCcCccCCCccCCceeEEECCCEECCCC---------CeeCCCCCCCCCCC
Confidence 34455679888888764 33445666665544 45777877776543
No 320
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.32 E-value=91 Score=21.87 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=25.7
Q ss_pred CCcccccCccccCCCceecCCCCcccHhhHHHH
Q 036338 11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRW 43 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~ 43 (408)
++-|.|..|...|.+--...-|..||+.|..+.
T Consensus 39 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~cy~~~ 71 (79)
T 2cor_A 39 PDHFNCANCGKELTADARELKGELYCLPCHDKM 71 (79)
T ss_dssp TTTSBCSSSCCBCCTTCEEETTEEECHHHHHTT
T ss_pred CCCCEeCCCCCccCCCCEeECCEEeCHHHHHHh
Confidence 456999999999887544568899999986543
No 321
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=23.23 E-value=2.7e+02 Score=26.18 Aligned_cols=144 Identities=11% Similarity=0.098 Sum_probs=80.7
Q ss_pred HHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHHHHHH-HhcCCChHHHHHHHHHHHHhhcCcch-hh
Q 036338 149 EILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNSLLLV-LKQQESVDSRIESLRLLEFIAGDADS-KV 226 (408)
Q Consensus 149 ~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~Lv~l-L~~~~~~~~~~~Aa~~L~~La~~~~~-~~ 226 (408)
.++.+.. .+ -.++.+|+.+.. +.. ..+.+..++.. +.+. ....+.-+.+++.|+-.++.. +.
T Consensus 172 ~i~~~Wp-~~--FP~LDLLRl~v~--~~~----------~~~~l~~li~~~~~~~-~~~n~MltlR~laNlF~~~~~g~~ 235 (362)
T 3l3f_X 172 TIRSNWE-IK--TPAYDIVRLIVK--KLP----------YSSDIKDYIEEGLGNK-NITLTMLTVRILVNCFNNENWGVK 235 (362)
T ss_dssp HHHHHCS-CC--HHHHHHHHHHGG--GCS----------CGGGGHHHHHHHTTCS-SHHHHHHHHHHHHHHTTCTTTHHH
T ss_pred HHHhhCC-cc--chHHHHHHHHhc--CCC----------hHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHhccCcchHHH
Confidence 5555444 22 557777776654 211 12233333322 2344 778888999999999888874 44
Q ss_pred HHhhhcChHHHHHHhccc----C---CCHHHHHHHHHHHHHhccCcch-HHHHHhcCcHHHHHHHhccCCCCCCCCCCCC
Q 036338 227 KIAERDGLLAETVKSLSL----D---SDRRLIEASLSCLITISSSKRA-KTKLINHKLITELGKLITDGHNGNGSGNGNG 298 (408)
Q Consensus 227 ~i~~~~g~i~~Lv~lL~~----~---~~~~~~~~A~~aL~~Ls~~~~n-~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~ 298 (408)
.+.. ......+++.+.. . .+..++-+++..++|++..... +. +...++.+++.+....
T Consensus 236 ll~~-~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el~~~l~~~l~~~~---------- 301 (362)
T 3l3f_X 236 LLES-NQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKY---------- 301 (362)
T ss_dssp HHTS-HHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTHHHHHHHHHHHTT----------
T ss_pred HHhc-chhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhc----------
Confidence 4433 2234555555521 1 1346888889999999874211 10 1234456666665210
Q ss_pred CCCCCCC-CCCCcchHHHHHHHHHHHhC
Q 036338 299 NGNGNGS-GNGTVLITEKALRLVEILST 325 (408)
Q Consensus 299 ~~~~~~~-~~~~~~~~~~a~~~L~~L~~ 325 (408)
+... ...+.+..-.++.+|.+|..
T Consensus 302 ---g~~E~~~~d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 302 ---GPLEEYQECEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp ---TTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred ---cccccccCCHHHHHHHHHHHHHHHh
Confidence 0000 01277888999999999985
No 322
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=23.04 E-value=3e+02 Score=22.23 Aligned_cols=73 Identities=14% Similarity=0.160 Sum_probs=45.1
Q ss_pred HHHHHHHhhcCcchhhHHHHHHHHHHhcccccchHHHHHHHhccCcccHHH-HHHHHhc-C-CChHHHHHHHHHHHHhhc
Q 036338 144 VVMLVEILSNVNDVNMLKQVIRVLDLILNKIEDQQHLMNLILKRDQDCLNS-LLLVLKQ-Q-ESVDSRIESLRLLEFIAG 220 (408)
Q Consensus 144 i~~Lv~lL~s~~~~~~~e~A~~~L~~L~~~~~~~~~~~~~i~~~~~g~i~~-Lv~lL~~-~-~~~~~~~~Aa~~L~~La~ 220 (408)
+..|.+-|.+..+.+++-.|+.+|-.+.. +....++..|. +...+.. |++++.. . .+..+|..+..+|..-+.
T Consensus 55 ~ral~krl~~~~n~~v~l~AL~LLd~~vk--NcG~~fh~eva--~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 55 LRAVKKRIVGNKNFHEVMLALTVLETCVK--NCGHRFHVLVA--SQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HSCHHHHHHHT--SHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHH--HhCHHHHHHHh--hHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 44456666532223344667777666665 33234466676 7788887 7888842 2 145888888888887764
No 323
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=22.88 E-value=32 Score=17.66 Aligned_cols=9 Identities=22% Similarity=0.597 Sum_probs=3.8
Q ss_pred cccCccccC
Q 036338 15 RCPISLDVM 23 (408)
Q Consensus 15 ~Cpi~~~~~ 23 (408)
.|+.|...|
T Consensus 4 ~C~~C~~~f 12 (29)
T 2m0e_A 4 KCPHCDKKF 12 (29)
T ss_dssp CCSSCCCCC
T ss_pred cCCCCCccc
Confidence 344444433
No 324
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=22.87 E-value=29 Score=23.86 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=9.0
Q ss_pred ccccCccccCCCc
Q 036338 14 FRCPISLDVMKSP 26 (408)
Q Consensus 14 ~~Cpi~~~~~~dP 26 (408)
|.|++|...|.+.
T Consensus 2 ~~C~~C~~~f~~~ 14 (82)
T 2kmk_A 2 FDCKICGKSFKRS 14 (82)
T ss_dssp EECSSSCCEESSH
T ss_pred ccCCCCcccccCc
Confidence 5688877777653
No 325
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=22.67 E-value=32 Score=24.37 Aligned_cols=37 Identities=11% Similarity=0.239 Sum_probs=22.3
Q ss_pred cccccCccccCCCceecCCCCcccHhhHHHHH----hcCCCCCCCcccccCC
Q 036338 13 FFRCPISLDVMKSPVSLCTGVTYDRASIQRWL----DSGNNTCPATMQVLQS 60 (408)
Q Consensus 13 ~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~----~~~~~~CP~~~~~l~~ 60 (408)
.|.|++|...|..+-. +.... ......|+.|+..+..
T Consensus 3 ~~~C~~C~k~f~~~~~-----------L~~H~~~H~~~~~~~C~~C~k~f~~ 43 (88)
T 1llm_C 3 PFQCRICMRNFSRSDH-----------LTTHIRTHTGEKPFACDICGRKFAR 43 (88)
T ss_dssp CEECTTTCCEESCHHH-----------HHHHHHHHHCCCCEECTTTCCEESS
T ss_pred CCcCCCCCCccCCHHH-----------HHHHHHHcCCCCCccCCCCCCccCC
Confidence 4778888777766532 22222 2224569999877643
No 326
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=22.65 E-value=34 Score=17.76 Aligned_cols=12 Identities=8% Similarity=0.188 Sum_probs=5.4
Q ss_pred ccccCccccCCC
Q 036338 14 FRCPISLDVMKS 25 (408)
Q Consensus 14 ~~Cpi~~~~~~d 25 (408)
|.|++|...|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 345544444443
No 327
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.60 E-value=82 Score=23.32 Aligned_cols=48 Identities=17% Similarity=0.157 Sum_probs=26.1
Q ss_pred CCCCcccccCccccCCCceecC----CC-CcccHhhHHHHH-hcCCCCCCCcccc
Q 036338 9 TVPSFFRCPISLDVMKSPVSLC----TG-VTYDRASIQRWL-DSGNNTCPATMQV 57 (408)
Q Consensus 9 ~~~~~~~Cpi~~~~~~dPv~~~----cg-h~f~r~cI~~~~-~~~~~~CP~~~~~ 57 (408)
+..+...| +|++.....++.. |. .-|=..|+.--- ..+...||.|...
T Consensus 32 d~~e~~yC-iC~~~~~g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 32 DPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CSCCCBCS-TTCCBCCSCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCC
T ss_pred CCCCCcEE-ECCCCCCCCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCc
Confidence 33455778 9999876654432 22 224444543100 1145789999754
No 328
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.51 E-value=53 Score=22.38 Aligned_cols=39 Identities=5% Similarity=0.152 Sum_probs=23.6
Q ss_pred CCcccccCccccCCCceecCCCCcccHhhHHHHHhc----CCCCCCCcccccCC
Q 036338 11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDS----GNNTCPATMQVLQS 60 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~----~~~~CP~~~~~l~~ 60 (408)
...|.|++|...|.... .+...... ..+.|+.|+..+..
T Consensus 16 ~~~~~C~~C~~~f~~~~-----------~l~~H~~~h~~~~~~~C~~C~~~f~~ 58 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSS-----------DLSKHRRTHTGEKPYKCDECGKAFIQ 58 (77)
T ss_dssp SCSSBCSSSCCBCSCHH-----------HHHHHHTTTCCSCSEECSSSCCEESS
T ss_pred CCCEECCCCCcccCCHH-----------HHHHHHHHcCCCcCeeCCCCCCccCC
Confidence 34588998888776553 23333322 12469999877643
No 329
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.45 E-value=44 Score=22.32 Aligned_cols=37 Identities=8% Similarity=-0.063 Sum_probs=22.7
Q ss_pred CcccccCccccCCCceecCCCCcccHhhHHHHHhc----CCCCCCCcccccC
Q 036338 12 SFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDS----GNNTCPATMQVLQ 59 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~----~~~~CP~~~~~l~ 59 (408)
..|.|++|...|...- .+...... ..+.|+.|+..+.
T Consensus 8 ~~~~C~~C~k~f~~~~-----------~L~~H~~~H~~~~~~~C~~C~~~f~ 48 (70)
T 1x5w_A 8 HPEKCSECSYSCSSKA-----------ALRIHERIHCTDRPFKCNYCSFDTK 48 (70)
T ss_dssp CSEECSSSSCEESSHH-----------HHHHHHGGGCCSCSEECSSSSCEES
T ss_pred CCeECCCCCcccCCHH-----------HHHHHHHHcCCCCCEeCCCCCCccC
Confidence 4578988877776543 23333322 2256999987764
No 330
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.11 E-value=49 Score=22.60 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=19.8
Q ss_pred cccCccccCCC--ceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCC
Q 036338 15 RCPISLDVMKS--PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSK 61 (408)
Q Consensus 15 ~Cpi~~~~~~d--Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~ 61 (408)
.|+-|.+...+ .++..-|.+|-..| +.|-.|+.+|...
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~C---------F~C~~C~~~L~~~ 46 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKMEYKGSSWHETC---------FICHRCQQPIGTK 46 (72)
T ss_dssp CBSSSCCCCCSSSCEEEETTEEEETTT---------TCCSSSCCCCCSS
T ss_pred CCccCCCcccCCceEEEECcCeecccC---------CcccccCCccCCC
Confidence 46666665552 34444555555544 2455555555443
No 331
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=22.02 E-value=1.1e+02 Score=21.32 Aligned_cols=51 Identities=16% Similarity=0.166 Sum_probs=29.0
Q ss_pred cCCCCCCcccccCccccCCCceecC----CC-CcccHhhHHHHH-hcCCCCCCCcccc
Q 036338 6 LYITVPSFFRCPISLDVMKSPVSLC----TG-VTYDRASIQRWL-DSGNNTCPATMQV 57 (408)
Q Consensus 6 ~~~~~~~~~~Cpi~~~~~~dPv~~~----cg-h~f~r~cI~~~~-~~~~~~CP~~~~~ 57 (408)
...+..+...| +|++.-...++.. |. .-|=..|+.--- ..+...||.|...
T Consensus 9 ~~~d~~~~~~C-~C~~~~~g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~ 65 (71)
T 1wen_A 9 MPVDPNEPTYC-LCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 65 (71)
T ss_dssp CCCCTTSCCCS-TTCCCSCSSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSC
T ss_pred cccCCCCCCEE-ECCCCCCCCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcc
Confidence 33445566788 8999766665542 22 345555554110 1145789999754
No 332
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=21.98 E-value=9.9 Score=35.31 Aligned_cols=46 Identities=15% Similarity=0.058 Sum_probs=30.2
Q ss_pred CCcccccCccccCCCceec----CCC--CcccHhhHHHHHhcCCCCCCCcccc
Q 036338 11 PSFFRCPISLDVMKSPVSL----CTG--VTYDRASIQRWLDSGNNTCPATMQV 57 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~----~cg--h~f~r~cI~~~~~~~~~~CP~~~~~ 57 (408)
...-.||+|+..-.--|+- .-| |-+|.-|=.+|-- ....||.|+..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~-~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY-VRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC-CTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee-cCcCCcCCCCC
Confidence 4557899999865544443 256 4567778666632 34579999875
No 333
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.88 E-value=76 Score=22.14 Aligned_cols=37 Identities=5% Similarity=0.098 Sum_probs=22.0
Q ss_pred cccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 15 RCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 15 ~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
.|+-|.+...+.++..-|.+|=..| +.|-.|+.+|..
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~~ 53 (80)
T 1x3h_A 17 KCGGCNRPVLENYLSAMDTVWHPEC---------FVCGDCFTSFST 53 (80)
T ss_dssp BCTTTCCBCCSSCEEETTEEECTTT---------CBCSSSCCBSCS
T ss_pred ccccCCCeecceeEEECCCeEecCc---------CChhhCCCCCCC
Confidence 5777776666655555555555554 346666666654
No 334
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.76 E-value=36 Score=23.34 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=22.4
Q ss_pred CcccccCccccCCCceecCCCCcccHhhHHHHHh---cCCCCCCCcccccC
Q 036338 12 SFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLD---SGNNTCPATMQVLQ 59 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~---~~~~~CP~~~~~l~ 59 (408)
..|.|++|...|...-.+ -+- +..... ...+.|+.|+..|.
T Consensus 6 k~~~C~~C~k~f~~~~~L------~~H-~~~h~~~~~~~~~~C~~C~k~f~ 49 (78)
T 2d9h_A 6 SGLQCEICGFTCRQKASL------NWH-QRKHAETVAALRFPCEFCGKRFE 49 (78)
T ss_dssp CCEECSSSCCEESSHHHH------HHH-HHHHHHHTTTCCEECTTTCCEES
T ss_pred cCeECCCCCCeeCCHHHH------HHH-HHHhhccCCCcccCCCCCCchhC
Confidence 457888887777665321 111 111111 22457999988764
No 335
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=21.69 E-value=29 Score=35.78 Aligned_cols=49 Identities=27% Similarity=0.366 Sum_probs=35.4
Q ss_pred CCCcccccCccccCCC--------ceec--CCCCc--------------------ccHhhHHHHHhcC-------CCCCC
Q 036338 10 VPSFFRCPISLDVMKS--------PVSL--CTGVT--------------------YDRASIQRWLDSG-------NNTCP 52 (408)
Q Consensus 10 ~~~~~~Cpi~~~~~~d--------Pv~~--~cgh~--------------------f~r~cI~~~~~~~-------~~~CP 52 (408)
+|+--+|+-|.+.|.| |.|. .||=. .|..|-.+|-.-. ...||
T Consensus 14 ~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp 93 (657)
T 3ttc_A 14 VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACP 93 (657)
T ss_dssp CCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCc
Confidence 5677899999999988 5554 36643 4788999987532 23599
Q ss_pred Cccccc
Q 036338 53 ATMQVL 58 (408)
Q Consensus 53 ~~~~~l 58 (408)
.|+=.+
T Consensus 94 ~CGP~l 99 (657)
T 3ttc_A 94 ECGPYL 99 (657)
T ss_dssp TTSCCE
T ss_pred ccCccc
Confidence 998544
No 336
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.54 E-value=61 Score=23.49 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=27.6
Q ss_pred CcccccCccccCCC-ceecCCCCcccHhhHHHHHh
Q 036338 12 SFFRCPISLDVMKS-PVSLCTGVTYDRASIQRWLD 45 (408)
Q Consensus 12 ~~~~Cpi~~~~~~d-Pv~~~cgh~f~r~cI~~~~~ 45 (408)
+-|.|..|...|.+ +....-|.-||+.|..+.+.
T Consensus 41 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~f~ 75 (91)
T 2d8y_A 41 SCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFK 75 (91)
T ss_dssp TTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHHHSC
T ss_pred CCCeeCCCCCCCCCCCcEeECCEEECHHHHHHHhC
Confidence 45899999999987 46667899999999877655
No 337
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=21.42 E-value=52 Score=24.09 Aligned_cols=25 Identities=8% Similarity=0.081 Sum_probs=19.9
Q ss_pred ccccCccccCC--CceecCCCCcccHh
Q 036338 14 FRCPISLDVMK--SPVSLCTGVTYDRA 38 (408)
Q Consensus 14 ~~Cpi~~~~~~--dPv~~~cgh~f~r~ 38 (408)
-.|..|.+-.- .|+.-.||.+||-.
T Consensus 26 ~rC~~C~kkvgl~~~f~CrCg~~FC~~ 52 (85)
T 1wff_A 26 KHCFLCGKKTGLATSFECRCGNNFCAS 52 (85)
T ss_dssp CBCSSSCCBCSSSSCEECTTCCEECTT
T ss_pred ccchhhCCeecccCCeEcCCCCEeccc
Confidence 57999997444 48888899999965
No 338
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=21.34 E-value=3.9e+02 Score=26.28 Aligned_cols=86 Identities=19% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHhcccCCCHHHHHHHHHHHHHhccCcchHHHHHhcCcHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCCcc-hH
Q 036338 235 LAETVKSLSLDSDRRLIEASLSCLITISSSKRAKTKLINHKLITELGKLITDGHNGNGSGNGNGNGNGNGSGNGTVL-IT 313 (408)
Q Consensus 235 i~~Lv~lL~~~~~~~~~~~A~~aL~~Ls~~~~n~~~~~~~G~i~~Lv~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 313 (408)
++.++.-|.++ .+.+...++..+. ...-+..++..+.+..|+.++... +.... +.
T Consensus 118 ve~i~~aL~S~-~~~l~~~~ckVI~----~s~pk~lfa~t~iidiLL~lyFd~-------------------~t~i~~vv 173 (500)
T 3vld_A 118 AEDLVKALRSE-IDPLKVAACRVIE----NSQPKGLFATSNIIDILLDILFDE-------------------KVENDKLI 173 (500)
T ss_dssp HHHHHHHHTSS-CHHHHHHHHHHHH----TCSSGGGGTTSSHHHHHHHHHTCT-------------------TCCCHHHH
T ss_pred HHHHHHHHhcC-ChHHHHHHHHHhc----ccCchhHhccChHHHHHHHHHcCC-------------------CCCcHHHH
Q ss_pred HHHHHHHHHHhCCHHHHHHHHhhcCchHHHHHH
Q 036338 314 EKALRLVEILSTTKQGRMEICQDAALLNGVVQK 346 (408)
Q Consensus 314 ~~a~~~L~~L~~~~~~~~~~~~~~g~i~~lv~~ 346 (408)
...-.++..|+.++=-|+.+.. ...|.+.+.
T Consensus 174 n~IE~~~~~LssdeLirrril~--nnl~lL~~v 204 (500)
T 3vld_A 174 TAIEKALERLSTDELIRRRLFD--NNLPYLVSV 204 (500)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHT--TTHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHH--HhHHHHHHH
No 339
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=21.27 E-value=55 Score=24.51 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=11.4
Q ss_pred CcccccCccccCCCc
Q 036338 12 SFFRCPISLDVMKSP 26 (408)
Q Consensus 12 ~~~~Cpi~~~~~~dP 26 (408)
..|.|++|...|.+.
T Consensus 6 ~~~~C~~C~~~f~~~ 20 (124)
T 2dlq_A 6 SGVECPTCHKKFLSK 20 (124)
T ss_dssp SSCCCTTTCCCCSSH
T ss_pred CCCCCCCCCCcCCCH
Confidence 457899998888763
No 340
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.23 E-value=73 Score=22.24 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=21.5
Q ss_pred cccCccccCCCceecCCCCcccHhhHHHHHhcCCCCCCCcccccCC
Q 036338 15 RCPISLDVMKSPVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQS 60 (408)
Q Consensus 15 ~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~ 60 (408)
.|+-|.+...+.++..-|.+|-..| +.|-.|+.+|..
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~~H~~C---------F~C~~C~~~L~~ 53 (80)
T 2cuq_A 17 RCARCSKTLTQGGVTYRDQPWHREC---------LVCTGCQTPLAG 53 (80)
T ss_dssp CCTTTCCCCCSCCEESSSSEECTTT---------CBCSSSCCBCTT
T ss_pred cCCCCCCEecCcEEEECCchhhhhh---------CCcccCCCcCCC
Confidence 5777776666555545555554444 346666666644
No 341
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.94 E-value=37 Score=17.72 Aligned_cols=12 Identities=8% Similarity=0.434 Sum_probs=6.1
Q ss_pred ccccCccccCCC
Q 036338 14 FRCPISLDVMKS 25 (408)
Q Consensus 14 ~~Cpi~~~~~~d 25 (408)
|.|+.|...|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 455555554443
No 342
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=20.82 E-value=29 Score=18.05 Aligned_cols=12 Identities=25% Similarity=0.531 Sum_probs=6.2
Q ss_pred ccccCccccCCC
Q 036338 14 FRCPISLDVMKS 25 (408)
Q Consensus 14 ~~Cpi~~~~~~d 25 (408)
|.|++|...|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 456655554443
No 343
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=20.81 E-value=36 Score=19.14 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=8.6
Q ss_pred cccccCccccCCCc
Q 036338 13 FFRCPISLDVMKSP 26 (408)
Q Consensus 13 ~~~Cpi~~~~~~dP 26 (408)
.|.|+.|...|..+
T Consensus 11 ~~~C~~C~k~f~~~ 24 (37)
T 1p7a_A 11 PFQCPDCDRSFSRS 24 (37)
T ss_dssp SBCCTTTCCCBSSH
T ss_pred CccCCCCCcccCcH
Confidence 36677776666543
No 344
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.66 E-value=86 Score=22.11 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=27.6
Q ss_pred CCcccccCccccCCCceecCCCCcccHhhHHHHHh
Q 036338 11 PSFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLD 45 (408)
Q Consensus 11 ~~~~~Cpi~~~~~~dPv~~~cgh~f~r~cI~~~~~ 45 (408)
++-|.|..|...|.+-....-|.-||+.|..+-+.
T Consensus 40 ~~CF~C~~C~~~L~~~~~~~~g~~yC~~~y~~~fg 74 (80)
T 2dj7_A 40 VSCFKCQTCSVILTGEYISKDGVPYCESDYHAQFG 74 (80)
T ss_dssp TTTCBCSSSCCBCSSCCEEETTEEECTTHHHHHTT
T ss_pred cccCCcCcCCCCcCCCeEEECCEEECHHHHHHHcC
Confidence 35589999999998765667889999999776554
No 345
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.51 E-value=24 Score=18.27 Aligned_cols=12 Identities=8% Similarity=0.293 Sum_probs=5.9
Q ss_pred ccccCccccCCC
Q 036338 14 FRCPISLDVMKS 25 (408)
Q Consensus 14 ~~Cpi~~~~~~d 25 (408)
|.|++|...|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 2m0f_A 3 LKCRECGKQFTT 14 (29)
T ss_dssp EECTTTSCEESC
T ss_pred ccCCCCCCccCC
Confidence 445555554443
No 346
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=20.29 E-value=61 Score=24.70 Aligned_cols=11 Identities=9% Similarity=0.108 Sum_probs=6.7
Q ss_pred ccccCccccCC
Q 036338 14 FRCPISLDVMK 24 (408)
Q Consensus 14 ~~Cpi~~~~~~ 24 (408)
+.|++|.+.+.
T Consensus 42 ~~c~~~~~~~~ 52 (129)
T 2wbt_A 42 LIRAIVKTLIH 52 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred ccchhhhcccC
Confidence 55666666555
No 347
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.05 E-value=30 Score=17.99 Aligned_cols=12 Identities=8% Similarity=0.371 Sum_probs=5.6
Q ss_pred ccccCccccCCC
Q 036338 14 FRCPISLDVMKS 25 (408)
Q Consensus 14 ~~Cpi~~~~~~d 25 (408)
|.|+.|+..|..
T Consensus 4 ~~C~~C~~~f~~ 15 (30)
T 2m0d_A 4 YQCDYCGRSFSD 15 (30)
T ss_dssp EECTTTCCEESC
T ss_pred ccCCCCCcccCC
Confidence 445554444433
No 348
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.00 E-value=83 Score=21.41 Aligned_cols=39 Identities=8% Similarity=0.105 Sum_probs=22.8
Q ss_pred cccCccccCCC----ceecCCCCcccHhhHHHHHhcCCCCCCCcccccCCCC
Q 036338 15 RCPISLDVMKS----PVSLCTGVTYDRASIQRWLDSGNNTCPATMQVLQSKE 62 (408)
Q Consensus 15 ~Cpi~~~~~~d----Pv~~~cgh~f~r~cI~~~~~~~~~~CP~~~~~l~~~~ 62 (408)
.|+-|.+...+ .++..-|+.|-..| +.|-.|+.+|....
T Consensus 7 ~C~~C~~~I~~~~~~~~~~a~~~~wH~~C---------F~C~~C~~~L~~~~ 49 (72)
T 1x4l_A 7 GCAGCTNPISGLGGTKYISFEERQWHNDC---------FNCKKCSLSLVGRG 49 (72)
T ss_dssp SBTTTTBCCCCSSSCSCEECSSCEECTTT---------CBCSSSCCBCTTSC
T ss_pred CCcCCCccccCCCCcceEEECCcccCccc---------CEeccCCCcCCCCc
Confidence 57777776664 55544555554444 45777776665433
Done!